LOCUS E.coli 2717 bp RNA RNA ~?~???? DEFINITION Escherichia coli. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Organism information Culture collection: ? Sequence information (bases 1 to 2717) Corresponding GenBank entry: J01695 Phylo:Eubacteria,Purple,gamma,3 BASE COUNT 389 a 352 c 487 g 314 t 1175 others ORIGIN 1 |--------- --AAAUUGAA GAG-UU(U-G A)UCAU|GGC UCAGAUUGAA CGC-UGGCGG 61 CAGGCCU--A ACACAUGCAA GUCGAACG-G U-------AA CAG-GAAGAA G(CU------ 121 ---------- --UG------ )CUUCUUU-- -GCUG|---- ------AC-G AGU--GGCGG 181 ACGGGUGAGU AA-UGUCUGG GA-AACUGC- CUGA------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------U 301 GGA------- --GGGGGAUA ACUA------ ---------- --------CU G(GAAA)CGG 361 -UAGCUAAUA CC-GCAU-AA ---------- ---------- -------C-- --------GU 421 C-------(G CAA---)--- ----GAC--- ---CAAA--- ---------- ---------- 481 GAGGGG-GA- -CC---(--- -------UUC G------)-- ----GG-|-C CUCUUGCCAU 541 CGGA-UGU|G -CCCAGAU|- GGGAUUA-GC UAGUAGG-UG -GG(G-UAAC GG)-CUCACC 601 UA|GGCGACG AU-CCCUAGC UG|GUCU(GA GA)GGAUGAC CAGC|CACAC UGGAA(CUGA 661 GACACG)GUC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUAUUGCA-C 721 AAU-GGGC-( -GCAA)-GCC U-GAUGCA|G CCAUGCCGCG UGUAUGAAGA AGGCC(---U 781 UCG--)GG-U U--GUAAAGU AC|UUUC-AG CGGGGAGGAA GGGAGUAAAG (UUAAUA-C) 841 CUUUGCUCAU UGACG-UU-A CCC-GCAGAA -GAAGCACC- GGCU-AACU- CCGUG(CCA- 901 -GCAGCC-GC GGU---AA-) UACGGAG|GG UGCAAGCGUU AA-UCGGAAU UACUGGGC|G 961 UAAAGCGCAC GCAGGCG|GU UUGUUAAG-| UCA-GAUGUG AAAUCCCCGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC UGGG-AA-CU GCAUC--UGA -UAC-U-GGC -AA-G-CUUG AG-UC-UCGU 1141 A-----GAGG GGGGU|AGAA UUCCAGG-UG UAGCG(GUGA AA)UGCGUAG AGA---UCUG 1201 GAGGAAUACC GGU---GGC( GAAG)GC-G- GCCCC-CUG- GACGA--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- GACUGACGCU 1321 -CAG-GUGCG AAAGCGUGGG GAGCAAACAG G(AUU-A-GA UAC)-CCUGG UAG--UC-CA 1381 C-GCCGUAAA CGAUGUCG-- --AC-UU|GG AG-GUUGUGC C--------- --------(- 1441 -------cuu ga---)---- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- --GGCGUGGC UUCC-GGAGC (UAAC)GCGU 1561 -UAAGUCGAC |C|GCCUGGG GAGUACGGCC (GCAA)GGUU AAAACUCAAA UGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU-GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCUGGUCUUG ACA----UC| -CA-CGG--A A------GUU UUCA-----( 1741 GAG-A-)UGA GA-AUG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CCGU GAGA|C|AGG UGCUGCAUG| GCU-GUCGUC A|-G-CUCGU 1861 |GUU(GUGA) AAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUA| UCCUUU-G-U 1921 UGCC-AGCGG ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --uccgg--- )------CCG 2101 |GGAACUCAA AGGAGACUGC CAGU(GAUAA ----)----- ---------- ---------A 2161 CUGGAGGAAG GUGGGGAUGA CGUC-AA--G UCAUCAUGGC CCUUACGACC AGGGCUAC-A 2221 CACGUGCUAC AAUGGC--GC AUACAAAGAG AA----GCGA CCUC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GAGC-A AGCGGACC-U CAU-AAAGUG 2341 CGUCGUAGUC CGGAUUGGAG UC(--UGCAA CUC)GACUCC AUGAAGUCGG AAUCGCU--- 2401 ---AGUAAU- CGUGGA(UC- -AGA-AU)GC CACGGUGAAU AC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGGAGUGGG- UUGCAAAAGA 2521 AGUAGGU--- AGCUU-AACC -(-----uuc g------)-G G-AGG-GCG- CU-UACC-AC 2581 UU-UGUGAUU CAUGACUGGG GUGAAGUCGU AACAAGGUAA CCGUAGG(GG AA)CCUGCGG 2641 UUGGAUCACC UCCUUA--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS 2.11.2-CHL 2717 bp RNA RNA 09-JAN-1999 DEFINITION 2.11.2 CHLOROPLASTS_AND_CYANELLES. ACCESSION No information KEYWORDS No information. SOURCE 2.11.2 CHLOROPLASTS_AND_CYANELLES. ORGANISM 2.11.2 CHLOROPLASTS_AND_CYANELLES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 2717 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~-----~ ~~~~~~~~~~ ~~~~~~---- -----~~~~~ ~~~--~~~~~ 181 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--~ 301 ~~~------- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 -~~~~~~~~~ ~~~~~~~~~~ ---------- ---------- -------~~~ ~~~~~~~~~~ 421 ~~------~~ ~~~~~-~~-- ----~~~~~~ ~~~~~~~~~~ ~~-------- ---------- 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~-~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~-~~~~~ -~--~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 721 ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 781 ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 901 ~~~~~~~-~~ ~~~---~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~|~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~------ 1081 ---~~~~~~~ ~~~~~~~-~~ ~~~~~--~~~ ~~~~~~-~~~ -~~-~-~~~~ ~~-~~~~~~~ 1141 ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~---~~~~ 1201 ~~~~~~~~~~ ~~~~--~~~~ ~~~~~~~-~- ~~~~~-~~~~ ~~~~~--~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ~~~~~~~~~~ 1321 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~--~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~-- --~~-~~~~~ ~~-~~~~~~~ ~~~~~~~--- --------~- 1441 -------~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---------- 1501 ---------- ---------- ---------- --~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 1561 -~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~---~~| ~~~-~~~~~~ ~------~~~ ~~~~~~---~ 1741 ~~~-~~~~~~ ~~-~~~~~~~ ~~~~~~~--- ----~~~~~~ -----~~--- -----~~~~~ 1801 ~~-------- -----~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~-~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ 1921 ~~~~-~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------~ --~~~~~--- ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ----~~---- ---~~~~~~~ ~~~------~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 2221 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~---~~~~ ~~~~------ ---------- 2281 ----~----~ ~~~-~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~--~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- 2401 ---~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~-- ---------- 2461 -------~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~~ ~-~~~~~~~~ ~~~~~~~-~~ 2581 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS 2.11.2.1 2717 bp RNA RNA 09-JAN-1999 DEFINITION 2.11.2.1 OTHER_CHLOROPLASTS. ACCESSION No information KEYWORDS No information. SOURCE 2.11.2.1 OTHER_CHLOROPLASTS. ORGANISM 2.11.2.1 OTHER_CHLOROPLASTS. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 2717 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~-----~ ~~~~~~~~~~ ~~~~~~---- -----~~~~~ ~~~--~~~~~ 181 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--~ 301 ~~~------- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 -~~~~~~~~~ ~~~~~~~~~~ ---------- ---------- -------~~~ ~~~~~~~~~~ 421 ~~------~~ ~~~~~-~~-- ----~~~~~~ ~~~~~~~~~~ ~~-------- ---------- 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~-~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~-~~~~~ -~--~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 721 ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 781 ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 901 ~~~~~~~-~~ ~~~---~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~|~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~------ 1081 ---~~~~~~~ ~~~~~~~-~~ ~~~~~--~~~ ~~~~~~-~~~ -~~-~-~~~~ ~~-~~~~~~~ 1141 ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~---~~~~ 1201 ~~~~~~~~~~ ~~~~--~~~~ ~~~~~~~-~- ~~~~~-~~~~ ~~~~~--~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ~~~~~~~~~~ 1321 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~--~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~-- --~~-~~~~~ ~~-~~~~~~~ ~~~~~~~--- --------~- 1441 -------~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---------- 1501 ---------- ---------- ---------- --~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 1561 -~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~---~~| ~~~-~~~~~~ ~------~~~ ~~~~~~---~ 1741 ~~~-~~~~~~ ~~-~~~~~~~ ~~~~~~~--- ----~~~~~~ -----~~--- -----~~~~~ 1801 ~~-------- -----~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~-~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ 1921 ~~~~-~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------~ --~~~~~--- ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ----~~---- ---~~~~~~~ ~~~------~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 2221 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~---~~~~ ~~~~------ ---------- 2281 ----~----~ ~~~-~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~--~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- 2401 ---~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~-- ---------- 2461 -------~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~~ ~-~~~~~~~~ ~~~~~~~-~~ 2581 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS (1)-Eukary 2717 bp RNA RNA 17-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 2717 others ORIGIN 1 |......... .......... ...-...... .......... .......... .......... 61 .......... .......... .....--.-. .......... ...------- ---------- 121 ---------- ---------- ---------. ......---- -----..... ...--...-- 181 ---------- -------... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......--. 301 ...------- --....---- ---------- ---....... .....---.. ....--.... 361 -......... .-...-..-. ---------- ---------- -------... ..-....... 421 ..------.. ........-- ----...... .......... ..-------- ---------- 481 .......... .-..-....- .......--. .......... .......... ........-. 541 ....-..... -......... .........- -......... .-...-.... .......... 601 ......---- -.-.....|. .......... ...|.....| ...--..... .......... 661 ......-... .......-.. |...-..... -.--....-- -......... .....-..-. 721 .......... -...------ ---------- ---------- ---------- ---------- 781 ---------- ----...... .....----- --........ ..-.....-. |..-----.. 841 .--------- ------.... ......-... .......... .........- .........- 901 --.....-.. ...---..-| ......|... .-........ ..-....... ........|. 961 .......... .......... ........-. |..-...... .......... .......... 1021 .......... .......... .......... .......... .......... ....------ 1081 ---...-..- .......-.| .....---.. ......-... -..-.----. .|-....... 1141 ..----.... .......... ....------ -......-.. ...------- ---------- 1201 ---------- ---------- |--------- ---------- ...-.--... .......... 1261 .......... .......... .......... .........- ---------- ....-..... 1321 -....|.... .......... .......... .....-.... .-------.. .|.--..... 1381 ...-...-.. ........-- --..-..... ..-..-.... .-.....--- ---------- 1441 --------.. ..---..... ....--.--. ....----.- -..--..--- ---------- 1501 ---------- ---------- ---------- --....---- --------.. .......... 1561 -....|.... ..|..-.... .......... .....-.... .......... .......... 1621 ......-... .......... ......-... .......... .......... .....----- 1681 -.-------. .......... ....---..| ...-...... .------... ......---. 1741 ...-...... ..-....... .......--- ----...--- ------.--- -----..... 1801 ..-------- -----..... .--.|..... ..---..... ..-------- --........ 1861 .....--.-- .--....... ...------- ---------. .-........ ......-... 1921 ....-..... .......-.- -......... .........- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------. .......--- ...--..... 2101 .......... ....|||... .......... ----..---- ---....... ...------. 2161 .......... .......... .......--. .......... .......... ........-. 2221 .......... .......-.. .......... ...---.... ....------ ---------- 2281 ----.----. ...-...... .......... .......... ........-. .......... 2341 .......... .......... ...--..... .......... .......... .......--- 2401 ---....... .......... -......... .......... ...-....-- ---------- 2461 -------... .......... .......... .......... .......... .......... 2521 .......--- .......... .......... .......... .-........ .......-.. 2581 ..-....... .......... .......... .......... .......... .......... 2641 .......... .......-.. .......... .......... .......... .......... 2701 .......... ......| // LOCUS (2)-Euglen 2717 bp RNA RNA 17-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 2717 others ORIGIN 1 |......... .......... ...-...... .......... .......... .......... 61 .......... .......... .....--.-. .......... ...------- ---------- 121 ---------- ---------- ---------. ......---- -----..... ...--...-- 181 ---------- -------... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......--. 301 ...------- --....---- ---------- ---....... .....---.. ....--.... 361 -......... .-...-..-. ---------- ---------- -------... ..-....... 421 ..------.. ........-- ----...... .......... ..-------- ---------- 481 .......... .-..-....- .......--. .......... .......... ........-. 541 ....-..... -......... .........- -......... .-...-.... .......... 601 ......---- -.-.....|. .......... ...|.....| ...--..... .......... 661 ......-... .......-.. |...-..... -.--....-- -......... .....-..-. 721 .......... -...------ ---------- ---------- ---------- ---------- 781 ---------- ----...... .....----- --........ ..-.....-. |..-----.. 841 .--------- ------.... ......-... .......... .........- .........- 901 --.....-.. ...---..-| ......|... .-........ ..-....... ........|. 961 .......... .......... ........-. |..-...... .......... .......... 1021 .......... .......... .......... .......... .......... ....------ 1081 ---...-..- .......-.| .....---.. ......-... -..-.----. .|-....... 1141 ..----.... .......... ....------ -......-.. ...------- ---------- 1201 ---------- ---------- |--------- ---------- ...-.--... .......... 1261 .......... .......... .......... .........- ---------- ....-..... 1321 -....|.... .......... .......... .....-.... .-------.. .|.--..... 1381 ...-...-.. ........-- --..-..... ..-..-.... .-.....--- ---------- 1441 --------.. ..---..... ....--.--. ....----.- -..--..--- ---------- 1501 ---------- ---------- ---------- --....---- --------.. .......... 1561 -....|.... ..|..-.... .......... .....-.... .......... .......... 1621 ......-... .......... ......-... .......... .......... .....----- 1681 -.-------. .......... ....---..| ...-...... .------... ......---. 1741 ...-...... ..-....... .......--- ----...--- ------.--- -----..... 1801 ..-------- -----..... .--.|..... ..---..... ..-------- --........ 1861 .....--.-- .--....... ...------- ---------. .-........ ......-... 1921 ....-..... .......-.- -......... .........- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------. .......--- ...--..... 2101 .......... ....|||... .......... ----..---- ---....... ...------. 2161 .......... .......... .......--. .......... .......... ........-. 2221 .......... .......-.. .......... ...---.... ....------ ---------- 2281 ----.----. ...-...... .......... .......... ........-. .......... 2341 .......... .......... ...--..... .......... .......... .......--- 2401 ---....... .......... -......... .......... ...-....-- ---------- 2461 -------... .......... .......... .......... .......... .......... 2521 .......--- .......... .......... .......... .-........ .......-.. 2581 ..-....... .......... .......... .......... .......... .......... 2641 .......... .......-.. .......... .......... .......... .......... 2701 .......... ......| // LOCUS chl.A.long 2717 bp RNA RNA 11-JAN-191 DEFINITION Astasia longa chloroplast. ACCESSION No information KEYWORDS No information. SOURCE Astasia longa chloroplast. ORGANISM Astasia longa chloroplast. REFERENCE 1 AUTHORS No information JOURNAL EMBL ALCRDNA X14386 STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X14386 BASE COUNT 469 a 234 c 382 g 435 t 1197 others ORIGIN 1 |--------- GUGACAUGAA GAG-UU(U-G A)UCCU|UGC UCAGGAUUAA CGC-UGGCGG 61 UAUGCAU--A ACACAUGCAA GUUGAACG|G A--------- ----cucguu u(ua------ 121 ---------- --ua------ )aaaugag-- ---------- ------UU-- AGU--AGCAG 181 ACGGGUGAGU AA-UAUGUGA GA-AUCUAC- GUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGU------- --GGGGGAUA ACUU------ ---------- --------AU A(GAAA)UAU 361 -UUGUUAAUA CC-CCAU-AA ---------- ---------- ---------- --------uu 421 g-------(u gcua--)--- ----uaa--- ---agua--- ---------- ---------- 481 AAA------- ------(--- -------auu u------)-- -------|-- --UUUGCCUA 541 AACA-UGA|G -CUUGCAU|- CUGAUUA-GU UUGUUGG-UU -GG(G-UAAU GG)-CUUACC 601 AA|GACUUUG AU|CAGUAGC UG|AUUU(GA GA)GAAUGGU CAGC|CACAC UGGAA(UUGA 661 GA-ACG)GAA CAGA-C--UC C(UA-UG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GAGU-( -GAAA)-ACU U-GACGGA|G CAAUACCGCG UGUAGGAAGA AGGCU(---G 781 UAU-U)AG-U U--GUAAACU UC|UUUU-UU CAAAAAAGAA UA-------- (--------) 841 --------AG UGACG|UU-A UUU-GAAGAA -UAAGCAUC| GGCU-AAUU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGGG|GA UGCAAGUGUU AU-CCGGAAU UAUUGGGC|G 961 UAAAGGGUCA GGAGGUG|GU AUUAUGUG-| UUU-AAUGUU AAAUGUUAAA GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACU UUAU-AA-AG GCAUU--GAA -AAC-U|GUA -AU-A-CUAG AG-UA|UGGU 1141 A-----GAGG UAAAG|GGAA UUUCCAG-UG UAGCG(GUGA AA)UGCGUAA AUA---UUGG 1201 AAAGAACACC AAA---GGC( GAAG)GC|A| CUUUG-CUA| GGCCA--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACAUU 1321 |GAG-AGACU AAAGCUAAGG UAGCAAACAG G(AUU-A-GA UAC)-CCUGG UAG-|UC-UU 1381 A-GCCGUAAA CUAUGGAU-- --AC|UA|AG UU-AUGaaga uucuguauuu auaugugu(- 1441 -------uag au---)auau ---------- ---------- ---------- ---------- 1501 |--------- --------au auagauauga -|ggaugCAU UUCU-AAAGU (UAAC)ACGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUAUUCUU (GCAA)AAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACA)CG 1681 AAAAACCUUA CCAAGACUUG ACA----UG| -CU-AGA--G Ua----aaug auua-----( 1741 uua-u-)uaa uc-aug---u a--a------ -----uuaaa ---------- ------aaa- 1801 ---------- -----|UCUA GGCA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |AUC(GUGA) GAUGUAUGG( UUUAGU)CCU AUAACGAGCG CAACCCUUA| UCUUUA-G-U 1921 UAa------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --auuug--- )--------- 2101 |--UAUAUUA AAGAaACUGC UGUU(GACAA ----)----- ---------- ---------A 2161 UCAGAGGAAG GAGAGGAUGA CGUC-AA--G UCAUCAUGCC CUUUAUGUCU UGGGCUAC-A 2221 CACGUGCUAC AAUGGU--UA AGACAAUUAG UU----GCAA ACUU------ ---------- 2281 ----(----G UAA-)----- ---------- ----AAGU-G AGCUAAUC-U A-U-AAACUU 2341 AAUCUAAGUU CGGAUUGUAG GC(--UGAAA CUC)GUCUAC AUGAAGUUGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCUAU)AC GGCGGUGAAU AU--GUU--- ---------- 2461 -------CUC GGGCCUUGUA CACACCGCCC GUCACACCAA GGAAGUUAG- UUGUGUUUGA 2521 UAUUGUU--- UUUUU-AACC -(-----uuu u------)-G G-GAA-AUG- AU-AAUU-AG 2581 GG-CCUGGCU GGUGACCGUG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAAAAAU GUUU----|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.E.grac 2717 bp RNA RNA 19-JAN-1982 DEFINITION chloroplast,Euglena gracilis. ACCESSION No information KEYWORDS No information. SOURCE chloroplast,Euglena gracilis. ORGANISM chloroplast,Euglena gracilis. REFERENCE 1 AUTHORS No information JOURNAL Graf,,,Kossel NAR 10:6369(1982) FINISH************** STANDARD No information COMMENTS Organism information Culture collection: ???? Sequence information (bases 1 to 2717) Corresponding GenBank entry: X12890 V00159 Phylo:Eubacteria,Cyanobacteria,chloroplast BASE COUNT 425 a 281 c 421 g 364 t 1226 others ORIGIN 1 |--------- UGGAAAUGAC GAG-UU(U-G A)UCCU|UGC UCAGGGUGAA CGC-UGGCGG 61 UAUGCUU--A ACACAUGCAA GUUGAACG|A A--------- ----auuacu a(gc------ 121 ---------- --aa------ )uaguaau-- ---------- ------UU-- AGU--GGCGG 181 ACGGGUGAGU AA-UAUGUAA GA-AUCUGC- GCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGC------- --GAGGAAUA ACAG------ ---------- --------AU G(GAAA)CGU 361 -UUGCUAAUG CC-UCAU-AA ---------- ---------- ---------- --------uu 421 u-------(a cu----)--- ----aga--- ---ucuau-- ---------- ---------g 481 ugagua-g-- -cu---(--- --aguu-aaa g------)-- ----ag-|-a auUUCGCCUA 541 GGCA-UGA|G -CUUGCAU|- CUGAUUA-GC UUGUUGG-UG -AG(G-UAAA GG)-CUUACC 601 AA|GGCGACG AU|CAGUAGC UG|AUUU(GA GA)GGAUGAU CAGC|CACAC UGGGA(UUGA 661 GA-ACG)GAA CAGA-C--UU C(UA-CG)GA -A--GGCAG- CAGUGAGG-A AUUUUCCG-C 721 AAU-GGGC-( -GCAA)-GCC U-GACGGA|G CAAUACCGCG UGAAGGAAGA CGGCC(---U 781 UUG--)GG-U U--GAAAACC UC|UUUU-CU CAAAGAAGAA GA-------- (--------) 841 --------AA UGACG|GU-A UUU-GAGGAA -UAAGCAUC| GGCU-AAUU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGGA|GA UGCGAGCGUU AU-CCGGAAU UAUUGGGC|G 961 UAAAGAGUUU GUAGGCG|GU CAAGUGUG-| UUU-AAUGUU AAAAGUCAAA GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACU UUGG-AA-GG GCAUU--AAA -AAC-U|GCU -AG-A-CUUG AG-UA|UGGU 1141 A-----GGGG UGAAG|GGAA UUUCCAG-UG UAGCG(GUGA AA)UGCGUAG AGA---UUGG 1201 AAAGAACACC AAU---GGC( GAAG)GC|A| CUUUU-CUA| GGCCA--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACGCU 1321 |GAG-AAACG AAAGCUGAGG GAGCAAACAG G(AUU-A-GA UAC)-CCUG- UAG-|UC-UU 1381 G-GCCGUAAA CUAUGGAU-- --AC|UA|AG UG-GUGC--- ---------- --------(- 1441 -------uga aagu-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|----GCAC UGCU-GUAGU (UAAC)ACGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGCUU (GCAC)AAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACA)CG 1681 AAGAACCUUA CCAGGAUUUG ACA---gga| uCU-AGG--a ---------a guuu-----( 1741 GAA-A-)gaa cg-caG---U A--CC----- ----(UUCG- -----)---- -----GGUA- 1801 ---------- -----|UCUA GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUU| UUUUUA-A-U 1921 UAAC------ ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --gcuu---- )--------- 2101 |GUCA-UUUA GAAAUACUGC UGGU(U-AUU ----)----- ---------- ---------A 2161 CCGGAGGAAG GUGAGGACGA CGUC-AA--G UCAUCAUGCC CCUUAUAUCC UGGGCUAC-A 2221 CACGUGCUAC AAUGGU--UA AGACAAUAAG UU----GCAA UUUU------ ---------- 2281 ----(----G UGA-)----- ---------- ----AAAU-G AGCUAAUC-U U-a-AAACUU 2341 AGCCUAAGUU CGGAUUGUAG GC(--UGAAA CUC)GCCUAC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCuAU)AC GGCGGUGAAU AC--GUU--- ---------- 2461 -------CUC GGGCCUUGUA CACACCGCCC GUCACACCAU GGAAGUCGG- CUGUGCCCGA 2521 AGUUAUU--- AUCUU-GCCU -(-----gaa a------)-A G-AGG-GAA- AU-ACCU-AA 2581 GG-CCUGGCU GGUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGUGG 2641 CUGGAACAaC UCC-----|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS (2)-Eukary 2717 bp RNA RNA 17-JAN-1994 DEFINITION Eukaryote Crown Group. ACCESSION No information KEYWORDS No information. SOURCE Eukaryote Crown Group. ORGANISM Eukaryote Crown Group. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 2717 others ORIGIN 1 |......... .......... ...-...... .......... .......... .......... 61 .......... .......... .....--.-. .......... ...------- ---------- 121 ---------- ---------- ---------. ......---- -----..... ...--...-- 181 ---------- -------... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......--. 301 ...------- --....---- ---------- ---....... .....---.. ....--.... 361 -......... .-...-..-. ---------- ---------- -------... ..-....... 421 ..------.. ........-- ----...... .......... ..-------- ---------- 481 .......... .-..-....- .......--. .......... .......... ........-. 541 ....-..... -......... .........- -......... .-...-.... .......... 601 ......---- -.-.....|. .......... ...|.....| ...--..... .......... 661 ......-... .......-.. |...-..... -.--....-- -......... .....-..-. 721 .......... -...------ ---------- ---------- ---------- ---------- 781 ---------- ----...... .....----- --........ ..-.....-. |..-----.. 841 .--------- ------.... ......-... .......... .........- .........- 901 --.....-.. ...---..-| ......|... .-........ ..-....... ........|. 961 .......... .......... ........-. |..-...... .......... .......... 1021 .......... .......... .......... .......... .......... ....------ 1081 ---...-..- .......-.| .....---.. ......-... -..-.----. .|-....... 1141 ..----.... .......... ....------ -......-.. ...------- ---------- 1201 ---------- ---------- |--------- ---------- ...-.--... .......... 1261 .......... .......... .......... .........- ---------- ....-..... 1321 -....|.... .......... .......... .....-.... .-------.. .|.--..... 1381 ...-...-.. ........-- --..-..... ..-..-.... .-.....--- ---------- 1441 --------.. ..---..... ....--.--. ....----.- -..--..--- ---------- 1501 ---------- ---------- ---------- --....---- --------.. .......... 1561 -....|.... ..|..-.... .......... .....-.... .......... .......... 1621 ......-... .......... ......-... .......... .......... .....----- 1681 -.-------. .......... ....---..| ...-...... .------... ......---. 1741 ...-...... ..-....... .......--- ----...--- ------.--- -----..... 1801 ..-------- -----..... .--.|..... ..---..... ..-------- --........ 1861 .....--.-- .--....... ...------- ---------. .-........ ......-... 1921 ....-..... .......-.- -......... .........- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------. .......--- ...--..... 2101 .......... ....|||... .......... ----..---- ---....... ...------. 2161 .......... .......... .......--. .......... .......... ........-. 2221 .......... .......-.. .......... ...---.... ....------ ---------- 2281 ----.----. ...-...... .......... .......... ........-. .......... 2341 .......... .......... ...--..... .......... .......... .......--- 2401 ---....... .......... -......... .......... ...-....-- ---------- 2461 -------... .......... .......... .......... .......... .......... 2521 .......--- .......... .......... .......... .-........ .......-.. 2581 ..-....... .......... .......... .......... .......... .......... 2641 .......... .......-.. .......... .......... .......... .......... 2701 .......... ......| // LOCUS (3)-Alveol 2717 bp RNA RNA 17-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 2717 others ORIGIN 1 |......... .......... ...-...... .......... .......... .......... 61 .......... .......... .....--.-. .......... ...------- ---------- 121 ---------- ---------- ---------. ......---- -----..... ...--...-- 181 ---------- -------... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......--. 301 ...------- --....---- ---------- ---....... .....---.. ....--.... 361 -......... .-...-..-. ---------- ---------- -------... ..-....... 421 ..------.. ........-- ----...... .......... ..-------- ---------- 481 .......... .-..-....- .......--. .......... .......... ........-. 541 ....-..... -......... .........- -......... .-...-.... .......... 601 ......---- -.-.....|. .......... ...|.....| ...--..... .......... 661 ......-... .......-.. |...-..... -.--....-- -......... .....-..-. 721 .......... -...------ ---------- ---------- ---------- ---------- 781 ---------- ----...... .....----- --........ ..-.....-. |..-----.. 841 .--------- ------.... ......-... .......... .........- .........- 901 --.....-.. ...---..-| ......|... .-........ ..-....... ........|. 961 .......... .......... ........-. |..-...... .......... .......... 1021 .......... .......... .......... .......... .......... ....------ 1081 ---...-..- .......-.| .....---.. ......-... -..-.----. .|-....... 1141 ..----.... .......... ....------ -......-.. ...------- ---------- 1201 ---------- ---------- |--------- ---------- ...-.--... .......... 1261 .......... .......... .......... .........- ---------- ....-..... 1321 -....|.... .......... .......... .....-.... .-------.. .|.--..... 1381 ...-...-.. ........-- --..-..... ..-..-.... .-.....--- ---------- 1441 --------.. ..---..... ....--.--. ....----.- -..--..--- ---------- 1501 ---------- ---------- ---------- --....---- --------.. .......... 1561 -....|.... ..|..-.... .......... .....-.... .......... .......... 1621 ......-... .......... ......-... .......... .......... .....----- 1681 -.-------. .......... ....---..| ...-...... .------... ......---. 1741 ...-...... ..-....... .......--- ----...--- ------.--- -----..... 1801 ..-------- -----..... .--.|..... ..---..... ..-------- --........ 1861 .....--.-- .--....... ...------- ---------. .-........ ......-... 1921 ....-..... .......-.- -......... .........- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------. .......--- ...--..... 2101 .......... ....|||... .......... ----..---- ---....... ...------. 2161 .......... .......... .......--. .......... .......... ........-. 2221 .......... .......-.. .......... ...---.... ....------ ---------- 2281 ----.----. ...-...... .......... .......... ........-. .......... 2341 .......... .......... ...--..... .......... .......... .......--- 2401 ---....... .......... -......... .......... ...-....-- ---------- 2461 -------... .......... .......... .......... .......... .......... 2521 .......--- .......... .......... .......... .-........ .......-.. 2581 ..-....... .......... .......... .......... .......... .......... 2641 .......... .......-.. .......... .......... .......... .......... 2701 .......... ......| // LOCUS pl.E.max.1 2717 bp RNA RNA 12-DEC-1998 DEFINITION Chloroplast Eimeria maxima. str. RNA, partial sequence 1 small subunit ribosomal RNA gene, plastid gene for plastid; . ACCESSION AF0409 5 KEYWORDS . SOURCE Chloroplast Eimeria maxima. str. RNA, partial sequence 1 small subunit ribosomal RNA gene, plastid gene for plastid. ORGANISM Chloroplast Eimeria maxima. REFERENCE 1 (bases 1 to 1013) AUTHORS Lang-Unnasch,N., Reith,M.E., Munholland,J. and Barta,J.R. TITLE phylum Apicomplexa Plastids are widespread and ancient in parasites of the JOURNAL Int. J. Parasitol. 28 (11), 1743-1754 (1998) STANDARD No information REFERENCE 2 (bases 1 to 1013) AUTHORS Lang-Unnasch,N., Reith,M.E. and Munholland,J. TITLE Direct Submission JOURNAL Submitted (05-JAN-1998) Geographic Medicine, University of Alabama at Birmingham, 845 South 19th St., Birmingham, AL 35294-2170, USA STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: AF040975 BASE COUNT 351 a 149 c 211 g 302 t 1704 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~|~~~ ~~~~~~~~~~ ~~~-~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~-~~~~~~ ~(~~------ 121 ---------- --~~~~~~~~ )~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ 361 ~~~~~~~~~~ ~~-~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- --------~~ 421 ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~--- ---~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~-~~- -~~---(~~~ ~~~~~~-~~~ ~------)~~ ~---~~-|-~ ~~~~~~~~~~ 541 ~~~~~~~~|~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~-~~ -~~(~~~~~~ ~~)-~~~~~~ 601 ~~|~~~~~~~ ~~|~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~|~~~~~ ~~~~~(~~~~ 661 ~~~~~~)~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 721 ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 781 ~~~~~)~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~-~) 841 ~~~~~~~~~~ ~~~~~|~~~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~GUG(CCA- 901 -GCAGCA|GC GGU---AA-) UACGGGG|GA UACAAGCGUU AU-CCGGAAU UACUGGGC|G 961 UAAAGCGUAU GUAGGUG|G- uuuuaaua-| uau-uuuuau auaaaaaaaa c-(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 -uauau)auu uguu-uu-ua auaaa--aaa --au-u|auu -aa-a-cuag ag-uu|uguu 1141 a-----gggg uaaaA|GGAA UUUUUUG-AG GAGUA(GUGA AA)UGCGAAG AUA---CAAA 1201 AAAGAAGACC AAA---AGC( GAAG)GC|A| UUUUA-CUG| GAGCA--G-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACACU 1321 |GAU-AUACG AAAGUUAAGG UCGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-UU 1381 A-ACUGUAAA CUAUGGAU-- --AC|UC|GG AA-UAAAAUA ---------- --------(- 1441 -------uua uauua)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-UAUCUUA UUCC-uUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGAG UAGUACGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCUC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACA)CG 1681 AAGAACCUUA CCAGAguuug aaa----ua| -uu-ugu--u a-----uuaa aaaauuaau( 1741 aau-u-)uuu ua-uaau--- ---------- ----(----- -----)---- ---------- 1801 ---------- -----|uaca aaUA|C|AGG AGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GUAACGAGCG UAGCCCUUA| uuuaa----a 1921 guu----aac ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( -uaucuuuaa )------aaa 2101 |cagccuaua uuuauu---a uaua(aaua- ----)----- ---------- ---------a 2161 gg--AGGAAG GAAUGGAAAA CGUC-AA--G UCCUCAUGCC CUUUAUACUC UGGGCUAU-A 2221 CACGUGCUAC AAUGGA--UG GUACAAUaaa au----uuga uuug--auau uaaagaaaaa 2281 aauu(-uuuu cuuu)aauuc uauuuguaaa aa--uagaua uaaauaua-u uuu-aaaaac 2341 auuCUUAGUU CGGAACAUAA AU(--UGCAA UUU)AUUUAU GUGAAGCUGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(GC- -AGCCUU)AC GGCGGUGAAU AA--GUC--- ---------- 2461 -------AUC GAGCCUUGUA CACACCGCCC GUCACACCAU GGGAAuuaa- uuauuguuga 2521 aacuucu--- -u-------- -(-----cuu -------)-- -------aa- ga-aaau-aa 2581 au-aagaauu aauaaCUGGG GUGAAGUCGU AACAAGGUAG CCGUA~~(~~ ~~)~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS pl.E.max.2 2717 bp RNA RNA 12-DEC-1998 DEFINITION Chloroplast Eimeria maxima. str. 2 small subunit ribosomal RNA gene, plastid gene for plastid RNA, partial sequence; . ACCESSION AF0409 6 KEYWORDS . SOURCE Chloroplast Eimeria maxima. str. 2 small subunit ribosomal RNA gene, plastid gene for plastid RNA, partial sequence. ORGANISM Chloroplast Eimeria maxima. REFERENCE 1 (bases 1 to 998) AUTHORS Lang-Unnasch,N., Reith,M.E., Munholland,J. and Barta,J.R. TITLE Plastids are widespread and ancient in parasites of the phylum Apicomplexa JOURNAL Int. J. Parasitol. 