Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 488D BPC Identified: 17 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
HH_ribozyme 488D 25!A:15!D G:C Wb* [---][-] 12.21 51.4; 33.21 18.19 -41.32 0.62 29.86
HH_ribozyme 488D 24!A:14!D U:A WC [cWW][XX] 10.67 57.66; 52.4 5.25 -21.62 1.0 18.77
HH_ribozyme 488D 23!A:13!D G:C WC [cWW][XIX] 11.02 56.27; 43.1 13.18 -9.94 0.61 5.55
HH_ribozyme 488D 22!A:12!D G:C WC [cWW][XIX] 10.31 54.28; 52.14 2.14 -17.02 0.14 22.84
HH_ribozyme 488D 21!A:11!D U:A WC [cWW][XX] 9.85 55.07; 65.43 10.36 3.11 0.19 7.34
HH_ribozyme 488D 30!A:170!D C:C Wb [cWW][-] 9.66 66.07; 35.93 30.14 -18.3 0.26 22.19
HH_ribozyme 488D 50!A:152!D G:C rS(bs:O2-O2*) [---][-] 7.1 166.02; 100.66 65.36 -51.65 0.06 13.83
HH_ribozyme 488D 80!A:130!D G:A S [tSH][XI] 9.15 106.06; 14.87 91.2 -72.66 0.57 29.94
HH_ribozyme 488D 101!A:111!D G:C WC [cWW][XIX] 11.21 57.24; 49.86 7.39 -17.32 0.49 21.23
HH_ribozyme 488D 102!A:112!D G:C WC [cWW][XIX] 10.14 49.3; 54.69 5.39 -17.81 0.54 24.14
HH_ribozyme 488D 103!A:113!D C:G WC [cWW][XIX] 11.22 43.78; 51.19 7.4 -24.24 0.89 18.86
HH_ribozyme 488D 104!A:114!D C:G WC_Mo [cWW][XIX] 11.48 54.75; 62.79 8.05 -15.88 0.18 25.35
HH_ribozyme 488D 151!D:161!D A:U WC_mo [cWW][XX] 13.08 35.02; 42.11 7.08 -1.09 0.99 27.5
HH_ribozyme 488D 152!D:162!D C:G Wb* [---][-] 11.52 33.16; 58.82 25.66 -26.65 1.01 23.77
HH_ribozyme 488D 153!D:163!D U:A WC [cWW][XX] 10.82 51.26; 52.25 0.99 -13.59 1.23 5.15
HH_ribozyme 488D 154!D:164!D C:G WC [cWW][XIX] 10.85 48.2; 61.76 13.56 -11.31 0.52 19.99
HH_ribozyme 488D 31L!D:34L!D G:A S_mo [tSH][XI] 9.7 82.3; 24.46 57.85 -168.7 1.31 25.93