Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1MMS BPC Identified: 68 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
rRNA 1MMS 1051!C:1108!C G:C WC [cWW][XIX] 10.61 55.34; 59.3 3.96 -2.06 0.21 10.71
rRNA 1MMS 1052!C:1107!C C:G WC [cWW][XIX] 10.3 58.15; 55.04 3.12 -8.75 0.1 17.12
rRNA 1MMS 1053!C:1106!C U:A WC [cWW][XX] 10.29 54.84; 62.78 7.94 -11.58 0.39 15.4
rRNA 1MMS 1054!C:1105!C G:C WC [cWW][XIX] 10.52 56.07; 58.07 2.0 -4.64 0.13 8.77
rRNA 1MMS 1055!C:1104!C G:C WC [cWW][XIX] 10.43 57.88; 53.87 4.01 -4.1 0.18 20.23
rRNA 1MMS 1055!C:1085!C G:A rS [tSS][-] 8.15 91.34; 63.33 28.01 165.53 0.22 18.75
rRNA 1MMS 1056!C:1103!C G:A S [tSH][XI] 9.54 97.7; 9.02 88.68 23.05 0.52 20.71
rRNA 1MMS 1057!C:1081!C A:U WC [cWW][XX] 10.31 59.0; 57.62 1.38 -16.41 0.01 19.79
rRNA 1MMS 1058!C:1080!C U:A WC [cWW][XX] 10.11 58.41; 61.65 3.24 -2.59 0.67 18.17
rRNA 1MMS 1059!C:1079!C G:C WC [cWW][XIX] 10.74 52.09; 51.57 0.52 -5.09 0.13 7.89
rRNA 1MMS 1060!C:1088!C U:A H_1 [cWH][XXIII] 8.17 61.61; 50.67 10.94 -4.85 0.32 6.44
rRNA 1MMS 1062!C:1076!C G:C WC [cWW][XIX] 10.85 50.41; 53.35 2.94 -0.74 0.12 5.54
rRNA 1MMS 1063!C:1075!C G:C WC [cWW][XIX] 10.45 53.12; 54.65 1.54 -6.83 0.03 19.05
rRNA 1MMS 1064!C:1074!C C:G WC [cWW][XIX] 10.31 57.99; 54.06 3.93 -10.12 0.17 15.78
rRNA 1MMS 1065!C:1073!C U:A sWC [---][-] 10.8 89.72; 25.75 63.97 -2.44 0.08 11.86
rRNA 1MMS 1066!C:1068!C U:G S(sb:O2*-N7)_1 [---][-] 6.43 83.78; 39.51 44.27 -175.88 1.59 21.27
rRNA 1MMS 1071!C:1100!C G:C rH* [---][-] 14.23 17.61; 6.02 11.58 34.09 0.3 5.12
rRNA 1MMS 1071!C:1091!C G:G H_1 [cWH][VI] 11.74 63.35; 22.09 41.26 -10.62 0.1 3.69
rRNA 1MMS 1072!C:1099!C C:G rH_2 [---][-] 13.62 22.81; 11.91 10.89 11.76 0.03 12.61
rRNA 1MMS 1072!C:1092!C C:C H_1 [---][-] 9.68 71.93; 30.48 41.46 -7.74 0.39 13.7
rRNA 1MMS 1077!C:1088!C A:A rS(sb:O2*-N1)_1 [tSS][-] 8.82 55.9; 70.89 14.99 -159.65 1.5 37.15
rRNA 1MMS 1082!C:1086!C U:A rWC [tWW][XXI] 10.92 43.98; 31.1 12.88 140.88 0.15 20.61
rRNA 1MMS 1083!C:1085!C U:A S(sb:O2*-N7) [---][-] 6.5 80.64; 41.79 38.85 -171.55 0.57 20.41
rRNA 1MMS 1084!C:1105!C A:C rpS(sb:O2*-N3) [cSS][-] 5.7 91.61; 153.35 61.74 -67.49 0.0 29.77
rRNA 1MMS 1085!C:1104!C A:C rpS(bs:O2-O2*) [cSS][-] 5.87 147.44; 103.48 43.96 -58.75 1.56 13.63
rRNA 1MMS 1086!C:1103!C A:A pfS(sb:O2*-N1) [---][-] 8.33 163.16; 38.49 124.67 68.26 0.47 24.16
rRNA 1MMS 1087!C:1102!C G:C WC [cWW][XIX] 10.52 57.35; 58.5 1.15 -0.3 0.38 13.55
rRNA 1MMS 1089!C:1090!C G:U pS* [cHS][-] 7.65 134.98; 49.56 85.42 3.81 0.3 4.24
rRNA 1MMS 1090!C:1101!C U:U Wb [cWW][XVI] 8.26 47.96; 82.58 34.62 -4.51 0.39 9.53
rRNA 1MMS 1091!C:1100!C G:C WC [cWW][XIX] 10.36 58.09; 59.12 1.03 8.39 0.27 3.39
rRNA 1MMS 1092!C:1099!C C:G WC [cWW][XIX] 10.37 55.77; 57.01 1.24 7.64 0.3 1.33
rRNA 1MMS 1093!C:1098!C G:A S [tSH][XI] 9.66 96.82; 8.81 88.01 26.9 0.02 6.56
rRNA 1MMS 1094!C:1097!C U:C S(bp:N3-O2P) [---][-] 6.91 90.3; 40.88 49.41 -157.46 0.94 10.2
