Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3IZ4 BPC Identified: 134 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
tmRNA 3IZ4 1!A:374!A G:C WC [cWW][XIX] 10.81 52.14; 55.09 2.95 -2.51 0.1 2.91
tmRNA 3IZ4 2!A:373!A G:C WC [cWW][XIX] 10.59 47.78; 59.27 11.49 -9.09 0.2 19.32
tmRNA 3IZ4 3!A:372!A G:U Wb [cWW][XXVIII] 10.5 39.89; 66.47 26.59 -18.93 1.03 26.04
tmRNA 3IZ4 4!A:371!A G:C WC [cWW][XIX] 10.99 52.78; 48.79 3.99 -13.0 0.52 27.97
tmRNA 3IZ4 5!A:370!A C:G WC [cWW][XIX] 10.76 55.04; 49.93 5.11 -12.6 0.03 20.87
tmRNA 3IZ4 6!A:369!A U:A WC [cWW][XX] 10.02 64.69; 60.85 3.84 -13.98 0.82 22.57
tmRNA 3IZ4 6!A:368!A U:C WC_mo [cWW][XVIII] 12.28 46.81; 29.45 17.36 2.89 0.65 32.0
tmRNA 3IZ4 7!A:368!A G:C WC [cWW][XIX] 10.77 52.44; 52.24 0.2 -14.48 0.86 28.34
tmRNA 3IZ4 14!A:348!A G:G rWb_o [---][-] 13.21 54.33; 6.05 48.28 75.38 1.52 12.53
tmRNA 3IZ4 18!A:348!A C:G S*(pb:O2P-N1) [---][-] 11.59 44.65; 73.22 28.57 124.84 1.63 39.14
tmRNA 3IZ4 21!A:347!A C:G WC [cWW][XIX] 10.96 47.95; 52.0 4.05 -0.75 0.18 9.1
tmRNA 3IZ4 22!A:346!A G:C WC [cWW][XIX] 10.62 49.48; 56.95 7.47 -16.54 0.37 24.5
tmRNA 3IZ4 24!A:345!A G:U pfS [cSW][-] 8.46 61.88; 114.36 52.48 -27.94 0.52 32.76
tmRNA 3IZ4 24!A:344!A G:U sWb* [---][-] 12.86 61.91; 26.85 35.05 16.08 1.22 37.39
tmRNA 3IZ4 25!A:343!A A:U WC [cWW][XX] 10.68 55.03; 52.87 2.16 -11.82 0.04 19.49
tmRNA 3IZ4 26!A:342!A U:A WC [cWW][XX] 11.25 46.65; 45.98 0.66 -23.59 0.01 26.07
tmRNA 3IZ4 27!A:341!A U:A WC [cWW][XX] 10.81 52.71; 50.39 2.32 -14.63 0.0 24.53
tmRNA 3IZ4 29!A:337!A G:U rH_1 [tWH][-] 9.66 11.84; 37.66 25.82 106.84 0.98 34.45
tmRNA 3IZ4 30!A:338!A C:A rH_1 [rWH][XXV] 10.7 27.02; 8.79 18.23 -154.87 0.74 20.27
tmRNA 3IZ4 32!A:336!A A:G WC [cWW][VIII] 12.76 39.56; 48.57 9.0 -34.25 0.79 41.37
tmRNA 3IZ4 34!A:335!A A:C Wb* [cWW][-] 11.78 69.69; 35.99 33.7 10.36 0.55 3.96
tmRNA 3IZ4 35!A:334!A C:A Wb* [cWW][-] 10.44 52.88; 72.35 19.47 -20.32 0.8 36.61
tmRNA 3IZ4 36!A:333!A C:G WC [cWW][XIX] 11.02 50.8; 45.66 5.15 -17.11 0.06 29.57
tmRNA 3IZ4 37!A:332!A C:G WC [cWW][XIX] 10.81 51.84; 53.83 1.98 -2.88 0.02 11.6
tmRNA 3IZ4 38!A:331!A A:A Wb [cWW][-] 11.79 52.53; 68.23 15.69 -17.26 0.1 33.96
tmRNA 3IZ4 40!A:329!A G:C WC [cWW][XIX] 10.7 51.28; 54.46 3.18 -12.02 0.05 24.45