28 (11), 1743-1754 (1998) STANDARD No information REFERENCE 2 (bases 1 to 998) AUTHORS Lang-Unnasch,N., Reith,M.E. and Munholland,J. TITLE Direct Submission JOURNAL Submitted (05-JAN-1998) Geographic Medicine, University of Alabama at Birmingham, 845 South 19th St., Birmingham, AL 35294-2170, USA STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: AF040976 BASE COUNT 338 a 147 c 212 g 301 t 1719 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~|~~~ ~~~~~~~~~~ ~~~-~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~-~~~~~~ ~(~~------ 121 ---------- --~~~~~~~~ )~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ 361 ~~~~~~~~~~ ~~-~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- --------~~ 421 ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~--- ---~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~-~~- -~~---(~~~ ~~~~~~-~~~ ~------)~~ ~---~~-|-~ ~~~~~~~~~~ 541 ~~~~~~~~|~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~-~~ -~~(~~~~~~ ~~)-~~~~~~ 601 ~~|~~~~~~~ ~~|~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~|~~~~~ ~~~~~(~~~~ 661 ~~~~~~)~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 721 ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 781 ~~~~~)~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~-~) 841 ~~~~~~~~~~ ~~~~~|~~~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~GUG(CCA- 901 -GCAGCA|GC GGU---AA-) UACAGGG|GA UACAAGCGUU AU-CCGGAAU UACUGGGC|G 961 UAAAGCGUAU GCAGGUG|G- uuuuaaua-| uau-uuuuau auaaaaaaaa c-(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 -uauau)auu uguu-uu-ua guaaa--aaa --gu-u|auu -aa-a-cuag ag-uu|uguu 1141 a-----gggg uaaaa|GGAG UUUUUUG-AG GAGUA(GUGA AA)UGCGAAG AUA---CAAA 1201 AAAGAAGACC AAA---AGC( GA--)GC|A| UUUUA-CUG| GAGCA--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACACU 1321 |GAG-AUACG AAAGUUAAGG UCGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-UU 1381 G-ACUGUAAA CUAUGGAU-- --AC|UC|GG AA-UAAAAUA ---------- --------(- 1441 -------ugu auua-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-UAUCUUA UUCC-uUAGC (UAAC)GCGU 1561 -UAAGUAUCA |C|GCCUGAG UAGUACGCUC (GCAA)GAUU GAAACUC--- ----UUGACG 1621 GGGGCUC-GC ACA------- GGCGGU|GGA GCAUGUGGUU UAGUUCG-(A UGUAAAA)CG 1681 AAGAACCUUG CCAGAguuug aaa----ua| -uu-ugu--u ------uuua aaaaauuaa( 1741 uaa-u-)uuu uu-auaau-- ---------- ----(----- -----)---- ---------- 1801 ---------- -----|uaca aaUA|C|AGG AGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUUUUGGG( UUAAGU)CAC GUAACGAGCG UAGCCAUUA| uuuaa----a 1921 guua---ccu ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( a-g-cuuuaa )------aaa 2101 |cagccuaua uuuauu---- auau(aaaua ----)----- ---------- ---------a 2161 gg--AGGAAG GAAUGGAAAA CGUC-AG--G UCUUUAUGCC CUUUAUACUC UGGGCUAU-A 2221 CACGUGCUAC AAUGGA--UG GUACAAUaaa au----uuga uauu------ agagaaaaca 2281 guuu(--uuu cuuu)aauuc uauuuggaaa aa--uagaua uaaauaua-u uuu-aaaaac 2341 auucuuaguu cgaaaCAUAA AU(--UGCAA UUU)AUUUAU UUGAAGCUGG AAUCGCU--- 2401 ---AGUAAC- CGCCGG(GC- -AGUCUU)AC GGCGGUGAAU AA--GUC--- ---------- 2461 -------AUC GAGCCUUCUA CACACCGCCC GUCACACCAU GGGAAuuaa- uuauuguuga 2521 aacuccu--- -u-------- -(-----uuu -------)-- -------aa- ga-acau-aa 2581 au-aagaauu aauaaCUGGG GUGAAGUCGU AACAAGGUAA CCGUA~~(~~ ~~)~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS pl.E.melea 2717 bp RNA RNA 12-DEC-1998 DEFINITION Chloroplast Eimeria meleagrimitis.; . ACCESSION AF0409 0 KEYWORDS . SOURCE Chloroplast Eimeria meleagrimitis. ORGANISM Chloroplast Eimeria meleagrimitis. REFERENCE 1 (bases 1 to 1003) AUTHORS Lang-Unnasch,N., Reith,M.E., Munholland,J. and Barta,J.R. TITLE Plastids are widespread and ancient in parasites of the phylum Apicomplexa JOURNAL Int. J. Parasitol. 28 (11), 1743-1754 (1998) STANDARD No information REFERENCE 2 (bases 1 to 1003) AUTHORS Lang-Unnasch,N., Reith,M.E. and Munholland,J. TITLE Direct Submission JOURNAL Submitted (05-JAN-1998) Geographic Medicine, University of Alabama at Birmingham, 845 South 19th St., Birmingham, AL 35294-2170, USA STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: AF040970 BASE COUNT 343 a 152 c 217 g 291 t 1714 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~|~~~ ~~~~~~~~~~ ~~~-~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~-~~~~~~ ~(~~------ 121 ---------- --~~~~~~~~ )~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ 361 ~~~~~~~~~~ ~~-~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- --------~~ 421 ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~--- ---~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~-~~- -~~---(~~~ ~~~~~~-~~~ ~------)~~ ~---~~-|-~ ~~~~~~~~~~ 541 ~~~~~~~~|~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~-~~ -~~(~~~~~~ ~~)-~~~~~~ 601 ~~|~~~~~~~ ~~|~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~|~~~~~ ~~~~~(~~~~ 661 ~~~~~~)~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 721 ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 781 ~~~~~)~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~-~) 841 ~~~~~~~~~~ ~~~~~|~~~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~GUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGGG|GA UACAAGCGUU AU-CCGGAAU UACUGGGC|G 961 UAAAGCGUAU GUAGGUG|GU UUUAAUAU-| -au-uuuuau auaaagaaaa cu(------- 1021 ---------- ---------- ---------- ---------- ---------- ------auau 1081 auuugu)uuu uuauuaa-aa aauua--uua -aac-u-a-- ---------g ag-uc|uguu 1141 a-----gggg uaaaA|GGAA UUUUUUG-AG GAGUA(GUGA AA)UGCGAAG AUA---CAAA 1201 AAAGAAGACC AAA---AGC( GAAG)GC|A| UUUUA-CUG| GGGCA--G-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACACU 1321 |GAG-AUACG AAAGUUAAGG UAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-UU 1381 A-ACUGUAAA CGAUGGAU-- --AC|UC|GG AA-UUAAAUA U--------- --------(- 1441 --------aa cua--)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|AUAUUUAG UUCC-uUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGAG UAGUACGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCUC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGUAACG)CG 1681 AAGAACCUUA CCAGAgcuug aga----ua| -ua-uau--g ----uuuuaa aaau--uua( 1741 aua-a-)auu uu-uau---- ---------- ----(----- -----)---- ------aaa- 1801 ---------- -----|uaca aaUA|C|AGG AGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG UAGCCCUUA| uuuaa----a 1921 guu----aa- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( auaucuuuaa )------aaa 2101 |cugccuaua u---uuuuau auaa(aaaau a---)----- ---------- ---------a 2161 gg--AGGAAG GAAUGGAAAA CGUC-AA--G UCCUCAUGCC CUUUAUGCUC UGGGCUAU-A 2221 CACGUGCUAC AAUGGA--UG GUACAAUaaa uu----uuaa aaga------ -----aaaaa 2281 uuuu(uuucu uuuu)ucugu uugaaaaaa- ----uagaua caaauaua-u ua--aaaacc 2341 auucUUAGUU CGGAACAUAA AU(--UGCAA UUU)AUUUAU GUGAAGCUGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCUU)AC GGCGGUGAAU AA--GUC--- ---------- 2461 -------AUC GAGCCUUGUA CACACCGCCC GUCACACCAU GGGAAuuaa- uuauuauuga 2521 aacuucu--- -g-------- -(-----cuu -------)-- -------aa- ga-aaau-aa 2581 au-aagaauu aguaaCUGGG GUGAAGUCGU AACAAGGUAA CCGUA~~(~~ ~~)~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS pl.E.tenel 2717 bp RNA RNA 12-DEC-1998 DEFINITION Chloroplast Eimeria tenella.; . ACCESSION AF0409 1 KEYWORDS . SOURCE Chloroplast Eimeria tenella. ORGANISM Chloroplast Eimeria tenella. REFERENCE 1 (bases 1 to 1012) AUTHORS Lang-Unnasch,N., Reith,M.E., Munholland,J. and Barta,J.R. TITLE Plastids are widespread and ancient in parasites of the phylum Apicomplexa JOURNAL Int. J. Parasitol. 28 (11), 1743-1754 (1998) STANDARD No information REFERENCE 2 (bases 1 to 1012) AUTHORS Lang-Unnasch,N., Reith,M.E. and Munholland,J. TITLE Direct Submission JOURNAL Submitted (05-JAN-1998) Geographic Medicine, University of Alabama at Birmingham, 845 South 19th St., Birmingham, AL 35294-2170, USA STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: AF040971 BASE COUNT 350 a 149 c 207 g 306 t 1705 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~|~~~ ~~~~~~~~~~ ~~~-~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~-~~~~~~ ~(~~------ 121 ---------- --~~~~~~~~ )~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ 361 ~~~~~~~~~~ ~~-~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- --------~~ 421 ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~--- ---~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~-~~- -~~---(~~~ ~~~~~~-~~~ ~------)~~ ~---~~-|-~ ~~~~~~~~~~ 541 ~~~~~~~~|~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~-~~ -~~(~~~~~~ ~~)-~~~~~~ 601 ~~|~~~~~~~ ~~|~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~|~~~~~ ~~~~~(~~~~ 661 ~~~~~~)~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 721 ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 781 ~~~~~)~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~-~) 841 ~~~~~~~~~~ ~~~~~|~~~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~GUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGGG|GA UACAAGCGUU AU-CCGGAAU UACUGGGC|G 961 UAAAGCGUAU GUAGGUG|Gu uuuaauau-| auuuuuauau aaaaaaaacu ug(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---aua)uuu guuu-uu-ag uaaaa--aaa -uua-u-uaa -ac-u---ag ag-uc|uguu 1141 a-----gggg uaaaA|GGAA UUUUUUG-AG GAGUA(GUGA AA)UGCAAAG AUA---CAAA 1201 AAAGAAGACC AAA---AGC( GAAA)GC|A| UUUUA-CUA| GGACA--G-- ---------- 1261 ---------- ----uuuauu u--------- ---------- ---------- UACUGACACU 1321 |GAG-AUACG AAAGUUAAGG UAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-UU 1381 A-ACUGUAAA CGAUGGAU-- --AC|UC|GG AA-UAAUAUA ---------- --------(- 1441 -------uaa auaa-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-UAUUUUA UUCC-uUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGAG UAGUACGCUC (GCAA)GAGU GAAACUUAAA GGAAUUGACG 1621 GGGGCUC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGUAACG)CG 1681 AAGAACCUUA CCAGAgcuug aaa----ua| -ua-ggu--u ------uuua aaaauuuaa( 1741 uaa-a-)uuu uu-auu---- ---------- ----(----- -----)---- ------aaua 1801 uaa------- -----|ccaU C-UA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG UAUCCCUUA| uuuaa----a 1921 guu----aa- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( auaucuuuaa )------aaa 2101 |cugccuaua u---uuuuua uaua(aaaua ----)----- ---------- ---------a 2161 gg--AGGAAG GAAUGGAAAA CGUC-AA--G UCCUCAUGCC CUUUAUGCUC UGGGCUAU-A 2221 CACGUGCUAC AAUGGA--UG AUACAAUaaa uu----uaa- ---------- --uauaaaga 2281 aaaa(uuuuu cuuu)uuuuu auuugaaaaa a---uaaaua uaaauauacu ua---aaUUC 2341 AUUCUUAGUU CGGAACAUAA AU(--UGCAA UUU)AUUUAU GUGAAGCUGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCUU)AC GGCGGUGAAU AA--GUC--- ---------- 2461 -------AUC GAGCCUUGUA CACACCGCCC GUCACACCAU GGAAAuuaa- uuauuauuaa 2521 aacuucu--- -g-------- -(-----uuu -------)-- -------aa- ga-aaau-aa 2581 au-aagaauu aguaaCUGGG GUGAAGUCGU AACAAGGUAA CCGUA~~(~~ ~~)~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS pl.N.canin 2717 bp RNA RNA 12-DEC-1998 DEFINITION Chloroplast Neospora caninum.; . ACCESSION AF0409 3 KEYWORDS . SOURCE Chloroplast Neospora caninum. ORGANISM Chloroplast Neospora caninum. REFERENCE 1 (bases 1 to 1021) AUTHORS Lang-Unnasch,N., Reith,M.E., Munholland,J. and Barta,J.R. TITLE Plastids are widespread and ancient in parasites of the phylum Apicomplexa JOURNAL Int. J. Parasitol. 28 (11), 1743-1754 (1998) STANDARD No information REFERENCE 2 (bases 1 to 1021) AUTHORS Lang-Unnasch,N., Reith,M.E. and Munholland,J. TITLE Direct Submission JOURNAL Submitted (05-JAN-1998) Geographic Medicine, University of Alabama at Birmingham, 845 South 19th St., Birmingham, AL 35294-2170, USA STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: AF040973 BASE COUNT 359 a 152 c 212 g 298 t 1696 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~|~~~ ~~~~~~~~~~ ~~~-~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~-~~~~~~ ~(~~------ 121 ---------- --~~~~~~~~ )~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ 361 ~~~~~~~~~~ ~~-~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- --------~~ 421 ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~--- ---~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~-~~- -~~---(~~~ ~~~~~~-~~~ ~------)~~ ~---~~-|-~ ~~~~~~~~~~ 541 ~~~~~~~~|~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~-~~ -~~(~~~~~~ ~~)-~~~~~~ 601 ~~|~~~~~~~ ~~|~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~|~~~~~ ~~~~~(~~~~ 661 ~~~~~~)~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 721 ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 781 ~~~~~)~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~-~) 841 ~~~~~~~~~~ ~~~~~|~~~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~GUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGGG|GA UACAAGCGUU UU-CCAAAAU UACUGGGC|G 961 UAAAGUGUAU GUAGGUG|Ga uuaauaug-| uuc-uuacuu aaagacuauu ug(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---aua)aau uuag-ga-aa agaaa--gaa -aac-u-auu -aa-u-cuug ag-uu|cgau 1141 a-----aggg uaagA|GGAA UUUUUUG-AG GAGUA(GUGA AA)UGCGAAG AUA---CAAA 1201 AAAGAAGAUC AAC---AGC( GAAA)GC|A| UCUUA-CUA| GGUCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACACU 1321 |GAG-AUACG AAAGUUAAGG UAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-UU 1381 A-ACUGUAAA CAAUGGGU-- --AC-UC|GG UA-CUGGA-- ---------- --------(a 1441 auauaaauac auaaa)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|---UUCAG UACC-cUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGAG UAGUACGCUC (GCAA)GGGU GAAACUCAAA GGAAUUGACG 1621 GGGGCUC-GU ACA------- AGCGGU|GGA GCAUGUAAUU UAAUUCG-(A UGUAACG)CG 1681 AUAAACCUUA CCAGAacuag ac-----ua| -aa-uuu--a -uuuuaaauu auua-----( 1741 aua-u-)uaa uu-aa----- ---------- ----(----- -----)---- ------AAA- 1801 ---------- -----|aaaa u-ua|c|aGG AGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCUACGAGCG CUACCCUUA| uuuaa----a 1921 guuu---uuu ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( auaucuuuaa )------aaa 2101 |cggacuaua uaaauuuuua gauu(aaauu ----)----- ---------- ---------a 2161 gu--AGGAAG GAGAGGAAAA CGUC-AA--G UCUUUAUGCC CUUUAUGUUC UGGGCUAC-A 2221 UACGUGCUAC AAUAGA--UG GUACAAUaau uu----uuaa aaauaaauau aaauauauua 2281 ucaa(u-uua uuu-)uuaau uuauuuguga a---aauaga uguaauaa-u ua--aaaACC 2341 AUCUCUAGUU CGGAACAUAA AC(--UGCAA UUU)GUUUAU GUAAAGUUGG AAUCGCU--- 2401 ---AGUAAU- CGCCGA(UC- -AGCAUC)AC GGCGGUGAAU AA--GUC--- ---------- 2461 -------UUC GAGCCUUGUA CACACCGCCC GUCACGCCAC GGAAAuuga- uuauuuuuua 2521 aaacuuu--- -u-------- -(-----ggu -------)-- -------aa- aa-ggau-aa 2581 au-aauaaua aauaaCUGGG GUGAAGUCGU AACAAGGUAA CCGUA~~(~~ ~~)~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS pl.T.gon.1 2717 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U18086 BASE COUNT 523 a 216 c 316 g 445 t 1217 others ORIGIN 1 |--------- AAAUUAUUAC GAG-UU(U-G A)UCCU|GGC UCCGGAAGAA CGC-AAGAGA 61 UGUGCUU--A ACACAUGCUA AUUGAAUG|g u--------- ---------a u(ua------ 121 ---------- --au------ )au------- ---------- ------au-- CAU--AGUGU 181 AAUAGUGAGU AA-UGUAUGA GA-AUUUAU- UUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GAA------- ----UAUAAU AAAA------ ---------- --------AU U(UAAU)AAU 361 -UU-AUAAUA AA-CGC---- ---------- ---------- ---------- --------AA 421 U-------(A GU----)--- ----GUU--- ---uuaaaa- ---------- ---------- 481 -----G---- -AU---(--- -------AAU U------)-- ----AU-|-U -----GUCUA 541 AAAA-AAA|G -CUCAUAU|- CUAAUUA-GC UAGUUGG-UG -AA(G-UAAU AG)UUUUACC 601 AA|GGCGAAG AU|UAGUAGC UG|CCUU(GA GA)GGGGAAA CAGC|CACAU AGAGA(UUGA 661 AAUACA)GCU CUAA-C--UC C(UA-AG)GG -G--GGCAG- CAGUGGGG-A AUUUUCUGcC 721 AAU-AAGC-( -GCAA)-GCU U-GACAGA|G CGUCAUCACA UGAAGGAGGA AGGCC(u--A 781 UAA-a)GG-U U--GUAAACU UC|UUUU-Gc uuaaaaaaa- ---------- (-uaaua-c) 841 ---------- ugacg|-u-U uaa-guuuAA -AAAGUAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---CA-) UACGGGG|GA UACAAGCGUU UU-CCAAAAU UACUGGGC|G 961 UAAAGUGUAU GUAGGUG|GA UUGGUAUG-| UUC-UUCCUU AAAUACUAUU UG(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---AUA)AAU UUAG-AA-AA AGGAA--GAA -AAC-U|AUU -AA-U-CUUG AG-UU|CGAU 1141 A-----AGGG UAAGA|GGAA UUUUUUG-AG GAGUA(GUGA AA)UGCGAAG AUA---CAAA 1201 AAAGAAGAUC AAC---AGC( GAAA)GC|A| UCUUA-CUG| GGUCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACACU 1321 |GAG-AUACG AAAGUUAAGG UAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-UU 1381 A-ACUGUAAA CAAUGGAU-- --AC|UC|GG UA-CUGGA-- ---------- --------(- 1441 -gacauuaaa uauau)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|aaaUUCAG UACC-CUAGC (UAAC)GCGU 1561 -UAAGUAUUC |C|GCCUGAG UAGUACGCUC (GCAA)GGGU GAAACUCAAA GGAAUUGACG 1621 GGGGCUC-GU ACA------- AGCGGU|GGA GCACGUAAUU UAAUUCG-(A UGUAACG)CG 1681 AUAAACCUUA CCAGAACUAG AC-----UA| -AA-UUU--A -UUUUAAAUU AUUA-----( 1741 AUA-U-)UAA UU-AAU---- ---------- ----(----- -----)---- ------AAA- 1801 ---------- -----|AAAU U-UA|C|AGG AGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCUACGAGCG CUACCCUUA| uuuaa----a 1921 guuu---uuu ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( auaucuuuaa )------aaa 2101 |cagacuaua uaaauuuuug uacu(aaauu ----)----- ---------- ---------a 2161 gu--AGGAAG GAGAGGAAAA CGUC-AA--G UCUUUAUGCC CUUUAUGUUC UGGGCUAC-A 2221 UACGUGCUAC AAUAGA--UG GUACAAUaau uu----uuaa aaau------ aaauacaaua 2281 ucaa(uuuau uu--)uuaau uuauuuguga a---aauaaa uguaauaa-u ug--aaaACC 2341 AUUUUUAGUU CGGAACAUAA AC(--UGCAA UUU)GUUUAU GUAAAGUUGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCAUU)AC GGCGGUGAAU AA--GUC--- ---------- 2461 -------UUC GAGCCUUGUA CACACCGCCC GUCACGCCAC GGAAAuuga- uuauuuuuua 2521 aaacuuu--- -u-------- -(-----gau -------)-- -------aa- aa-ggau-aa 2581 au-aauaaua aauaaCUGGG GUGAAGUCGU AACAAGGUAG CUGUACU(GG AA)GGUGCUG 2641 CUGGAU-AA- ---UUU--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS pl.T.gon.2 2717 bp RNA RNA 31-JUL-1998 DEFINITION Toxoplasma gondii.; 16S ribosomal RNA; 16S rRNA; 23S ribosomal RNA; 23S rRNA; ORF470; plastid DNA; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Leu; transfer RNA-Met; transfer RNA-Thr; transfer RNA-Val; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Leu; tRNA-Met; tRNA-Thr; tRNA-Val. ACCESSION Y11430 KEYWORDS 16S ribosomal RNA; 16S rRNA; 23S ribosomal RNA; 23S rRNA; ORF470; plastid DNA; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Leu; transfer RNA-Met; transfer RNA-Thr; transfer RNA-Val; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Leu; tRNA-Met; tRNA-Thr; tRNA-Val. SOURCE Toxoplasma gondii. ORGANISM Toxoplasma gondii. REFERENCE 1 (bases 1 to 6113) AUTHORS Denny,P., Preiser,P., Williamson,D. and Wilson,I. TITLE apicomplexans Evidence for a single origin of the 35 kb plastid DNA in JOURNAL Protist 149, 51-59 (1998) STANDARD No information REFERENCE 2 (bases 1 to 6113) AUTHORS Denny,P.W. TITLE Direct Submission JOURNAL Submitted (24-FEB-1997) P.W. Denny, National Institute for Medical Research, Mill Hill, London, NW7 1AA, UK STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: Y11430 BASE COUNT 511 a 206 c 297 g 431 t 1272 others ORIGIN 1 |--------- AAAUUAUUAC GAG-UU(U-G A)UCCU|GGC UCCGGAAGAA CGC-AAGAGA 61 UGUGCUU--A ACACAUGCUA AUUGAAUG|g u--------- ---------a u(ua------ 121 ---------- --au------ )au------- ---------- ------au-- CAU--AGUGU 181 AAUAGUGAGU AA-UGUAUGA GA-AUUUAU- UUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GAA------- ----UAUAAU AAAA------ ---------- --------AU U(UAAU)AAU 361 -UU-AUAAUA AA-CGC---- ---------- ---------- ---------- --------AA 421 U-------(A GU----)--- ----GUU--- ---uuaaaa- ---------- ---------- 481 -----G---- -AU---(--- -------AAU U------)-- ----AU-|-U -----GUCUA 541 AAAA-AAA|G -CUCAUAU|- CUAAUUA-GC UAGUUGG-UG -AA(G-UAAU AG)UUUUACC 601 AA|GGCGAAG AU|UAGUAGC UG|CCUU(GA GA)GGGGAAA CAGC|CACAU AGAGA(UUGA 661 AAUACA)GCU CUAA-C--UC C(UA-AG)GG -G--GGCAG- CAGUGGGG-A AUUUUCUG-C 721 AAU-AAGC-( -GCAA)-GCU U-GACAGA|G CGUCAUCACA UGAAGGAGGA AGGCC(U--A 781 UAA-A)GG-U U--GUAAACU UC|UUUU-GC UUAAaaaaa- ---------- (-uaaua-c) 841 ---------- ugacg|-u-U UAA-GUUUAA -AAAGUAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGGG|GA UACAAGCGUU UU-CCAAAAU UACUGGGC|G 961 UAAAGUGUAU GUAGGUG|GA UUGGUAUG-| UUC-UUCCUU AAAUACUAUU UG(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---AUA)AAU UUAG-AA-AA AGGAA--GAA -AAC-U|AUU -AA-U-CUUG AG-UU|CGAU 1141 A-----AGGG UAAGA|GGAA UUUUUUG-AG GAGUA(GUGA AA)UGCGAAG AUA---CAAA 1201 AAAGAAGAUC AAC---AGC( GAAA)GC|A| UCUUA-CUG| GGUCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACACU 1321 |GAG-AUACG AAAGUUAAGG UAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-UU 1381 A-ACUGUAAA CAAUGGAU-- --AC|UC|GG UA-CUGGA-- ---------- --------(- 1441 -gacauuaaa uauau)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|aaaUUCAG UACC-CUAGC (UAAC)GCGU 1561 -UAAGUAUUC |C|GCCUGAG UAGUACGCUC (GCAA)GGGU GAAACUCAAA GGAAUUGACG 1621 GGGGCUC-GU ACA------- AGCGGU|GGA GCAUGUAAUU UAAUUCG-(A UGUAACG)CG 1681 AUAAACCUUA CCAGAACUAG AC-----UA| -AA-UUU--A -UUUUAAAUU AUUA-----( 1741 AUA-U-)UAA UU-AAU---- ---------- ----(----- -----)---- ------AAA- 1801 ---------- -----|AAAU U-UA|C|AGG AGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCUACGAGCG CUACCCUUA| uuuaa----a 1921 guuu---uuu ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( auaucuuuaa )------aaa 2101 |cagacuaua uaaauuuuug uacu(aaauu ----)----- ---------- ---------a 2161 gu--AGGAAG GAGAGGAAAA CGUC-AA--G UCUUUAUGCC CUUUAUGUUC UGGGCUAC-A 2221 UACGUGCUAC AAUAGA--UG GUACAAUaau uu----uuaa aaau------ aaauacaaua 2281 ucaa(u-uua uuu-)uuaau uuauuuguga a---aauaaa uguaauaa-u ug--aaaACC 2341 AUUUUUAGUU CGGAACAUAA AC(--UGCAA UUU)GUUUAU GUAAAGUUGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCAUU)AC GGCGGUGAAU AA--GUC--- ---------- 2461 -------UUC GAGCCUUGUA CACACCGCCC GUCACGCCAC GGAAAuuga- uuauuuuuua 2521 aaacuuu--- -u-------- -(-----gau -------)-- -------aa- aa-ggau-aa 2581 au-aauaaua aauaa~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS pl.H.cates 2717 bp RNA RNA 12-DEC-1998 DEFINITION Chloroplast Hepatozoon catesbianae.; . ACCESSION AF0409 2 KEYWORDS . SOURCE Chloroplast Hepatozoon catesbianae. ORGANISM Chloroplast Hepatozoon catesbianae. REFERENCE 1 (bases 1 to 939) AUTHORS Lang-Unnasch,N., Reith,M.E., Munholland,J. and Barta,J.R. TITLE Plastids are widespread and ancient in parasites of the phylum Apicomplexa JOURNAL Int. J. Parasitol. 28 (11), 1743-1754 (1998) STANDARD No information REFERENCE 2 (bases 1 to 939) AUTHORS Lang-Unnasch,N., Reith,M.E. and Munholland,J. TITLE Direct Submission JOURNAL Submitted (05-JAN-1998) Geographic Medicine, University of Alabama at Birmingham, 845 South 19th St., Birmingham, AL 35294-2170, USA STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: AF040972 BASE COUNT 334 a 123 c 184 g 298 t 1778 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~|~~~ ~~~~~~~~~~ ~~~-~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~-~~~~~~ ~(~~------ 121 ---------- --~~~~~~~~ )~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ 361 ~~~~~~~~~~ ~~-~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- --------~~ 421 ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~--- ---~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~-~~- -~~---(~~~ ~~~~~~-~~~ ~------)~~ ~---~~-|-~ ~~~~~~~~~~ 541 ~~~~~~~~|~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~-~~ -~~(~~~~~~ ~~)-~~~~~~ 601 ~~|~~~~~~~ ~~|~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~|~~~~~ ~~~~~(~~~~ 661 ~~~~~~)~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 721 ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 781 ~~~~~)~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~-~) 841 ~~~~~~~~~~ ~~~~~|~~~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~GUG(CCA- 901 -GCAGCA|GC GGU---AA-) UACGAGA|GA UGCAAGCGUU AU-UCGGAAU UAUUGGGC|G 961 UAAAGUGUGU GUAGGUG|Gu uuguugua-| cuu-uaaacu aaaaaauuaa au(------- 1021 ---------- ---------- ---------- -uuuaauaau uauaauuaaa uaauuaucaa 1081 acuaag)aga uugu-ua-aa aauaa--aac -gaa-c-uuu -uu-g-ggga gu-gg|uuua 1141 a-----uacg uugau-CCAA UAAGGAA-GA UUAAA(GUGA AA)ACUUUUU AUU---AGAG 1201 CAU------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- uuCUGACACU 1321 |GAG-ACACG AAAGCUAAGG UAGCAAAUGA G(AUU-A-GA GAC)-CUCAG UCAg|UC-UU 1381 A-GCUGUAAA UUAUGAAA-- --AC-UU|AA AA-AUAAU-- ---------- --------(- 1441 ----uuuauu auaaa)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|---AUUAU UUUU-uaugc -uaac-gcuu 1561 -caaguuuUC |C|GCCUGGG UAGUACAUUU (GAAA)AAAU GAAACUUAAA GGAAUUGACG 1621 GGGAUCC-UU ACA------- AGCGGU|GGG GCAUGUGGUU UAAUUCG-(A UGCAACA)CG 1681 AAAAACCUUA CCAAAAUUAG AC-----UA| ---------- ---------- ---------( 1741 ------)--- ---------- ---------- ----(----- -----)---- ---------- 1801 ---------- -----|---- --ua|c|aGG UGGUGCAUG| GCU|GUCGUC A|-G-UUUGU 1861 |GCC(GUGA) GGCGUUGGA( UUUAGU)UCC AUAACAAACG CUACCCUUU| uauaa----- 1921 -ua----uuu ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( auauauuua- )------uua 2101 |uauacu-gc uaaauuauau uaau(aauuu ----)----- ---------- ---------a 2161 g---AGGAAG GAGAGGAAGA CGUC-AA--G UCAUCAUGCU CUUUAUAUUU UGGGCCGC-C 2221 CACAUGCCAC AAAGAG--AA AUAUaAUaaa au----agua auau---agu uuuuauugua 2281 aaau(-aaaa guu-)auuuu aaaaauuuuu ccuaguacgg aaguuaga-u ug--aaa--- 2341 ---------- ---uuucuaa --(------- ---)------ GUAAAGCAGG AAUCGCU--- 2401 ---AGUAAU- CGUUGG(UC- -AGCUAU)AC AACGGUGAAU UA--UUG--- ---------- 2461 -------CAA GGAUCUUGUA CACACCGCCC GUCACAUCAG GGAAAuuua- ggguuauaaa 2521 aauaauu--- -u-------- -(-----aua -------)-- -------uu- au-uauu-au 2581 au-aguacua aguaaCUAGG GUGAAGUCGU AACAAGGUAA CCGUA~~(~~ ~~)~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS pl.P.falci 2717 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X57167 X95275 DEFINITION P.falciparum organellar gene for small subunit ribosomal RNA SOURCE Plasmodium falciparum DNA. ORGANISM Plasmodium falciparum Eukaryota; Animalia; Protozoa; Microspora; Microsporea; Microsporida; Haemosporina; Plasmodiidae. REFERENCE 1 (bases 1 to 1498) AUTHORS Gardner,M.J., Feagin,J.E., Moore,D.J., Spencer,D.F., Gray,M.W., Williamson,D.H. and Wilson,R.J. TITLE Organization and expression of small subunit ribosomal RNA genes encoded by a 35-kb circular DNA in Plasmodium falciparum JOURNAL Mol. Biochem. Parasitol. 48, 77-88 (1991) COMMENT *source: strain=C10; *source: stage=erythrocytic; *source: clone= pf5, pf6b, pfS2, lambda E42; See M23443 for overlapping sequence From EMBL entry PFORGA; dated 23-AUG-1991. FEATURES Location/Qualifiers rRNA 54..1480 /product="SSU ribosomal RNA" BASE COUNT 586 a 138 c 198 g 504 t 1291 others ORIGIN 1 |--------- -uuauauugc GAG-UU(U-G A)UCCU|AGC UCAGAAUUAA CGC-UAGAAA 61 UAUACAU--U ACACAUGCAA AUUA-AUG|A ---------- ---------- U(-A------ 121 ---------- --AU------ )A-------- ---------- -------U-- CAU--AGUGU 181 AUAGGUGAG- GA-UAUAUAA AU-UUUUAAU UUUA------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 AAU------- --AGAUUAU- -AAA------ ---------- --------UU U(UAUU)AAA 361 -UA----AUA AU-CUAU-Aa ---------- ---------- ------gc-- --------gc 421 a-------(a aaaua-)--- ----uau--- ---guac--- ---------- ---------- 481 uAUAUU---- -AA---(--- --------AA A------)-- ----UU-|-A AUAUUAUUUA 541 AAAU-AAA|A -UUUAUAU|- UUGAUUA-AC UAGUUGG-UA -AU(U-UAAA AG)-ACUACC 601 AA|GGUUAUU AU|CAAAAAU UG|GUUU(GA AA)GAAUGUA CAAU|CACAU UAGGA(UUGA 661 AAUAAA)GCC UAAA-U--UU U(UAUAA)AA -A--AUCAG- CAGUGAGG-A AUAUUUUA-C 721 AAU-AAGU-( -GUAA)-GCU U-GAUAAA|G UAAUAUUUCU UUUAGGAAGA CAGUA(UUAU 781 UAAAA)UA-U U--GUAAACU UU|UUAU-UU UAUUuuuaAA uAu------- (--------) 841 ---------- ugau-|aa-- aAA-UAAAAA -AUAGUAUU| UGCU-AUUU- CUGUG(CCA- 901 -GCAGCA|GC GGU---AA-) UACAGAA|AA UGCAAGCGUU AU-UCAUUUU AUU-AGGC|G 961 UAAAGCGUUU UAAGGUU|UU AUAUUAAU-| UUU-AUGUUU AAAUAUUUAA AU(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 --UAAA)UUU AAAA-UA-AA UUAAU--AAA -UAA-U|AAU -AU-A-AUAG AG-UA|UUAU 1141 A-----AAAG UAUUA|AGAA UUUUUUG-AG AAGUA(GUGA AA)UACAAUG AUA---CAAA 1201 AAAGAAUAUC AAA---GGC( GGAA)GC|A| UAAUA-CUA| UAUAA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACACU 1321 |UAA-AAACG AAAGCUAAGG UAGCAAAUAG G(AUU-A-GA UAC)-CCUAG UAG-|UC-UU 1381 A-GCUGUAAA CUAUGAAU-- --AU|UU|UA UA-UUUAU-- ---------- --------(- 1441 ------AUUU U----)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|---AUAAA UAUA-AUAAC (UAAC)GUGA 1561 -UAAAUAUUC |C|GCCUGAG UAGUAUAUUC (GCAA)GAAU GAAAUUCAAA GGAAUUGACG 1621 GGAGCUU-AU ACA------- AGUGGU|GGA ACAUGUGGCU UAAUUCG-(A UGCAACA)CG 1681 AUAAACCUUA CCAAAAUUUA ACA----AU| -AU-UUU--U A------AUA UUAA-----( 1741 GAA-A-)UUA AU-AU----- ---------- ---u(uuaau -----)a--- ---------- 1801 ---------- -----|AAAU A-UA|U|AGG UAGUGCAUG| GCU|GUCGUC A|-G-UUCGU 1861 |GCU(GUGA) AGUGUUAAU( UUUAGU)AUU AUAACGAACG UAACCUUUU| ---------- 1921 ---------- ----auaaaa ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( ---------- )--------- 2101 |--------- ----aaaauu uuua(uaa-- ----)----- ---------- ---------- 2161 uaaa-uaaua AUAAAGAUUA CGUC-AA--G UCAUUAUGCU CCUUAUAUUU UGGGCUGC-U 2221 CACGUGUUAC AUAAAA--UA UUACAAUAUU UU-------- -AUU------ ---------- 2281 ----(-auau guua)----- ---------- ----AAU--- --AUAAUA-A UUA-AAAUAU 2341 AUUUAUAGUU CAGAUUAUAA AU(--UGAAA CUC)AUUUAU AUAAAGAUGG AAUCACU--- 2401 ---AGUAAU- CGCUAA(UC- -AGAAUU)AU AGCGGUGAAU AA--GUU--- ---------- 2461 -------CUU AAGCUUUGUA CACACCGCCC GUCACAUCUA AAAAGUAUc- auauuauaua 2521 aaaauuauug u--------- -(-----uaa -------)-- ---------- -a-uaauaau 2581 au-auaauuA UAUAAUUUAG AUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUAAUA AAAUAA--|a uu~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS pl.P.vivax 2717 bp RNA RNA 12-DEC-1998 DEFINITION Chloroplast Plasmodium vivax.; . ACCESSION AF0409 4 KEYWORDS . SOURCE Chloroplast Plasmodium vivax. ORGANISM Chloroplast Plasmodium vivax. REFERENCE 1 (bases 1 to 949) AUTHORS Lang-Unnasch,N., Reith,M.E., Munholland,J. and Barta,J.R. TITLE Plastids are widespread and ancient in parasites of the phylum Apicomplexa JOURNAL Int. J. Parasitol. 