Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1N77 BPC Identified: 73 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
tRNA 1N77 501!C:572!C G:C WC [cWW][XIX] 10.9 47.33; 50.01 2.68 -17.28 0.47 19.17
tRNA 1N77 502!C:571!C G:U Wb [cWW][XXVIII] 10.56 41.88; 67.06 25.19 -12.25 0.14 15.9
tRNA 1N77 503!C:570!C C:G WC [cWW][XIX] 10.79 52.09; 54.47 2.38 -9.77 0.38 16.88
tRNA 1N77 504!C:569!C C:G WC [cWW][XIX] 10.68 56.58; 54.34 2.24 -1.61 0.45 14.47
tRNA 1N77 505!C:568!C C:G WC [cWW][XIX] 10.82 50.85; 52.79 1.94 -5.52 0.26 11.08
tRNA 1N77 506!C:567!C C:G WC [cWW][XIX] 10.53 56.39; 53.38 3.02 -11.29 0.05 14.61
tRNA 1N77 507!C:566!C A:U WC [cWW][XX] 10.91 56.89; 49.0 7.89 -5.53 0.07 10.28
tRNA 1N77 508!C:546!C U:A rpS(sb:O2*-N3) [cSS][-] 5.44 124.15; 85.97 38.18 -69.93 2.7 15.73
tRNA 1N77 508!C:521!C U:A fS(sb:O2*-N1) [tSW][-] 8.1 98.02; 61.07 36.95 158.5 0.08 26.85
tRNA 1N77 508!C:514!C U:A rH_1 [tWH][XXIV] 9.56 33.08; 16.53 16.55 159.91 0.78 23.69
tRNA 1N77 510!C:525!C G:C WC [cWW][XIX] 10.63 53.9; 52.95 0.94 -0.03 0.34 12.74
tRNA 1N77 511!C:524!C U:A WC [cWW][XX] 10.29 54.5; 61.14 6.64 -7.04 0.14 11.76
tRNA 1N77 512!C:523!C C:G WC [cWW][XIX] 10.62 53.99; 53.75 0.24 -1.9 0.06 4.91
tRNA 1N77 513!C:522!C U:G Wb [cWW][XXVIII] 10.14 71.56; 44.57 26.98 1.07 0.02 5.96
tRNA 1N77 514!C:521!C A:A pfS [cSW][-] 9.59 34.16; 123.22 89.06 -11.92 0.3 10.82
tRNA 1N77 515!C:548!C G:C rWb [tWW][XXII] 10.66 43.35; 55.25 11.9 -163.75 0.65 7.7
tRNA 1N77 515!C:520!C G:U pfS*_1 [cWS][-] 8.87 121.32; 48.6 72.72 30.01 1.09 31.1
tRNA 1N77 516!C:560!C C:U rpS(ss:O2*-O2*)_2 [---][-] 6.62 151.64; 113.27 38.36 157.8 0.02 19.6
tRNA 1N77 518!C:555!C G:U fS_1 [tSW][-] 8.71 33.44; 110.42 76.99 -129.48 0.61 25.85
tRNA 1N77 519!C:556!C G:C WC [cWW][XIX] 10.53 59.47; 52.37 7.1 -22.98 0.89 39.3
tRNA 1N77 520!C:548!C U:C rH* [---][-] 13.08 8.19; 15.61 7.42 95.73 1.09 32.15
tRNA 1N77 522!C:546!C G:A rH*_1 [tHW][-] 12.19 17.52; 24.26 6.73 -176.99 0.21 11.6
tRNA 1N77 526!C:544!C G:A WC [cWW][VIII] 12.59 47.33; 50.67 3.34 -16.35 0.45 30.45
tRNA 1N77 527!C:543!C C:G WC [cWW][XIX] 10.66 54.24; 56.18 1.95 -16.28 0.86 28.58
tRNA 1N77 528!C:542!C G:C WC [cWW][XIX] 10.54 54.96; 58.19 3.23 -4.57 0.02 9.95
tRNA 1N77 529!C:541!C G:C WC [cWW][XIX] 10.35 52.42; 57.35 4.93 -1.76 0.01 6.97
tRNA 1N77 530!C:540!C C:G WC [cWW][XIX] 10.46 61.2; 53.2 7.99 -9.26 0.0 12.04
tRNA 1N77 531!C:539!C C:G WC [cWW][XIX] 10.59 56.71; 54.16 2.56 -9.45 0.18 13.48
tRNA 1N77 532!C:538!C C:A sWb [---][-] 11.0 80.41; 28.82 51.59 -4.23 0.29 17.93
tRNA 1N77 549!C:565!C G:C WC [cWW][XIX] 10.66 54.8; 63.17 8.37 -6.84 0.11 8.62
tRNA 1N77 550!C:564!C G:C WC [cWW][XIX] 10.75 57.71; 51.4 6.31 2.19 0.23 5.68
tRNA 1N77 551!C:563!C G:C WC [cWW][XIX] 10.61 59.16; 54.1 5.05 3.11 0.01 2.61
tRNA 1N77 552!C:562!C G:C WC [cWW][XIX] 10.6 54.56; 54.82 0.26 -0.2 0.28 5.55
tRNA 1N77 553!C:561!C G:C WC [cWW][XIX] 10.82 47.27; 52.29 5.02 -5.85 0.6 0.8
tRNA 1N77 554!C:558!C U:A rH_1 [tWH][XXIV] 10.25 30.27; 18.49 11.78 -145.64 0.62 9.23
tRNA 1N77 555!C:557!C U:G S(sb:O2*-N7)_1 [---][-] 6.88 76.74; 38.21 38.53 -178.13 2.19 24.31