tmRNA 3IZ4 41!A:328!A G:C WC [cWW][XIX] 11.1 43.74; 49.36 5.61 -16.44 0.2 23.61
tmRNA 3IZ4 42!A:327!A U:A WC [cWW][XX] 10.25 59.47; 58.83 0.64 -3.18 0.68 21.11
tmRNA 3IZ4 43!A:326!A G:U fS*_2 [---][-] 11.43 80.82; 17.63 63.18 -77.41 1.39 61.09
tmRNA 3IZ4 43!A:323!A G:U Wb [cWW][XXVIII] 11.23 26.67; 52.56 25.89 31.74 0.77 23.87
tmRNA 3IZ4 44!A:326!A C:U pfS*_1 [cWS][-] 6.99 112.23; 35.26 76.97 -82.93 0.39 68.12
tmRNA 3IZ4 44!A:322!A C:G WC [cWW][XIX] 11.3 47.89; 43.72 4.17 10.24 0.97 29.94
tmRNA 3IZ4 44!A:316!A C:A rS* [tHH][-] 10.77 23.27; 20.05 3.22 -103.72 0.7 34.84
tmRNA 3IZ4 45!A:321!A A:U WC [cWW][XX] 9.95 64.93; 60.85 4.08 -18.02 0.02 16.61
tmRNA 3IZ4 45!A:317!A A:A rS* [tHH][-] 11.28 7.17; 12.26 5.1 -127.97 0.16 23.33
tmRNA 3IZ4 46!A:320!A U:A WC [cWW][XX] 10.78 49.56; 56.13 6.56 -21.31 0.41 35.4
tmRNA 3IZ4 47!A:319!A G:C WC [cWW][XIX] 10.57 52.17; 57.62 5.46 -9.52 0.31 20.61
tmRNA 3IZ4 48!A:318!A C:G WC [cWW][XIX] 11.18 48.11; 51.8 3.7 -12.78 0.13 22.85
tmRNA 3IZ4 49!A:67!A C:G WC_mo [cWW][XIX] 12.45 34.42; 37.09 2.67 -42.8 0.39 46.51
tmRNA 3IZ4 50!A:66!A G:C WC [cWW][XIX] 10.78 50.97; 52.93 1.96 -13.59 0.11 17.88
tmRNA 3IZ4 51!A:65!A A:U WC [cWW][XX] 10.45 49.53; 58.38 8.85 -24.68 0.21 27.93
tmRNA 3IZ4 52!A:72!A G:A rS [tSS][-] 8.41 88.98; 50.63 38.35 -178.05 0.14 32.2
tmRNA 3IZ4 52!A:64!A G:C WC [cWW][XIX] 11.05 45.06; 50.19 5.12 -26.32 0.01 22.88
tmRNA 3IZ4 53!A:63!A G:C Wb [---][-] 10.06 50.77; 66.95 16.19 -12.16 0.41 37.7
tmRNA 3IZ4 56!A:77!A C:G WC [cWW][XIX] 11.35 41.99; 46.25 4.26 -30.55 1.02 48.71
tmRNA 3IZ4 57!A:76!A G:C WC [cWW][XIX] 10.8 46.52; 49.96 3.44 -28.94 0.27 36.71
tmRNA 3IZ4 58!A:75!A G:C WC [cWW][XIX] 11.0 50.68; 47.98 2.7 -16.86 0.14 28.48
tmRNA 3IZ4 59!A:74!A U:G sWb* [---][-] 11.62 39.06; 82.26 43.19 17.91 1.11 23.02
tmRNA 3IZ4 60!A:73!A U:A WC [cWW][XX] 11.41 47.58; 46.26 1.31 10.43 0.45 16.94
tmRNA 3IZ4 70!A:71!A A:A pS [cSH][-] 7.56 159.78; 23.89 135.89 1.88 0.8 48.34
tmRNA 3IZ4 110!A:150!A U:A WC [cWW][XX] 10.99 48.62; 55.04 6.42 -20.35 0.75 28.89
tmRNA 3IZ4 111!A:149!A C:G WC [cWW][XIX] 10.65 56.04; 54.83 1.21 -12.12 0.09 21.57
tmRNA 3IZ4 112!A:148!A A:U WC [cWW][XX] 10.48 57.87; 55.81 2.06 -6.58 0.02 17.74