28 (11), 1743-1754 (1998) STANDARD No information REFERENCE 2 (bases 1 to 949) AUTHORS Lang-Unnasch,N., Reith,M.E. and Munholland,J. TITLE Direct Submission JOURNAL Submitted (05-JAN-1998) Geographic Medicine, University of Alabama at Birmingham, 845 South 19th St., Birmingham, AL 35294-2170, USA STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: AF040974 BASE COUNT 396 a 103 c 130 g 320 t 1768 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~|~~~ ~~~~~~~~~~ ~~~-~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~-~~~~~~ ~(~~------ 121 ---------- --~~~~~~~~ )~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ 361 ~~~~~~~~~~ ~~-~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- --------~~ 421 ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~--- ---~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~-~~- -~~---(~~~ ~~~~~~-~~~ ~------)~~ ~---~~-|-~ ~~~~~~~~~~ 541 ~~~~~~~~|~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~-~~ -~~(~~~~~~ ~~)-~~~~~~ 601 ~~|~~~~~~~ ~~|~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~|~~~~~ ~~~~~(~~~~ 661 ~~~~~~)~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 721 ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 781 ~~~~~)~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~-~) 841 ~~~~~~~~~~ ~~~~~|~~~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~GUG(CCA- 901 -GCAGCA|GC GGU---AA-) UACAGAA|AA UGCAAGCGUU AU-UCCCUUU AUU-AGGC|G 961 UAAAGCGUUU UAAGGUU|UU AUAUUAAU-| UUU-AUUUUA AAAUAUUUAA UU(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 --AAAA)UUU AAAA-AA-AA --AAU--AAA -UAA-U|AAU -AU-A-AUAG AG-UA|UUAU 1141 U-----AAAG UAUUA|AGAA UUUUUUG-AG AAGUA(GUGA AA)UACAAUG AUA---CAAA 1201 AAGGAAUACC AAA---AGC( GAAA)GC|A| UAAUA-CUA| AAUAA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACACU 1321 |UAA-AAACG AAAGCUAAGG UAGCAAAUAG G(AUU-A-GA UAC)-CCUAG UAG-|UC-UU 1381 A-GCUGUAAA CUAUGAAU-- --AU|UU|UA UA-UUUAU-- ---------- --------(- 1441 ------AUU- auau-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|---AUAAA UAUA-AUAAC (uaac)guaa 1561 -aAAAUAUUC |C|GCCUGAG UAGUAUAUUC (GCAA)GAAU UAAAUUCAAA GGAAUUGACG 1621 GGAGCUU-AU ACA------- AGUGGU|GGA ACAUGUGGCU UAAUUCG-(A UGCAACA)CG 1681 AUAAACCUUA CCAAAAUUUA ACA----AU| -AU-UUU--U A------AUA UUAA-----( 1741 GAA-A-)UUA AU-AG----- ---------- ---u(uuaau -----)a--- ---------- 1801 ---------- -----|AAAU A-UA|U|AGG UAGUGCAUG| GCU|GUCGUC A|-G-UUCGU 1861 |GCU(GUGA) AGUAUUAAU( UUCAGU)AUU AUAACGAACG UAACCUUUU| auagaa---- 1921 ---------- ----aaauaa uuuu------ ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( ---------- )--------- 2101 |-------ua uaauauauua uuaa(uaa-- ----)----- ---------- ---------- 2161 uaaauauaua AAAAAGAUUA CGUC-AA--G UCAUUAUGCU CCUUAUAUUU UGGGCCGC-U 2221 CACGUGUUAC AUAAAA--UA UUACAAUAUA uu-------- -UAU------ ---------- 2281 --ua(----u aua-)--ua- ---------- ----AAU--- --AUAA-U-A UUUAAAAUAU 2341 AUUUAUAGUU CAGAUUAUAA AU(--UGAAA CUC)AUUUAU AUGAAGAUGG AAUCACU--- 2401 ---AGUAAU- CGCUAA(UU- -AGAAUU)AU AGCGGUGAAU AA--GUU--- ---------- 2461 -------CUU AAGCUUUGUA CACACCGCCC GUCACAUCUG AAAAAUAUu- auauuauaua 2521 aaaauuauug u--------- -(-----uaa -------)-- ---------- -a-uaauaau 2581 au-auaaaaA UAUAAUUUAG AUGAAGUCGU AACAAGGUAA CCGUA~~(~~ ~~)~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS pl.Bab.big 2717 bp RNA RNA 12-DEC-1998 DEFINITION Chloroplast Babesia bigemina.; . ACCESSION AF0409 8 KEYWORDS . SOURCE Chloroplast Babesia bigemina. ORGANISM Chloroplast Babesia bigemina. REFERENCE 1 (bases 1 to 961) AUTHORS Lang-Unnasch,N., Reith,M.E., Munholland,J. and Barta,J.R. TITLE phylum Apicomplexa Plastids are widespread and ancient in parasites of the JOURNAL Int. J. Parasitol. 28 (11), 1743-1754 (1998) STANDARD No information REFERENCE 2 (bases 1 to 961) AUTHORS Lang-Unnasch,N., Reith,M.E. and Munholland,J. TITLE Direct Submission JOURNAL Submitted (05-JAN-1998) Geographic Medicine, University of Alabama at Birmingham, 845 South 19th St., Birmingham, AL 35294-2170, USA STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: AF040968 BASE COUNT 364 a 110 c 154 g 333 t 1756 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~|~~~ ~~~~~~~~~~ ~~~-~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~-~~~~~~ ~(~~------ 121 ---------- --~~~~~~~~ )~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ 361 ~~~~~~~~~~ ~~-~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- --------~~ 421 ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~--- ---~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~-~~- -~~---(~~~ ~~~~~~-~~~ ~------)~~ ~---~~-|-~ ~~~~~~~~~~ 541 ~~~~~~~~|~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~-~~ -~~(~~~~~~ ~~)-~~~~~~ 601 ~~|~~~~~~~ ~~|~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~|~~~~~ ~~~~~(~~~~ 661 ~~~~~~)~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 721 ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 781 ~~~~~)~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~-~) 841 ~~~~~~~~~~ ~~~~~|~~~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~GUG(CCA- 901 -GCAGCA|GC GGU---AA-) UACAGAG|GA UAUAAGCGUU AU-UCAUAAU UAUUGGGC|A 961 UAAAGCAUCC UUAGAUG|GU UUAUUGUA-| UUA-AAGUAG AAAU-UUAAA AA(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 -uaaua)UUU UUAA-ac-au uauau-uuAA -uAU-U|AAU -Agaacuuug ag-aa|uaaa 1141 a-----cAAG UUUAA|GGAA UUUUUUG-AG UAAUG(GUGA AA)UAUUAUU UCUAUACAUU 1201 AAAGAAGGCC AUG---AAC( GAAA)GU|G| UUAAA-CUA| AUAUA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- GUCUGACAUU 1321 |GAU-GGAUG AAAGCUAAAG GAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UU-UU 1381 A-GCUGUAAA UGAUGAAU-- --AU|U-|AA AA-UUUAG-- ---------- ---aaaaa(- 1441 --------uu auu--)uuuu u--------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|---UUAGA UUUA-A-aGU (UAAU)GCGU 1561 -AAAAUAUUC |C|GCCUGAA UAGUAUGCUC (GCAA)GAGU CAAAUUCAAA GGAACUGACG 1621 GGAACUU-AU ACA------- AGUGAU|GAG CUAUGUUAUU UAAUUUG-(A UGCAGCC)CA 1681 AAAAAUCUUA CCAAUAUUUG ACA----UA| -AU-Uaa--a u------auu uuuc-----( 1741 uuu-ac)gga aa-au----- ---------- ----(uuuaa -----)---- ---------- 1801 ---------- -----|UUAA UCUU|A|AGG UGGUGCAUG| GUU|GUCGUC A|-G-CUAGU 1861 |GCU(GUGA) AGUAAUUAA( AUUAUU)UUA A-AACUAGCG UAACCCUUA| ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( ---------- )--------- 2101 |--------- -------uuu uaau(auau- ----)----- ---------- ---------a 2161 uauaau-uaa ACAAGGACGA UGUC-AA--A UCUUUAUGCC CCUUAUGUAU UGGGCUAU-U 2221 AGCGUGGCGC AACGAU--AA AAACAAAUGU AA----aaaa uauu------ ---uauuaaa 2281 uuuu(----a uga-)aaauu uuauaua--- ----uau--- UAUUA--A-A ACU-AAAUUU 2341 UAUCUCAGUA CGACAUAUAA AU(--UGAAA UCU)AUUUAU AUUUAGUAGU AACCACU--- 2401 ---AGUAAU- CGUUAG(UC- -AUAUAU)AU AACGGUGAAU AU--AUA--- ---------- 2461 -------AUU AAGUUUUGUA CACACCGCCC GUCGCAUCCU GAAAauaaa- uacgauacaa 2521 guuauu---- ---------- -(--uu-aua -------)-- ---------- ag-uaacaaa 2581 uu-uuugauu uguGAUUAGG AUGAAGUCGU AACAAGGUAA CCGUA~~(~~ ~~)~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS pl.B.bov.1 2717 bp RNA RNA 29-NOV-1995 DEFINITION Babesia bovis.; . ACCESSION U06105 KEYWORDS . SOURCE Babesia bovis. ORGANISM Babesia bovis. REFERENCE 1 (bases 1 to 1448) AUTHORS Gozar,M.M. and Bagnara,A.S. TITLE Babesia bovis: Nucleotide Sequence, Secondary Structure of the Transcript and Preliminary Phylogenetic Analysis An Organelle-like Small Subunit Ribosomal RNA Gene from JOURNAL Int. J. Parasit. 25, 929-938 (1995) STANDARD No information REFERENCE 2 (bases 1 to 1448) AUTHORS Gozar,M.M. TITLE Direct Submission JOURNAL Submitted (03-FEB-1994) Mary M. Gozar, Biochemistry and Molecular Genetics, University of New South Wales, Kensington (Sydney), NSW 2033, Australia STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U06105 BASE COUNT 562 a 160 c 240 g 486 t 1269 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ GAG-UU(U-G A)UCCU|GGC UCAGAAUGAA CGC-UUAAGA 61 CGUACUUUUA ACACAUGCuA AUUAAAUU|U A--------- aaa-uauuaa a(-a------ 121 ---------- --uu------ )uuuaaua-- --uuauu--- ------UAA- AUU--AGUGU 181 AGAGGUGAGU AA-UGAAUAG AA-CUAAAAU UGUA------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 AAU------- --CGAGGAUA A--------- ---------- --------cu a(uaag)ugu 361 -gc----auu uu-augu-gu ----guuuau acuaauuc-- ---------- ---------- 421 --------(- ------)--- ---------- ---------- ---ucuuuaa gugc------ 481 uaaaaa---- ------(cgu acaauu-aaa a------)-- -------|-U UUUuAUUUAC 541 AAAU-UAA|U -UCUAUUU|- UUGAUUA-GC UAUUUAA-UA -UU(A-AAAA AU)-AAUAUU 601 AA|GGUGAAG AU|CAAUAAC UG|GCCU(GA GA)GGGUUUA CAGU|CACAU CAGAA(UUGA 661 GAUAAA)AUC UGAA-U--UU C(UA-UA)GA -GagAGCAG- CAGUGGGG-A AUAUUCUA-C 721 AAU-UAGU-( -GAAA)-ACU A-GAUAGA|G UGACGUCGUG UGAAAAAGAU GAAAU(AAAA 781 UGUAA)AU-U Ucuguaaa-u aa|uUCU-aa AAcaug---- ---------- (--------) 841 ---------- ugau-|c--g aaU-UauaaG -AAAAUAUC| GGCA-AACU- CUGUG(CCA- 901 -GCAGCC|GC -GU---AA-) UACAGAG|GA UAUAAGCGUU AU-UCGCAUU UAUUGGGC|A 961 UAAAGCAUCC UUAGAUG|GU UUAUUAUA-| UUA-UUUUAA AAAU-UUAAA AA(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 -uaaua)UUU UUAA-ac-au uaaua-uuAA -gAU-U|AAU -AA-ACUUAG AG-GG|UAAA 1141 A-----UAAG UUUAA|GGAA UUUUUUG-AG UAAUG(GUGA AA)UAUGAUU UCUAUACAUU 1201 AAAGAAGGCC AAA---AAU( GAAA)GU|A| UUAAA-CUG| GUUUA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UUCUGACAUU 1321 |GGA-GGAUG AAAGCUAAAG UAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UU-UU 1381 A-GCCGUAAA UUAUGAAU-- --AU|U-|AA AA-UUUAG-- ---------- ----aaau(- 1441 --------aa u----)auuu ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|---UUAAA UUUA-A-aGU (UAAU)ACGU 1561 -UAAAUAUUC |C|GCCUGAA GAGUACACUC (GCAA)GAGU CAAAUUCAAA GGAACUGACG 1621 GGAACUU-AU ACA------- AGUGAU|GAG CUAUGUUGUU UAAUUUG-(A UGCAGCC)CA 1681 AAAAAUCUUA CCAAUAUUUA ACA----UA| -AU-UUA--A A-auaaauuu uuau-----( 1741 uaa-a-)aua aa-aau---- ---------- ----(guuaa -----)---- ---------- 1801 ---------- -----|UUAA UCUU|A|AGG UGGUGCAUG| GUU|GUCGUC A|-G-CUAGU 1861 |GCU(GUGA) AGUaaauca( uaaaau)aua a-AACUAGCG GAACCCUUA| u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( ---------- )--------- 2101 |--------- --------cu augu(cuau- ----)----- ---------- ---------a 2161 uauaguauaA AUAAGGACGA UGUC-AA--A UCUUUAUGCC CCUUAUGUAU UGGGCUAU-U 2221 AGCGUGGCGC AAUGAU--GA AUACAAGUGU AG----aaaa uauu------ ---uauuaaa 2281 cuuu(----u uaa-)aaagu uuauaaa--- ----uau--- gauucaaA-U GU--AAAUUU 2341 CAUCUCAGUA CGAUAUAUAA AU(--UGAAA UUU)AUUUAU AUAGAGUAGU AACCACU--- 2401 ---AGUAAU- CGUUAG(UC- -AUAUAU)AU AACGGUGAAU GA--AUA--- ---------- 2461 -------AUU AAGUUUUGUA CACACCGCCC GUCGCAUCCU GAAAaugga- gugaauuuaa 2521 auuauu---- ---------- -(--ua-aau -------)-- ---------- aa-uaauaaa 2581 ua-uucaauu cguGAUUAGG AUGAAGUCGU AACAAGGUAA CCCU~~~(~~ ~~)~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~-|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS pl.B.bov.2 2717 bp RNA RNA 12-DEC-1998 DEFINITION Chloroplast Babesia bovis.; . ACCESSION AF0409 9 KEYWORDS . SOURCE Chloroplast Babesia bovis. ORGANISM Chloroplast Babesia bovis. REFERENCE 1 (bases 1 to 963) AUTHORS Lang-Unnasch,N., Reith,M.E., Munholland,J. and Barta,J.R. TITLE phylum Apicomplexa Plastids are widespread and ancient in parasites of the JOURNAL Int. J. Parasitol. 28 (11), 1743-1754 (1998) STANDARD No information REFERENCE 2 (bases 1 to 963) AUTHORS Lang-Unnasch,N., Reith,M.E. and Munholland,J. TITLE Direct Submission JOURNAL Submitted (05-JAN-1998) Geographic Medicine, University of Alabama at Birmingham, 845 South 19th St., Birmingham, AL 35294-2170, USA STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: AF040969 BASE COUNT 368 a 112 c 163 g 320 t 1754 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~|~~~ ~~~~~~~~~~ ~~~-~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~-~~~~~~ ~(~~------ 121 ---------- --~~~~~~~~ )~~~~~~~-- -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ 361 ~~~~~~~~~~ ~~-~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- --------~~ 421 ~~~~~~~~(~ ~~~~~~)~~~ ~~~~~~~--- ---~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~-~~- -~~---(~~~ ~~~~~~-~~~ ~------)~~ ~---~~-|-~ ~~~~~~~~~~ 541 ~~~~~~~~|~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~-~~ -~~(~~~~~~ ~~)-~~~~~~ 601 ~~|~~~~~~~ ~~|~~~~~~~ ~~|~~~~(~~ ~~)~~~~~~~ ~~~~|~~~~~ ~~~~~(~~~~ 661 ~~~~~~)~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 721 ~~~~~~~~~( ~~~~~)~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ 781 ~~~~~)~~~~ ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~-~) 841 ~~~~~~~~~~ ~~~~~|~~~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~GUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACAGAG|GA UAUAAGCGUU AU-UCGCAUU UAUUGGGC|A 961 UAAAGCAUCC UUAGAUG|GU UUAUUAUA-| UUA-UUUUAA AAAU-UUAAA AA(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 -uaaua)UUU UUAA-ac-au uaaua-uuAA -gAU-U|AAU -AA-ACUUAG AG-GG|UAAA 1141 A-----UAAG UUUAA|GGAA UUUUUUG-AG UAAUG(GUGA AA)UAUGAUU UCUAUACAUU 1201 AAAGAAGGCC AAA---AAU( GAAA)GU|A| UUAAA-CUG| GUUUA--C-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UUCUGACAUU 1321 |GGA-GGAUG AAAGCUAAAG UAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UU-UU 1381 A-GCCGUAAA UUAUGAAU-- --AU|U-|AA AA-UUUAG-- ---------- ----aaau(- 1441 --------aa u----)auuu ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|---UUAAA UUUA-A-aGU (UAAU)ACGU 1561 -UAAAUAUUC |C|GCCUGAA GAGUACACUC (GCAA)GAGU CAAAUUCAAA GGAACUGACG 1621 GGAACUU-AU ACA------- AGUGAU|GAG CUAUGUUGUU UAAUUUG-(A UGCAGCC)CA 1681 AAAAAUCUUA CCAAUAUUUA ACA----UA| -AU-UUA--A A-auaaguuu uuau-----( 1741 uaa-a-)aua aa-aau---- ---------- ----(guuaa -----)---- ---------- 1801 ---------- -----|UUAA UCUU|A|AGG UGGUGCAUG| GUU|GUCGUC A|-G-CUAGU 1861 |GCU(GUGA) AGUaaauca( uaaaau)gua a-AACUAGCG GAACCCUUA| u--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( ---------- )--------- 2101 |--------- --------cu augu(cuau- ----)----- ---------- ---------a 2161 uauaguauaA AUAAGGACGA UGUC-AA--A UCUUUAUGCC CCUUAUGUAU UGGGCUAU-U 2221 AGCGUGGCGC AAUGAU--GA AUACAAGUGU AG----aaaa uauu------ ---uauuaaa 2281 cuuu(----u uaa-)aaagc uuauaaa--- ----uau--- gauucaaA-U GU--AAAUUU 2341 CAUCUCAGUA CGAUAUAUAA AU(--UGAAA UUU)AUUUAU AUAGAGUAGU AACCACU--- 2401 ---AGUAAU- CGUUAG(UC- -AUAUAU)AU AACGGUGAAU GA--AUA--- ---------- 2461 -------AUU AAGUUUUGUA CACACCGCCC GUCGCAUCCU GAAAaugga- gugaauuuaa 2521 auuauu---- ---------- -(--ua-aau -------)-- ---------- aa-uaauaaa 2581 ua-uucaauu cguGAUUAGG AUGAAGUCGU AACAAGGUAA CCGUA~~(~~ ~~)~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS (3)-Chlora 2717 bp RNA RNA 17-JAN-1994 DEFINITION Chlorarachniophyceae. ACCESSION No information KEYWORDS No information. SOURCE Chlorarachniophyceae. ORGANISM Chlorarachniophyceae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 2717 others ORIGIN 1 |......... .......... ...-...... .......... .......... .......... 61 .......... .......... .....--.-. .......... ...------- ---------- 121 ---------- ---------- ---------. ......---- -----..... ...--...-- 181 ---------- -------... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......--. 301 ...------- --....---- ---------- ---....... .....---.. ....--.... 361 -......... .-...-..-. ---------- ---------- -------... ..-....... 421 ..------.. ........-- ----...... .......... ..-------- ---------- 481 .......... .-..-....- .......--. .......... .......... ........-. 541 ....-..... -......... .........- -......... .-...-.... .......... 601 ......---- -.-.....|. .......... ...|.....| ...--..... .......... 661 ......-... .......-.. |...-..... -.--....-- -......... .....-..-. 721 .......... -...------ ---------- ---------- ---------- ---------- 781 ---------- ----...... .....----- --........ ..-.....-. |..-----.. 841 .--------- ------.... ......-... .......... .........- .........- 901 --.....-.. ...---..-| ......|... .-........ ..-....... ........|. 961 .......... .......... ........-. |..-...... .......... .......... 1021 .......... .......... .......... .......... .......... ....------ 1081 ---...-..- .......-.| .....---.. ......-... -..-.----. .|-....... 1141 ..----.... .......... ....------ -......-.. ...------- ---------- 1201 ---------- ---------- |--------- ---------- ...-.--... .......... 1261 .......... .......... .......... .........- ---------- ....-..... 1321 -....|.... .......... .......... .....-.... .-------.. .|.--..... 1381 ...-...-.. ........-- --..-..... ..-..-.... .-.....--- ---------- 1441 --------.. ..---..... ....--.--. ....----.- -..--..--- ---------- 1501 ---------- ---------- ---------- --....---- --------.. .......... 1561 -....|.... ..|..-.... .......... .....-.... .......... .......... 1621 ......-... .......... ......-... .......... .......... .....----- 1681 -.-------. .......... ....---..| ...-...... .------... ......---. 1741 ...-...... ..-....... .......--- ----...--- ------.--- -----..... 1801 ..-------- -----..... .--.|..... ..---..... ..-------- --........ 1861 .....--.-- .--....... ...------- ---------. .-........ ......-... 1921 ....-..... .......-.- -......... .........- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------. .......--- ...--..... 2101 .......... ....|||... .......... ----..---- ---....... ...------. 2161 .......... .......... .......--. .......... .......... ........-. 2221 .......... .......-.. .......... ...---.... ....------ ---------- 2281 ----.----. ...-...... .......... .......... ........-. .......... 2341 .......... .......... ...--..... .......... .......... .......--- 2401 ---....... .......... -......... .......... ...-....-- ---------- 2461 -------... .......... .......... .......... .......... .......... 2521 .......--- .......... .......... .......... .-........ .......-.. 2581 ..-....... .......... .......... .......... .......... .......... 2641 .......... .......-.. .......... .......... .......... .......... 2701 .......... ......| // LOCUS chl.Chl.re 2717 bp RNA RNA 11-JAN-191 DEFINITION Chlorarachnion reptans. ACCESSION No information KEYWORDS No information. SOURCE Chlorarachnion reptans. ORGANISM Chlorarachnion reptans. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U21490 LOCUS CRU21490 1436 bp rRNA PLN 16-MAR-1995 DEFINITION Chlorarachnion reptans chloroplast 16S small subunit rRNA gene. ACCESSION U21490 KEYWORDS . SOURCE Chlorarachnion reptans. ORGANISM Chloroplast Chlorarachnion reptans Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorarachniophyceae; Chlorarachnion. REFERENCE 1 (bases 1 to 1436) AUTHORS McFadden,G.I., Gilson,P.R. and Waller,R.F. TITLE Molecular phylogeny of chlorarachniophytes based on plastid rRNA and rbcL sequences JOURNAL Arch. Protistenkunde 154 (1995) In press REFERENCE 2 (bases 1 to 1436) AUTHORS McFadden,G.I. TITLE Direct Submission JOURNAL Submitted (22-FEB-1995) Geoffrey I. McFadden, School of Botany, University of Melbourne, Parkville, VIC 3052, Australia COMMENT NCBI gi: 710413 FEATURES Location/Qualifiers source 1..1436 /clone="pF69" /strain="CCMP 238" /organism="Chlorarachnion reptans" /chloroplast rRNA 1..1436 /product="16S small subunit rRNA" BASE COUNT 421 a 287 c 384 g 342 t 2 others ORIGIN BASE COUNT 421 a 287 c 384 g 342 t 1283 others ORIGIN 1 |--------- nnnnGGAUCC GAGUUU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCU---G ACACAUGCAA GUCGAACG|A AA-------- --------ag a(uu------ 121 ---------- --uaa----- )ucu------ ---------- ------UUU- AGU--GGCGC 181 ACGGGUGAGU AA-CGCGUAA GA-AUCUCC- CUCU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGU------- --AAAGGGUA ACAA------ ---------- --------UU G(GAAA)CGG 361 -UUGCUAAUA CU-UUAU-AU ---------- ---------- ---------- --------GC 421 U-------(G AGA---)--- ----AGU--- ---GAAAU-- ---------- ---------- 481 GAUgug-ua- ------(--- -----g-cag -------)-- ----ua-|-c gcAUUGCCUA 541 GUGA-UGA|G -CUUGCGU|- CUGAUUA-GC CUGUUGG-UA -AG(A-UAAU AG)-CUUACC 601 AA|AGCUAUA AU|CAGUAGC UG|GUCU(GA GA)GGAUGAA CAGC|CACAC CGGAA(CUUA 661 GACACG)GUC CGGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGAGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUACCGCG UGGAGGAUGA AAGCC(---U 781 AUG--)GG-U U--GUAAACU CC|UUUU-CU UAGAAAAGAA G--------- (---UUc--) 841 ---------- UGAcG|GU-A UCU-AAAGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGGG|GA UGCAAGCGUU AU-CCGGAAU UAUUGGGU|G 961 UAAAGCGUCU GUAGGUU|GC UUACUUAAG| UCA-GUUGUU AAAUUUCAGA AC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)AUU UUGA-UAAAG GCAAC--UGA -AAC-U|AAU -AA-G-CUAG AG-UC|GAGG 1141 A-----GAGG CAGAA|GGAA CUCCGAG-UG UAGCG(NUGA AA)UGCGUAG AUA---UUCG 1201 GAAGAACACC GAC---GGC( GAAA)GC|A| UUCUG-CUG| GGCUU--G-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACACU 1321 |GAG-AGACG AAAGCGAGGG GAGAGAAUGG G(AUU-A-GA UAC)-CCCAG UAU-|UC-CU 1381 C-GCCGUAAA CGAUGGAU-- --AU|UA|GG UA-UUAGAU- ---------- --------(- 1441 -------cuu uaua-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|--AUUUAG UACU-GAAGC (UAAC)GCAU 1561 -UAAAUAUCC |C|ACCUNGG GAGUAUGCUC (GCAA)GAGU GAAACUUAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGACAUG ACU----AC| -AU-CUA--U A------CCU CUUU-----( 1741 GAA-A-)GAA GA-GAU---- ---------- ----(ucua- -----)---- ---------- 1801 ---------- -----|AGGA U-GC|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUGA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUG| UUUUUA-G-U 1921 U--------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --auuu---- )--------- 2101 |----UUCUA GAAAUACUGC CGGU(GAUAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAUCAUGCC CCUUAAGUUC UGGGCUAC-A 2221 CACGUGCUAC AACGGU--UA AGACAAUGAG AU----GCAA AACU------ ---------- 2281 ----(----G CAA-)----- ---------- ----AGAU-G AGCCAACC-U -CAGAAACUU 2341 AAUCUCAGUU CGAAUUGUAG GC(--UGAAA CUC)GCCUAC AUGAAGUUGG AAUCGCU--- 2401 ---AGUAAU- CGCUGG(UC- -AGCUAC)AC AGCGGUGAAU AC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAC GGAAAUUGG- CUACACCCAA 2521 AGCUAUU--- ACCUU-AACC -(--aa-aua ca-----)-G G-AGA-GGG- GU-AUCU-AA 2581 GG-UGGAGUU AAUAACUGGG GUGAAGUCGA Cnnnnnnnnn nnnnnnn(nn nn)nnnnnnn 2641 nnnnnnnnnn nnnnnn--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.Ch.240 2717 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U21491 LOCUS CRU21491 1439 bp rRNA PLN 16-MAR-1995 DEFINITION Chlorarachnion sp. CCMP 240 chloroplast 16S small subunit rRNA gene. ACCESSION U21491 KEYWORDS . SOURCE Chlorarachnion sp. CCMP 240. ORGANISM Chloroplast Chlorarachnion sp. Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorarachniophyceae; Chlorarachnion. REFERENCE 1 (bases 1 to 1439) AUTHORS McFadden,G.I., Gilson,P.R. and Waller,R.F. TITLE Molecular phylogeny of chlorarachniophytes based on plastid rRNA and rbcL sequences JOURNAL Arch. Protistenkunde 154 (1995) In press REFERENCE 2 (bases 1 to 1439) AUTHORS McFadden,G.I. TITLE Direct Submission JOURNAL Submitted (22-FEB-1995) Geoffrey I McFadden, School of Botany, University of Melbourne, Parkville, VIC, 3052, Australia COMMENT NCBI gi: 710414 FEATURES Location/Qualifiers source 1..1439 /clone="pF70" /strain="CCMP 240" /organism="Chlorarachnion sp." /chloroplast rRNA 1..1439 /product="16S small subunit rRNA" BASE COUNT 422 a 283 c 379 g 355 t ORIGIN BASE COUNT 422 a 283 c 379 g 355 t 1278 others ORIGIN 1 |--------- nnnnGGAUCC GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCCU--G ACACAUGCAA GUCGAACG|A AA-------- --------ag a(uu------ 121 ---------- --uuu----- )ucu------ ---------- ------UUU- AGU--GGCGC 181 ACGGGUGAGU AA-CGCGUAA GA-AUUUGC- CUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGU------- --AGAGAAUA ACAA------ ---------- --------UU G(GAAA)CGG 361 -UUGCUAAUA CU-CUAU-AU ---------- ---------- ---------- --------GC 421 U-------(G GGA---)--- ----AGU--- ---GAAAU-- ---------- ---------- 481 AAUgug-ug- ------(--- ---uaa-cua u------)-- ----ua-|-c acUUUGCCUA 541 AAGA-GAA|G -CUUGCGU|- CUGAUUA-GC CUGUUGG-UA -AG(A-UAAU AG)-CUUACC 601 AA|AGCUAUU AU|CAGUAGC UG|GUCU(GA GA)GGACAAA CAGC|CACAC CGGAA(CUUA 661 GAUACG)GUC CGGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGAGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUACCGCG UGGAGGAUUA AAGCC(---C 781 AUG--)GG-U U--GUAAACU CC|UUUU-CU UAGAGGAGAA G--------- (---GUc--) 841 ---------- UGAcG|GU-A UCU-AAAGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGGG|GA UGCAAGCGUU AU-CCGGAAU UAUUGGGU|G 961 UAAAGCGUCU GUAGGUU|GC UUAUUUAAG| UCA-GUUGUU AAAUAUUAGG AC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)AUC UUGA-AA-CA GCAAC--UGA -AAC-U|AUU -AA-G-CUAG AG-UU|GAGU 1141 A-----GAGG CAGAA|GGAA CUCCGAG-UG UAGUG(GUGA AA)UGCGUAG AUA---UUCG 1201 GAAGAACACC GAA---GGC( GAAA)GC|A| UUCUG-CUG| GGCUA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACACU 1321 |GAG-AGACG AAAGCGAGGG GAGAGAAUGG G(AUU-A-GA UAC)-CCCAG UAU-|UC-CU 1381 C-GCCGUAAA CGAUGGAU-- --AU|UA|GA UA-UUAGGUa a--------- --------(- 1441 -------uag aa---)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- u|ugAUCUAG UA-U-CGAAC (UAAC)GCGU 1561 -UAAAUAUCC |C|ACCUGGG GAGUAUGCUC (GCAA)GAGU GAAACUUAAA GGAAUUGACG 1621 GGG-CCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCUACG)CG 1681 AAGAACCUUA CCAGGACUUG ACU----AC| -AU-CUA--U A------CCU CUUU-----( 1741 GAA-A-)GAA GA-GAA---- ---------- ----(ucuua -----)---- ---------- 1801 ---------- -----|AGGA U-GC|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUGA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUG| UUCUUA-G-U 1921 U--------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --aaau---- )--------- 2101 |----UUCUA AGAUUACUGC CGGU(GAUAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAUCAUGCC CCUUAAGUUC UGGGCUAC-A 2221 CACGUGCUAC AACGGU--UA ACACAAUGAG CU----GCAA UCUC------ ---------- 2281 ----(----G UAA-)----- ---------- ----GAAA-G AGCUAACC-U -CAGAAAUUU 2341 AACCUCAGUU CUAAUUGUAA GC(--UGAAA CUC)GCUUAC AUGAAGCUGG AAUCGCU--- 2401 ---AGUAAU- CGCUGG(UC- -AGCUAU)AC AGCGGUGAAU AC--GUU--- ---------- 2461 -------UCC GGGCCUUGUA CACACCGCCC GUCACACCAC GGAAAUUAG- CUACACCCAA 2521 AGCUAUU--- UACCUUAACC -(---u-aua u------)-G G-AGA-GGG- GU-AUCU-AA 2581 GG-UGGAGUU AAUAACUGGG GUGAAGUCGA Cnnnnnnnnn nnnnnnn(nn nn)nnnnnnn 2641 nnnnnnnnnn nnnnnn--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.Ch.242 2717 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U21492 LOCUS CRU21492 1434 bp rRNA PLN 16-MAR-1995 DEFINITION Chlorarachnion sp. CCMP 242 chloroplast 16S small subunit rRNA gene. ACCESSION U21492 KEYWORDS . SOURCE Chlorarachnion sp. CCMP 242. ORGANISM Chloroplast Chlorarachnion sp. Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorarachniophyceae; Chlorarachnion. REFERENCE 1 (bases 1 to 1434) AUTHORS McFadden,G.I., Gilson,P.R. and Waller,R.F. TITLE Molecular phylogeny of chlorarachniophytes based on plastid rRNA and rbcL sequences JOURNAL Arch. Protistenkunde 154 (1995) In press REFERENCE 2 (bases 1 to 1434) AUTHORS McFadden,G.I. TITLE Direct Submission JOURNAL Submitted (22-FEB-1995) Geoffrey I McFadden, School of Botany, University of Melbourne, Parkville, VIC, 3052, Australia COMMENT NCBI gi: 710415 FEATURES Location/Qualifiers source 1..1434 /clone="pF71" /strain="CCMP 242" /organism="Chlorarachnion sp." /chloroplast rRNA 1..1434 /product="16S small subunit rRNA" BASE COUNT 421 a 283 c 384 g 346 t ORIGIN BASE COUNT 421 a 283 c 384 g 346 t 1283 others ORIGIN 1 |--------- nnnnGGAUCC GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCCU--G ACACAUGCAA GUCGAACG|A GA-------- -------aaa c(uu------ 121 ---------- --u------- )guuu----- ---------- ------UCU- AGU--GGCGC 181 ACGGGUGAGU AA-CGCGUAA GA-AUCUAC- CUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGU------- --AGAGGAUA ACAA------ ---------- --------UU G(GAAA)CGA 361 -UUGCUAAUA CU-CUAU-AA ---------- ---------- ---------- --------GC 421 U-------(G AGA---)--- ----AGU--- ---GAAAU-- ---------- ---------- 481 GAUaua-u-- ------(--- -------uua u------)-- -----a-|-u auAUUGCCUA 541 GAGA-UGA|G -CUUGCGU|- CUGAUUA-GC CUGUUGG-UA -GG(G-UAAA AG)-CUUACC 601 AA|AGCUAUA AU|CAGUAGC UG|GUCU(GA GA)GGAUAGA CAGC|CACAC CGGAA(CUUA 661 GAUACG)GUC CGGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGAGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUACCGCG UGGAGGAUGA AAGCC(---U 781 AUG--)GG-U U--GUAAACU CC|UUUU-CU UAGAGAAGAA G--------- (---UUc--) 841 ---------- UGAcG|GU-A UCU-AAAGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGGG|GA UGCAAGCGUU AU-CCGGAAU UAUUGGGU|G 961 UAAAGCGUCU GUAGGUU|GC UUACUUAAG| UCA-GUUGUU AAAUUUCAGA AC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)AUU UUGA-UACCA GCAAC--UGA -AAC-U|AAU -AA-G-CUAG AG-UC|AAGU 1141 A-----GAGG UAGAA|GGAA CUCCGAG-UG UAGCG(GUGA AA)UGCGUAG AUA---UUCG 1201 GAAGAACACC GAU---GGC( GAAA)GC|A| UUCUG-CUG| GACUU--G-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACACU 1321 |GAG-AGACG AAAGCGAGGG GAGAGAAUGG G(AUU-A-GA UAC)-CCCAG UAU-|UC-CU 1381 C-GCCGUAAA CGAUGGAU-- --AU|UA|GG UA-UUAGGUa ---------- --------(- 1441 -------aaa u----)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-UAUUUAG UACU-GAAGC (UAAC)GCGU 1561 -UAAAUAUCC |C|ACCUGGG GAGUAUGCUC (GCAA)GAGU GAAACUUAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGACUCG ACU----AC| -AU-CUA--U C------GCU CUUU-----( 1741 GAA-A-)GAA GA-GAU---- ---------- ----(uguua -----)---- ---------- 1801 ---------- -----|AGGA U-GC|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUGA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUG| UUUUUA-G-U 1921 U--------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --auuu---- )--------- 2101 |----CUCUA AAAGUACUGC CGGU(GACAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAUCAUGCC CCUUAAGUUC UGGGCUAC-A 2221 CACGUGCUAC AACGAU--UA AGACAAUGAG AU----GCAA UACU------ ---------- 2281 ----(----G CAA-)----- ---------- ----AGAG-G AGCUAACC-U -CAGAAACUU 2341 AAUCUCAGUU CGAAUUGUAG GC(--UGAAA CUC)GCCUAC AUGAAGUUGG AAUCGCU--- 2401 ---AGUAAU- CGCUGG(UC- -AGCUAC)AC AGCGGUGAAU AC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAC GGAAAUUGG- CUACACCCAA 2521 AGCUAUU--- ACCUU-AACC -(--aa-auu ua-----)-G G-AGA-GGG- GU-AUCU-AA 2581 GG-UGGAGUU AAUAACUGGG GUGAAGUCGA Cnnnnnnnnn nnnnnnn(nn nn)nnnnnnn 2641 nnnnnnnnnn nnnnnn--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS (3)-Crypto 2717 bp RNA RNA 17-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 2717 others ORIGIN 1 |......... .......... ...-...... .......... .......... .......... 61 .......... .......... .....--.-. .......... ...------- ---------- 121 ---------- ---------- ---------. ......---- -----..... ...--...-- 181 ---------- -------... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......--. 301 ...------- --....---- ---------- ---....... .....---.. ....--.... 361 -......... .-...-..-. ---------- ---------- -------... ..-....... 421 ..------.. ........-- ----...... .......... ..-------- ---------- 481 .......... .-..-....- .......--. .......... .......... ........-. 541 ....-..... -......... .........- -......... .-...-.... .......... 601 ......---- -.-.....|. .......... ...|.....| ...--..... .......... 661 ......-... .......-.. |...-..... -.--....-- -......... .....-..-. 721 .......... -...------ ---------- ---------- ---------- ---------- 781 ---------- ----...... .....----- --........ ..-.....-. |..-----.. 841 .--------- ------.... ......-... .......... .........- .........- 901 --.....-.. ...---..-| ......|... .-........ ..-....... ........|. 961 .......... .......... ........-. |..-...... .......... .......... 1021 .......... .......... .......... .......... .......... ....------ 1081 ---...-..- .......-.| .....---.. ......-... -..-.----. .|-....... 1141 ..----.... .......... ....------ -......-.. ...------- ---------- 1201 ---------- ---------- |--------- ---------- ...-.--... .......... 1261 .......... .......... .......... .........- ---------- ....-..... 1321 -....|.... .......... .......... .....-.... .-------.. .|.--..... 1381 ...-...-.. ........-- --..-..... ..-..-.... .-.....--- ---------- 1441 --------.. ..---..... ....--.--. ....----.- -..--..--- ---------- 1501 ---------- ---------- ---------- --....---- --------.. .......... 1561 -....|.... ..|..-.... .......... .....-.... .......... .......... 1621 ......