tRNA 1N77 501!D:572!D G:C WC [cWW][XIX] 10.85 47.5; 50.25 2.75 -20.9 0.12 22.76
tRNA 1N77 502!D:571!D G:U Wb [cWW][XXVIII] 10.51 41.13; 67.43 26.3 -11.34 0.16 17.44
tRNA 1N77 503!D:570!D C:G WC [cWW][XIX] 10.71 52.67; 54.67 2.0 -8.31 0.55 19.09
tRNA 1N77 504!D:569!D C:G WC [cWW][XIX] 10.63 58.13; 54.85 3.28 -0.29 0.25 9.92
tRNA 1N77 505!D:568!D C:G WC [cWW][XIX] 10.76 51.83; 52.88 1.05 -7.24 0.1 9.04
tRNA 1N77 506!D:567!D C:G WC [cWW][XIX] 10.51 56.42; 52.69 3.74 -9.24 0.06 12.37
tRNA 1N77 507!D:566!D A:U WC [cWW][XX] 10.86 57.85; 48.25 9.59 -6.6 0.04 8.23
tRNA 1N77 508!D:546!D U:A rpS(sb:O2*-N3) [cSS][-] 5.46 124.41; 85.93 38.48 -69.15 2.59 16.43
tRNA 1N77 508!D:521!D U:A fS(sb:O2*-N1) [tSW][-] 8.1 97.95; 60.4 37.55 159.75 0.06 24.3
tRNA 1N77 508!D:514!D U:A rH_1 [tWH][XXIV] 9.58 33.21; 16.87 16.34 162.01 0.65 20.19
tRNA 1N77 509!D:523!D C:G rS*_1 [tHH][-] 11.77 11.2; 9.43 1.78 129.05 0.84 17.44
tRNA 1N77 510!D:525!D G:C WC [cWW][XIX] 10.68 53.29; 52.88 0.41 0.67 0.33 12.77
tRNA 1N77 511!D:524!D U:A WC [cWW][XX] 10.29 54.76; 61.24 6.48 -4.97 0.09 10.28
tRNA 1N77 512!D:523!D C:G WC [cWW][XIX] 10.61 54.74; 53.07 1.67 -0.05 0.14 3.51
tRNA 1N77 513!D:522!D U:G Wb [cWW][XXVIII] 10.16 70.47; 44.39 26.08 1.77 0.05 4.85
tRNA 1N77 514!D:521!D A:A pfS [cSW][-] 9.58 33.61; 123.17 89.57 -11.29 0.38 9.65
tRNA 1N77 515!D:548!D G:C rWb [tWW][XXII] 10.67 43.38; 55.36 11.99 -170.77 0.07 5.19
tRNA 1N77 515!D:520!D G:U pfS*_1 [cWS][-] 8.86 121.77; 48.23 73.54 28.04 1.11 29.81
tRNA 1N77 516!D:560!D C:U rpS(ss:O2*-O2*)_2 [---][-] 6.81 151.43; 113.08 38.35 156.64 0.31 16.57
tRNA 1N77 518!D:555!D G:U fS_2 [---][-] 9.18 34.86; 111.09 76.23 -135.97 0.34 24.57
tRNA 1N77 519!D:556!D G:C WC_Mo [cWW][XIX] 10.98 61.98; 52.53 9.44 -25.04 1.1 41.47
tRNA 1N77 520!D:548!D U:C rH* [---][-] 12.96 9.21; 17.11 7.9 89.3 1.09 25.07
tRNA 1N77 522!D:546!D G:A rH*_1 [tHW][-] 12.28 17.75; 23.91 6.16 -175.89 0.42 13.31
tRNA 1N77 526!D:544!D G:A WC [cWW][VIII] 12.54 47.19; 50.8 3.6 -13.12 0.52 29.55
tRNA 1N77 527!D:543!D C:G WC [cWW][XIX] 10.65 53.24; 56.64 3.4 -17.87 0.88 31.04
tRNA 1N77 528!D:542!D G:C WC [cWW][XIX] 10.52 55.58; 57.14 1.56 -4.36 0.14 11.0
tRNA 1N77 529!D:541!D G:C WC [cWW][XIX] 10.36 51.59; 57.51 5.92 -2.1 0.08 8.02
tRNA 1N77 530!D:540!D C:G WC [cWW][XIX] 10.49 60.89; 52.19 8.7 -8.06 0.0 13.04
tRNA 1N77 531!D:539!D C:G WC [cWW][XIX] 10.57 56.14; 53.53 2.6 -11.29 0.13 14.71
tRNA 1N77 532!D:538!D C:A sWb [---][-] 11.04 80.13; 29.7 50.43 -6.75 0.31 16.95
tRNA 1N77 549!D:565!D G:C WC [cWW][XIX] 10.69 53.9; 62.97 9.07 -9.37 0.22 11.77
tRNA 1N77 550!D:564!D G:C WC [cWW][XIX] 10.75 58.03; 51.13 6.91 2.44 0.4 3.81
tRNA 1N77 551!D:563!D G:C WC [cWW][XIX] 10.67 59.3; 53.71 5.59 3.68 0.07 1.82
tRNA 1N77 552!D:562!D G:C WC [cWW][XIX] 10.62 54.65; 54.49 0.16 0.37 0.29 5.17
tRNA 1N77 553!D:561!D G:C WC [cWW][XIX] 10.89 46.52; 51.93 5.41 -5.02 0.53 1.15
tRNA 1N77 554!D:558!D U:A rH_1 [tWH][XXIV] 10.23 30.2; 17.81 12.39 -145.89 0.55 9.5
tRNA 1N77 555!D:557!D U:G S(sb:O2*-N7)_1 [---][-] 6.87 76.82; 38.53 38.3 -179.12 2.23 23.59