tmRNA 3IZ4 113!A:147!A U:A WC [cWW][XX] 11.5 41.59; 46.02 4.43 -27.67 0.47 30.24
tmRNA 3IZ4 114!A:146!A C:G WC [cWW][XIX] 10.87 49.79; 51.78 1.99 -9.64 0.05 22.31
tmRNA 3IZ4 115!A:145!A A:U WC [cWW][XX] 11.04 51.67; 49.21 2.45 -15.21 0.25 29.83
tmRNA 3IZ4 116!A:144!A U:A WC [cWW][XX] 11.01 49.95; 49.63 0.32 -22.8 0.33 30.62
tmRNA 3IZ4 117!A:143!A C:G WC [cWW][XIX] 10.88 49.69; 54.04 4.35 -7.96 0.57 6.85
tmRNA 3IZ4 119!A:141!A U:A WC [cWW][XX] 10.58 52.49; 61.3 8.81 14.04 0.17 12.74
tmRNA 3IZ4 120!A:140!A C:A Wb* [cWW][-] 11.44 40.31; 60.05 19.74 -1.43 0.56 20.82
tmRNA 3IZ4 121!A:139!A A:U WC [cWW][XX] 10.54 57.11; 54.84 2.27 -6.91 0.6 22.66
tmRNA 3IZ4 122!A:138!A C:G WC [cWW][XIX] 10.74 52.4; 49.56 2.84 -14.92 0.28 23.88
tmRNA 3IZ4 123!A:137!A A:U WC [cWW][XX] 10.03 62.89; 63.62 0.73 -5.06 0.1 17.08
tmRNA 3IZ4 124!A:136!A U:A WC [cWW][XX] 11.43 40.76; 36.14 4.63 -44.92 0.02 54.39
tmRNA 3IZ4 125!A:135!A G:C WC [cWW][XIX] 10.87 51.47; 52.81 1.34 -2.36 0.12 14.8
tmRNA 3IZ4 127!A:134!A G:C WC [cWW][XIX] 10.89 47.44; 52.65 5.21 -3.72 0.08 5.57
tmRNA 3IZ4 128!A:133!A G:C WC [cWW][XIX] 10.77 51.56; 53.58 2.02 -5.02 0.19 5.45
tmRNA 3IZ4 154!A:195!A C:G WC [cWW][XIX] 10.97 48.42; 48.38 0.04 -28.06 0.48 26.99
tmRNA 3IZ4 155!A:194!A U:A WC [cWW][XX] 10.47 58.18; 55.74 2.44 -20.95 0.1 25.6
tmRNA 3IZ4 156!A:193!A C:G WC [cWW][XIX] 10.78 53.68; 50.49 3.19 -22.15 0.57 25.88
tmRNA 3IZ4 157!A:192!A U:A WC [cWW][XX] 11.59 45.02; 47.06 2.05 -14.23 0.08 17.87
tmRNA 3IZ4 158!A:191!A C:G WC [cWW][XIX] 10.48 59.4; 52.48 6.92 6.74 0.43 5.38
tmRNA 3IZ4 160!A:185!A C:G WC [cWW][XIX] 10.51 58.58; 44.79 13.79 -16.85 0.73 42.23
tmRNA 3IZ4 161!A:184!A C:G WC [cWW][XIX] 11.03 47.56; 48.7 1.14 -18.45 0.04 22.1
tmRNA 3IZ4 162!A:183!A C:G WC [cWW][XIX] 10.75 55.9; 51.6 4.3 -15.89 0.54 25.81
tmRNA 3IZ4 163!A:182!A U:G Wb [cWW][XXVIII] 10.39 73.95; 38.81 35.13 -1.38 0.3 16.54
tmRNA 3IZ4 164!A:181!A A:C S* [tHS][-] 9.09 96.38; 8.71 87.67 -157.68 0.27 8.89
tmRNA 3IZ4 166!A:179!A C:G WC [cWW][XIX] 11.14 46.55; 47.23 0.67 5.46 1.09 19.43
tmRNA 3IZ4 167!A:178!A C:G WC [cWW][XIX] 10.3 63.48; 52.37 11.11 -0.19 0.38 10.77
tmRNA 3IZ4 168!A:177!A U:A WC [cWW][XX] 10.8 47.75; 53.57 5.82 0.53 0.93 22.02