-... .......... ......-... .......... .......... .....----- 1681 -.-------. .......... ....---..| ...-...... .------... ......---. 1741 ...-...... ..-....... .......--- ----...--- ------.--- -----..... 1801 ..-------- -----..... .--.|..... ..---..... ..-------- --........ 1861 .....--.-- .--....... ...------- ---------. .-........ ......-... 1921 ....-..... .......-.- -......... .........- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------. .......--- ...--..... 2101 .......... ....|||... .......... ----..---- ---....... ...------. 2161 .......... .......... .......--. .......... .......... ........-. 2221 .......... .......-.. .......... ...---.... ....------ ---------- 2281 ----.----. ...-...... .......... .......... ........-. .......... 2341 .......... .......... ...--..... .......... .......... .......--- 2401 ---....... .......... -......... .......... ...-....-- ---------- 2461 -------... .......... .......... .......... .......... .......... 2521 .......--- .......... .......... .......... .-........ .......-.. 2581 ..-....... .......... .......... .......... .......... .......... 2641 .......... .......-.. .......... .......... .......... .......... 2701 .......... ......| // LOCUS chl.Cry.sp 2717 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X56806 LOCUS CRYCP16SRN 1700 bp ss-rRNA RNA 30-OCT-1991 DEFINITION Cryptomonas sp. gene for 16S ribosomal RNA ACCESSION X56806 KEYWORDS 16S ribosomal RNA. SOURCE Chloroplast Cryptomonas sp. DNA. ORGANISM Cryptomonas sp. Eukaryota; Fungi; Chromophycota; Cryptophyceae; Cryptomonadales; Cryptomonadaceae. REFERENCE 1 (bases 1 to 1700) AUTHORS Douglas,S.E. and Turner,S.M. TITLE Molecular evidence for the origin of plastids from a cyanobacterium-like ancestor JOURNAL J. Mol. Evol. 33, 267-273 (1991) STANDARD full automatic COMMENT *source: strain=F; *source: clone=pBSc15.5; From EMBL entry CS16SRN; dated 23-OCT-1991. FEATURES Location/Qualifiers -35_signal 68..73 /note="P1" -10_signal 88..93 /note="P1" -35_signal 119..124 /note="P2" -10_signal 139..144 /note="P2" rRNA 174..1666 /gene="16S rRNA" BASE COUNT 494 a 326 c 458 g 422 t ORIGIN BASE COUNT 414 a 311 c 432 g 336 t 1224 others ORIGIN 1 |--------- AAAUCAUGGA GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCUU--A ACACAUGCAA GUCGUACG|A A--------- -------agu u(uu------ 121 ---------- --u------- )aacu----- ---------- ------UU-- AGU--GGCGG 181 ACGGGUGAGU AA-CACGUGA GA-AUCUAC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ------aggA 301 GGA------- --GGGGGAUA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CU-CCAU-AU ---------- ---------- ---------- --------GC 421 U-------(G AAG---)--- ----AGU--- ---GAAA--- ---------- ---------- 481 GG-------- ------(--- -----g-aaa -------)-- -------|-- ---CCaCCUA 541 AGGA-AGA|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UA -GG(G-UAAG GG)-CCUACC 601 AA|GGCGACG AU|CAGUAGC UG|GUUU(GA GA)GGACGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GCAA)-GCC U-GACGGA|G CAAUACCGCG UGAGGGAUGA AGGCC(---U 781 GUG--)GG-U U--GUAAACC UC|UUUU-CU CAAGGAAGAA GU-------- (--------) 841 --------UC UGACG|GU-A CUU-GAGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACAGAG|GA UGCAAGCGUU AU-CCGGAAU UACUGGGC|A 961 UAAAGCGUCU GUAGGUU|GU UUAGUAAG-| UCU-GCUGUU AAAGACUAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CUAG-AA-AA GCAGU--GGA -AAC-U|GCU -AG-A-CUUG AG-UG|UGGU 1141 A-----GAGG UAGAG|GGAA UUCCUAG-UG UAGCG(GUGA AA)UGCGUAG AUA---UUAG 1201 GAAGAACACC AAU---GGC( GAAA)GC|A| CUUUA-CUG| GGCCA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- AACUGACACU 1321 |GAG-AGACG ACAGCUAGGG GAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CUAUGGAU-- --AC|UA|GA UG-UUGUACG ---------- --------(- 1441 ------uauu aacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUACAG UAUC-GUAGC (UAAG)GCGU 1561 -UAAGUAUCC |C|GCCUGGG AAGUACGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GUAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGUUUG ACA----UG| -UC-ACA--A A------UUU UCUU-----( 1741 GAA-A-)AAG AA-AAG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|UGUG AACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG UAACCCUUG| UUUUUA-G-U 1921 UGCCa-uca- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( -uuaagu--- )-------ug 2101 |GGCACUUUA AAAAGACUGC CGGU(GAUAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GUGAGGACGA CGUC-AA--G UCAGCAUGCC CCUUACACUC UGGGCUAC-A 2221 CACGUACUAC AAUGGU--CG AGACAAAAAG UC----GCAA ACUU------ ---------- 2281 ----(----G UGA-)----- ---------- ----AAGU-A AGCUAAUC-U UAU-AAACUC 2341 GAUCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGUUGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCUAU)AC GGCGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGAAGCUAG- UCAUACCCAA 2521 AGUCGUU--- ACCUU-AACC -(-----auu c------)-G G-AGG-GGG- GC-GCCU-AA 2581 GG-UAGGGUU AGUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUUA--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.G.th.1 2717 bp RNA RNA 15-SEP-1998 DEFINITION Chloroplast Guillardia theta.; . ACCESSION AF0414 8 X141 1 X623 9 X515 1 X145 4 X521 8 X529 2 X568 6 M765 KEYWORDS . SOURCE Chloroplast Guillardia theta. ORGANISM Chloroplast Guillardia theta. REFERENCE 1 (bases 47701 to 48415) AUTHORS Douglas,S.E. and Durnford,D.G. TITLE The small subunit of ribulose-1,5-bisphosphate carboxylase is plastid-encoded in the chlorophyll c-containing alga Cryptomonas phi JOURNAL Plant Mol. Biol. 13 (1), 13-20 (1989) STANDARD No information REFERENCE 2 (bases 45872 to 47981) AUTHORS Douglas,S.E., Durnford,D.G. and Morden,C.W. TITLE Nucleotide sequence of the gene for the large subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase from the chlorophyll c-containing Alga Cryptomonas F: evidence supporting the polyphyletic origin of plastids JOURNAL J. Phycol. 26, 500-508 (1990) STANDARD No information REFERENCE 3 (bases 43739 to 44938) AUTHORS Douglas,S.E. and Durnford,D.G. TITLE Nucleotide sequence of the genes for ribosomal protein S4 and tRNA(Arg) from the chlorophyll c-containing alga Cryptomonas phi JOURNAL Nucleic Acids Res. 18 (7), 1903 (1990) STANDARD No information REFERENCE 4 (bases 18535 to 19351) AUTHORS Douglas,S.E. and Durnford,D.G. TITLE Sequence analysis of the plastid rDNA spacer region of the chlorophyll c-containing alga Cryptomonas phi JOURNAL DNA Seq. 1 (1), 55-62 (1990) STANDARD No information REFERENCE 5 (bases 34539 to 35380) AUTHORS Reith,M. and Douglas,S. TITLE Localization of beta-phycoerythrin to the thylakoid lumen of Cryptomonas phi does not involve a signal peptide JOURNAL Plant Mol. Biol. 15 (4), 585-592 (1990) STANDARD No information REFERENCE 6 (bases 110917 to 113854) AUTHORS Douglas,S.E. TITLE Unusual organization of a ribosomal protein operon in the plastid genome of Cryptomonas phi: evolutionary considerations JOURNAL Curr. Genet. 19 (4), 289-294 (1991) STANDARD No information REFERENCE 7 (bases 40675 to 42376) AUTHORS Douglas,S.E. and Turner,S. TITLE Molecular evidence for the origin of plastids from a cyanobacterium-like ancestor JOURNAL J. Mol. Evol. 33 (3), 267-273 (1991) STANDARD No information REFERENCE 8 (bases 96129 to 98906) AUTHORS Wang,S.L. and Liu,X.Q. TITLE The plastid genome of Cryptomonas phi encodes an hsp70-like protein, a histone-like protein, and an acyl carrier protein JOURNAL Proc. Natl. Acad. Sci. U.S.A. 88 (23), 10783-10787 (1991) STANDARD No information REFERENCE 9 (bases 106789 to 108216) AUTHORS Douglas,S.E. TITLE A secY homologue is found in the plastid genome of Cryptomonas phi JOURNAL FEBS Lett. 298 (1), 93-96 (1992) STANDARD No information REFERENCE 10 (bases 42198 to 44153) AUTHORS Douglas,S.E. and Reith,M.E. TITLE A bchI homolog, encoding a subunit of Mg chelatase, is located on the plastid genomes of red and cryptomonad algae JOURNAL J. Mar. Biotechnol. 1, 135-141 (1993) STANDARD No information REFERENCE 11 (bases 82327 to 84479) AUTHORS Douglas,S.E. and Murphy,C.A. TITLE Structural, transcriptional and phylogenetic analyses of the atpB gene cluster from the plastid of Cryptomonas F (Cryptophyceae) JOURNAL J. Phycol. 30, 329-340 (1994) STANDARD No information REFERENCE 12 (bases 98901 to 114602) AUTHORS Wang,S.L., Liu,X.Q. and Douglas,S.E. TITLE The large ribosomal protein gene cluster of a cryptomonad plastid: gene organization, sequence and evolutionary implications JOURNAL Biochem. Mol. Biol. Int. 41 (5), 1035-1044 (1997) STANDARD No information REFERENCE 13 (bases 61067 to 68605) AUTHORS Leitsch,C.E.W., Kowallik,K.V. and Douglas,S.E. TITLE The atpA gene cluster of a cryptomonad, Guillardia theta: A piece in the puzzle of chloroplast genome development JOURNAL J. Phycol. (1998) In press STANDARD No information REFERENCE 14 (bases 1 to 121524) AUTHORS Douglas,S.E. and Penny,S.L. TITLE The plastid genome from the cryptomonad alga, Guillardia theta: complete sequence and conserved synteny groups confirm its common ancestry with red algae JOURNAL J. Mol. Evol. (1998) In press STANDARD No information REFERENCE 15 (bases 1 to 121524) AUTHORS Douglas,S.E. TITLE Direct Submission JOURNAL Submitted (08-JAN-1998) Institute for Marine Biosciences, National Research Council, 1411 Oxford Street, Halifax, Nova Scotia B3H 3Z1, Canada STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: AF0414 BASE COUNT 413 a 311 c 431 g 337 t 1225 others ORIGIN 1 |------ugg AAAUCAUGGA GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCUU--A ACACAUGCAA GUCGUACG|A A--------- --------ag u(uu------ 121 ---------- --uu------ )aacu----- ---------- ------UU-- AGU--GGCGG 181 ACGGGUGAGU AA-CACGUGA GA-AUCUAC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GGAGGAUA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CU-CCAU-AU ---------- ---------- ---------- --------GC 421 U-------(G AAG---)--- ----AGU--- ---GAAA--- ---------- ---------- 481 GG-------- ------(--- -----g-aaa -------)-- -------|-- --CCA-CCUA 541 AGGA-AGA|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UA -GG(G-UAAG GG)-CCUACC 601 AA|GGCGACG AU|CAGUAGC UG|GUUU(GA GA)GGACGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -Gcaa)-GCC U-GACGGA|G CAAUACCGCG UGAGGGAUGA AGGCC(---U 781 GUG--)GG-U U--GUAAACC UC|UUUU-CU CAAGGAAGAA GU-------- (--------) 841 --------UC UGACG|GU-A CUU-GAGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACAGAG|GA UGCAAGCGUU AU-CCGGAAU UACUGGGC|A 961 UAAAGCGUCU GUAGGUU|GU UUAGUAAG-| UCU-GCUGUU AAAGACUAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CUAG-AA-AA GCAGU--GGA -AAC-U|GCU -AG-A-CUUG AG-UG|UGGU 1141 A-----GAGG UAGAG|GGAA UUCCUAG-UG UAGCG(GUGA AA)UGCGUAG AUA---UUAG 1201 GAAGAACACC AAU---GGC( GAAA)GC|A| CUUUA-CUG| GGCCA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- AACUGACACU 1321 |GAG-AGACG ACAGCUAGGG GAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CUAUGGAU-- --AC|UA|GA UG-UUGUACG ---------- --------(- 1441 ------uauu aacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUACAG UAUC-GUAGC (UAAG)GCGU 1561 -UAAGUAUCC |C|GCCUGGG AAGUACGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GUAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGUUUG ACA----UG| -UC-ACA--A A------UUU UCUU-----( 1741 GAA-A-)AAG AA-AAG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|UGUG AACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG UAACCCUUG| UUUUUA-G-U 1921 UGCCA-Uca- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( -uuaagu--- )-------ug 2101 |GGCACUUUA AAAAGACUGC CGGU(GAUAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GUGAGGACGA CGUC-AA--G UCAGCAUGCC CCUUACACUC UGGGCUAC-A 2221 CACGUACUAC AAUGGU--CG AGACAAAAAG UC----GCAA ACUU------ ---------- 2281 ----(----G UGA-)----- ---------- ----AAGU-A AGCUAAUC-U UAU-AAACUC 2341 GAUCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGUUGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCUAU)AC GGCGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGAAGCUAG- UCAUACCCAA 2521 AGUCGUU--- ACCUU-AACC -(-----auu c------)-G G-AGG-GGG- GC-GCCU-AA 2581 GG-UAGGGUU AGUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUU---|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.G.th.2 2717 bp RNA RNA 15-SEP-1998 DEFINITION Chloroplast Guillardia theta.; . ACCESSION AF0414 8 X141 1 X623 9 X515 1 X145 4 X521 8 X529 2 X568 6 M765 KEYWORDS . SOURCE Chloroplast Guillardia theta. ORGANISM Chloroplast Guillardia theta. REFERENCE 1 (bases 47701 to 48415) AUTHORS Douglas,S.E. and Durnford,D.G. TITLE The small subunit of ribulose-1,5-bisphosphate carboxylase is plastid-encoded in the chlorophyll c-containing alga Cryptomonas phi JOURNAL Plant Mol. Biol. 13 (1), 13-20 (1989) STANDARD No information REFERENCE 2 (bases 45872 to 47981) AUTHORS Douglas,S.E., Durnford,D.G. and Morden,C.W. TITLE Nucleotide sequence of the gene for the large subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase from the chlorophyll c-containing Alga Cryptomonas F: evidence supporting the polyphyletic origin of plastids JOURNAL J. Phycol. 26, 500-508 (1990) STANDARD No information REFERENCE 3 (bases 43739 to 44938) AUTHORS Douglas,S.E. and Durnford,D.G. TITLE Nucleotide sequence of the genes for ribosomal protein S4 and tRNA(Arg) from the chlorophyll c-containing alga Cryptomonas phi JOURNAL Nucleic Acids Res. 18 (7), 1903 (1990) STANDARD No information REFERENCE 4 (bases 18535 to 19351) AUTHORS Douglas,S.E. and Durnford,D.G. TITLE Sequence analysis of the plastid rDNA spacer region of the chlorophyll c-containing alga Cryptomonas phi JOURNAL DNA Seq. 1 (1), 55-62 (1990) STANDARD No information REFERENCE 5 (bases 34539 to 35380) AUTHORS Reith,M. and Douglas,S. TITLE Localization of beta-phycoerythrin to the thylakoid lumen of Cryptomonas phi does not involve a signal peptide JOURNAL Plant Mol. Biol. 15 (4), 585-592 (1990) STANDARD No information REFERENCE 6 (bases 110917 to 113854) AUTHORS Douglas,S.E. TITLE Unusual organization of a ribosomal protein operon in the plastid genome of Cryptomonas phi: evolutionary considerations JOURNAL Curr. Genet. 19 (4), 289-294 (1991) STANDARD No information REFERENCE 7 (bases 40675 to 42376) AUTHORS Douglas,S.E. and Turner,S. TITLE Molecular evidence for the origin of plastids from a cyanobacterium-like ancestor JOURNAL J. Mol. Evol. 33 (3), 267-273 (1991) STANDARD No information REFERENCE 8 (bases 96129 to 98906) AUTHORS Wang,S.L. and Liu,X.Q. TITLE The plastid genome of Cryptomonas phi encodes an hsp70-like protein, a histone-like protein, and an acyl carrier protein JOURNAL Proc. Natl. Acad. Sci. U.S.A. 88 (23), 10783-10787 (1991) STANDARD No information REFERENCE 9 (bases 106789 to 108216) AUTHORS Douglas,S.E. TITLE A secY homologue is found in the plastid genome of Cryptomonas phi JOURNAL FEBS Lett. 298 (1), 93-96 (1992) STANDARD No information REFERENCE 10 (bases 42198 to 44153) AUTHORS Douglas,S.E. and Reith,M.E. TITLE A bchI homolog, encoding a subunit of Mg chelatase, is located on the plastid genomes of red and cryptomonad algae JOURNAL J. Mar. Biotechnol. 1, 135-141 (1993) STANDARD No information REFERENCE 11 (bases 82327 to 84479) AUTHORS Douglas,S.E. and Murphy,C.A. TITLE Structural, transcriptional and phylogenetic analyses of the atpB gene cluster from the plastid of Cryptomonas F (Cryptophyceae) JOURNAL J. Phycol. 30, 329-340 (1994) STANDARD No information REFERENCE 12 (bases 98901 to 114602) AUTHORS Wang,S.L., Liu,X.Q. and Douglas,S.E. TITLE The large ribosomal protein gene cluster of a cryptomonad plastid: gene organization, sequence and evolutionary implications JOURNAL Biochem. Mol. Biol. Int. 41 (5), 1035-1044 (1997) STANDARD No information REFERENCE 13 (bases 61067 to 68605) AUTHORS Leitsch,C.E.W., Kowallik,K.V. and Douglas,S.E. TITLE The atpA gene cluster of a cryptomonad, Guillardia theta: A piece in the puzzle of chloroplast genome development JOURNAL J. Phycol. (1998) In press STANDARD No information REFERENCE 14 (bases 1 to 121524) AUTHORS Douglas,S.E. and Penny,S.L. TITLE The plastid genome from the cryptomonad alga, Guillardia theta: complete sequence and conserved synteny groups confirm its common ancestry with red algae JOURNAL J. Mol. Evol. (1998) In press STANDARD No information REFERENCE 15 (bases 1 to 121524) AUTHORS Douglas,S.E. TITLE Direct Submission JOURNAL Submitted (08-JAN-1998) Institute for Marine Biosciences, National Research Council, 1411 Oxford Street, Halifax, Nova Scotia B3H 3Z1, Canada STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: AF0414 BASE COUNT 414 a 312 c 431 g 335 t 1225 others ORIGIN 1 |-------gg AAAUCAUGGA GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCUU--A ACACAUGCAA GUCGUACG|A A--------- --------ag u(uu------ 121 ---------- --uu------ )aacu----- ---------- ------UU-- AGU--GGCGG 181 ACGGGUGAGU AA-CACGUGA GA-AUCUAC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GGAGGAUA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CU-CCAU-AU ---------- ---------- ---------- --------GC 421 U-------(G AAG---)--- ----AGU--- ---GAAA--- ---------- ---------- 481 GG-------- ------(--- -----g-aaa -------)-- -------|-- --CCA-CCUA 541 AGGA-AGA|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UA -GG(G-UAAG GG)-CCUACC 601 AA|GGCGACG AU|CAGUAGC UG|GUUU(GA GA)GGACGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -Gcaa)-GCC U-GACGGA|G CAAUACCGCG UGAGGGAUGA AGGCC(---U 781 GUG--)GG-U U--GUAAACC UC|UUUU-CU CAAGGAAGAA GU-------- (--------) 841 --------UC UGACG|GU-A CUU-GAGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACAGAG|GA UGCAAGCGUU AU-CCGGAAU UACUGGGC|A 961 UAAAGCGUCU GUAGGUU|GU UUAGUAAG-| UCU-GCUGUU AAAGACUAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUAG-AA-AA GCAGU--GGA -AAC-U|GCU -AG-A-CUUG AG-UG|UGGU 1141 A-----GAGG UAGAG|GGAA UUCCUAG-UG UAGCG(GUGA AA)UGCGUAG AUA---UUAG 1201 GAAGAACACC AAU---GGC( GAAA)GC|A| CUUUA-CUG| GGCCA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- AACUGACACU 1321 |GAG-AGACG ACAGCUAGGG GAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CUAUGGAU-- --AC|UA|GA UG-UUGUACG ---------- --------(- 1441 ------uauu aacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUACAG UAUC-GUAGC (UAAG)GCGU 1561 -UAAGUAUCC |C|GCCUGGG AAGUACGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GUAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGUUUG ACA----UG| -UC-ACA--A A------UUU UCUU-----( 1741 GAA-A-)AAG AA-AAG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|UGUG AACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG UAACCCUUG| UUUUUA-G-U 1921 UGCCA-Uca- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( -uuaagu--- )-------ug 2101 |GGCACUUUA AAAAGACUGC CGGU(GAUAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GUGAGGACGA CGUC-AA--G UCAGCAUGCC CCUUACACUC UGGGCUAC-A 2221 CACGUACUAC AAUGGU--CG AGACAAAAAG UC----GCAA ACUU------ ---------- 2281 ----(----G UGA-)----- ---------- ----AAGU-A AGCUAAUC-U UAU-AAACUC 2341 GAUCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGUUGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCUAU)AC GGCGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGAAGCUAG- UCAUACCCAA 2521 AGUCGUU--- ACCUU-AACC -(-----auu c------)-G G-AGG-GGG- GC-GCCU-AA 2581 GG-UAGGGUU AGUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUUA--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.P.sali 2717 bp RNA RNA 11-JAN-191 DEFINITION Pyrenomonas salina. ACCESSION No information KEYWORDS No information. SOURCE Pyrenomonas salina. ORGANISM Pyrenomonas salina. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X55015 LOCUS PYACPALP16 1490 bp ss-mRNA ORG 25-MAR-1992 DEFINITION P.salina plastidal 16S ribosomal RNA ACCESSION X55015 KEYWORDS 16S ribosomal RNA. SOURCE Chloroplast Pyrenomonas salina RNA. ORGANISM Chloroplast Pyrenomonas salina Eukaryota; Fungi; Chromophycota; Cryptophyceae; Cryptomonadales; Cryptomonadaceae. REFERENCE 1 (bases 1 to 1490) AUTHORS Maerz,M., Wolters,J., Hofmann,C.J., Sitte,P. and Maier,U.G. TITLE Plastid DNA from pyrenomonas salina (cryptophyceae): Physical map, genes, and evolutionalry implications JOURNAL Curr. Genet. 21, 73-81 (1992) STANDARD full automatic COMMENT From EMBL entry PSALP16S; dated 29-JAN-1992. FEATURES Location/Qualifiers rRNA <1..>1490 /product="16S rRNA" BASE COUNT 403 a 323 c 435 g 329 t ORIGIN BASE COUNT 403 a 323 c 435 g 329 t 1227 others ORIGIN 1 |--------- auAUCAUGGA GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCUU--A ACACAUGCAA GUUGCACG|A G--------- --------ag u(uu------ 121 ---------- --uu------ )aacu----- ---------- ------CU-- AGU--AGCGG 181 ACGGGUGAGU AA-CACGUGA GA-AUCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GGAGGAUA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CU-CCAU-AU ---------- ---------- ---------- --------GC 421 U-------(G AAA---)--- ----AGU--- ---GAAA--- ---------- ---------- 481 GGA------- ------(--- -----u-uua -------)-- -------|-- --UCUGCCUA 541 AGGA-GGA|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(A-UAAA AG)-CUCACC 601 AA|GGCGACG AU|CAGUAGC UG|GUUU(GA GA)GGACGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-G-C U-GACGGA|G CAAUACCGCG UGAGGGAUGA AAGCC(---U 781 GUG--)GG-U U--GUAAACC UC|UUUU-CU CAAGGAAGAA GU-------- (--------) 841 --------UC UGACG|GU-A CUU-GAGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACAGAG|GA UGCAAGCGUU AU-CCGGAAU CACUGGGC|A 961 UAAAGCGUCU GUAGGUU|GU UUGGUAAG-| UCU-GCUGUU AAAUACUAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CUAG-GC-CA GCAGU--GGA -AAC-U|CUG -AG-C-AUUG AG-UA|UGGU 1141 A-----GAGG UAGAG|GGAA UUCCUAG-UG UAGCG(GUGA AA)UGCGUAG AUA---UUAG 1201 GAAGAACACC AAU---GGC( GAAA)AC|G| CUCUA-CUG| GGCCA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- AACUGACACU 1321 |CAG-AGACG ACAGCUAGGG GAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|GG UG-UUGCACG ---------- --------(- 1441 ------uauu aacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UAUC-GUAGC (UAAG)GCGU 1561 -UAAGUAUCC |C|GCCUGGG AAGUACGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GUAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -UC-ACG--A A------UCU UUCC-----( 1741 GAA-A-)AGA AA-GAG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGUG AACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG UAACCCUUG| UUUUUA-G-U 1921 UGCCA-Uca- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( -uuuagu--- )-------ug 2101 |GGCACUUUA AAGAGACUGC CGGU(GAUAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GUGAGGACGA CGUC-AA--G UCAGCAUGCC CCUUACGCCC UGGGCUAC-A 2221 CACGUACUAC AAUGGU--CG AGACAAAGAG CU----GCAA GUCU------ ---------- 2281 ----(----G CAA-)----- ---------- ----AGCA-A AGCUAAUC-U CAU-AAACUC 2341 GGUCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGGUGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCAAU)AC GGCGGUGAAU C---GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGAAGCUAG- CCACACCCAA 2521 AGUCGUU--- ACCUU-AACC -(-----auu u------)-G G-AGG-GGG- GC-GCCU-AA 2581 GG-UAGGGUU AGUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUUU--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS (3)-Glauco 2717 bp RNA RNA 17-JAN-1994 DEFINITION Glaucocystophyceae. ACCESSION No information KEYWORDS No information. SOURCE Glaucocystophyceae. ORGANISM Glaucocystophyceae. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 2717 others ORIGIN 1 |......... .......... ...-...... .......... .......... .......... 61 .......... .......... .....--.-. .......... ...------- ---------- 121 ---------- ---------- ---------. ......---- -----..... ...--...-- 181 ---------- -------... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......--. 301 ...------- --....---- ---------- ---....... .....---.. ....--.... 361 -......... .-...-..-. ---------- ---------- -------... ..-....... 421 ..------.. ........-- ----...... .......... ..-------- ---------- 481 .......... .-..-....- .......--. .......... .......... ........-. 541 ....-..... -......... .........- -......... .-...-.... .......... 601 ......---- -.-.....|. .......... ...|.....| ...--..... .......... 661 ......-... .......-.. |...-..... -.--....-- -......... .....-..-. 721 .......... -...------ ---------- ---------- ---------- ---------- 781 ---------- ----...... .....----- --........ ..-.....-. |..-----.. 841 .--------- ------.... ......-... .......... .........- .........- 901 --.....-.. ...---..-| ......|... .-........ ..-....... ........|. 961 .......... .......... ........-. |..-...... .......... .......... 1021 .......... .......... .......... .......... .......... ....------ 1081 ---...-..- .......-.| .....---.. ......-... -..-.----. .|-....... 1141 ..----.... .......... ....------ -......-.. ...------- ---------- 1201 ---------- ---------- |--------- ---------- ...-.--... .......... 1261 .......... .......... .......... .........- ---------- ....-..... 1321 -....|.... .......... .......... .....-.... .-------.. .|.--..... 1381 ...-...-.. ........-- --..-..... ..-..-.... .-.....--- ---------- 1441 --------.. ..---..... ....--.--. ....----.- -..--..--- ---------- 1501 ---------- ---------- ---------- --....---- --------.. .......... 1561 -....|.... ..|..-.... .......... .....-.... .......... .......... 1621 ......-... .......... ......-... .......... .......... .....----- 1681 -.-------. .......... ....---..| ...-...... .------... ......---. 1741 ...-...... ..-....... .......--- ----...--- ------.--- -----..... 1801 ..-------- -----..... .--.|..... ..---..... ..-------- --........ 1861 .....--.-- .--....... ...------- ---------. .-........ ......-... 1921 ....-..... .......-.- -......... .........- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------. .......--- ...--..... 2101 .......... ....|||... .......... ----..---- ---....... ...------. 2161 .......... .......... .......--. .......... .......... ........-. 2221 .......... .......-.. .......... ...---.... ....------ ---------- 2281 ----.----. ...-...... .......... .......... ........-. .......... 2341 .......... .......... ...--..... .......... .......... .......--- 2401 ---....... .......... -......... .......... ...-....-- ---------- 2461 -------... .......... .......... .......... .......... .......... 2521 .......--- .......... .......... .......... .-........ .......-.. 2581 ..-....... .......... .......... .......... .......... .......... 2641 .......... .......-.. .......... .......... .......... .......... 2701 .......... ......| // LOCUS Cya.par.cy 2717 bp RNA RNA 11-JAN-191 DEFINITION Cyanophora paradoxa cyanelle. ACCESSION No information KEYWORDS No information. SOURCE Cyanophora paradoxa cyanelle. ORGANISM Cyanophora paradoxa cyanelle. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U30821 LOCUS CPU30821 135599 bp DNA circular PLN 10-OCT-1995 DEFINITION Cyanophora paradoxa cyanelle, complete genome. ACCESSION U30821 KEYWORDS . SOURCE Cyanophora paradoxa. ORGANISM Cyanelle Cyanophora paradoxa Eukaryotae; mitochondrial eukaryotes; Glaucocystophyceae; Cyanophoraceae; Cyanophora. REFERENCE 1 (bases 1 to 135599) AUTHORS Stirewalt,V.L., Michalowski,C.B., Luffelhardt,W., Bohnert,H.J. and Bryant,D.A. TITLE Nucleotide sequence of the cyanelle genome from Cyanophora paradoxa JOURNAL Unpublished REFERENCE 2 (bases 1 to 135599) AUTHORS Bryant,D.A. TITLE Direct Submission JOURNAL Submitted (01-JUL-1995) Donald A. Bryant, Biochemistry and Molecular Biology, The Pennsylvania State University, S-234 Frear Bldg., University Park, PA 16802, USA COMMENT NCBI gi: 1016083 FEATURES Location/Qualifiers source 1..135599 /cyanelle /strain="Pringsheim LB555" /organism="Cyanophora paradoxa" repeat_region 1..11285 /note="IR-A" /rpt_type=inverted rRNA 294..1788 /gene="rrsA" /product="16S ribosomal RNA" tRNA 1889..1962 /gene="trnI" /note="anticodon (GAU)" /product="tRNA isoleucine" tRNA 1966..2038 /gene="trnA" /note="anticodon (UGC)" /product="tRNA alanine" rRNA 2076..5001 /gene="rrlA" /product="23S ribosomal RNA" rRNA 5102..5219 /gene="rrfA" /product="5S ribosomal RNA" CDS 5727..7598 /gene="dnaK" /note="NCBI gi: 1016084" /codon_start=1 /function="molecular chaperone; heat-shock protein; protein folding" /product="DnaK" /translation="MEVKHMGKIVGIDLGTTNSVVAVMEGGKPTVITNAEGFRTTPSV VAYTKTGDRLVGQIAKRQAVLNPGNTFYSVKRFIGRKFDEVTEEAKQVPYKVTGTQNV RIECPALQTSFTPEEISAQVLRKLAEDASKYIGEPVTQAVITVPAYFNDSQRQATKDA GKIAGLEVLRIINEPTAASLAYGLDKKKNETILVFDLGGGTFDVSILEVGDGVFEVLS TSGDTHLGGDDFDKKLVDFFIEEFQKLENINLREDQQALQRLTEAAEKAKIELSSVTQ TEITLPFLSLTPSGPKHFDTTLNRAKFEELCSTLIDRCRIPVETALKDAKLTKEDIDE VVLVGGSTRIPAVRELVQKVLDKVPKQSVNPDEVVAVGAAVQAGVLAGEVKDIVLLDV TPLSLGVETLGGVMSKIIVRNTTIPTQKSELFSTATDGQTNVEIHVLQGERGFAKDNK SLGTFRLDGIAPAPRGVPQIEVTFDIDANGILSVTAKDKGTGKEKSITITGASTLSQD EVERMVQEAEKNAAQDKENRQKIELRNQAESLINQAERQLKEFKLEPNVQAPIEQTIQ QLQTALKEDNLEQVQSLCQELQNSLLEIGKQVYSKTETTTPNKNEEDVIDASFSEEK" BASE COUNT 46690 a 21195 c 20119 g 47595 t ORIGIN BASE COUNT 384 a 335 c 458 g 318 t 1222 others ORIGIN 1 |~~~~~~~~~ ~UACCAUGGA GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCUU--A ACACAUGCAA GUCGAACG|A AG-------- --------au c(gc------ 121 ---------- --aa------ )gau------ ---------- ------CUU- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUGA GA-AUCUAC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GGGGGACA ACAG------ ---------- --------UU G(GAAA)CGA 361 -CUGCUAAUA CC-CCAU-AU ---------- ---------- ---------- --------gc 421 ca------(u ucg---)--- ---uggu--- ---GAAA--- ---------- ---------- 481 AGA------- ------(--- -------gua a------)-- -------|-- --UCUGCCUG 541 AGGA-AGA|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UG -GG(G-UAAA GG)-CCUACC 601 AA|GGCGACG AU|CAGUAGC UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GAUACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUACCGCG UGAGGGAAGA CGGCC(---U 781 GUG--)GG-U U--GUAAACC UC|UUUU-CU UAGGGAAGAA Uca------- (--------) 841 ---------A UGACG|GU-A CCU-AAGGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGAG|GA UGCAAGCGUU AU-CCGGAAU CAUUGGGC|G 961 UAAAGAGUUC GUAGGUG|GC UAAGCAAG-| UCU-GUUGUU AAAGGCUGGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CCAA-AA-AG GCAAU--GGA -AAC-U|GUU -UG-G-CUUG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUCCUGG-UG UAGCG(GUGA AA)UGCGUAG AUA---UCAG 1201 GAAGAACACC GAU---GGC( GAAA)GC|A| CUCUG-CUG| GGCCG--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACACU 1321 |GAG-GAACG AAAGCUAGGG UAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CUAUGGAU-- --AC|UA|GG UG-UUGUGCG ---------- --------(- 1441 ------uauc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUACAG UACC-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GUAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGUUUG ACA----UG| -UC-GCG--A A------UUU UCUU-----( 1741 GAA-A-)GAG AA-AAG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCG AACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UUUUUA-G-U 1921 UGCC-auca- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --uucagu-- )-------ug 2101 |GGCACUCUA AAGAGACUGC CGGU(GACAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGGGGAUGA CGUC-AA--G UCAGCAUGCC CCUUAUACCC UGGGCUAC-A 2221 CACGUACUAC AAUGGU--CG GGACAAUAGG UU----GCCA ACUU------ ---------- 2281 ----(----G CGA-)----- ---------- ----AAGU-G AGCUAAUC-C G-UUAAACCC 2341 GGCCUCAGUU CAGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGGUGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCUAU)AC GGCGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAC GGGAGUCGG- CCAUGCCCGA 2521 AGUCGUU--- ACCCU-AACC -(---a-uuu c------)-G G-AGG-GGG- AU-GCCU-AA 2581 GG-CAGGGCU GGUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUUU--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.C.para 2717 bp RNA RNA 11-JAN-191 DEFINITION Cyanophora paradoxa. ACCESSION No information KEYWORDS No information. SOURCE Cyanophora paradoxa. ORGANISM Cyanophora paradoxa. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X81840 LOCUS Cpar16S_ 1514 BP DEFINITION Cyanophora paradoxa plastid 16S rRNA, Kies strain, X81840, d, Bhattacha ORIGIN BASE COUNT 396 a 329 c 460 g 319 t 1213 others ORIGIN 1 |--------- GUGCUGCAGA GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCUU--A ACACAUGCAA GUCGAACG|A AG-------- --------au c(gc------ 121 ---------- --aa------ )gau------ ---------- ------CUU- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUGA GA-AUCUAC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GGGGGACA ACAG------ ---------- --------UU G(GAAA)CGA 361 -CUGCUAAUA CC-CCAU-AU ---------- ---------- ---------- --------GC 421 Cauuuaa-(G UAAaa-)uua aauuGGU--- ---GAAA--- ---------- ---------- 481 AGA------- ------(--- -------gua a------)-- -------|-- --UCUGCCUG 541 AGGA-ANA|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UG -GG(G-UAAA GG)-CCUACC 601 AA|GGCGACG AU|CAGUAGC UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GAUACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-G-C U-GACGGA|G CAAUACCGCG UGAGGGAAGA AGGCC(---U 781 GUG--)GG-U U--GUAAACC UC|UUUU-CU UAGGGAAGAA U--------- (---Aaa--) 841 ---------- UGAcG|GU-A CCU-AAGGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGAG|GA UGCAAGCGUU AU-CCGGAAU CAUUGGGC|G 961 UAAAGAGUUC GUAGGUG|GC UAAGCAAG-| UCU-GUUGUU AAAGGCUGGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CCAA-AA-AG GCAAU--GGA -AAC-U|GUU -UG-G-CUCG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUCCUGG-UG UAGCG(GUGA AA)UGCGUAG AUA---UCAG 1201 GAAGAACACC GAU---GGC( GAAA)GC|A| CUCUG-CUG| GGCCG--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- AACUGACACU 1321 |GAG-GAACG AAAGCUAGGG UAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CUAUGGAU-- --AC|UA|GG UG-UUGUGCG ---------- --------(- 1441 ------uauc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUACAG UACC-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GUAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGUUUG ACA----UG| -UC-GCG--A A------UUU UCUU-----( 1741 GAA-A-)GAG AA-AAG---U G--C------ ----(uucg- -----)---- -----GGAA- 1801 ---------- -----|CGCG AACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UUUUUA-G-U 1921 UGCC-agca- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --uuaagu-- )-------ug 2101 |GGCACUCUA AAGAGACUGC CGGU(GACAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGGGGAUGA CGUC-AA--G UCAGCAUGCC CCUUAUACCC UGGGCUAC-A 2221 CACGUACUAC AAUGGU--CG GGACAAUAGG UU----GCCA ACUU------ ---------- 2281 ----(----G CGA-)----- ---------- ----AAGU-G AGCUAAUC-C -NUUAAACCC 2341 GGCCUCAGUU CAGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGGUGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCUAU)AC GGCGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAC GGGAGUCGG- CCAUGCC-GA 2521 AGUCGUU--- ACCCU-AACC -(---a-uuu c------)-G G-AGG-GGG- AU-GCCU-AA 2581 GG-CAGGGCU GGUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGUGG 2641 CUGGAUCACC UCCUUG--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.G.nost 2717 bp RNA RNA 11-JAN-191 DEFINITION Glaucocystis nostochinearum. ACCESSION No information KEYWORDS No information. SOURCE Glaucocystis nostochinearum. ORGANISM Glaucocystis nostochinearum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X82496 LOCUS Gnos16S_ 1527 BP DEFINITION Glaucocystis nostochinearum plastid 16S rRNA, SAG 45.88, X82496, eleased, Bha ORIGIN BASE COUNT 395 a 328 c 469 g 328 t 1197 others ORIGIN 1 |--------- GUGCUGCAGA GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCUU--A ACACAUGCAA GUCGAACG|G AG-------- --------au c(ga------ 121 ---------- --aa------ )gau------ ---------- ------CUU- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUGA GA-ANCUGC- CUCU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GGGGGACA ACAGgaagag aacaauagga cucuuuucGC C(GAAA)GGU 361 -CUGCUAAUA CC-CCAU-AU ---------- ---------- ---------- --------GC 421 C-------(G UAA---)--- ----GGU--- ---GAAA--- ---------- ---------- 481 GGAUU----- ------(--- -------ucu -------)-- -------|-- AAUCUGCCUG 541 GAGA-AGA|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UA -AG(G-UAAC GG)-CUUACC 601 AA|GGCGACG AU|CAGUAGC UG|GUCU(GA GA)GGAUGAC CAGC|CACAC UGGGA(CUGA 661 GAUACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-G-C U-GACGGA|G CAAUACCGCG UGAGGGAAGA AGGCC(---U 781 GUG--)GG-U U--GUAAACC UC|UUUU-CU CAGGGAAGAA G--------- (---Aua--) 841 ---------- UGACG|GU-A CCU-GAGGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGAG|GA UGCAAGCGUU AU-CCGGAAU UAUUGGGC|G 961 UAAAGAGUUC GUAGGUG|GU UUAAUAAG-| UCU-GUUGUU AAAGAUUGGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CCAA-AC-AG GCAAU--GGA -AAC-U|GUU -AG-G-CUUG AG-UA|CGGU 1141 A-----GGGG UAGAG|GGAA UUCCCGG-UG UAGCG(GUGA AA)UGCGUAG AUA---UCGG 1201 GAAGAACACC AAU---GGC( GAAA)GC|A| CUCUG-CUG| GGCCG--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACACU 1321 |GAG-GAACG AAAGCUAGGG GAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCUGUAAA CGAUGGAU-- --AC|UA|GG UG-UUGUACG ---------- --------(- 1441 ------uauc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUACAG UACU-GUACG (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGAUUUG ACA----UG| -UC-GCG--A A------UUU UCUU-----( 1741 GAA-A-)AAG AA-AAG---U G--CC----- ----(uucg- -----)---- -----GGAG- 1801 ---------- -----|CGCG AACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUG| UUUUUA-G-U 1921 UGCC-agca- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --uucagu-- )-------ug 2101 |GGUACUCUA AAGAAACUGC CGGU(GACAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GGAGGGAUGA CGUC-AA--G UCAGCAUGCC CCUUAUAUCC UGGGCUAC-A 2221 CACGUGCUAC AAUGGC--CG GGACAAAAGG UC----GCGA ACUU------ ---------- 2281 ----(----G UGA-)----- ---------- ----AAGU-A AGCCAAUC-C UAU-AAACCC 2341 GGUCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGGUGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCUAU)AC GGCGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGGAGUUGG- CCACGCC-GA 2521 AGUCGUU--- ACCCU-AACU -(---u-uuu u------)-A G-AGG-GGG- AC-GCCG-nn 2581 nn-nnGGGCU GGUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGUGG 2641 UUGGAUCACC UCCUUG--|G AUCCGUG~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.G.vacu 2717 bp RNA RNA 11-JAN-191 DEFINITION Glaucosphaera vacuolata. ACCESSION No information KEYWORDS No information. SOURCE Glaucosphaera vacuolata. ORGANISM Glaucosphaera vacuolata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X81903 LOCUS PGV16RNA 1507 bp DNA PLN 23-FEB-1995 DEFINITION G.vacuolata 16S rRNA gene (plastid encoded). ACCESSION X81903 KEYWORDS 16S rRNA; plastid 16S small subunit ribosomal RNA. SOURCE Glaucosphaera vacuolata. ORGANISM Glaucosphaera vacuolata Eukaryota; Plantae; Thallobionta; Cryptophyta; Cryptophyceae; Cryptomonadales; Glaucocystophyta; Glaucocystophyceae; Gloeochaetales; Glaucosphaeraceae. REFERENCE 1 (bases 1 to 1507) AUTHORS Bhattacharya,D. TITLE Direct Submission JOURNAL Submitted (26-SEP-1994) to the EMBL/GenBank/DDBJ databases. D. Bhattacharya, Botanisches Institut, Universitaet zu Koeln, Gyrhofstr. 15, Lehrstuhl I, 50931 Koeln, FRG REFERENCE 2 (bases 1 to 1507) AUTHORS Helmchen,T., Bhattacharya,D. and Melkonian,M. TITLE Analysis of ribosomal RNA sequences from Glaucocystophyte Cyanelles provide new insights into the evolutionary relationships of plastids JOURNAL Unpublished COMMENT NCBI gi: 683659 FEATURES Location/Qualifiers source 1..1507 /organism="Glaucosphaera vacuolata" /strain="SAG B 13.82" /note="plastid DNA" primer_bind 1..30 rRNA 31..1476 /product="plastid-encoded 16S small subunit ribosomal RNA" primer_bind 1477..1507 BASE COUNT 428 a 300 c 422 g 356 t 1 others ORIGIN BASE COUNT 428 a 300 c 422 g 356 t 1211 others ORIGIN 1 |--------- GUGCUGCAGA GAG-UU(UCG A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCUU--A ACACAUGCAA GUCGUACG|G AA-------- --------gu u(gu------ 121 ---------- --caa----- )aac------ ---------- ------UUU- AGU--GGCGG 181 ACGGGUGAGA AC-AACAUAA GA-AUCUGC- UUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --AGAGGAUA ACAA------ ---------- --------UC G(GAAA)CGA 361 -UUGCUAAUA CU-CUAU-GU ---------- ---------- ---------- --------GC 421 U-------(G UAA---)--- ----AGU--- ---GAAA--- ---------- ---------- 481 GGA------- ------(--- -----g-caa -------)-- -------|-- --UCCGCCUG 541 AAAU-AGA|G -CUUGUGU|C CUGAUUA-GC UAGUUGG-UA -GG(G-UAAG AG)-CCUACC 601 AA|GGCGACG AU|CAGUAGC UG|GUCU(GA GA)GGACGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUACCGCG UGAGGGAAGA AGGUC(---U 781 CUG--)GA-U U--GUAAACC UC|UUUU-GU UGGGAAAGAA ---------- (---UUU--) 841 ---------- UGAcG|GU-A CCC-AACGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGAG|GA UGCAAGCGUU AU-CCGGAAU CAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GU UUUUUAAG-| UCU-AUUGUU AAAUAUUAAG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC UUGA-UU-CA GCAUU--GGA -AAC-U|GUU -AA-A-CUAG AG-UA|UGGU 1141 A-----AAGG UAGAA|GGAA UUUCCAG-UG UAGCG(GUGA AA)UGCGUAG AUA---UUGG 1201 GAAGAACACC AGU---GGC( GAAA)GC|G| UUCUA-CUA| GACCA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- AACUGACACU 1321 |GAG-AGACG AAAGCUAAGG UAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-UU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|GA UG-UUGUGCA ---------- --------(- 1441 ------cuau uaagu)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-UGUAUAG UAUC-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG AAGUAUGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAAAAUUUG ACA----UA| -UC-GUG--A AU----UUUU AGUU-----( 1741 GAA-A-)GAU GA-GAAg--U G--CC----- ----(uuag- -----)---- -----GGAA- 1801 ---------- -----|CACG AAUA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG UAACCCUUG| UCUUUA-G-U 1921 UGCC-auca- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --uuuagu-- )-------ug 2101 |GGAACUCUA AAGAGACUGC UGGU(GACAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GUAAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACAUUU UGGGCUAC-A 2221 CACGUGCUAC AAUGGU--UG GGACAAAGAG CU----GCAA ACCU------ ---------- 2281 ----(----G CGA-)----- ---------- ----AGGU-U AGCGAAUC-U CGU-AAACCU 2341 AGCCUAAGUU CAGAUCGUAG GC(--UGCAA CUC)GCCUAC GUGAAGAUGG AAUCGCU--- 2401 ---AGUAAU- CGCCGA(UC- -AGCUAU)AC GGCGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACNAU GGAAGUCAA- CUACGCCCAA 2521 AGGUUAU--- UUUCUUAACC -(-----gua a------)-- G-AGA-GAG- GU-ACCU-AA 2581 GG-CAGAGUU GGUAACUAGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGUGG 2641 CUGGAUCACC UCCUUG--|G AUCCGUG~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.G.witt 2717 bp RNA RNA 11-JAN-191 DEFINITION Gloeochaete wittrockiana. ACCESSION No information KEYWORDS No information. SOURCE Gloeochaete wittrockiana. ORGANISM Gloeochaete wittrockiana. REFERENCE 1 (bases 47701 to 48415) AUTHORS No information JOURNAL Gloeochaete wittrockiana plastid 16S rRNA, SAG B 46.84,??X81901??, STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X82495 LOCUS GW16SRRNA 1527 bp DNA PLN 23-FEB-1995 DEFINITION G.wittrockiana plastid 16S rRNA gene. ACCESSION X82495 KEYWORDS 16S ribosomal RNA; 16S rRNA gene. SOURCE Gloeochaete wittrockiana. ORGANISM Gloeochaete wittrockiana Eukaryota; Plantae; Thallobionta; Cryptophyta; Cryptophyceae; Cryptomonadales; Glaucocystophyta; Glaucocystophyceae; Gloeochaetales; Gloeochaetaceae. REFERENCE 1 (bases 1 to 1527) AUTHORS Bhattacharya,D. TITLE Direct Submission JOURNAL Submitted (03-NOV-1994) to the EMBL/GenBank/DDBJ databases. D. Bhattacharya, Botanisches Institut, Universitaet zu Koeln, Gyrhofstr. 15, Lehrstuhl I, 50931 Koeln, FRG REFERENCE 2 (bases 1 to 1527) AUTHORS Helmchen,T., Bhattacharya,D. and Melkonian,M. TITLE Analyses of ribosomal RNA sequences from Glaucocystophyte cyanelles provide new insights into the evolutionary relationships of plastids JOURNAL Unpublished COMMENT NCBI gi: 683568 FEATURES Location/Qualifiers source 1..1527 /organism="Gloeochaete wittrockiana" /sub_species="Lagerheim" /strain="SAG B 46.84" /note="plastid" primer_bind 1..30 rRNA <31..>1496 /gene="16S rRNA" /note="PCR amplified plastid DNA" /product="16S small subunit ribosomal RNA" primer_bind 1497..1527 BASE COUNT 417 a 305 c 445 g 353 t 7 others ORIGIN BASE COUNT 416 a 303 c 442 g 351 t 1205 others ORIGIN 1 |--------- GUGCUGCAGA GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCUU--A ACACAUGCAA GUCGAACG|A AA-------- --------au u(ga------ 121 ---------- --aa------ )aau------ ---------- ------UUU- AGU--GGCGA 181 ACGGGUGAGU AA-CGCGUGA GA-AUCUGC- CUCA------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GGAGGAUA ACAGuaggaa ugcaaguucc uugu----GU C(GAAA)GAU 361 -CUGCUAAUA CU-CCGU-AU ---------- ---------- ---------- --------GC 421 C-------(G AAA---)--- ----GGU--- ---GAAA--- ---------- ---------- 481 GGAUUG-A-- ------(--- -------uuu -------)-- ----uc-|-- AAUCUGCCUA 541 GAGA-AGA|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UA -AG(G-UAAU GG)-CUUACC 601 AA|GGCGAUG AU|CAGUAGC UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GAUACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-G-C U-GACGGA|G CAAUACCGCG UGAGGGAUGA AGGCC(---U 781 UUG--)GG-U U--GUAAACC UC|UUUU-CU CAAGGAAGAA A--------- (---Uaa-a) 841 ---------- UGACG|GU-A CUU-GAGGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGGG|GA UGCAAGCGUU AU-CCGGAAU UAUUGGGC|G 961 UAAAGGGUUC GUAGGUG|GU UUAACAAG-| UCU-GUUGUU AAAGGCUAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC UUAG-AA-AA GCAAU--GGA -AAC-U|GUU -AG-A-CUAG AG-UA|UGGU 1141 A-----GGGG CAAAG|GGAA UUCUCAG-UG UAGCG(GUGA AA)UGCGUAG AUA---UUGG 1201 GAAGAACACC AAA---AGC( GAAA)GC|A| CUUUG-CUG| GGCCA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- AACUGACACU 1321 |GAG-GAACG AAAGCUAGGG GAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|GG UG-UUGUACG ---------- --------(- 1441 ------uauu gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUACAG UACU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG AAGUACGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCG-U|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGUUUG ACA----UG| -UC-GCG--A A------UUU UCUU-----( 1741 GAA-A-)AAG AA-AAG---U G--CC----- ----(uucg- -----)---- -----GGAG- 1801 ---------- -----|CGCG AACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUG| UUUUUA-G-U 1921 UGCC-auca- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --uuaagu-- )-------ug 2101 |GGCACUCUA AAGAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUAAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUAUAUCC UGGGCUAC-A 2221 CACGUGCUAC AAUGGU--UA AGACAAUAGG UU----GCAA GCUU------ ---------- 2281 ----(----G UAA-)----- ---------- ----AAGU-A AGCUAAUC-C UUU-AAACUU 2341 AAUCUCAGUU CAGAUUGUAG GC(--UGCAA CUC)GCCUAC AUGAAGGUGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCUAU)AC GGCGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGGAGUCGG- CCAUGCCC-A 2521 AGUCGUU--- ACCUU-AACC -(---u-auu u------)-G G-AGG-GGG- AU-GCCG-AA 2581 nn-nnnnnUC GGUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGUGG 2641 UUGGAUCACC UCCUUG--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS (3)-Haptop 2717 bp RNA RNA 17-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 2717 others ORIGIN 1 |......... .......... ...-...... .......... .......... .......... 61 .......... .......... .....--.-. .......... ...------- ---------- 121 ---------- ---------- ---------. ......---- -----..... ...--...-- 181 ---------- -------... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......--. 301 ...------- --....---- ---------- ---....... .....---.. ....--.... 361 -......... .-...-..-. ---------- ---------- -------... ..-....... 421 ..------.. ........-- ----...... .......... ..-------- ---------- 481 .......... .-..-....- .......--. .......... .......... ........-. 541 ....-..... -......... .........- -......... .-...-.... .......... 601 ......---- -.-.....|. .......... ...|.....| ...--..... .......... 661 ......-... .......-.. |...-..... -.--....-- -......... .....-..-. 721 .......... -...------ ---------- ---------- ---------- ---------- 781 ---------- ----...... .....----- --........ ..-.....-. |..-----.. 841 .--------- ------.... ......-... .......... .........- .........- 901 --.....-.. ...---..-| ......|... .-........ ..-....... ........|. 961 .......... .......... ........-. |..-...... .......... .......... 1021 .......... .......... .......... .......... .......... ....------ 1081 ---...-..- .......-.| .....---.. ......-... -..-.----. .|-....... 1141 ..----.... .......... ....------ -......-.. ...------- ---------- 1201 ---------- ---------- |--------- ---------- ...-.--... .......... 1261 .......... .......... .......... .........- ---------- ....-..... 1321 -....|.... .......... .......... .....-.... .-------.. .|.--..... 1381 ...-...-.. ........-- --..-..... ..-..-.... .-.....--- ---------- 1441 --------.. ..---..... ....--.--. ....----.- -..--..--- ---------- 1501 ---------- ---------- ---------- --....---- --------.. .......... 1561 -....|.... ..|..-.... .......... .....-.... .......... .......... 1621 ......-... .......... ......-... .......... .......... .....----- 1681 -.-------. .......... ....---..| ...-...... .------... ......---. 1741 ...-...... ..-....... .......--- ----...--- ------.--- -----..... 1801 ..-------- -----..... .--.|..... ..---..... ..-------- --........ 1861 .....--.-- .--....... ...------- ---------. .-........ ......-... 1921 ....-..... .......-.- -......... .........- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------. .......--- ...--..... 2101 .......... ....|||... .......... ----..---- ---....... ...------. 2161 .......... .......... .......--. .......... .......... ........-. 2221 .......... .......-.. .......... ...---.... ....------ ---------- 2281 ----.----. ...-...... .......... .......... ........-. .......... 2341 .......... .......... ...--..... .......... .......... .......--- 2401 ---....... .......... -......... .......... ...-....-- ---------- 2461 -------... .......... .......... .......... .......... .......... 2521 .......--- .......... .......... .......... .-........ .......-.. 2581 ..-....... .......... .......... .......... .......... .......... 2641 .......... .......-.. .......... .......... .......... .......... 2701 .......... ......| // LOCUS chl.E.huxl 2717 bp RNA RNA 11-JAN-191 DEFINITION Emiliania huxleyi. ACCESSION No information KEYWORDS No information. SOURCE Emiliania huxleyi. ORGANISM Emiliania huxleyi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X82156 LOCUS E.huxley 1495 BP DEFINITION emiliania huxleyi 16s plastid BASE COUNT 395 a 319 c 431 g 338 t 1234 others ORIGIN 1 |--------- --CAAGCUUA GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCUU--A ACACAUGCAA GUCGAACG|A GA-------- --------gu u(uu------ 121 ---------- --u------- )aac------ ---------- ------UCU- AGU--GGCGA 181 ACGGGUGAGU AA-UACGUGA GA-AUCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GAAGAAUA ACUA------ ---------- --------CU G(GAAA)CGG 361 -UAGCUAAGU CU-UCAU-AU ---------- ---------- ---------- --------GC 421 C-------(g aga---)--- ----GGU--- ---GAAAU-- ---------- ---------- 481 AGU------- ------(--- -------UUC A------)-- -------|-- --ACUGCCUA 541 AGGA-UGA|G -CUCACGC|- CUGAUUA-GC UUGUUGG-UG -AG(G-UAAC GG)-CUUACC 601 AA|GGCCACG AU|CAGUAGC UG|GUUU(GA GA)GAACGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UC-CG)GG -A--GGCAG- CAGUGAGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-G-C U-GACGGA|G CAAUACCGCG UGAGGGAUGA AGGAU(---U 781 UUG--)GU-C U--GUAAACC UC|UUUU-CU CAAGAAAGAA G--------- (---UUC--) 841 ---------- UGACG|GU-A CUU-GAGGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGGG|GA UGCAAGCGUU AU-CCGGAAU CAUUGGGC|G 961 UAAAGCGCCU GUAGGUU|GU UUAGUAAG-| UCU-GUUGUU AAAGACCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CUGG-GA-AA GCAAU--GGA -AAC-U|ACU -AG-A-CUUG AG-UA|UGGC 1141 A-----GGGG UAGAG|GGAA UUUCUAG-UG UAGCG(GUGA AA)UGCGUAG AUA---UUAG 1201 AAAGAACACC GGC---GGC( GAAA)GC|G| CUCUA-CUG| GACCA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACACU 1321 |CAG-AGGCG AAAGCUAGGG GAGCAAAAGG G(AUU-A-GA UAC)-CCCUG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|GA UG-UUGCGC- ---------- --------(- 1441 -------aau uu---)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|--GUGCAG UAUC-UUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGCUC (GCAA)GGGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UA| -CU-ACA--A A------UCU UUUC-----( 1741 GAA-AC)GA- AA-GAG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|UGUA GAUA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCA| UUUUUA-G-U 1921 UGCC-AAU-- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --uuauu--- )--------G 2101 |GGAUUUCUA GAGAGACUGC CGGU(GACAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUAUGCCC UGGGCCAC-A 2221 CACGUGCUAC AAUGGC--GA AGACAAAGAG UC----GCAA ACCU------ ---------- 2281 ----(----G CGA-)----- ---------- ----AGGC-U AGCUAAUC-U CGU-AAACUU 2341 CGUCUAAGUU CGGAUUGUAG GC(--UGCAA CUC)GCCUGC AUGAAGUUGG AAUCGCU--- 2401 ---AGUAAU- CGCUGG(UC- -AGCUAU)AC AGCGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGGAGCUGG- UCAUACCCAA 2521 UAUCGUU--- aGCCU-AACC -(---a-uuc g------)-G G-AGG-GCG- GC-GCUU-AA 2581 GG-UAGGGCU AGUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUUU--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.Iso.sp 2717 bp RNA RNA 11-JAN-191 DEFINITION Isochrysis sp.. ACCESSION No information KEYWORDS No information. SOURCE Isochrysis sp. ORGANISM Isochrysis sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X75518 LOCUS PLPL16SR 1485 bp DNA PLN 08-JUN-1995 DEFINITION Isochrysis sp. plastid 16S rRNA gene. ACCESSION X75518 KEYWORDS 16S ribosomal RNA. SOURCE Isochrysis sp. ORGANISM Isochrysis sp. Eukaryota; Plantae; Thallobionta; Haptophyta; Prymnesiophyceae; Prymnesiophytes; Isochrysis. REFERENCE 1 (bases 1 to 1485) AUTHORS Huss,V.A.R. TITLE Direct Submission JOURNAL Submitted (02-NOV-1993) to the EMBL/GenBank/DDBJ databases. V. A. R. Huss, Inst fuer Botanik & Pharmazeutische, Biologie, Universitaet Erlangen, Staudtstr. 5, 91058 Erlangen, FRG REFERENCE 2 (bases 1 to 1485) AUTHORS Huss,V.A.R., Horn,G. and Engel,H. JOURNAL Unpublished COMMENT NCBI gi: 861084 FEATURES Location/Qualifiers source 1..1485 /organism="Isochrysis sp." /strain="SAG 927-2" /note="plastid" primer_bind 1..30 /note="PCR amplification 5'-primer" rRNA 1..1485 /product="16S small subunit ribosomal RNA" primer_bind complement(1463..1485) /note="PCR amplification 3'-primer" BASE COUNT 395 a 310 c 431 g 343 t 6 others ORIGIN BASE COUNT 395 a 310 c 431 g 343 t 1238 others ORIGIN 1 |--------- UGCCUGCAGA GAG-UU(Y-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCUU--A ACACAUGCAA GUCGAACG|A GA-------- --------gu u(uu------ 121 ---------- --u------- )aac------ ---------- ------UCU- AGU--GGCGA 181 ACGGGUGMGU AA-YACGUGA GA-AUCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --AAAGAAUA ACUG------ ---------- --------CU G(GAAA)CGG 361 -UAGCUAAGU CU-UUAU-AU ---------- ---------- ---------- --------GC 421 C-------(G AGA---)--- ----GGU--- ---GAAAU-- ---------- ---------- 481 AGU------- ------(--- -------uca u------)-- -------|-- --ACUGCCUA 541 AGGA-UGA|G -CUCACGC|- CUGAUUA-GC UUGUUGG-UA -AG(G-UAAU GG)-CUUACC 601 AA|GGCCACG AU|CAGUAGC UG|GUUU(GA GA)GAACGAM CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UC-CG)GG -A--GGCAG- CAGUGAGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUACCGCG UGAGGGAUGA AGUAU(---C 781 UUG--)GU-A U--GUAAACC UC|UUUU-CU CAAGAAAGAA G--------- (---UUc--) 841 ---------- UGAcG|GU-A CUU-GAGGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGGG|GA UGCAAGCGUU AU-UCGGAAU UAUUGGGC|G 961 UAAAGCGCCU GUAGGUU|GU UUAGUAAG-| UCC-GUUGUU AAAUACUAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CUGG-GA-AA GCAAU--AGA -AAC-U|ACU -AG-A-CUUG AG-UA|UGGC 1141 A-----GGGG UAGAG|GGAA UUUCUAG-UG UAGCG(GUGA AA)UGCGUAG AUA---UUAG 1201 AAAGAACACC GGC---GGC( GAAA)GC|G| CUCUA-CUG| GACCA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACACU 1321 |GAG-AGGCG AAAGCUAGGG UAGCAAAAGG G(AUU-A-GA UAC)-CCCUG UAG-|UC-CU 1381 A-GCCGUAAA CGGUGGAU-- --AC|UA|GG UG-UUGUGC- ---------- --------(- 1441 -------aaa uu---)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|--GUACAG UAUC-UUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGCUC (GCAA)GGGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UA| -CU-GCA--G A------UCU UCUA-----( 1741 GAA-A-)CAG AA-GAG---U A--CC----- ----(uucg- -----)---- -----GGAA- 1801 ---------- -----|UGUA GAUA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UUUUUA-G-U 1921 UGCC------ ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( aauuuauug- )--------- 2101 |GGUUUUCUA GAAAGACUGC CGGU(GACAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUAUGUCC UGGGCCAC-A 2221 CACGUGCUAC AAUGGC--GG AGACAAAGAG UC----GCAA ACCU------ ---------- 2281 ----(----G CGA-)----- ---------- ----AGGU-U AGCUAAUC-U -CAUAAACUU 2341 CGUCUAAGUU CGGAUUGUAG GC(--UGCAA CUC)GCCUGC AUGAAGUUGG AAUCGCU--- 2401 ---AGUAAU- CGCUGG(UC- -AGCUAU)AC AGCGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGGAGCUGG- UCAUACCCAA 2521 UAUCGUU--- AGUCU-AACC -(-----auu c------)-G G-GGG-ACG- GC-GCUU-AA 2581 GG-UAGGGCU AGUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGNGG 2641 NUGGAUCACC UCCUUG--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS pl.O.neapo 2717 bp RNA RNA 24-JAN-1997 DEFINITION Ochrosphaera neapolitana.. ACCESSION No information KEYWORDS No information. SOURCE Ochrosphaera neapolitana. ORGANISM Ochrosphaera neapolitana. REFERENCE 1 (bases 47701 to 48415) AUTHORS Huss,V.A.R., Tietze,A.C. and Julius,C. JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X99077 BASE COUNT 401 a 311 c 433 g 345 t 1227 others ORIGIN 1 |-uuauuuga auaccaugga GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCUU--A ACACAUGCAA GUCGGACG|A G--------- -------agu u(uu------ 121 ---------- --u------- )aacu----- ---------- ------YU-- AGU--GGCGA 181 ACGGGUGCGU AA-UACGUGA GA-AUCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GGGGAAUA ACUG------ ---------- --------UU G(GAAA)CGR 361 -CAGCUAAAU CC-CCAU-AU ---------- ---------- ---------- --------GC 421 C-------(g aga---)--- ----GGU--- ---GAAAA-- ---------- ---------- 481 AGU------- ------(--- -------uua c------)-- -------|-- --ACUGCCUA 541 AGGA-UGA|G -CUCGCGC|- CUGAUUA-GC UUGUUGG-UA -AG(G-UAAC GG)-CUUACC 601 AA|GGCCACG AU|CAGUAGC UG|GUUU(GA GA)GAAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UC-CG)GG -A--GGCAG- CAGUGAGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUACCGCG UGAGGGAUGA AGGAU(---U 781 UUG--)GU-C U--GUAAACC UC|UUUU-CU CAAGAAAGAA GU-------- (--------) 841 --------uc UGACG|GU-A CUU-GAGGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGGG|GA UGCAAGCGUU AU-CCGGAAU CAUUGGGC|G 961 UAAAGCGCCU GUAGGUU|GU CUAAUAAG-| UCU-GUUGUU AAAGACUAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CUGG-GA-AA GCGAU--GGA -AAC-U|AAU -AG-G-CUUG AG-UA|UGGU 1141 A-----GGGG UAGAG|GGAA UUUCUAG-UG UAGCG(GUGA AA)UGCGUAG AUA---UUAG 1201 AAAGAACACC GGU---GGC( GAAA)GC|G| CUCUA-CUG| GGCCA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACACU 1321 |GAG-AGGCG AAAGCUAGGG GAGCAAAAGG G(AUU-A-GA UAC)-CCCUG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|GG UG-UUGUA-- ---------- --------(- 1441 -------uua uug--)---- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- -|---UACAG UAUC-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGCUC (GCAA)GGGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UA| -CU-ACA--G A------UCU UUUU-----( 1741 GAG-A-)CGA AA-GAG---U G--CC----- ----(UUYG- -----)---- -----GGAA- 1801 ---------- -----|UGUA GAUA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UUUUUA-G-U 1921 UGCC------ ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( aauuuauug- )--------- 2101 |GGAUCUCUA GAGAGACUGC CGGU(GAUAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUAUGUCC UGGGCCAC-A 2221 CACGUGCUAC AAUGAC--AA AGACAAAGAG UC----GCAA AUUC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GAAC-U AGCUAAUC-U CAU-AAACUU 2341 UGUCCAAGUU CGGAUUGUAG GC(--UGCAA CUC)GCCUAC AUGAAGUUGG AAUCGCU--- 2401 ---AGUAAU- CGCUGG(UC- -AG-CAU)AC AGCGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGGAGCUGG- UCAUACCCAA 2521 CACCGUU--- AGUCU-AACC -(-----auu u------)-G G-AGG-ACG- AC-GUCU-AA 2581 GG-UAGGGCU AGUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUAUaa|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.Ochros 2717 bp RNA RNA 11-JAN-191 DEFINITION Ochrosphaera spec.. ACCESSION No information KEYWORDS No information. SOURCE Ochrosphaera spec. ORGANISM Ochrosphaera spec. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X65101 ID OSSSRRNA standard; DNA; ORG; 1483 BP. XX AC X65101; XX DT 08-APR-1992 (Rel. 31, Last updated, Version 1) DT 08-APR-1992 (Rel. 31, Created) XX DE O.spec. plastid DNA for 16S-like rRNA small subunit XX KW small subunit ribosomal RNA. XX OS Ochrosphaera spec. OC Eukaryota; Plantae; Thallobionta; Haptophyta; Prymnesiophyceae; OC Isochrysidales; Isochrysidaceae. XX OG Plastid XX RN [1] RP 1-1483 RA Huss V.A.; RT ; RL Submitted (19-MAR-1992) on tape to the EMBL Data Library by: RL V.A. Huss, Institut fuer Botanik und, Pharmazeutische Biologie, RL Universitaet Erlangen, Staudtstr.5, W-8520 Erlangen, FRG XX RN [2] RP 1-1483 RA Huss V.A.R., Hirsh E., Giovannoni S.J.; RT ; RL Unpublished. XX CC *source: strain=181; XX FH Key Location/Qualifiers FH FT misc_feature 1..30 FT /note="PCR amplification primer" FT rRNA 1..1483 FT /product="small subunit rRNA" FT misc_feature 1460..1483 FT /note="PCR amplification primer" XX SQ Sequence 1483 BP; 395 A; 311 C; 432 G; 341 T; 4 other; BASE COUNT 395 a 311 c 432 g 341 t 1238 others ORIGIN 1 |--------- UGCCUGCAGA GAG-UU(Y-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCUU--A ACACAUGCAA GUCGAACG|A G--------- -------agu u(uu------ 121 ---------- --u------- )aacu----- ---------- ------CU-- AGU--GGCGA 181 ACGGGUGCGU AA-UACGUGA GA-AUCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GGGGAAUA ACUG------ ---------- --------UU G(GAAA)CGA 361 -CAGCUAAAU CC-CCAU-AU ---------- ---------- ---------- --------GC 421 C-------(g aga---)--- ----GGU--- ---GAAAU-- ---------- ---------- 481 AGU------- ------(--- -------uua u------)-- -------|-- --ACUGCCUA 541 AGGA-UGA|G -CUCGCGC|- CUGAUUA-GC UUGUUGG-UA -AG(G-UAAU GG)-CUUACC 601 AA|GGCCACG AU|CAGUAGC UG|GUUU(GA GA)GAAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UC-CG)GG -A--GGCAG- CAGUGAGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUACCGCG UGAGGGAUGA AGGAU(---U 781 UUG--)GU-C U--GUAAACC UC|UUUU-CU CAAGAAAGAA GU-------- (--------) 841 --------uc UGACG|GU-A CUU-GAGGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGGG|GA UGCAAGCGUU AU-CCGGAAU CAUUGGGC|G 961 UAAAGCGCCU GUAGGUU|GU CUAAUAAG-| UCU-GUUGUU AAAGACUAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CUGG-GA-AA GCGAU--GGA -AAC-U|ACU -AG-G-CUUG AG-UA|UGGU 1141 A-----GGGG UAGAG|GGAA UUUCUAG-UG UAGCG(GUGA AA)UGCGUAG AUA---UUAG 1201 AAAGAACACC GGU---GGC( GAAA)GC|G| CUCUA-CUG| GGCCA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACACU 1321 |GAG-AGGCG AAAGCUAGGG GAGCAAAAGG G(AUU-A-GA UAC)-CCCUG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|GG UG-UUGUA-- ---------- --------(- 1441 -------uya uua--)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|---UACAG UAUC-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGCUC (GCAA)GGGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UA| -CU-ACA--A A------UCU UUUU-----( 1741 GAG-A-)CGA AA-GAG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|UGUA GAUA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UUUUUA-G-U 1921 UGCC------ ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( aauuuauug- )--------- 2101 |GGAUUUCUA GAGAGACUGC CGGU(GAUAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUAUGCCC UGGGCCAC-A 2221 CACGUGCUAC AAUGAC--AA AGACAAAGAG UC----GCAA AUUC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GAAC-U AGCUAAUC-U CAU-AAACUU 2341 UGUCCAAGUU CGGAUUGUAG GC(--UGCAA CUC)GCCUAC AUGAAGUUGG AAUCGCU--- 2401 ---AGUAAU- CGCUGG(UC- -AG-CAU)AC AGCGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGGAGCUGG- UCAUACCCAA 2521 CACCGUU--- AGUCU-AACC -(-----auu u------)-G G-AGG-ACG- GC-GUCU-AA 2581 GG-UAGGGCU AGUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGNGG 2641 NUGGAUCACC UCCUUG--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS (3)-Rhodop 2717 bp RNA RNA 17-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 2717 others ORIGIN 1 |......... .......... ...