rRNA 1MMS 1094!C:1096!C U:A S(sb:O2*-N7) [---][-] 6.83 76.91; 35.86 41.05 -173.03 1.9 24.02
rRNA 1MMS 1051!D:1108!D G:C WC [cWW][XIX] 10.51 55.05; 59.21 4.16 -5.37 0.58 3.13
rRNA 1MMS 1052!D:1107!D C:G WC [cWW][XIX] 10.51 56.93; 60.76 3.82 -9.13 0.04 16.26
rRNA 1MMS 1053!D:1106!D U:A WC [cWW][XX] 10.46 57.57; 58.37 0.81 -9.22 0.04 12.48
rRNA 1MMS 1054!D:1105!D G:C WC [cWW][XIX] 10.49 56.41; 58.69 2.28 -3.77 0.02 9.53
rRNA 1MMS 1055!D:1104!D G:C WC [cWW][XIX] 10.42 58.18; 54.12 4.06 -3.31 0.13 20.36
rRNA 1MMS 1055!D:1085!D G:A rS [tSS][-] 8.15 91.29; 63.36 27.93 165.62 0.21 17.49
rRNA 1MMS 1056!D:1103!D G:A S [tSH][XI] 9.53 97.86; 8.94 88.93 23.97 0.43 19.3
rRNA 1MMS 1057!D:1081!D A:U WC [cWW][XX] 10.3 58.6; 57.97 0.63 -15.97 0.02 19.23
rRNA 1MMS 1058!D:1080!D U:A WC [cWW][XX] 10.11 58.39; 62.2 3.81 -1.14 0.59 17.63
rRNA 1MMS 1059!D:1079!D G:C WC [cWW][XIX] 10.71 51.94; 51.93 0.01 -6.46 0.14 8.67
rRNA 1MMS 1060!D:1088!D U:A H_1 [cWH][XXIII] 8.22 61.2; 50.28 10.92 -3.46 0.18 6.88
rRNA 1MMS 1062!D:1076!D G:C WC [cWW][XIX] 10.83 50.78; 53.34 2.56 -1.61 0.18 7.19
rRNA 1MMS 1063!D:1075!D G:C WC [cWW][XIX] 10.44 53.15; 54.78 1.63 -6.61 0.21 19.34
rRNA 1MMS 1064!D:1074!D C:G WC [cWW][XIX] 10.3 57.85; 54.47 3.39 -9.36 0.17 16.03
rRNA 1MMS 1065!D:1073!D U:A sWC [---][-] 10.74 89.13; 26.5 62.62 -3.58 0.25 13.05
rRNA 1MMS 1066!D:1068!D U:G S(sb:O2*-N7)_1 [---][-] 6.59 81.89; 37.56 44.33 -175.62 1.49 23.88
rRNA 1MMS 1071!D:1100!D G:C rH* [---][-] 14.25 17.69; 6.6 11.09 42.56 0.41 8.15
rRNA 1MMS 1071!D:1091!D G:G H_1 [cWH][VI] 11.72 63.35; 22.73 40.62 -10.23 0.07 3.93
rRNA 1MMS 1072!D:1099!D C:G rH_2 [---][-] 13.66 22.27; 11.98 10.29 15.73 0.08 14.7
rRNA 1MMS 1072!D:1092!D C:C H_1 [---][-] 9.66 71.37; 30.75 40.62 -7.89 0.49 16.68
rRNA 1MMS 1077!D:1088!D A:A rS(sb:O2*-N1)_1 [tSS][-] 8.83 56.77; 72.04 15.27 -159.77 1.56 36.26
rRNA 1MMS 1082!D:1086!D U:A rWC [tWW][XXI] 10.9 44.01; 31.76 12.24 139.43 0.24 21.21
rRNA 1MMS 1083!D:1085!D U:A S(sb:O2*-N7) [---][-] 6.56 80.52; 41.87 38.65 -171.99 0.53 19.55
rRNA 1MMS 1084!D:1105!D A:C rpS(sb:O2*-N3) [cSS][-] 5.64 92.46; 154.65 62.19 -66.22 0.02 28.51
rRNA 1MMS 1085!D:1104!D A:C rpS(bs:O2-O2*) [cSS][-] 5.81 147.94; 103.88 44.07 -58.21 1.57 12.55
rRNA 1MMS 1086!D:1103!D A:A pfS(sb:O2*-N1) [---][-] 8.32 162.6; 38.58 124.02 68.45 0.45 24.49
rRNA 1MMS 1087!D:1102!D G:C WC [cWW][XIX] 10.54 57.06; 58.06 1.0 -0.85 0.32 10.16
rRNA 1MMS 1089!D:1090!D G:U pS* [cHS][-] 7.7 134.93; 49.57 85.36 2.96 0.5 5.55
rRNA 1MMS 1090!D:1101!D U:U Wb [cWW][XVI] 8.28 48.16; 82.19 34.04 -4.51 0.45 10.41
rRNA 1MMS 1091!D:1100!D G:C WC [cWW][XIX] 10.35 57.69; 58.76 1.08 9.59 0.32 5.88
rRNA 1MMS 1092!D:1099!D C:G WC [cWW][XIX] 10.4 55.8; 56.78 0.98 8.73 0.19 2.99
rRNA 1MMS 1093!D:1098!D G:A S [tSH][XI] 9.68 96.79; 9.67 87.12 34.58 0.17 7.54
rRNA 1MMS 1094!D:1097!D U:C S(bp:N3-O2P) [---][-] 7.11 90.14; 39.97 50.16 -161.78 0.68 9.3
rRNA 1MMS 1094!D:1096!D U:A S(sb:O2*-N7) [---][-] 6.82 77.29; 38.82 38.47 -171.77 1.99 23.75