tmRNA 3IZ4 170!A:172!A C:C S(sp:O2*-O2P) [---][-] 8.64 160.53; 64.67 95.86 57.62 0.96 58.52
tmRNA 3IZ4 172!A:211!A C:G WC [cWW][XIX] 10.66 57.54; 48.36 9.17 -10.71 0.13 12.64
tmRNA 3IZ4 173!A:210!A U:A WC [cWW][XX] 10.87 49.63; 54.81 5.18 -21.86 0.09 30.38
tmRNA 3IZ4 174!A:209!A C:G WC [cWW][XIX] 10.52 58.7; 51.17 7.54 -8.62 0.24 16.45
tmRNA 3IZ4 175!A:208!A U:A WC [cWW][XX] 10.98 51.24; 50.16 1.08 12.13 0.32 12.27
tmRNA 3IZ4 176!A:207!A U:A WC [cWW][XX] 10.78 53.13; 44.44 8.68 -27.86 2.04 62.92
tmRNA 3IZ4 194!A:201!A A:A rpS* [---][-] 11.72 49.1; 11.02 38.07 -8.91 0.78 38.15
tmRNA 3IZ4 216!A:244!A C:U WC_mo [cWW][XVIII] 11.1 48.3; 30.66 17.65 22.35 0.22 49.27
tmRNA 3IZ4 216!A:243!A C:G WC [cWW][XIX] 10.53 51.39; 45.59 5.8 37.3 1.42 24.1
tmRNA 3IZ4 218!A:242!A U:C WC [cWW][XVIII] 8.93 50.53; 58.82 8.28 -28.34 0.51 42.74
tmRNA 3IZ4 218!A:241!A U:G sWb* [---][-] 11.99 31.83; 65.47 33.64 1.55 1.32 35.1
tmRNA 3IZ4 219!A:240!A G:A H_1 [cWH][IX] 11.11 51.46; 42.08 9.38 13.15 0.26 12.72
tmRNA 3IZ4 220!A:239!A G:A H_1 [cWH][IX] 11.02 57.68; 44.04 13.64 -2.65 0.24 15.15
tmRNA 3IZ4 222!A:237!A A:U WC [cWW][XX] 10.66 51.18; 48.57 2.6 -36.32 1.19 48.83
tmRNA 3IZ4 223!A:253!A G:A S [tSH][XI] 9.62 97.29; 12.2 85.09 42.19 1.41 44.89
tmRNA 3IZ4 223!A:252!A G:U fS*(bs:N3-O2*) [---][-] 7.57 130.59; 43.85 86.73 144.1 0.05 58.47
tmRNA 3IZ4 223!A:236!A G:U Wb [cWW][XXVIII] 10.79 36.62; 62.42 25.79 -19.19 0.26 21.58
tmRNA 3IZ4 224!A:235!A C:G WC [cWW][XIX] 10.65 56.23; 47.58 8.65 3.08 0.89 18.69
tmRNA 3IZ4 225!A:234!A C:G WC [cWW][XIX] 10.87 49.37; 51.45 2.07 -12.63 0.57 25.78
tmRNA 3IZ4 228!A:260!A G:C WC [cWW][XIX] 10.73 48.94; 55.34 6.4 -16.63 0.3 19.37
tmRNA 3IZ4 229!A:259!A C:G WC [cWW][XIX] 10.95 53.94; 46.8 7.14 -10.86 0.1 15.55
tmRNA 3IZ4 230!A:258!A C:G WC [cWW][XIX] 10.46 60.64; 52.83 7.81 -13.98 0.18 20.18
tmRNA 3IZ4 231!A:257!A U:A WC [cWW][XX] 10.73 51.85; 54.03 2.18 -24.46 0.37 31.34
tmRNA 3IZ4 232!A:256!A G:C WC [cWW][XIX] 10.85 51.36; 52.53 1.17 -14.7 0.25 23.2
tmRNA 3IZ4 263!A:298!A G:C WC [cWW][XIX] 10.29 54.65; 58.47 3.83 -4.37 0.9 34.78
tmRNA 3IZ4 264!A:297!A U:G Wb [cWW][XXVIII] 11.23 63.91; 34.07 29.85 -9.59 0.02 20.03
tmRNA 3IZ4 265!A:296!A U:A WC [cWW][XX] 11.04 50.28; 48.66 1.62 -21.04 0.03 30.39