-...... .......... .......... .......... 61 .......... .......... .....--.-. .......... ...------- ---------- 121 ---------- ---------- ---------. ......---- -----..... ...--...-- 181 ---------- -------... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......--. 301 ...------- --....---- ---------- ---....... .....---.. ....--.... 361 -......... .-...-..-. ---------- ---------- -------... ..-....... 421 ..------.. ........-- ----...... .......... ..-------- ---------- 481 .......... .-..-....- .......--. .......... .......... ........-. 541 ....-..... -......... .........- -......... .-...-.... .......... 601 ......---- -.-.....|. .......... ...|.....| ...--..... .......... 661 ......-... .......-.. |...-..... -.--....-- -......... .....-..-. 721 .......... -...------ ---------- ---------- ---------- ---------- 781 ---------- ----...... .....----- --........ ..-.....-. |..-----.. 841 .--------- ------.... ......-... .......... .........- .........- 901 --.....-.. ...---..-| ......|... .-........ ..-....... ........|. 961 .......... .......... ........-. |..-...... .......... .......... 1021 .......... .......... .......... .......... .......... ....------ 1081 ---...-..- .......-.| .....---.. ......-... -..-.----. .|-....... 1141 ..----.... .......... ....------ -......-.. ...------- ---------- 1201 ---------- ---------- |--------- ---------- ...-.--... .......... 1261 .......... .......... .......... .........- ---------- ....-..... 1321 -....|.... .......... .......... .....-.... .-------.. .|.--..... 1381 ...-...-.. ........-- --..-..... ..-..-.... .-.....--- ---------- 1441 --------.. ..---..... ....--.--. ....----.- -..--..--- ---------- 1501 ---------- ---------- ---------- --....---- --------.. .......... 1561 -....|.... ..|..-.... .......... .....-.... .......... .......... 1621 ......-... .......... ......-... .......... .......... .....----- 1681 -.-------. .......... ....---..| ...-...... .------... ......---. 1741 ...-...... ..-....... .......--- ----...--- ------.--- -----..... 1801 ..-------- -----..... .--.|..... ..---..... ..-------- --........ 1861 .....--.-- .--....... ...------- ---------. .-........ ......-... 1921 ....-..... .......-.- -......... .........- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------. .......--- ...--..... 2101 .......... ....|||... .......... ----..---- ---....... ...------. 2161 .......... .......... .......--. .......... .......... ........-. 2221 .......... .......-.. .......... ...---.... ....------ ---------- 2281 ----.----. ...-...... .......... .......... ........-. .......... 2341 .......... .......... ...--..... .......... .......... .......--- 2401 ---....... .......... -......... .......... ...-....-- ---------- 2461 -------... .......... .......... .......... .......... .......... 2521 .......--- .......... .......... .......... .-........ .......-.. 2581 ..-....... .......... .......... .......... .......... .......... 2641 .......... .......-.. .......... .......... .......... .......... 2701 .......... ......| // LOCUS chl.P.pu.1 2717 bp RNA RNA 25-APR-1996 DEFINITION Chloroplast Porphyra purpurea.; . ACCESSION U38804 KEYWORDS . SOURCE Chloroplast Porphyra purpurea. ORGANISM Chloroplast Porphyra purpurea. REFERENCE 1 (bases 1 to 191028) AUTHORS Reith,M.E. and Munholland,J. TITLE Complete nucleotide sequence of the Porphyra purpurea chloroplast genome JOURNAL Plant Mol. Biol. Rep. 13 (4), 333-335 (1995) STANDARD No information REFERENCE 2 (bases 1 to 191028) AUTHORS Reith,M.E. TITLE Direct Submission JOURNAL Submitted (17-OCT-1995) Michael E. Reith, Marine Biology Section, NRC Institute for Marine Biosciences, 1411 Oxford Street, Halifax, Nova Scotia B3H 3Z1, Canada STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U38804 rRNA- 147766..149261 BASE COUNT 405 a 331 c 440 g 320 t 1221 others ORIGIN 1 |--------- AUACCACGGA GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCUU--A ACACAUGCAA GUCGAACG|A A--------- --------ag u(uu------ 121 ---------- --guaaaa-- )acu------ ---------- ------UU-- AGU--GGCGG 181 ACGGGUGAGU AA-CACGUGA GA-AUCUAC- CUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --AAGGCAUA ACAG------ ---------- --------UU G(GAAA)CGA 361 -CUGCUAAAG CC-UCAU-AU ---------- ---------- ---------- --------GC 421 U-------(g caa---)--- ----AGU--- ---GAAAA-- ---------- ---------- 481 AGA------- ------(--- -------GAA A------)-- -------|-- --UCUGCCUA 541 AAGA-UGA|G -CUCGCGC|- CUGAUUA-GC UAGUUGG-UA -AG(G-UAAC UG)-CUUACC 601 AA|GGCAACG AU|CAGUAGC UG|GUUU(GA GA)GGACGAC CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUACCGCG UGAGGGAUGA AGGCU(---C 781 GUG--)GG-U U--GUAAACC UC|UUUU-CU UAGGGAAGAA GA-------- (--------) 841 --------UC UGACG|GU-A CCU-AAAGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGAG|GA UGCAAGCGUU AU-CCGGAAU CACUGGGC|G 961 UAAAGCGUCU GUAGGUU|GC UUAAUAAG-| UCU-GCUGUU AAAGAUUGGG GC-------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CCAA-AG-CA GCAGU--GGA -AAC-U|GUU -AA-G-CUAG AG-UA|UGGU 1141 A-----AGGG UAAAG|GGAA UUCCCAG-UG UAGCG(GUGA AA)UGCGUAG AUA---UUGG 1201 GAAGAACACC AGA---GGC( GAAA)GC|G| CUUUA-CUA| GACCA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UGCUGACACU 1321 |CAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|GA UG-UUGCGCG ---------- --------(- 1441 ------uauu gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UAUC-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGACUUG ACA----UG| -UC-GCA--A A------UUU UCUU-----( 1741 GAA-A-)AAG GA-AAG---U G--CC----- ----(UUAG- -----)---- -----GGAA- 1801 ---------- -----|UGCG AACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUG| UCUUUA-G-U 1921 UGCCA-UCA- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --uuuagu-- )-------UG 2101 |GGCACUCUA AAGAGACUGC CGGU(GACAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUAUGUCC UGGGCUAC-A 2221 CACGUGCUAC AAUGGU--CG CGACAAAGAG UU----GCAA ACUU------ ---------- 2281 ----(----G CAA-)----- ---------- ----AAGC-U AGCUAAUC-U CGU-AAACGC 2341 GGCCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGGUGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCUAC)AC GGCGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGGAGCUGG- CCACGCCCGA 2521 AGUCGUU--- ACCCU-AACC -(-----uuu u------)-G G-AGG-GGG- GC-GCCU-AA 2581 GG-UAGGGCU AGUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUUU--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.P.pu.A 2717 bp RNA RNA 11-JAN-191 DEFINITION Chloroplast Porphyra purpurea. ACCESSION No information KEYWORDS No information. SOURCE Chloroplast Porphyra purpurea. ORGANISM Chloroplast Porphyra purpurea. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: L07257 LOCUS PTERGA 817 bp ds-DNA PLN 26-OCT-1993 DEFINITION Porphyra purpurea chloroplast 16S ribosomal RNA gene, 5' end. ACCESSION L07257 KEYWORDS 16S ribosomal RNA; ribosomal RNA operon; rrnA operon. SOURCE Chloroplast Porphyra purpurea (organelle Chloroplast Porphyra purpurea) DNA. ORGANISM Chloroplast Porphyra purpurea Eukaryota; Rhodophycota; Rhodophyceae; Bangiophycideae; Bangiales; Bangiaceae. REFERENCE 1 (bases 1 to 817) AUTHORS Reith,M.E. and Munholland,J.M. TITLE The Ribosomal RNA repeats are non-identical and directly oriented in the chloroplast genome of the red alga, Porphyra purpurea JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers promoter 78..83 /citation=[1] /note="putative" promoter 101..106 /citation=[1] /note="putative" repeat_region 179..>817 /function="ribosomal RNA operon" /rpt_type=DIRECT /evidence=EXPERIMENTAL /citation=[1] rRNA 186..>817 /product="16S ribosomal RNA" /gene="16S rRNA" /citation=[1] /note="The two copies of the 16S rRNA genes of Porphyra purpurea differ at seven positions.; putative" misc_difference replace(267,"g") /citation=[1] /note="one of seven known differences between the two copies of the 16S rRNA genes of the P.purpurea chloroplast genome" misc_difference replace(351,"t") /citation=[1] /note="one of seven differences between the two copies of the 16S rRNA genes of the P. purpurea chloroplast genome" misc_difference replace(385,"g") /citation=[1] /note="one of seven differences between the two copies of the 16S rRNA genes of the P. purpurea chloroplast genome" misc_difference replace(580,"c") /citation=[1] /note="one of seven differences between the two copies of the 16S rRNA genes of the P. purpurea chloroplast genome" misc_difference replace(631,"g") /citation=[1] /note="one of seven differences between the two copies of the 16S rRNA genes of the P. purpurea chloroplast genome" misc_difference replace(655,"a") /citation=[1] /note="one of seven differences between the two copies of the 16S rRNA genes of the P. purpurea chloroplast genome" misc_difference replace(758,"c") /citation=[1] /note="one of seven differences between the two copies of the 16S rRNA genes of the P. purpurea chloroplast genome" source 1..817 /organism="Porphyra purpurea" /chloroplast BASE COUNT 254 a 145 c 208 g 210 t ORIGIN BASE COUNT 188 a 127 c 186 g 137 t 2079 others ORIGIN 1 |---uacugg aUACCACGGA GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCUU--A ACACAUGCAA GUCGAACG|A A--------- ------aguu u(gu------ 121 ---------- --aa------ )aaacu---- ---------- ------UU-- AGU--GGCGG 181 ACGGGUGAGU AA-CACGUGA GA-AUCUAC- CUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --AAGGCAUA ACAG------ ---------- --------UU G(GAAA)CGA 361 -CUGCUAAAG CC-UCAU-AU ---------- ---------- ---------- --------GC 421 U-------(G CAA---)--- ----AGU--- ---GAAAA-- ---------- ---------- 481 aga------- ------(--- -------gaa a------)-- -------|-- --UCUGCCUA 541 AAGA-UGA|G -CUCGCGC|- CUGAUUA-GC UAGUUGG-UA -AG(G-UAAC UG)-CUUACC 601 AA|GGCAACG AU|CAGUAGC UG|GUUU(GA GA)GGACGAC CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUACCGCG UGAGGGAUGA AGGCU(---C 781 GUG--)GG-U U--GUAAACC UC|UUUU-CU UAGGGAAGAA GA-------- (--------) 841 --------UC UGACG|GU-A CCU-AAAGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGAG|GA UGCAAGCGUU AU-CCGGAAU CACUGGGC|G 961 UAAAGCGUCU GUAGGUU|GC UUAAUAAG-| UCU-GCUGUU AAAGAUUGGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CCAA-ag-cA GCAGU--GGA -AAC-U|GUU -AA-G-CUAG AG-UA|UGGU 1141 A-----AGGG UAAAG|GGAA UUC~~~~~~~ ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~( ~~~~)~~|~| ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~-~~ ~~~)-~~~~~ ~~~-|~~-~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(- 1441 ------~~~~ ~~~~-)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- 1501 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ (~~~~)~~~~ 1561 ~~~~~~~~~~ |~|~~~~~~~ ~~~~~~~~~~ (~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~-~~ ~~~------- ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~-(~ ~~~~~~~)~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~--~ ~~----~~~~ ~~~~-----( 1741 ~~~~~-)~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~(~~~~~ -----)~~~~ ~~~~~~~~~- 1801 ---------- ---~-|~~~~ ~~~~|~|~~~ ~~~~~~~~~| ~~~|~~~~~~ ~|-~~~~~~~ 1861 |~~~(~~~~) ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ---------~ 1981 ---------~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ )~~~~--~~~ 2101 |~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)----- ---~~----~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- 2281 ~--~(--~~~ ~~~-)~~~~~ ~~~~~~~~-- ----~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~--~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~-~~~ ~~~~~~~)~~ ~~~~~-~~~- ~~-~~~~-~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.P.pu.B 2717 bp RNA RNA 11-JAN-191 DEFINITION Chloroplast Porphyra purpurea. ACCESSION No information KEYWORDS No information. SOURCE Chloroplast Porphyra purpurea. ORGANISM Chloroplast Porphyra purpurea. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: L07258 LOCUS PTERGB 826 bp ds-DNA PLN 26-OCT-1993 DEFINITION Porphyra purpurea chloroplast 16S ribosomal RNA gene, 5' end. ACCESSION L07258 KEYWORDS 16S ribosomal DNA; ribosomal RNA operon; rrnB operon. SOURCE Chloroplast Porphyra purpurea (organelle Chloroplast Porphyra purpurea) DNA. ORGANISM Chloroplast Porphyra purpurea Eukaryota; Rhodophycota; Rhodophyceae; Bangiophycideae; Bangiales; Bangiaceae. REFERENCE 1 (bases 1 to 826) AUTHORS Reith,M.E. and Munholland,J.M. TITLE The Ribosomal RNA repeats are non-identical and directly oriented in the chloroplast genome of the red alga, Porphyra purpurea JOURNAL Unpublished (1993) STANDARD full automatic FEATURES Location/Qualifiers promoter 79..84 /citation=[1] /note="putative" promoter 103..108 /citation=[1] /note="putative" repeat_region 188..>826 /function="ribosomal RNA operon" /rpt_type=DIRECT /evidence=EXPERIMENTAL /citation=[1] rRNA 195..>826 /product="16S ribosomal RNA" /gene="16S rRNA" /citation=[1] /note="The two copies of the 16S rRNA genes of Porphyra purpurea differ at seven positions.; putative" misc_difference replace(276,"a") /citation=[1] /note="one of seven known differences between the two copies of the 16S rRNA genes of the P. purpurea chloroplast genome" misc_difference replace(360,"c") /citation=[1] /note="one of seven differences between the two copies of the 16S rRNA genes of the P. purpurea chloroplast genome" misc_difference replace(394,"a") /citation=[1] /note="one of seven differences between the two copies of the 16S rRNA genes of the P. purpurea chloroplast genome" misc_difference replace(589,"t") /citation=[1] /note="one of seven differences between the two copies of the 16S rRNA genes of the P. purpurea chloroplast genome" misc_difference replace(640,"a") /citation=[1] /note="one of seven differences between the two copies of the 16S rRNA genes of the P. purpurea chloroplast genome" misc_difference replace(664,"g") /citation=[1] /note="one of seven differences between the two copies of the 16S rRNA genes of the P. purpurea chloroplast genome" misc_difference replace(767,"t") /citation=[1] /note="one of seven differences between the two copies of the 16S rRNA genes of the P. purpurea chloroplast genome" source 1..826 /organism="Porphyra purpurea" /chloroplast BASE COUNT 262 a 144 c 205 g 215 t ORIGIN BASE COUNT 187 a 128 c 187 g 136 t 2079 others ORIGIN 1 |---uacugg aUACCACGGA GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCUU--A ACACAUGCAA GUCGAACG|A A--------- ------aguu u(gu------ 121 ---------- --aa------ )gaacu---- ---------- ------UU-- AGU--GGCGG 181 ACGGGUGAGU AA-CACGUGA GA-AUCUAC- CUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --AAGGCAUA ACAG------ ---------- --------UU G(GAAA)CGA 361 -CUGCUAAAG CC-UUAU-AU ---------- ---------- ---------- --------GC 421 U-------(G CAA---)--- ----AGU--- ---GAAAA-- ---------- ---------- 481 aga------- ------(--- -------gaa a------)-- -------|-- --UCUGCCUG 541 AAGA-UGA|G -CUCGCGC|- CUGAUUA-GC UAGUUGG-UA -AG(G-UAAC UG)-CUUACC 601 AA|GGCAACG AU|CAGUAGC UG|GUUU(GA GA)GGACGAC CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUACCGCG UGAGGGAUGA AGGCC(---C 781 GUG--)GG-U U--GUAAACC UC|UUUU-CU UAGGGAAGAA GA-------- (--------) 841 --------UC UGACG|GU-A CCU-AAGGAA -UAAGCAUC| GGCU-AACU- CCGUA(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGAG|AA UGCAAGCGUU AU-CCGGAAU CACUGGGC|G 961 UAAAGCGUCU GUAGGUU|GC UUAAUAAG-| UCU-GCUGUU AAAGAUUGGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CCAA-AG-ca GCAGU--GGA -AAC-U|GUU -AA-G-CUAG AG-UA|UGGU 1141 A-----AGGG UAAAG|GGAA UUC~~~~~~~ ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~( ~~~~)~~|~| ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~-~~ ~~~)-~~~~~ ~~~-|~~-~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(- 1441 ------~~~~ ~~~~-)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- 1501 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ (~~~~)~~~~ 1561 ~~~~~~~~~~ |~|~~~~~~~ ~~~~~~~~~~ (~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~-~~ ~~~------- ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~-(~ ~~~~~~~)~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~--~ ~~----~~~~ ~~~~-----( 1741 ~~~~~-)~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~(~~~~~ -----)~~~~ ~~~~~~~~~- 1801 ---------- ---~-|~~~~ ~~~~|~|~~~ ~~~~~~~~~| ~~~|~~~~~~ ~|-~~~~~~~ 1861 |~~~(~~~~) ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ---------~ 1981 ---------~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ )~~~~--~~~ 2101 |~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)----- ---~~----~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- 2281 ~--~(--~~~ ~~~-)~~~~~ ~~~~~~~~-- ----~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~--~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~-~~~ ~~~~~~~)~~ ~~~~~-~~~- ~~-~~~~-~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.C.cald 2717 bp RNA RNA 11-JAN-191 DEFINITION Cyanidium caldarium. ACCESSION No information KEYWORDS No information. SOURCE Cyanidium caldarium. ORGANISM Cyanidium caldarium. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X52985 ID CHCC16S standard; DNA; PLN; 1492 BP. XX AC X52985; XX DT 16-JUL-1990 (annotation) XX DE C. caldarium plastid gene for 16S rRNA XX KW 16S ribosomal RNA; ribosomal RNA. XX OS Cyanidium caldarium OC Eukaryota; Planta; Phycophyta. XX RN [1] (bases 1-1492) RA Maid U.; RT ; RL Submitted (08-MAY-1990) on tape to the EMBL Data Library by: RL Maid U., Institut fuer Pflanzenphysiologie, Heinrich-Buff-Ring 58, RL D-6300 Giessen, FRG. XX RN [2] (bases 1-1492) RA Maid U., Zetsche K.; RT "Nucleotide sequence of the plastid 16S rRNA of the red alga RT Cyanidium caldarium"; RL Nucleic Acids Res. 18:3996-3996(1990). XX CC *source: strain=14-1-1; XX FH Key From To Description FH FT RRNA 1 1492 16S rRNA XX SQ Sequence 1492 BP; 420 A; 300 C; 422 G; 350 T; 0 other; BASE COUNT 420 a 300 c 422 g 350 t 1225 others ORIGIN 1 |~~~~~~~~~ ~UAUAAUGGA GAG-UU(U-G A)UCCU|GGC UCAGGAUUAA CGC-UGGCGG 61 UAUGCCU--A ACACAUGCAA GUCGUACG|A G--------- --------aa u(uu------ 121 ---------- --u------- )auu------ ---------- ------CU-- AGU--GGCGG 181 ACGGGUGAGU AA-CACGUGA GA-AUCUAC- CUCU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GGGGGAUA ACAG------ ---------- --------UU G(GAAA)CGA 361 -UUGCUAAAA CC-CCAU-AU ---------- ---------- ---------- --------GC 421 CA------(u uau---)--- ---UGGU--- ---GAAAA-- ---------- ---------- 481 aga------- ------(--- -------uuu a------)-- -------|-- --UCUGCCUG 541 GAGA-UGA|G -CUCGCGG|- CUGAUUA-GC UAGUUGG-UA -GG(G-UAAU GG)-CUUACC 601 AA|GGCAACG AU|CAGUAGC UG|GUCU(UA GA)GGAUGAU CAGC|CACAC UGGAA(CUGA 661 GAUACG)GUC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCA-C 721 AAU-GGGC-( -GAAA)-GCC U-GAUGGA|G CAAUACCGUG UGAGGGAUGA AGGCC(---U 781 GUG--)GG-U U--GUAAACC UC|UUUU-UU CAGGAAAGAA AC-------- (--------) 841 --------UU UGACG|GU-A CCU-GAAGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGAG|GA UGCAAGCGUU AU-CCGGAAU CACUGGGC|G 961 UAAAGCGUCU GUAGGUG|GU UUAUCAAG-| UCU-GCUGUU AAAGCUUGAG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC UCAA-AA-AA GCAGU--GGA -AAC-U|GAU -AG-A-CUAG AG-AA|UGGU 1141 A-----GGGG CAGAG|AGAA UUCUCAG-UG UAGCG(GUGA AA)UGCGUAG AUA---UUGA 1201 GAAGAAUACC GAU---AGC( GAAG)GC|G| CUCUG-CUG| GGCCA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACACU 1321 |CAG-AGACG AAAGCUAGGG GAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CUAUGGAU-- --AC|UA|GA UG-UUGugug a--------- --------(- 1441 -------gua aaa--)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|uuguGCAG UAUC-GAAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG AAGUACGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGACCC-GC ACA------- AGCG-U|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGACUUG ACA----UG| -UU-ACU--A A------UUU CCUU-----( 1741 GAA-A-)GAG GA-AAG---U G--CC----- ----(UUUG- -----)---- -----GGAA- 1801 ---------- -----|AGUA AACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUG| UCUUUA-G-U 1921 UACCA-UCA- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --uuaagu-- )-------UG 2101 |GGGACUCUA AAGAGACUGC CGGU(GAUAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GUAAGGAUGA GGUC-AA--G UCAUCAUGCC CCUUAUGUCC UGGGCUAC-A 2221 CACGUGCUAC AAUGGU--UA GGACAAUAAG UC----GCAA AUUC------ ---------- 2281 ----(----G UGA-)----- ---------- ----GAAC-U AGCUAAUC-U UAU-AAACCU 2341 AAUCUCAGUA CGGAUUGUAG GC(--UGCAA CUC)GCCUAC AUGAAGACGG AAUCGCU--- 2401 ---AGUAAU- CGCUGG(UC- -AGCUAC)AC AGCGGUGAAU AC--GUU--- ---------- 2461 -------CCC GGGUCUUGUA CACACCGCCC GUCACACCAU GGGAGCUGG- CCAUGUCCGA 2521 AAUCAUU--- ACUCU-AACC -(---u-uaa u------)-G G-AGG-AGG- AU-GCUU-AA 2581 GG-CAGGGCU AGUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUUACC UCCUUU--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS Chl.Cya.ca 2717 bp RNA RNA 07-OCT-1997 DEFINITION Chloroplast Cyanidium caldarium.; . ACCESSION AF022186 KEYWORDS . SOURCE Chloroplast Cyanidium caldarium. ORGANISM Chloroplast Cyanidium caldarium. REFERENCE 1 (bases 1 to 46880) AUTHORS Gloeckner,G., Rosenthal,A. and Valentin,K. TITLE Organisation of 46 kb of the Cyanidium caldarium RK1 plastid genome JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 46880) AUTHORS Gloeckner,G., Rosenthal,A. and Valentin,K. TITLE Direct Submission JOURNAL Submitted (02-SEP-1997) Department of genome analysis, IMB Jena, Beutenbergstr. 11, Jena 07745, Germany STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: AF022186 BASE COUNT 442 a 300 c 409 g 376 t 1190 others ORIGIN 1 |--------- AUAUUAUUGA GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCUU--A ACACAUGCAA GUCGUACG|A A--------- --------aa c(uu------ 121 ---------- --uaau---- )guu------ ---------- ------UU-- AGU--GGCGA 181 ACGGGUGAGU AA-CACGUGA GA-AUUUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --AGAGAAUA ACGA------ ---------- --------UU G(GAAA)CGA 361 -UCGCUAAUA CU-CUAU-AU ---------- ---------- ---------- --------CU 421 CUAAGU--(u uua---)--A UUUAGAU--- ---GAAAAag auuagauuug uacauugugu 481 agau------ ------(--- --------uu a------)-- -------|-- -AUCUGCCUA 541 AGGA-GAA|G -CUCGCGG|- CUGAUUA-GC UAGUUGG-UA -AG(G-UAAA UG)-CUUACC 601 AA|GGCUAUG AU|CAGUAGC UG|GUCU(AA GA)GGACGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCUG-C 721 AAU-GGGC-( -GCAA)-GCC U-GACAGA|G CAAUACCGCG UGAAGGAAGA AGGCC(---U 781 UAG--)GG-U U--GUAAACU UC|UUUU-GU UAGGGAAGAA AU-------- (--------) 841 --------UU UGACG|GU-A CCU-AAAGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGGG|GA UGCAAGCGUU AU-CCGGAAU UAUUGGGC|G 961 UAAAGCGUUU GUAGGUG|GU UUAGCAAG-| UCU-GUUGUU AAAUCUUGAG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACU UCAA-AC-AA GCAAG--AGA -AAC-U|GCU -AG-A-CUAG AG-UG|UGGU 1141 G-----GAGG CAGAG|GGAA UUUCCAG-UG UAGCG(GUGA AA)UGCGUAG AUA---UUGG 1201 AAAGAACACC AGA---AGC( GAAA)GC|G| CUUUG-CUA| UACCA--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- AACUGACACU 1321 |GAG-AAACG AAAGCUAGGG GAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCUGUAAA CUAUGGAU-- --AC|UA|GA UG-UUGCGUA A--------- --------(- 1441 --------aa ga---)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|UUAUGCAG UGUC-AUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG AAGUACGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAAAGCUUG ACA----UG| -UU-GCG--A A------UUU CUU------( 1741 uaa-uc)-AA GA-AAG---U A--CC----- ----(UUUU- -----)---- -----GGAA- 1801 ---------- -----|CGCA AACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUG| UUUUUA-G-U 1921 UGCCA-CCA- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --uuaagu-- )-------UG 2101 |GGAACUUUA AAAAGACUGC CAGU(GACAA ----)----- ---------- ---------G 2161 CUGGAGGAAG GUGAGGACGA CGUC-AA--G UCAUCAUGCC CCUUAUGCUU UGGGCUAC-A 2221 CACGUGCUAC AAUGAC--UA AGACAACGAG UC----GCAA AGUU------ ---------- 2281 ----(----G UGA-)----- ---------- ----AACC-U AGCUAAUC-U CUU-AAACUU 2341 AGUCUCAGUU CAGAUUGUAG GC(--UGAAA CUC)GCCUAC AUGAAGACGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAC)AC GGCGGUGAAU UU--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGAAGCUGA- UUGUGCCCGA 2521 AGUCGUU--u uuucu---cc a(---u-aac aa-----)ug g-uag-uAA- GC-GCCU-AA 2581 GG-CAAAAUU AGUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUUACC UCCUUU--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.Ant.sp 2717 bp RNA RNA 11-JAN-191 DEFINITION Antithamnion sp. ACCESSION No information KEYWORDS No information. SOURCE Antithamnion sp. ORGANISM Antithamnion sp. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X54299 LOCUS ANTCPASSPA 2099 bp ds-DNA ORG 31-JUL-1991 DEFINITION Antithamnion sp. plastid DNA for 16S rRNA/23S rRNA spacer region and tRNA-Ile and tRNA-Ala genes ACCESSION X54299 KEYWORDS 16S ribosomal RNA; 23S ribosomal RNA; intergenic spacer; spacer DNA; transfer RNA; transfer RNA-Ala; transfer RNA-Ile. SOURCE Chloroplast Antithamnion sp. DNA. ORGANISM Chloroplast Antithamnion sp. Eukaryota; Fungi; Rhodophycota; Rhodophyceae; Bangiophycideae; Bangiales; Bangiaceae. REFERENCE 1 (bases 1 to 2099; 1739 to 2042) AUTHORS Maid,U. and Zetsche,K. TITLE Structural features of the plastid ribosomal RNA operons of two red algae:Antithamnion sp. and Cyanidium caldarium JOURNAL Plant Mol. Biol. 16, 537-546 (1991) STANDARD full automatic COMMENT See also X54300 From EMBL entry CHASSPAC; dated 03-JUL-1991. FEATURES Location/Qualifiers rRNA 254..1739 /product="16S ribosomal RNA" /gene="16S rRNA" misc_feature 1740..1793 /note="spacer region I" tRNA 1794..1867 /product="transfer RNA-Ile" /gene="tRNA-Ile" misc_feature 1868..1874 /note="spacer region II" tRNA 1875..1947 /product="transfer RNA-Ala" /gene="tRNA-Ala" misc_feature 1948..2043 /note="spacer region III" rRNA 2044..>2099 /product="23S ribosomal RNA" /gene="23S rRNA" BASE COUNT 617 a 379 c 519 g 584 t ORIGIN BASE COUNT 416 a 302 c 412 g 356 t 1231 others ORIGIN 1 |~~~~~~~~~ ~~ACUACGGA GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCCU--A ACACAUGCAA GUUGAACG|A A--------- --------ag c(uu------ 121 ---------- --cg------ )gcu------ ---------- ------UU-- AGU--AGCGG 181 ACGGGUGAGU AA-UACAUGA GA-AUCUGC- AUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GGGGAAUA ACAA------ ---------- --------UU G(GAAA)CGA 361 -UUGCUAAUG CC-CCAU-AU ---------- ---------- ---------- --------GC 421 U-------(U UAG---)--- ----AGU--- ---GAAAU-- ---------- ---------- 481 GA-------- ------(--- -------uuu u------)-- -------|-- ---UCGCCUG 541 AAUA-UGA|G -CUCAUGC|- CUGAUUA-GC UAGUUGG-UA -GG(G-UAAA GG)-CCUACC 601 AA|GGCGACG AU|CAGUAGC UG|GUUU(GA GA)GGAUGAU CAGC|CACAC UGGAA(CUGA 661 GACACG)GUC CAGA-C--UU C(UA-CG)GA -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-G-C U-GACGGA|G CAAUACCGCG UGAGGGAUGA AUGCC(---U 781 AUG--)GG-U U--GUAAACC UC|UUUU-AU UAGGGAAGAA UU-------- (--------) 841 ---------A UGACG|GU-A CCU-AAUGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGGG|GA UGCAAGCGUU AU-CCGGAAU CAUUGGGC|G 961 UAAAGAGUCU GUAGGUU|GC UUAAUAAG-| UCU-GCUGUU AAAUAUUAGA GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACU UUAA-GC-AA GCAGU--AGA -AAC-U|AUU -AA-G-CUAG AG-UA|UGAU 1141 A-----GGGG UAGAG|GGAA UUCCCAG-UG UAGCG(GUGA AA)UGCGUAG AUA---UUGG 1201 GAAGAACACC AGA---AGC( GAAA)-C|G| CUCUA-CUG| GGCCA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACACU 1321 |GAG-AGACG AAAGCUAGGG GAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|GA UG-UUGCACG ---------- --------(- 1441 ------uauc gauc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UAUC-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG AAGUACGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGCCCC-GC ACA------- AGCG-U|GGA GCAUGUGGUU UAAUUCG-(A UGCAACA)CG 1681 AAGAACCUUA CCAGAACUUG ACA----UA| -UC-GCA--A A------UUU UUAU-----( 1741 GAG-A-)AUA AA-AAG---U G--CU----- ----(UUCG- -----)---- -----AGAA- 1801 ---------- -----|UGCG AAUA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUG| UUUUUA-U-U 1921 UGCCA-UCA- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --uuuagu-- )-------UG 2101 |GGUACUUUA AAAAGACUGC CGGU(GACAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUAUGUUC UGGGCUAC-A 2221 CACGUGCUAC AAUGGU--UA UGACAAAAAG UC----GCAA ACUU------ ---------- 2281 ----(----G UGA-)----- ---------- ----AAGU-A AGCUAAUC-U UAU-AAACAU 2341 AGCCUCAGUU CGGAUUGCAG GC(--UGAAA CUC)GCCUGC AUGAAGGUGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCUAU)AC GGCGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGGAGCUGG- CCAUGCCCAA 2521 AGUUGUU--- ACCCU-AUCC -(---u-uuu ua-----)-- G-AGG-GGU- UC-ACCU-AA 2581 GG-UUGGGCU AGUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUUAU-|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.C.cris 2717 bp RNA RNA 11-JAN-191 DEFINITION Chloroplast Chondrus crispus. ACCESSION No information KEYWORDS No information. SOURCE Chloroplast Chondrus crispus. ORGANISM Chloroplast Chondrus crispus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: Z29521 LOCUS CHCC16SRR 2052 bp DNA PLN 15-DEC-1994 DEFINITION C.crispus Chloroplast gene encoding 16S rRNA, tRNA-Ile, tRNA-Ala, and 23S rRNA (partial). ACCESSION Z29521 KEYWORDS 16S ribosomal RNA; 23S ribosomal RNA; transfer RNA-Ala; transfer RNA-Ile. SOURCE carragheen. ORGANISM Chloroplast Chondrus crispus Eukaryota; Plantae; Thallobionta; Rhodophyta; Rhodophyceae; Florideophycideae; Gigartinales; Gigartinaceae. REFERENCE 1 (bases 1 to 2052) AUTHORS Leblanc,C., Boyen,C. and Loiseaux-de Goer,S. TITLE Sequence and phylogeny of the plastidial 16s rRNA gene from the red alga Chondrus crispus JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 2052) AUTHORS Leblanc,C. TITLE Direct Submission JOURNAL Submitted (19-JAN-1994) to the EMBL/GenBank/DDBJ databases. Catherine Leblanc, CNRS Centre d'etudes d'oceanologie et de biologie marine, Place Georges Teissier, ROSCOFF, 29 682 CEDEX, FRANCE STANDARD full automatic COMMENT NCBI gi: 602525 FEATURES Location/Qualifiers source 1..2052 /organism="Chondrus crispus" /chloroplast /tissue_type="APICES" /cell_type="PROTOPLAST" -35_signal 22..27 -10_signal 46..51 rRNA 135..1625 /gene="16S rRNA" /product="16S ribosomal RNA" tRNA 1689..1762 /gene="tRNA-Ile" /note="gat anticodon" /product="transfer RNA-Ile" tRNA 1776..1848 /gene="tRNA-Ala" /note="tgc anticodon" /product="transfer RNA-Ala" rRNA 1902..