tmRNA 3IZ4 266!A:295!A U:A WC [cWW][XX] 10.77 50.29; 56.02 5.74 -13.91 0.7 27.8
tmRNA 3IZ4 267!A:294!A G:C WC [cWW][XIX] 10.97 47.64; 50.02 2.39 -17.94 0.1 32.79
tmRNA 3IZ4 268!A:293!A U:G Wb [cWW][XXVIII] 10.61 67.19; 40.91 26.28 -10.67 0.12 28.12
tmRNA 3IZ4 269!A:292!A U:G Wb [cWW][XXVIII] 10.49 71.54; 38.4 33.13 -4.63 0.0 27.88
tmRNA 3IZ4 270!A:291!A A:U WC [cWW][XX] 10.44 56.83; 55.03 1.8 -16.08 0.76 33.43
tmRNA 3IZ4 272!A:289!A U:G S*_1 [tHS][-] 11.38 18.97; 97.24 78.26 -0.78 0.26 23.22
tmRNA 3IZ4 273!A:289!A G:G pfS_1 [cSW][-] 8.94 67.3; 114.24 46.94 -7.43 1.62 11.11
tmRNA 3IZ4 273!A:288!A G:A WC [cWW][VIII] 12.35 61.62; 49.41 12.21 -3.98 1.26 19.9
tmRNA 3IZ4 274!A:287!A G:C WC [cWW][XIX] 10.6 51.03; 57.34 6.31 -12.29 0.04 17.98
tmRNA 3IZ4 275!A:286!A C:G WC [cWW][XIX] 11.12 48.59; 44.65 3.94 -17.32 0.04 23.66
tmRNA 3IZ4 276!A:307!A G:A pS_2 [cSH][-] 6.81 121.68; 65.83 55.85 17.75 0.98 12.6
tmRNA 3IZ4 276!A:285!A G:C WC [cWW][XIX] 10.48 54.43; 56.77 2.34 1.68 0.97 20.9
tmRNA 3IZ4 278!A:314!A G:C WC [cWW][XIX] 10.62 51.38; 56.56 5.18 -16.43 0.29 18.98
tmRNA 3IZ4 279!A:313!A U:A WC [cWW][XX] 11.26 44.09; 55.03 10.94 -14.18 0.4 30.35
tmRNA 3IZ4 280!A:312!A C:G WC [cWW][XIX] 10.73 55.14; 47.79 7.35 -11.97 0.16 18.1
tmRNA 3IZ4 281!A:311!A C:U WC_mo [cWW][XVIII] 11.11 48.37; 35.33 13.03 -11.34 0.38 29.45
tmRNA 3IZ4 282!A:310!A G:C WC [cWW][XIX] 10.83 49.65; 52.22 2.58 -10.34 0.26 17.44
tmRNA 3IZ4 283!A:309!A U:A WC [cWW][XX] 11.21 46.29; 55.05 8.75 1.37 0.05 5.81
tmRNA 3IZ4 284!A:308!A C:G WC [cWW][XIX] 10.6 57.41; 48.81 8.6 -0.63 0.06 14.48
tmRNA 3IZ4 285!A:307!A C:A S [tSH][-] 10.14 95.0; 10.71 84.29 -50.83 1.65 33.04
tmRNA 3IZ4 297!A:302!A G:U rH*_2 [tHW][-] 12.1 78.94; 36.85 42.09 58.19 0.93 38.82
tmRNA 3IZ4 351!A:367!A G:C WC [cWW][XIX] 11.11 49.95; 50.23 0.28 -10.13 0.18 16.26
tmRNA 3IZ4 352!A:366!A C:G WC [cWW][XIX] 10.59 57.11; 51.32 5.79 -15.95 0.44 27.05
tmRNA 3IZ4 353!A:365!A G:C WC [cWW][XIX] 10.59 52.02; 58.86 6.84 6.83 0.39 9.61
tmRNA 3IZ4 354!A:364!A G:C WC [cWW][XIX] 10.86 45.91; 55.2 9.28 -6.26 0.16 10.57
tmRNA 3IZ4 355!A:363!A G:C WC [cWW][XIX] 10.78 51.16; 54.17 3.01 -6.26 0.16 14.76
tmRNA 3IZ4 356!A:360!A U:A rH_1 [tWH][XXIV] 10.03 33.44; 14.86 18.57 141.49 0.1 12.85