>2052 /gene="23S rRNA" /product="23S ribosomal RNA" BASE COUNT 606 a 397 c 539 g 510 t ORIGIN BASE COUNT 418 a 310 c 422 g 341 t 1226 others ORIGIN 1 |--------- AUACAACGGA GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCCU--A ACACAUGCAA GUUGAACG|A A--------- --------ag u(ua------ 121 ---------- --au------ )gcu------ ---------- ------UU-- AGU--AGCGG 181 ACGGGUGAGU AA-UACAUAA GA-AUCUGC- CUUG------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GGGGAAUA ACAA------ ---------- --------UU G(GAAA)CGA 361 -UUGCUAAUG CC-CCAU-AU ---------- ---------- ---------- --------GC 421 C-------(u ucag--)--- ----aGU--- ---GAAAC-- ---------- ---------- 481 AGA------- ------(--- -------GAA A------)-- -------|-- --UCUGCCUU 541 AAGA-UGA|G -CUUAUGC|- CUGAUUA-GC UAGUUGG-UA -AA(U-UAAA AG)-CUUACC 601 AA|GGCGACG AU|CAGUAGC UG|GUUU(GA GA)GGAUGAU CAGC|CACAC UGGAA(CUGA 661 GACACG)GUC CAGA-C--UU C(UA-CG)GA -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GC- U-GACGGA|G CAAUACCGCG UGAGGGAAGA AUGCC(---U 781 GUG--)GG-U U--GUAAACC UC|UUUU-AU CAGGAAAGAA GU-------- (--------) 841 --------UA UGACG|GU-A CCU-GAUGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGGG|GA UGCAAGUGUU AU-CCGGAAU CACUGGGC|G 961 UAAAGCGUCU GUAGGUG|GU UUAGUAAG-| UCU-GUUGUU AAAUAUUGGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC UUAA-GC-AA GCAAU--GGA -AAC-U|ACU -AG-A-CUAG AG-UA|UGGU 1141 A-----UGGG UAAAG|GGAA UUCCCAG-UG UAGCG(GUGA AA)UGCGUAG AUA---UUGG 1201 GAAGAACACC AGC---AGC( GAAA)-C|G| CUUUA-CUA| GGCUA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |CAG-AGACG AAAGCUAGGG UAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCUGUAAA CGAUGGAU-- --AC|UA|GA UG-UUGCGCG ---------- --------(- 1441 ------uauc gauc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UAUC-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG AAGUACGCUC (GCAA)GGAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACA)CG 1681 AAGAACCUUA CCAGUGCGUG ACA----UG| -UC-ACG--A A------UUU UUAC-----( 1741 GAA-A-)UUA AA-AG----U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGUG AACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUG| UUUUUA-G-U 1921 UGCCA-UCA- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --uuuagu-- )-------UG 2101 |GGCACUCUA AAGAGACUGC CGGU(GACAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUAAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUAAGCUC UGGGCUAC-A 2221 CACGUGCUAC AAUGGU--UG UGACAAAGAG UC----GCAA AUCU------ ---------- 2281 ----(----G UGA-)----- ---------- ----AGAU-A AGCUAAUC-U CAU-AAACGC 2341 AGCCUCAGUU CGGAUUGUAG GC(--UGAAA CUC)GCCUAC AUGAAGGUGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCUAU)AC GGCGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGAAGCUGG- CUAUACCCGA 2521 AGUCGUU--- ACUCC-AACC -(--uu-uau gga----)-G G-AGG-GCG- CC-UAAG-G- 2581 ---UAGAGCU AGUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUUA--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.P.palm 2717 bp RNA RNA 11-JAN-191 DEFINITION Palmaria palmata. ACCESSION No information KEYWORDS No information. SOURCE Palmaria palmata. ORGANISM Palmaria palmata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: Z18289 ID PPC16SRNA standard; RNA; PLN; 4870 BP. XX AC Z18289; XX DT 18-JAN-1993 (Rel. 34, Created) DT 18-JAN-1993 (Rel. 34, Last updated, Version 2) XX DE Palmaria palmata Chloroplast for 16SrRNA gene. XX KW 16S ribosomal RNA. XX OS Palmaria palmata OC Eukaryota; Plantae; Thallobionta; Rhodophyta; Rhodophyceae; OC Florideophycideae; Palmariales; Palmariaceae. XX RN [1] RP 1-4870 RA Singh R.K.; RT "The Organization and Primary Structure of the Plastid rRNA Operon RT from the Red Alga Palmaria palmata"; RL Unpublished. XX RN [2] RP 1-4870 RA Singh R.K.; RT ; RL Submitted (09-NOV-1992) on tape to the EMBL Data Library by: RL RAMA K SINGH Ph.D., MARINE BIOSCIENCES, INSTITUTE FOR MARINE RL BIOSCIENCES, NATIONAL RESEARCH COUNCIL, 1411 OXFORD STREET, RL HALIFAX, NOVA SCOTIA, B3H 3Z1, CANADA XX CC *source: haplotype=haploid; CC *source: tissue=thallus; CC *source: is_germline=N; XX FH Key Location/Qualifiers FH FT rRNA 1..1486 FT /gene="16SrRNA" FT tRNA 1545..1618 FT /gene="tRNAIle" FT tRNA 1624..1696 FT /gene="tRNAAla" FT rRNA 1743..4627 FT /gene="23SrRNA" FT rRNA 4651..4771 FT /gene="5SrRNA" XX SQ Sequence 4870 BP; 1419 A; 1003 C; 1343 G; 1105 T; 0 other; BASE COUNT 397 a 336 c 436 g 317 t 1231 others ORIGIN 1 |--------- ACACCAUGGA GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCUU--A ACACAUGCAA GUCGAACG|A A--------- --------gg u(uu------ 121 ---------- --u------- )acc------ ---------- ------UU-- AGU--GGCGG 181 ACGGGUGAGU AA-CACGUGA GA-AUCUAC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGAAUA ACAG------ ---------- --------UU G(GAAA)CGA 361 -UUGCUAAUG CC-CCAU-Aa ---------- ---------- ---------- --------GC 421 U-------(G AAA---)--- ----AGU--- ---AAAAu-- ---------- ---------- 481 GA-------- ------(--- -------uuu u------)-- -------|-- ---UCGCCCA 541 GGGA-UGA|G -CUCGCGC|- CUGAUUA-GC UAGUUGG-UA -AG(A-UAAA AG)-CUUACC 601 AA|GGCAACG AU|CAGUAGC UG|GUUU(GA GA)GGACGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UU C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GC- U-GACGGA|G CAAUACCGCG UGAGGGAAGA AUGCC(---C 781 GUG--)CG-U U--GUAAACC UC|UUUU-CU UAGGGAAGAA GC-------- (--------) 841 --------UC UGACG|GU-A CCU-AAAGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGAG|GA UGCAAGCGUU AU-CCGGAAU CACUGGGC|G 961 UAAAGUGU-A GUAGGUG|GC UUAUAAAG-| UCC-GCUGUU AAAUCUUAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUAA-GC-CA GCAGU--AGA -AAC-U|UCU -AG-G-CUAG AG-UA|UGGU 1141 A-----GGGG CAGAG|GGAA UUCCCAG-UG UAGCG(GUGA AA)UGCGUAG AUA---UUGG 1201 GAAGAACACC AGA---GGC( GAAA)GC|G| CUCUG-CUA| GGCCA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACACU 1321 |CAG-AGACG AAAGCUAGGG GAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|GA UG-UUGCGCG ---------- --------(- 1441 ------uauc gauc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UAUC-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUAUGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCG-U|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGAGCUUG ACA----UG| -UC-ACG--A A------UUU UUUC-----( 1741 GAG-A-)GAA AA-AAG---U G--CC----- ----(UUAG- -----)---- -----GGAA- 1801 ---------- -----|CGUG AACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUG| UCUUUA-G-U 1921 UGCCA-UCA- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --uuuagu-- )-------UG 2101 |GGCACUCUA GAGAGACUGC CGGU(GACAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GUAAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACGCUC UGGGCUAC-A 2221 CACGUGCUAC AAUGGU--CG CGACAAAGAG UU----GCCA GUCU------ ---------- 2281 ----(----G CAA-)----- ---------- ----AGAC-G CGCUAAUC-U CAU-AAACGU 2341 GGCCUCAGUU CGGAUUGUAG GC(--UGAAA CUC)GCCUAC AUGAAGGUGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCUAC)AC GGCGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAC GGAAGCUGG- CCACGCCCAA 2521 AGUCGUU--- ACCCU-AACC -(-----uuu u------)-G G-AGG-GGG- GC-GCCU-AA 2581 GG-CAGGGCU AGUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUUU--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS (3)-Viridi 2717 bp RNA RNA 17-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 2717 others ORIGIN 1 |......... .......... ...-...... .......... .......... .......... 61 .......... .......... .....--.-. .......... ...------- ---------- 121 ---------- ---------- ---------. ......---- -----..... ...--...-- 181 ---------- -------... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......--. 301 ...------- --....---- ---------- ---....... .....---.. ....--.... 361 -......... .-...-..-. ---------- ---------- -------... ..-....... 421 ..------.. ........-- ----...... .......... ..-------- ---------- 481 .......... .-..-....- .......--. .......... .......... ........-. 541 ....-..... -......... .........- -......... .-...-.... .......... 601 ......---- -.-.....|. .......... ...|.....| ...--..... .......... 661 ......-... .......-.. |...-..... -.--....-- -......... .....-..-. 721 .......... -...------ ---------- ---------- ---------- ---------- 781 ---------- ----...... .....----- --........ ..-.....-. |..-----.. 841 .--------- ------.... ......-... .......... .........- .........- 901 --.....-.. ...---..-| ......|... .-........ ..-....... ........|. 961 .......... .......... ........-. |..-...... .......... .......... 1021 .......... .......... .......... .......... .......... ....------ 1081 ---...-..- .......-.| .....---.. ......-... -..-.----. .|-....... 1141 ..----.... .......... ....------ -......-.. ...------- ---------- 1201 ---------- ---------- |--------- ---------- ...-.--... .......... 1261 .......... .......... .......... .........- ---------- ....-..... 1321 -....|.... .......... .......... .....-.... .-------.. .|.--..... 1381 ...-...-.. ........-- --..-..... ..-..-.... .-.....--- ---------- 1441 --------.. ..---..... ....--.--. ....----.- -..--..--- ---------- 1501 ---------- ---------- ---------- --....---- --------.. .......... 1561 -....|.... ..|..-.... .......... .....-.... .......... .......... 1621 ......-... .......... ......-... .......... .......... .....----- 1681 -.-------. .......... ....---..| ...-...... .------... ......---. 1741 ...-...... ..-....... .......--- ----...--- ------.--- -----..... 1801 ..-------- -----..... .--.|..... ..---..... ..-------- --........ 1861 .....--.-- .--....... ...------- ---------. .-........ ......-... 1921 ....-..... .......-.- -......... .........- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------. .......--- ...--..... 2101 .......... ....|||... .......... ----..---- ---....... ...------. 2161 .......... .......... .......--. .......... .......... ........-. 2221 .......... .......-.. .......... ...---.... ....------ ---------- 2281 ----.----. ...-...... .......... .......... ........-. .......... 2341 .......... .......... ...--..... .......... .......... .......--- 2401 ---....... .......... -......... .......... ...-....-- ---------- 2461 -------... .......... .......... .......... .......... .......... 2521 .......--- .......... .......... .......... .-........ .......-.. 2581 ..-....... .......... .......... .......... .......... .......... 2641 .......... .......-.. .......... .......... .......... .......... 2701 .......... ......| // LOCUS (4)-Chloro 2717 bp RNA RNA 17-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 2717 others ORIGIN 1 |......... .......... ...-...... .......... .......... .......... 61 .......... .......... .....--.-. .......... ...------- ---------- 121 ---------- ---------- ---------. ......---- -----..... ...--...-- 181 ---------- -------... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......--. 301 ...------- --....---- ---------- ---....... .....---.. ....--.... 361 -......... .-...-..-. ---------- ---------- -------... ..-....... 421 ..------.. ........-- ----...... .......... ..-------- ---------- 481 .......... .-..-....- .......--. .......... .......... ........-. 541 ....-..... -......... .........- -......... .-...-.... .......... 601 ......---- -.-.....|. .......... ...|.....| ...--..... .......... 661 ......-... .......-.. |...-..... -.--....-- -......... .....-..-. 721 .......... -...------ ---------- ---------- ---------- ---------- 781 ---------- ----...... .....----- --........ ..-.....-. |..-----.. 841 .--------- ------.... ......-... .......... .........- .........- 901 --.....-.. ...---..-| ......|... .-........ ..-....... ........|. 961 .......... .......... ........-. |..-...... .......... .......... 1021 .......... .......... .......... .......... .......... ....------ 1081 ---...-..- .......-.| .....---.. ......-... -..-.----. .|-....... 1141 ..----.... .......... ....------ -......-.. ...------- ---------- 1201 ---------- ---------- |--------- ---------- ...-.--... .......... 1261 .......... .......... .......... .........- ---------- ....-..... 1321 -....|.... .......... .......... .....-.... .-------.. .|.--..... 1381 ...-...-.. ........-- --..-..... ..-..-.... .-.....--- ---------- 1441 --------.. ..---..... ....--.--. ....----.- -..--..--- ---------- 1501 ---------- ---------- ---------- --....---- --------.. .......... 1561 -....|.... ..|..-.... .......... .....-.... .......... .......... 1621 ......-... .......... ......-... .......... .......... .....----- 1681 -.-------. .......... ....---..| ...-...... .------... ......---. 1741 ...-...... ..-....... .......--- ----...--- ------.--- -----..... 1801 ..-------- -----..... .--.|..... ..---..... ..-------- --........ 1861 .....--.-- .--....... ...------- ---------. .-........ ......-... 1921 ....-..... .......-.- -......... .........- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------. .......--- ...--..... 2101 .......... ....|||... .......... ----..---- ---....... ...------. 2161 .......... .......... .......--. .......... .......... ........-. 2221 .......... .......-.. .......... ...---.... ....------ ---------- 2281 ----.----. ...-...... .......... .......... ........-. .......... 2341 .......... .......... ...--..... .......... .......... .......--- 2401 ---....... .......... -......... .......... ...-....-- ---------- 2461 -------... .......... .......... .......... .......... .......... 2521 .......--- .......... .......... .......... .-........ .......-.. 2581 ..-....... .......... .......... .......... .......... .......... 2641 .......... .......-.. .......... .......... .......... .......... 2701 .......... ......| // LOCUS chl.C.elli 2717 bp RNA RNA 18-JAN-1988 DEFINITION chloroplast:Chlorella ellipsoidea. ACCESSION No information KEYWORDS No information. SOURCE chloroplast:Chlorella ellipsoidea. ORGANISM chloroplast:Chlorella ellipsoidea. REFERENCE 1 (bases 1 to 46880) AUTHORS No information JOURNAL published:Yamada, NAR 16:9865(1988) STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X12742 BASE COUNT 435 a 335 c 459 g 354 t 1134 others ORIGIN 1 |~~~~~~~~~ ~UUUCAUGGA GAG-UU(UCG A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGAACG|G A---gguuug cuu-uuuuua a(gc------ 121 ---------- --uuagg--- )uuaaaaa-- -aaaguaaau uc----UU-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUAC- CUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGC------- --GGGGGACA ACAA------ ---------- --------CU G(GAAA)CGG 361 -UUGCUAAUA CC-CCAU-AA ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGU--- ---AAAA--- ---------- ---------- 481 ggaa------ ------(--- -----u-acu a------)-- -------|-- -UUCUGUCUA 541 AAGA-UGG|G -CUUGCGU|- CUGAUUA-GC UUGUUGG-UG -AG(G-UAAU UG)-CUUACC 601 AA|GGCAACG AU|CAGUAGC UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UU C(UA-CG)GA -A--GGCAG- CAGUGAGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GC- U-GACGGA|G CAAUGCCGCG UGGAGGAUGA CAGCC(---U 781 GUG--)GG-U C--GUAAACU CC|UUUU-CU CAGAGAAGAA GU-------- (--------) 841 --------UC UGACG|GU-A UCU-GAGGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACGGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GU UUAUUAAG-| UCU-ACUGUU AAAGAUCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CUGA-GU-CG GCAGU--AGA -AAC-U|AAU -GA-G-CUUG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUCCGGG-UG UAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 GAAGAACACC AAU---GGC( GAAA)G-|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- AACUGACACU 1321 |CAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|AG UG-CUGUGCG A--------- --------(- 1441 -------cuc aaa--)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|ACGUCCAG UACU-GUAGC (UAAC)GCGU 1561 -GAAGUAUCC |C|GCCUGGG GAGUAUGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-AUU--U A------AUC UCUU-----( 1741 GAA-A-)AAG AG-AUuuuga a--acuugug ----(cuuug -----)---- cacaaguug- 1801 ---------- -----|GGUG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUG| UUUUUA-G-U 1921 UGCU------ ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- uuuaaaauau acaauuuaaa 2041 aggaaugcga agcauaacuu cgcauacuuu aguauguga( ---------- )--------- 2101 |AGGAAACUA CAAAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUAUGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CA GGACAAUGAG AU----GCUA CCUC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GAGC-A AGCUAACC-U CAA-AAACCU 2341 GGUCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGUCGG AAUCGCU--- 2401 ---AGUAAU- CGCUGG(UC- -AGCCAU)AC AGCGGUGAAU AC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAC CAGAGUCGG- CUUGGCCCAA 2521 AGUCGUA--- ACUCU-AACC -(-----uuc g------)-G G-AAG-AGA- GC-GCCU-AA 2581 GG-CAGG-CU GGUAAUGAGA GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUUA--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.C.mira 2717 bp RNA RNA 11-JAN-191 DEFINITION Chlorella mirabilis. ACCESSION No information KEYWORDS No information. SOURCE Chlorella mirabilis. ORGANISM Chlorella mirabilis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X65100 LOCUS CHLCPSSRRO 1629 bp ds-DNA ORG 23-JUN-1992 DEFINITION C.mirabilis plastid DNA for 16S-like rRNA small subunit ACCESSION X65100 KEYWORDS small subunit ribosomal RNA. SOURCE Chloroplast Chlorella mirabilis DNA. ORGANISM Chloroplast Chlorella mirabilis Eukaryota; Chlorophycota; Chlorophyceae; Chlorococcales; Oocystaceae. REFERENCE 1 (bases 1 to 1629) AUTHORS Huss,V.A., Hirsh,E. and Giovannoni,S.J. JOURNAL Unpublished (1992) STANDARD full automatic COMMENT *source: strain=748-I (type strain); From EMBL entry CMSSRRNA; dated 01-APR-1992. FEATURES Location/Qualifiers misc_feature 1..30 /note="PCR amplification primer" rRNA 1..1629 /product="small subunit rRNA" misc_feature 1606..1629 /note="PCR amplification primer" BASE COUNT 431 a 348 c 476 g 368 t 6 others ORIGIN BASE COUNT 431 a 348 c 476 g 368 t 1094 others ORIGIN 1 |--------- UGCCUGCAGA GAG-UU(Y-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGAACG|G A--gauuuua ugu-uuuaaa a(cu------ 121 ---------- --ug------ )uuuuaaa-- -acauaaaau c-----UU-- AGU--GGCGG 181 ACGGGUGAGG AA-CGCGUAA GA-ACCUAC- CUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGG------- --GAGGGACA ACAA------ ---------- --------CU G(GAAA)CGG 361 -UUGCUAAUA CC-UCAU-AU ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGU--- ---AAAA--- ---------- ---------- 481 GGGuua-ua- -aa---(--- ---ucu-acg a------)uu u---au-|-u auUCCGCCUA 541 AAGA-UGG|G -CUUGCGU|- CUGAUUA-GC UUGUUGG-UG -GG(G-UAAU UG)-CUUACC 601 AA|GGCGACG AU|CAGUAGC UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGURAGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGCCGCG UGGAGGAUGA CAGCC(---U 781 GUG--)GG-U C--GUAAACU CC|UUUU-CU CAGAAAAGAA GA-------- (--------) 841 --------UC UGACG|GU-A UCU-GAGGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GU UUAUUAAG-| UCU-ACUGUU AAAGAUCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CUGA-GC-CG GCAGU--GGA -AAC-U|AAU -AA-G-CUUG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUCCCGG-UG UAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 GAAGAACACC AAU---GGC( GAAA)GC|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- AACUGACACU 1321 |GAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|AG UG-CUGUGCG ---------- --------(- 1441 ------acuc aaac-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUCCAG UACU-GUAGC (UAAC)GCGU 1561 -GAAGUAUCC |C|GCCUGGG GAGUAUGCUC (GCAA)GGGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGYU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-AUU--U A------GUC UUUU-----( 1741 GAA-A-)AAA AG-ACaguau u--ucuaacc auc-(uuua- -----)-gau gguuagauu- 1801 ---------- -----|GGUG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUG| UCUUUA-C-U 1921 UGCCA-U--- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ------uacu uuuaucagcg aaguaguuau aaaucaacua 2041 gcuugucgau uuauuuaagc uuugcucguu uaguguguu( ---------- )--------- 2101 |GGGAAAUUA GAGAGACUGC CGGU(GAGAA ----)----- ---------- ---------G 2161 CCGGRGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUAUGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG GGACAAUGAG AU----GCAA CCUC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GAGC-A AGCUAACC-U CAA-AAACCC 2341 GGUCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGUCGG AAUCGCU--- 2401 ---AGUAAU- CGCUGG(UC- -AGCCAU)AC AGCGGUGAAU AC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGGAGCUGG- CUAUGCCCAA 2521 AGUCGUU--- ACCCC-AACC u(cggc-gua agcag--)aG G-AGG-GGG- AU-GCCU-AA 2581 GG-CAGAGCU AGUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGNGG 2641 NUGGAUCACC UCCUUG--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.C.prot 2717 bp RNA RNA 11-JAN-191 DEFINITION Chlorella protothecoide. ACCESSION No information KEYWORDS No information. SOURCE Chlorella protothecoide. ORGANISM Chlorella protothecoide. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X65688 ID CPSSRRNA standard; RNA; ORG; 1541 BP. XX AC X65688; XX DT 25-MAY-1992 (Rel. 31, Created) DT 04-JUN-1992 (Rel. 32, Last updated, Version 7) XX DE C.protothecoides plastid DNA for small subunit (16S-like) ribosomal DE RNA XX KW ribosomal RNA; small subunit ribosomal RNA. XX OS Chlorella protothecoides OC Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; OC Chlorococcales; Oocystaceae. XX OG Plastid XX RN [1] RP 1-1541 RA Huss V.A.R.; RT ; RL Submitted (24-APR-1992) on tape to the EMBL Data Library by: RL V.A.R. Huss, Institut fuer Botanik und Pharmazeutische Biologie, RL Universitaet Erlangen, Staudtstr 5, W 8520 Erlangen, FRG XX RN [2] RP 1-1541 RA Huss V.A.R., Hatzack F., Fox G.E.; RT ; RL Unpublished. XX CC *source: strain=211-7a (Type strain); XX FH Key Location/Qualifiers FH FT misc_feature 1..30 FT /note="PCR amplification primer" FT rRNA 1..1541 FT /product="small subunit rRNA" FT misc_feature 1518..1541 FT /note="PCR amplification primer" XX SQ Sequence 1541 BP; 438 A; 313 C; 433 G; 353 T; 4 other; BASE COUNT 438 a 313 c 433 g 353 t 1180 others ORIGIN 1 |--------- UGCCUGCAGA GAG-UU(Y-G A)UCCU|GGC UCAGGAUAAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUUGUACG|A A-------gg uau-uuuuuc u(cu------ 121 ---------- --cg------ )ggaaaag-- -auauAC--- ------UG-- AGU--GGCGG 181 ACGGGUGAGU AA-CACGUAA GA-ACCUAC- CUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------U 301 GGA------- --AAGGGACA ACUA------ ---------- --------UU G(GAAA)CGA 361 -UAGCUAAUA CC-UUAU-AU ---------- ---------- -------u-- --------GC 421 U-------(G AGA---)--- ----AGU--- ---GAAA--- ---------- ---------- 481 AAU------- ------(--- -------gaa a------)-- -------|-- --AUUGCCAA 541 GAGA-UGG|G -CUUGCGC|- CUGAUUA-GC UAGUUGG-UG -UG(G-UAAA GG)-CAUACC 601 AA|GGCAAUG AU|CAGUAGC UG|UUCU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGAGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGCCGCG UGAAGGAUGA AGGCC(---U 781 AUG--)GG-U U--GUAAACU UC|UUUU-CU CAGAAAAGAA UU-------- (--------) 841 ---------A UGACG|GU-A UCU-GAGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUU|GU UUAAAAAG-| UAU-UCUGUC AAAGAUUAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CUAG-AU-AG GCAGA--AUA -AAC-U|UUU -AA-G-CUAG AG-UU|UGGU 1141 A-----GAGG CAGAG|GGAA UUCCCGG-UG GAGCG(GUGA AA)UGCGUAG AUA---UCGG 1201 GAGGAACACC AAA---GGC( GAAG)GC|A| CUCUG-CUG| GGCCA--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUAACACU 1321 |GAG-AGACG AAAGCGAGGG GAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 C-GCCGUAAA CAAUGGAA-- --AC|UA|GG UG-UUGGGUG ---------- -------u(- 1441 ------auaa aaau-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CAUUCAG UAUC-GUAGC (UAAC)GCAU 1561 -UAAGUUUCC |C|GCCUGGG GAGUAUGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGAACCC-GC ACA------- AUUGGU|GGG GUACGUGGUU UAAUUCG-(A UGCAACG)CG 1681 ARGAACCUUA CCAGGAUUUG ACA----UG| -UC-ACU--u g------uuu cuuca----a 1741 cuuacuacuu aauugg---u u--uuaa--- -gcg(gaaa- -----)ca-- ---uuaaaa- 1801 ---------- -----|AGUG AACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(UUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUU| UUUUGA-A-U 1921 UGCUU-G--- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ------gcgc uuuuaaacgc uuuuagaga( ---------- )--------- 2101 |GGAAA-UUC AAAAUACUGC CGGU(GACAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUAUAUCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG GAACAAAGAG AA----GCGA CCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGAC-A AGCUAACC-U CAA-AAAUCC 2341 GGUCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGUUGG AAUCAAU--- 2401 ---AGUAAU- CGCAGG(UC- -AGCCAC)AC UGCGGUGAAU AC--GUU--- ---------- 2461 -------UCC GGGUUUUGCA CACACCGCCC GUCACACCAC GGAAAUUGG- CUACGCCCGA 2521 AGUCAUU--- ACUCU-AACC a(---u-cua a------)uG G-AGG-GGG- AU-GCCU-AA 2581 GG-CGGGGCU AGUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGNGG 2641 NUGGAUCACC UCCUUG--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.C.sa.1 2717 bp RNA RNA 11-JAN-191 DEFINITION Chlorella saccharophila. ACCESSION No information KEYWORDS No information. SOURCE Chlorella saccharophila. ORGANISM Chlorella saccharophila. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: D11349 LOCUS CHLCPSA16S 1502 bp ss-rRNA RNA 04-SEP-1994 DEFINITION Chlorella saccharophila chloroplast 16S ribosomal RNA. ACCESSION D11349 KEYWORDS chloroplast 16S ribosomal RNA; protein synthesis. SOURCE Chlorella saccharophila (strain Chlorella saccharophila) rRNA. ORGANISM Chlorella saccharophila Eukaryota; Chlorophycota; Chlorophyceae; Chlorococcales; Oocystaceae. REFERENCE 1 (bases 1 to 1502) AUTHORS Oyaizu,H., Matsumoto,S. and Takeda,H. TITLE Polyphyletic origins of chlorophyte chloroplasts JOURNAL Unpublished (1992) STANDARD full automatic COMMENT These data kindly submitted in computer readable form by: Hiroshi Oyaizu Faculty of Agriculture The University of Tokyo Bunkyo-ku, Tokyo 183 Japan Phone: 03-3812-2111 x5240 Fax: 03-3812-0544. NCBI gi: 534863 FEATURES Location/Qualifiers source 1..1502 /organism="Chlorella saccharophila" /strain="Chlorella saccharophila" /sequenced_mol="rRNA" BASE COUNT 417 a 306 c 432 g 347 t ORIGIN BASE COUNT 417 a 306 c 432 g 347 t 1215 others ORIGIN 1 |--------- nnnnnnnnnn nnn-nn(n-n n)nnnn|nnn nCAGGUUGAA CGC-UGGCGU 61 CAUGCUU--A ACACAUGCAA GUCGAACG|A Gaauuucuaa aaa-uuuaag c(uu------ 121 ---------- --cg------ )guuuaaa-- -guuuuaguu cu-u--UU-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUAC- CUUA------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------U 301 GGU------- --GAGGGAUA CCAA------ ---------- --------CU G(GAAA)CGG 361 -UUGCUAAUA CC-UCAU-AU ---------- ---------- ---------- --------GC 421 U-------(G AGA---)--- ----AGU--- ---AAAA--- ---------- ---------- 481 GGUGU----- ------(--- --------AC U------)-- -------|-- ACAUCGCCAU 541 AAGA-GGG|G -CUUGCGU|- CUGAUUA-GU UAGUUGG-UG -GG(G-UAAA UG)-CUUACC 601 AA|GACUAUG AU|CAGUAGU UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGAGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGUCGCG UGGAGGAAGA AGGCC(---C 781 GUG--)GG-U C--GUAAACU CC|UUUU-GU CAAAGAAGAA AA-------- (--------) 841 --------UA UGACG|GU-A UUU-GACGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGGG|GA UGCAAGCGUU AU-CCGGAAU UAUUGGGC|G 961 UAAAGGGUCC UGAGGUG|GC UAGCCAAG-| UCU-AUUGUG AAAUAUCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CUGA-AC-AU GCGGU--GGA -AAC-U|GGA -AA-G-CUUG AG-UA|CAGU 1141 A-----GGGG CGGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCAUAG AUA---UCGG 1201 GAAGAACACC AAC---GGC( GAAA)GC|A| CUCCG-CUG| GGCUG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACACU 1321 |GAC-AGACG AAAGCUAGGG UAGCGAAAGG G(AUU-A-GA UAC)-CCCUG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAC-- --AC|UA|AC UA-UUGAAUG A--------- --------(- 1441 ------aauc aaa--)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|uCGUACAG UGGU-GAAGC (UAAC)GCGA 1561 -UAAGUGUCC |C|GCCUGGG GAGUAUGCUC (GCAA)GGGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UU| -UU-ACU--U U------CCU UUUU-----( 1741 GAA-A-)AAA AG-GGu-gua c--uacuu-- ----(uucg- -----)---- --aaguaga- 1801 ---------- -----|GGUA UAAA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUGA) GGUGUCGGG( UUAAGU)CCU UUAACGAGCG CAACCCUUG| UCUUUA-G-U 1921 UGAGU-Cugu ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- -----cuuuu auaaagaua( ---------- )------gua 2101 |UCCAAACUA GAGAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GAGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACGUCC UGGGCUAC-A 2221 CACGUGCUAC AAUGGC--CG GGACAAAGAG AU----GCAA CCCU------ ---------- 2281 ----(----G CGA-)----- ---------- ----AGGU-A AGCUAACC-U CAA-AAACCC 2341 GGUCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGUCGG AAUCGCU--- 2401 ---AGUAAA- CGCUGG(UC- -AGA-AU)AC AGCGUUGAAU AUU-GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACAUUCG GGGAAUUGG- GUUGGUUCGA 2521 AAUCAUU--- AUCUU-AACC u(-----uuu -------)aG G-AGA-GAG- GU-GCUU-AC 2581 AG-CCGGUCU AGUGACUCAA AUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCnn 2641 nnnnnnnnnn nnnnnn--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.C.sa.2 2717 bp RNA RNA 11-JAN-191 DEFINITION Chlorella saccharophila. ACCESSION No information KEYWORDS No information. SOURCE Chlorella saccharophila. ORGANISM Chlorella saccharophila. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: D11348 LOCUS CHLCPS16S 1636 bp ss-rRNA RNA 04-SEP-1994 DEFINITION Chlorella saccharophila chloroplast 16S ribosomal RNA. ACCESSION D11348 KEYWORDS chloroplast 16S ribosomal RNA; protein synthesis. SOURCE Chlorella saccharophila (strain Chlorella saccharophila) rRNA. ORGANISM Chlorella saccharophila Eukaryota; Chlorophycota; Chlorophyceae; Chlorococcales; Oocystaceae. REFERENCE 1 (bases 1 to 1636) AUTHORS Oyaizu,H., Matsumoto,S. and Takeda,H. TITLE Polyphyletic origins of chlorophyte chloroplasts JOURNAL Unpublished (1992) STANDARD full automatic COMMENT These data kindly submitted in computer readable form by: Hiroshi Oyaizu Faculty of Agriculture The University of Tokyo Bunkyo-ku, Tokyo 183 Japan Phone: 03-3812-2111 x5240 Fax: 03-3812-0544. NCBI gi: 534862 FEATURES Location/Qualifiers source 1..1636 /organism="Chlorella saccharophila" /strain="Chlorella saccharophila" /sequenced_mol="rRNA" BASE COUNT 445 a 351 c 468 g 372 t ORIGIN BASE COUNT 445 a 351 c 468 g 372 t 1081 others ORIGIN 1 |--------- nnnnnnnnnn nnn-nn(n-n n)nnnn|nnn nCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGAACG|G A-gguuuaau uuu-uuuaag c(uu------ 121 ---------- --ag------ )guuuaaa-- -aaaaauuaa au-uucUU-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUAC- CUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GGGGGACA ACAA------ ---------- --------CU G(GAAA)CGG 361 -UUGCUAAUA CC-CCAU-AA ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGU--- ---AAAA--- ---------- ---------- 481 GGAAU----- ------(--- --------AG U------)-- -------|-- AUUCUGCCUA 541 AAGA-UGG|G -CUUGCGU|- CUGAUUA-GC UAGUUGG-UG -GG(G-UAAU UG)-CCUACC 601 AA|GGCAACG AU|CAGUAGC UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UU C(UA-CG)GA -A--GGCAG- CAGUGAGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGCCGCG UGGAGGAUGA CAGCC(---U 781 GUG--)GG-U C--GUAAACU CC|UUUU-CU CAGAGAAGAA GU-------- (--------) 841 --------UC UGACG|GU-A UCU-GAGGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACGGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GU UCAUUAAG-| UCU-ACUGUU AAAGAUCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CUGA-GU-CG GCAGU--AGA -AAC-U|AAU -GA-G-CUUG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUCCCGG-UG UAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 GAAGAACACC AAU---GGC( GAAA)GC|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- AACUGACACU 1321 |CAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|AG UG-CUGUGCG ---------- --------(- 1441 ------acuc aaaa-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUCCAG UACU-GUAGC (UAAC)GCGU 1561 -GAAGUAUCC |C|GCCUGGG GAGUAUGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-AUU--U -------AAC UCU------( 1741 GAA-A-)AAG AGGUUu---u a--cuagaac cc--(uuuu- -----)--gg guuuuuaga- 1801 ---------- -----|GGUG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUG| UUUUUA-G-U 1921 UGCUU-U--- cuaaguagaa auaaccucag cuuuaucacg ucgcuugauu acucuuuggu 1981 cuuuaccuac acggcccuug cucauuagcc cuugcuaaug aguaaagccu uugguaaaga 2041 cgcagaagac uuuuuuucug cguacgcuac gauauguca( ---------- )--------- 2101 |AGGAAACUA GAAAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUAUGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGU--UA GGACAAUGAG AU----GCUA CCUC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GAGC-A AGCUAACC-U CAA-AAACCU 2341 AAUCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGUUGG AAUCGCU--- 2401 ---AGUAAU- CGCUGG(UC- -AGCCAU)AC AGCGGUGAAU AC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAG AGUAGUUGG- CUUGGCCCAA 2521 AGUCGUA--- ACUCU-AACC -(---c-gca a------)-G G-GCG-AGA- GC-GGCU-AA 2581 GG-CAGGGCU GGUAAUGAGA GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCnn 2641 nnnnnnnnnn nnnnnn--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.C.soro 2717 bp RNA RNA 11-JAN-191 DEFINITION Chlorella sorokiniana. ACCESSION No information KEYWORDS No information. SOURCE Chlorella sorokiniana. ORGANISM Chlorella sorokiniana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X65689 ID CSSSRRNAX standard; RNA; ORG; 1493 BP. XX AC X65689; XX DT 25-MAY-1992 (Rel. 31, Created) DT 04-JUN-1992 (Rel. 32, Last updated, Version 7) XX DE C.sorokiniana plastid DNA small subunit (16S-like) ribosomal RNA XX KW ribosomal RNA; small subunit ribosomal RNA. XX OS Chlorella sorokiniana OC Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; OC Chlorococcales; Oocystaceae. XX OG Plastid XX RN [1] RP 1-1493 RA Huss V.A.R.; RT ; RL Submitted (24-APR-1992) on tape to the EMBL Data Library by: RL V.A.R. Huss, Institut fuer Botanik und Pharmazeutische Biologie, RL Universitaet Erlangen, Staudtstr 5, W 8520 Erlangen, FRG XX RN [2] RP 1-1493 RA Huss V.A.R., Hatzack F., Fox G.E.; RT ; RL Unpublished. XX CC *source: strain=211-8k (Type strain); XX FH Key Location/Qualifiers FH FT misc_feature 1..30 FT /note="PCR amplification primer" FT rRNA 1..1493 FT /product="small subunit rRNA" FT misc_feature 1470..1493 FT /note="PCR amplification primer" XX SQ Sequence 1493 BP; 391 A; 328 C; 461 G; 308 T; 5 other; BASE COUNT 391 a 328 c 461 g 308 t 1229 others ORIGIN 1 |--------- UGCCUGCAGA GAG-UU(Y-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGUACG|A A--------- ugc-aaugag g(cu------ 121 ---------- --ug------ )cuucauu-- -guaa----- ------UG-- AGU--GGCGG 181 ACGGGUGAGU AA-CACGUAA GA-ACCUAC- CUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------U 301 GGA------- --GAGGGACA ACCA------ ---------- --------UU G(GAAA)CGA 361 -UGGCUAAUA CC-UCGU-AU ---------- ---------- -------U-- --------GC 421 U-------(G AGA---)--- ----AGU--- ---GAAA--- ---------- ---------- 481 GAU------- ------(--- -------GAA A------)-- -------|-- --AUCGCCAA 541 GAGA-UGG|G -CUUGCGG|- CUGAUUA-GC UUGUUGG-UG -AG(G-UAAU GG)-CUUACC 601 AA|GGCAAUG AU|CAGUAGC UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGAGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGCCGCG UGAAGGAUGA AGGCC(---U 781 AUG--)GG-U U--GUAAACU UC|UUUU-CU CAGAGAAGAA UU-------- (--------) 841 ---------U UGACG|GU-A UCU-GAGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUCAAAAG-| UCU-CCUGUC AAAGAUCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CUGG-GC-CG GCAGG--AGA -AAC-U|CUG -AG-G-CUAG AG-UU|UGGU 1141 A-----GGGG CAGAG|GGAA UUCCCGG-UG GAGCG(GUGA AA)UGCGUAG AGM---UCGG 1201 GAGGAACACC AAA---GGC( GAAA)GC|A| CUCUG-CUG| GGCCA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- AACUGACACU 1321 |GAG-AGACG AAAGCGAGGG GAGCAAAAGG G(AUU-A-GA UAC)-CCCUG UAG-|UC-CU 1381 C-GCCGUAAA CGAUGGAU-- --AC|UA|GA UG-UUGGAUA ---------- --------(- 1441 ------gguu aaag-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CAUUCAG UAUC-GGAGC (UAAC)GCGU 1561 -GAAGUAUCC |C|GCCUGGG GAGUAUGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGACUUG ACA----UG| -CC-ACU--U -------UUU CCCU-----( 1741 GAA-A-)GGG GA-AGu---- ---------- ----(uccag -----)---- ---------- 1801 ---------- -----|AGUG GRCA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(UUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUG| UUUUGA-A-U 1921 UGCC------ ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --aguuau-- )--------- 2101 |GGGAAAUUC AAAAGACUGC CGGU(GACAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACGUCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG GGACAAAGAG AU----GCAA ACCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGC-U AGCCAACC-U CAA-AAACCC 2341 GGUCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGUCGG AAUCGCU--- 2401 ---AGUAAU- CGCAGG(UC- -AGCCAU)AC UGCGGUGAAU AC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGGAGCUGG- CUAUGCCCAA 2521 AGUCGUU--- ACUCC-AACC C(-----uug u------)-G G-AGG-GGG- AC-GCCU-AA 2581 GG-CAGGGCU AGUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGNGG 2641 NUGGAUCACC UCCUUG--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.C.vu.1 2717 bp RNA RNA 11-JAN-191 DEFINITION Chlorella vulgaris. ACCESSION No information KEYWORDS No information. SOURCE Chlorella vulgaris. ORGANISM Chlorella vulgaris. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X16579 X16579 Nucleic Acids Research 17.9487 1989 BASE COUNT 395 a 331 c 457 g 308 t 1226 others ORIGIN 1 |--------- UGCCUGCAGA GAG-UU(Y-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGUACG|C A--------- ugc-aauuug g(cu------ 121 ---------- --ug------ )ccagauu-- -gcga----- ------UG-- AGU--GGCGG 181 ACGGGUGAGU AA-CACGUAA GA-ACCUAC- CUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------U 301 GGA------- --GAGGGAUA ACCA------ ---------- --------UU G(GAAA)CGA 361 -UGGCUAAUA CC-UCGU-AU ---------- ---------- -------u-- --------GC 421 U-------(G AGA---)--- ----AGU--- ---GAAA--- ---------- ---------- 481 gau------- ------(--- -------gaa a------)-- -------|-- --AUCGCCAA 541 UAGA-UGG|G -CUUGCGG|- CUGAUUA-GC UUGUUGG-UG -AG(G-UAAU GG)-CUUACC 601 AA|GGCAAUG AU|CAGUAGC UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGAGG-A AUUUUCCG-C 721 AAU-GGGC-( -GACA)-GCC U-GACGGA|G CAAUGCCGCG UGAAGGAUGA AGGCC(---U 781 AUG--)GG-U U--GUAAACU UC|UUUU-CU CAGAGAAGAA GC-------- (--------) 841 --------aU UGACG|GU-A UCU-GAGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUAAAAAG-| UCU-CCUGUC AAAGAUCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CUGG-GC-CG GCAGG--AGA -AAC-U|CUU -AG-G-CUAG AG-UU|UGGU 1141 A-----GGGG CAGAG|GGAA UUCCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 GAGGAACACC AAA---GGC( GAAA)GC|A| CUCUG-CUG| GGCCA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- AACUGACACU 1321 |GAG-AGACG AAAGCGAGGG GAGCAAAAGG G(AUU-A-GA UAC)-CCCUG UAG-|UC-CU 1381 C-GCCGUAAA CGAUGGAU-- --AC|UA|GA UG-UUGGGUA G--------- --------(- 1441 ------guua aa---)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|UCACUCAG UAUC-GUAGC (UAAC)GCGU 1561 -GAAGUAUCC |C|GCCUGGG GAGUAUGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGACUUG ACA----UG| -CC-ACU--U -------UUU CCCU-----( 1741 GAA-A-)GGG GA-AG----u ---------- ----(ucca- -----)---- --------g- 1801 ---------- -----|AGUG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(UUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUG| UUUUGA-A-U 1921 UGCC------ ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --aguaau-- )--------- 2101 |GGGAAAUUC AAAAGACUGC CGGU(GACAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACGUCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG GGACAAAGAG AU----GCAA ACCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGC-U AGCCAACC-U CAA-AAACCC 2341 GGUCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGUCGG AAUCGCU--- 2401 ---AGUAAU- CGCAGG(UC- -AGCCAU)AC UGCGGUGAAU AC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGGAGCUGG- CUAUGCCCAA 2521 AGUCGUU--- ACCCC-AACC u(-----uuu -------)aG G-AGG-GGG- AC-GCCU-AA 2581 GG-CAGAGCU AGUGACUAGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGWGG 2641 YUGGAUCACC UCCUUG--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.C.vu.2 2717 bp RNA RNA 11-JAN-191 DEFINITION Chlorella vulgaris. ACCESSION No information KEYWORDS No information. SOURCE Chlorella vulgaris. ORGANISM Chlorella vulgaris. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: D11347 LOCUS CHLCPV16S 1450 bp ss-rRNA RNA 04-SEP-1994 DEFINITION Chlorella vulgaris chloroplast 16S ribosomal RNA. ACCESSION D11347 KEYWORDS Chloroplast 16S ribosomal RNA; protein synthesis. SOURCE Chlorella vulgaris (strain Chlorella vulgaris) rRNA. ORGANISM Chlorella vulgaris Eukaryota; Chlorophycota; Chlorophyceae; Chlorococcales; Oocystaceae. REFERENCE 1 (bases 1 to 1450) AUTHORS Oyaizu,H., Matsumoto,S. and Takeda,H. TITLE Polyphyletic origins of chlorophyte chloroplasts JOURNAL Unpublished (1992) STANDARD full automatic COMMENT These data kindly submitted in computer readable form by: Hiroshi Oyaizu Faculty of Agriculture The University of Tokyo Bunkyo-ku, Tokyo 183 Japan Phone: 03-3812-2111 x5240 Fax: 03-3812-0544. NCBI gi: 534864 FEATURES Location/Qualifiers source 1..1450 /organism="Chlorella vulgaris" /strain="Chlorella vulgaris" /sequenced_mol="rRNA" BASE COUNT 389 a 320 c 444 g 297 t ORIGIN BASE COUNT 389 a 320 c 444 g 297 t 1267 others ORIGIN 1 |--------- nnnnnnnnnn nnn-nn(n-n n)nnnn|nnn nCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGUACG|C A--------- ugc-aauuug g(cu------ 121 ---------- --ug------ )ccagauu-- -gcga----- ------UG-- AGU--GGCGC 181 ACGGGUGAGU AA-CACGUAA GA-ACCUAC- CUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------U 301 GGA------- --GAGGGAUA ACCA------ ---------- --------UU G(GAAA)CGA 361 -UGGCUAAUA CC-UCGU-AU ---------- ---------- -------u-- --------GC 421 U-------(G AGA---)--- ----AGU--- ---GAAA--- ---------- ---------- 481 GAU------- ------(--- -------gaa a------)-- -------|-- --AUCGCCAA 541 UAGA-UGG|G -CUUGCGG|- CUGAUUA-GC UUGUUGG-UG -AG(G-UAAU GG)-CUUACC 601 AA|GGCAAUG AU|CAGUAGC UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGAGG-A AUUUUCCG-C 721 AAU-GGGC-( -GACA)-GCC U-GACGGA|G CAAUGCCGCG UGAAGGAUGA AGGCC(---U 781 AUG--)GG-U U--GUAAACU UC|UUUU-CU CAGAGAAGAA GC-------- (--------) 841 --------AU UGACG|GU-A UCU-GAGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUAAAAAG-| UCU-CCUGUC AAAGAUCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CUGG-GC-CG GCAGG--AGA -AAC-U|UUU -AG-G-CUAG AG-UU|UGGU 1141 A-----GGGG CAGAG|GGAA UUCCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 GAGGAACACC AAA---GGC( GAAA)GC|A| CUCUG-CUG| GGCCA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- AACUGACACU 1321 |GAG-AGACG AAAGCGAGGG GAGCAAAAGG G(AUU-A-GA UAC)-CCCUG UAG-|UC-CU 1381 C-GCCGUAAA CGAUGGAU-- --AC|UA|GA UG-UUGGGUa ---------- --------(- 1441 ------gguu aaau-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CACUCAG UAUC-GUAGC (UAAC)GCGU 1561 -GAAGUAUCC |C|GCCUGGG GAGUAUGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGACUUG ACA----UG| -CC-ACU--U -------UUU CCCU-----( 1741 GAA-A-)GGG GA-AGU---- ---------- ----(ucgag -----)---- ---------- 1801 ---------- -----|AGUG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(UUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUG| UUUUGA-A-U 1921 UGCCA-G--- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --uaaug--- )--------- 2101 |GGAAA-UUC AAAAGACUGC CGGU(GACAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACGUCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG GGACAAAGAG AU----GCAA ACCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGC-U AGCCAACC-U CAA-AAACCC 2341 GGUCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGUCGG AAUCGCU--- 2401 ---AGUAAU- CGCAGG(UC- -AGCCAU)AC UGCGGUGAAU AC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGGAGCUGG- CUAUGCCCAA 2521 AGUCGUU--- ACCCC-AACC -(---u-uuu a------)-G G-AGG-GGG- AC-GCCU-AA 2581 GG-CAGAGCU AGUGACUAGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCnn 2641 nnnnnnnnnn nnnnnn--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.C.vu.3 2717 bp RNA RNA 26-JUN-1997 DEFINITION Chloroplast Chlorella vulgaris C-27.; . ACCESSION AB0016 4 KEYWORDS . SOURCE Chloroplast Chlorella vulgaris C-27. ORGANISM Chloroplast Chlorella vulgaris C-27. REFERENCE 1 (bases 1 to 150613) AUTHORS Sugiura,M. TITLE Direct Submission JOURNAL Fax:+81-52-789-3081) Submitted (08-MAR-1997) to the DDBJ/EMBL/GenBank databases. Masahiro Sugiura, Nagoya University, Center for Gene Research; Chikusa-ku, Nagoya, Aichi 464-01, Japan (Tel:+81-52-789-3080, STANDARD No information REFERENCE 2 (sites) AUTHORS Wakasugi,T., Nagai,T., Kapoor,M., Sugita,M., Ito,M., Ito, S., Tsudzuki,J., Nakashima,K., Tsudzuki,T., Suzuki,Y., Hamada,A., Ohta,T., Inamura,A., Yoshinaga,K. and Sugiura,M. TITLE Complete sequence of the green alga Chlorella vulgaris chloroplast genome reveals the existence of genes possibly involved in chloroplast division. (tentative) JOURNAL Unpublished (1997) STANDARD No information REFERENCE 3 (sites) AUTHORS Wakasugi,T., Nagai,T., Kapoor,M., Sugita,M., Ito,M., Ito, S., Tsudzuki,J., Nakashima,K., Tsudzuki,T., Suzuki,Y., Hamada,A., Ohta,T., Inamura,A., Yoshinaga,K. and Sugiura,M. TITLE Complete nucleotide sequence of the chloroplast genome from the green alga Chlorella vulgaris: the existence of genes possibly involved in chloroplast division JOURNAL Proc. Natl. Acad. Sci. U.S.A. 94 (11), 5967-5972 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: AB001684 BASE COUNT 401 a 329 c 455 g 309 t 1223 others ORIGIN 1 |----aaaaa uuuucaugga GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGUACG|C A--------- ugc-aauuug g(cu------ 121 ---------- --ug------ )ccagauu-- -gcga----- ------UG-- AGU--GGCGG 181 ACGGGUGAGU AA-CACGUAA GA-ACCUAC- CUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------U 301 GGA------- --GAGGGAUA ACCA------ ---------- --------UU G(GAAA)CGA 361 -UGGCUAAUA CC-UCGU-AU ---------- ---------- -------u-- --------GC 421 U-------(G AGA---)--- ----AGU--- ---GAAA--- ---------- ---------- 481 GAU------- ------(--- -------gaa a------)-- -------|-- --AUCGCCAA 541 UAGA-UGG|G -CUUGCGG|- CUGAUUA-GC UUGUUGG-UG -AG(G-UAAU GG)-CUUACC 601 AA|GGCAAUG AU|CAGUAGC UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGAGG-A AUUUUCCG-C 721 AAU-GGGC-( -GACA)-GCC U-GACGGA|G CAAUGCCGCG UGAAGGAUGA AGGCC(---U 781 AUG--)GG-U U--GUAAACU UC|UUUU-CU CAGAGAAGAA GC-------- (--------) 841 --------AU UGACG|GU-A UCU-GAGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUAAAAAG-| UCU-CCUGUC AAAGAUCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CUGG-GC-CG GCAGG--AGA -AAC-U|CUU -AG-G-CUAG AG-UU|UGGU 1141 A-----GGGG CAGAG|GGAA UUCCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 GAGGAACACC AAA---GGC( GAAA)GC|A| CUCUG-CUG| GGCCA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- AACUGACACU 1321 |GAG-AGACG AAAGCGAGGG GAGCAAAAGG G(AUU-A-GA UAC)-CCCUG UAG-|UC-CU 1381 C-GCCGUAAA CGAUGGAU-- --AC|UA|GA UG-UUGGGUa ---------- --------(- 1441 ------gguu aaau-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CACUCAG UAUC-GUAGC (UAAC)GCGU 1561 -GAAGUAUCC |C|GCCUGGG GAGUAUGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGACUUG ACA----UG| -CC-ACU--U -------UUU CCCU-----( 1741 GAA-A-)GGG GA-AGU---- ---------- ----(uccag -----)---- ---------- 1801 ---------- -----|AGUG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(UUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUG| UUUUGA-A-U 1921 UGCCA-G--- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --uaaug--- )--------- 2101 |GGAAA-UUC AAAAGACUGC CGGU(GACAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACGUCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG GGACAAAGAG AU----GCAA ACCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGC-U AGCCAACC-U CAA-AAACCC 2341 GGUCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGUCGG AAUCGCU--- 2401 ---AGUAAU- CGCAGG(UC- -AGCCAU)AC UGCGGUGAAU AC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGGAGCUGG- CUAUGCCCAA 2521 AGUCGUU--- ACCCC-AACC u(---u-uua -------)-G G-AGG-GGG- AC-GCCU-AA 2581 GG-CAGAGCU AGUGACUAGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAACACC U-------|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.N.euca 2717 bp RNA RNA 11-JAN-191 DEFINITION Nanochlorum eucaryotum Nanochlorum eucaryotum. ACCESSION No information KEYWORDS No information. SOURCE Nanochlorum eucaryotum Nanochlorum eucaryotum. ORGANISM Nanochlorum eucaryotum Nanochlorum eucaryotum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X76084 X76084 LOCUS CHNERRNA 5431 bp DNA PLN 24-NOV-1993 DEFINITION N.eucaryotum chloroplast 16S rRNA, tRNA-Ile, tRNA-Ala and 23S rRNA genes. ACCESSION X76084 KEYWORDS 16S ribosomal RNA; 23S ribosomal RNA; tRNA-Ala; tRNA-Ile. SOURCE Nanochlorum eucaryotum ORGANISM Chloroplast Nanochlorum eucaryotum Eukaryota; Plantae; Thallobionta; Chlorophyta; Chlorophyceae. REFERENCE 1 (bases 1 to 5431) AUTHORS Weinblum,D. TITLE Direct Submission JOURNAL Submitted (10-NOV-1993) to the EMBL/GenBank/DDBJ databases. D. Weinblum, Inst. fuer Physiologiche Chemie, Univ. Mainz, Duesbergweg 6, 55099 Mainz, FRG STANDARD full automatic REFERENCE 2 (bases 1 to 5431) AUTHORS Schreiner,M., Geisert,M., Oed,M., Arendes,J., Guengerich,U., Breter,H.J., Stueber,K. and Weinblum,D. TITLE Phylogenetic relationship of the green alga Nanochlorum eukaryotum deduced from its chloroplast rRNA sequences JOURNAL Unpublished STANDARD full automatic FEATURES Location/Qualifiers source 1..5431 /organism="Nanochlorum eucaryotum" /chloroplast rRNA 90..1551 /product="16S ribosomal RNA" tRNA 1749..1819 /product="tRNA-Ile" tRNA 1914..1986 /product="tRNA-Ala" rRNA 2010..4964 /product="23S ribosomal RNA" BASE COUNT 1634 a 1073 c 1403 g 1321 t ORIGIN LOCUS CHNERRNA 5431 bp DNA PLN 24-NOV-1993 DEFINITION N.eucaryotum chloroplast 16S rRNA, tRNA-Ile, tRNA-Ala and 23S rRNA genes. ACCESSION X76084 KEYWORDS 16S ribosomal RNA; 23S ribosomal RNA; tRNA-Ala; tRNA-Ile. SOURCE Nanochlorum eucaryotum ORGANISM Chloroplast Nanochlorum eucaryotum Eukaryota; Plantae; Thallobionta; Chlorophyta; Chlorophyceae. REFERENCE 1 (bases 1 to 5431) AUTHORS Weinblum,D. TITLE Direct Submission JOURNAL Submitted (10-NOV-1993) to the EMBL/GenBank/DDBJ databases. D. Weinblum, Inst. fuer Physiologiche Chemie, Univ. Mainz, Duesbergweg 6, 55099 Mainz, FRG STANDARD full automatic REFERENCE 2 (bases 1 to 5431) AUTHORS Schreiner,M., Geisert,M., Oed,M., Arendes,J., Guengerich,U., Breter,H.J., Stueber,K. and Weinblum,D. TITLE Phylogenetic relationship of the green alga Nanochlorum eukaryotum deduced from its chloroplast rRNA sequences JOURNAL Unpublished STANDARD full automatic FEATURES Location/Qualifiers source 1..5431 /organism="Nanochlorum eucaryotum" /chloroplast rRNA 90..1551 /product="16S ribosomal RNA" tRNA 1749..1819 /product="tRNA-Ile" tRNA 1914..1986 /product="tRNA-Ala" rRNA 2010..4964 /product="23S ribosomal RNA" BASE COUNT 1634 a 1073 c 1403 g 1321 t ORIGIN BASE COUNT 405 a 306 c 430 g 321 t 1255 others ORIGIN 1 |~~~~~~~~~ ~~~UCACGGA GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGAACG|A A-------ca uaa-aauugu g(cu------ 121 ---------- --ug------ )cauaauu-- -uuauac--- ------UG-- AGU--GGCGG 181 ACGGGUGAGU AA-CACGUAA GA-ACCUAC- CUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------U 301 GGC------- --GAGGGACA ACCA------ ---------- --------UU G(GAAA)CGA 361 AUGGCUAAUA CC-UCAU-AU ---------- ---------- -------u-- --------AC 421 U-------(G AGA---)--- ----AGU--- ---GAAA--- ---------- ---------- 481 gau------- ------(--- -----g-aau a------)-- -------|-- --AUCACCAA 541 GAGA-UGG|G -CUU--GU|- CUGAUCA-GC UUGUUGG-UA -AG(G-UAAU GG)-CUUACC 601 AA|GGCAACG AU|CAGUAGC UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC A(UA-CG)GG aA--GGCAGG CAGUGAGG-A AUUUUCCG-C 721 AAUGGGGC-( GGAAA)-GCC GUGACGGA|G CAAUGCCGCG UGAAGGAUGA AUGCC(---U 781 AUG--)GGUU G--GUAAACU UC|UUUU-CU CAGAGAAGAA Uu-------- (--------) 841 ---------U UGACG|GU-A UCU-GAGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGAG|GA UCGAAGCGUU AU-CCGGAUU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GU UUAUCCAG-| UCU-UCUGUC AAAG-UCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC UUGG-AU-AG GCAGG--AGA -AAC-U|AAU -AG-A-CUAG AG-UU|CGGU 1141 A-----GGGG CAGAG|GGAA UUCCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---U-CG 1201 GA-GAACACC AAA---GGC( GAAA)GC|A| CUUCUgCUG| GGCCG--C-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- GACUGACACU 1321 |GAG-AGACG AAAGCGAGGG GAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-UC 1381 --GCCGUAAA CGAUGGAU-- --AC|UA|GG UG-UUGGGUG ---------- --------(- 1441 -------aua uua--)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CAUUCAG UACC-GUAGC (UAAC)GCGU 1561 -GAAGUAUCC |C|GCCUGGG GAGUAUGCUC (GCAA)GCGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCG-U|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-ACU--U -------UUU UCUU-----( 1741 GAA-A-)AAG AA-AGU---- ---------- ----(uccg- -----)---- ---------- 1801 ---------- -----|AGUG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-GCCUCGU 1861 |GUC(UUGA) GAUGUUGGG( UUAAGU)CC- GCAACGAGCG CAACCCUUA| UUU-gu-g-u 1921 ugcu------ ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --auuuua-- )--------- 2101 |ggaacuca- aagacucc-g u----gaua- ---------- ---------- ---------- 2161 --gcgagAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC U----gacgC UGGGC-AC-A 2221 CACGUGAUAC AAUGGC--UG GGACAAAGAG AU----G-aa cccc------ ---------- 2281 ----(----a caa-)----- ---------- ----ggca-- AGCCAACC-U CAA-AAACCC 2341 AGUCUUAGUU CGGAUUGUAG GC(--UGAAA CUC)GCCUAC AUGAAGCUGG AAU-GCU--- 2401 ---AGUAAUG CGCAGG(UCu auGCCAU)AC UGCGGUGAAU AC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGC-C GUCACACCAU GGAAGCUGG- CUAUGCC-AA 2521 AGUCG-U--- ACUC--AAC- -(-----uua g------)-- g-AGG-AGg- a---GCU-AA 2581 GG-CAGA-CU AGUGACUAGG GUG-AGU-GU -ACA--GUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAU-ACC UCCUUA--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS A.nidulans 2717 bp RNA RNA 25-JAN-1983 DEFINITION Anacystis nidulans. ACCESSION No information KEYWORDS No information. SOURCE Anacystis nidulans. ORGANISM Anacystis nidulans. REFERENCE 1 (bases 1 to 150613) AUTHORS No information JOURNAL Tomioka and Sugiura MGG191:46-50(1983) + get other reference STANDARD No information COMMENTS Organism information Culture collection: ???? Sequence information (bases 1 to 2717) Corresponding GenBank entry: X03538 K01982 X01296 Phylo:Eubacteria,Cyanobacteria,Anacystis BASE COUNT 370 a 349 c 476 g 292 t 1230 others ORIGIN 1 |--------- --AAAAUGGA GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CGUGCUU--A ACACAUGCAA GUCGAACG|G G--------- --------cu c(uu------ 121 ---------- --cg------ )gag------ ---------- ------CU-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUGA GA-AUCUGC- CUAC------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --CGGGGACA ACAG------ ---------- --------UU G(GAAA)CGA 361 -CUGCUAAUA CC-CGAU-gu ---------- ---------- ---------- --------GC 421 C-------(G AGA---)--- ----GGU--- ---GAAA--- ---------- ---------- 481 CA-------- ------(--- -------UUU A------)-- -------|-- ---UGGCCUG 541 UAGA-UGA|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UG -GG(G-UAAG GG)-CCUACC 601 AA|GGCGACG AU|CAGUAGC UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GCAA)-GC- --GACGGA|G CAACGCCGCG UGGGGGAGGA AGGUU(---U 781 UUG--)GA-C U--GUAAACC CC|UUUU-CU CAGGGAAGAA G--------- (---AaA-G) 841 ---------- UGACG|GU-A CCU-GAGGAA -UAAGCCUC| GGCU-AAUU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGGA|GA GGCAAGCGUU AU-CCGGAAU UAUUGGGC|G 961 UAAAGCGCCU GCAGGCG|GU UAAUCAAG-| UCU-GUUGUC AAAGCGUGGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC UCAU-AC-AG GCAAU--GGA -AAC-U|GAU -UG-A-CUAG AG-UA|UGGU 1141 A-----GGGG UAGCG|GGAA UUCCAGG-UG UAGCG(GUGA AA)UGCGUAG AUA---UCUG 1201 GAAGAACACC AGC---GGC( GAAA)GC|G| CGCUA-CUG| GGCCA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- AACUGACGCU 1321 |CAU-GGACG AAAGCUAGGG GAGCGAAAGG G(AUU-A-GA UAC)-CCCUG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGAAC-- --AC|UA|GG UG-UUGCGUG ---------- --------(- 1441 ------aauc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGCGCAG UGCC-GUAGC (CAAC)GCGU 1561 -UAAGUGUUC |C|GCCUGGG GAGUACGCAC (GCAA)GUUG GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GUAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGUUUG ACA----UC| -CC-CCG--A A------UCU CUUG-----( 1741 GAA-A-)CGA GA-GAG---U G--CC----- ----(UUCG- -----)---- -----GGAG- 1801 ---------- -----|CGGG GAGA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCACG| UUUUUA-G-U 1921 UGCC-AUCA- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --uucagu-- )-------UG 2101 |GGCACUCUA GAGAAACUGC CGGU(GACAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GUGUGGACGA CGUC-AA--G UCAUCAUGCC CCUUACAUCC UGGGCUAC-A 2221 CACGUACUAC AAUGCU--CC GGACAGCGAG AC----GCGA AGCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGUG-A AGCAAAUC-U CCC-AAACCG 2341 GGGCUCAGUU CAGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGGCGG AAUCGCU--- 2401 ---AGUAAU- CGCAGG(UC- -AGC-AU)AC UGCGGUGAAU AC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGAAGUUGG- CCAUGCCCGA 2521 AGUCGUU--- ACCCU-AACC g(-----uuc g------)cG G-AGG-GGG- GC-GCCG-AA 2581 GG-UAGGGCU GAUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACC(GG AA)GGUGUGG 2641 CUGGAUCACC UCCUUU--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS Synech.sp. 2717 bp RNA RNA 21-NOV-1995 DEFINITION Synechocystis sp. str. PCC6803,; 16S rRNA; 23S rRNA; 5S rRNA; carboxyl-terminal processing protease; cytochrome b6; cytochrome b6-f complex subunit 4; ferredoxin; glucose transport protein; hypothetical protein; plastocyanin precursor; ribulose bisphosphate carboxylase large subunit; ribulose bisphosphate carboxylase small subunit; tRNA-Ala; tRNA-Gly; tRNA-Ile; tRNA-Ser. ACCESSION D64000 KEYWORDS 16S rRNA; 23S rRNA; 5S rRNA; carboxyl-terminal processing protease; cytochrome b6; cytochrome b6-f complex subunit 4; ferredoxin; glucose transport protein; hypothetical protein; plastocyanin precursor; ribulose bisphosphate carboxylase large subunit; ribulose bisphosphate carboxylase small subunit; tRNA-Ala; tRNA-Gly; tRNA-Ile; tRNA-Ser. SOURCE Synechocystis sp. str. PCC6803,. ORGANISM Synechocystis sp. REFERENCE 1 (bases 1 to 146271) AUTHORS ., Sugiura,M. and Tabata,S. Kaneko,T., Tanaka,A., Sato,S., Kotani,H., Sazuka,T., Miyajima,N TITLE cyanobacterium Synechocystis sp. strain PCC6803. I. Sequence features in the 1 Mb region from map positions 64% to 92% of the genome Sequence analysis of the genome of the unicellular JOURNAL DNA Res. 2 (4), 153-166 (1995) STANDARD No information COMMENTS Organism information Culture collection: PCC 6803 Sequence information (bases 1 to 2717) Corresponding GenBank entry: D64000 Submitted (30-Aug-1995) to DDBJ by: Satoshi Tabata Dept. of Gene Structure 2 Kazusa DNA Research Institute 1532-3, Yanauchino Kisarazu, Chiba 292 Japan Phone: 0438-52-3933 Email: tabata@kazusa.or.jp Fax: 0438-52-3934. BASE COUNT 384 a 335 c 468 g 302 t 1228 others ORIGIN 1 |--------- --ACAAUGGA GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCCU--A ACACAUGCAA GUCGAACG|G A--------- -------guu c(uu------ 121 ---------- --cg------ )gaac----- ---------- ------UU-- AGU--GGCGG 181 ACGGGUGAGU AA-CACGUGA GA-ACCUAC- CUUC------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GAA------- --UGGGGACA ACAG------ ---------- --------UU G(GAAA)CGA 361 -CUGCUAAUA CC-CAAU-GU ---------- ---------- ---------- --------GC 421 C-------(G AAA---)--- ----GGU--- ---GAAA--- ---------- ---------- 481 GA-------- ------(--- -------UUU A------)-- -------|-- ---UCGUCUG 541 AAGA-UGG|G -CUCGCGU|- CUGAUUA-GC UAGAUGG-UG -GG(G-UAAG AG)-CCUACC 601 AU|GGCAACG AU|CAGUAGC UG|GUCU(GA GA)GGAUGAG CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUACCGCG UGAGGGAGGA AGGUC(---C 781 UUG--)GA-U U--GUAAACC UC|UUUU-AU CAGGGAAGAA G--------- (---UUC--) 841 ---------- UGACG|GU-A CCU-GAUGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGAG|GA UGCAAGCGUU AU-CCGGAAU UAUUGGGC|G 961 UAAAGCGUCC GUAGGUG|GU UAUGCAAG-| UCU-GCCGUU AAAGAAUGGA GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACU CCAU-AG-GA GCGGU--GGA -AAC-U|GCA -AG-A-CUAG AG-UA|CAGU 1141 A-----GGGG UAGCA|GGAA UUCCCAG-UG UAGCG(GUGA AA)UGCGUAG AUA---UUGG 1201 GAAGAACAUC GGU---GGC( GAAA)GC|G| UGCUA-CUG| GGCUG--a-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- AACUGACACU 1321 |GAG-GGACG AAAGCUAGGG UAGCGAAAGG G(AUU-A-GA UAC)-CCCUG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|GG CG-UGGCUUG ---------- --------(- 1441 ------uauc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGAGCCG UGCC-GAAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGCAC (GCAA)GUGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GUAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAAGGCUUG ACA----UC| -CC-UGG--A A------UCC UGCG-----( 1741 GAA-A-)CGU GG-GAG---U G--CC----- ----(UUAG- -----)---- -----GGAG- 1801 ---------- -----|CCAG GAGA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UUUUUA-G-U 1921 UGCC-AUCA- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --uuaagu-- )-------UG 2101 |GGCACUCUA GAGAGACUGC CGGU(GACAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GUGGGGAUGA CGUC-AA--G UCAUCAUGCC CCUUACGCCU UGGGCUAC-A 2221 CACGUACUAC AAUGGU--CG GGACAACGGG CA----GCGA GCUC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GAGU-A AGCGAAUC-C CAUCAAACCC 2341 GGCCUCAGUU CAGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGGAGG AAUCGCU--- 2401 ---AGUAAU- CGCAGG(UC- -AGA-AU)AC UGCGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGGAGCUGG- UCACGCCCGA 2521 AGUCGUU--- ACUCU-AACC -(-----uua g------)-G G-AGG-AGG- GC-GCCG-AA 2581 GG-CAGGGCU AGUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACC(GG AA)GGUGUGG 2641 CUGGAUCACC UCCUUU--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS M.aeru.PCC 2717 bp RNA RNA 11-JAN-191 DEFINITION Microcystis aeruginosa. ACCESSION No information KEYWORDS No information. SOURCE Microcystis aeruginosa. ORGANISM Microcystis aeruginosa. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: AF139299 BASE COUNT 357 a 334 c 460 g 270 t 1296 others ORIGIN 1 |--------- --nnnnnnnn nnn-nn(n-n n)nnnn|nnn nnnnnnnnnA CGC-UGGCGG 61 CGUGCCU--A ACACAUGCAA GUCGAACG|G G--------- -------aau c(uu------ 121 ---------- --cg------ )gauu----- ---------- ------CU-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-AUCUAA- CUUC------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --CGGGGACA ACAG------ ---------- --------UU G(GAAA)CGA 361 -CUGCUAAUA CC-CGAU-GU ---------- ---------- ---------- --------GC 421 C-------(G CGA---)--- ----GGU--- ---GAAA--- ---------- ---------- 481 CC-------- ------(--- -------UAA U------)-- -------|-- ---UGGCCUG 541 GAGA-AGA|G -CUUGCGU|- CUGAUUA-GC UAGUUGG-UG -GG(G-UAAG GG)-CCUACC 601 AA|GGCGACG AU|CAGUAGC UG|GUCU(GA GA)GGAUGAG CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAACGCCGCG UGAGGGAGGA AGGUC(---U 781 UUG--)GA-U U--GUAAACC UC|UUUU-CU CAAGGAAGAA G--------- (---UUC--) 841 ---------- UGACG|GU-A CUU-GAGGAA -UCAGCCUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGGG|GA GGCAAGCGUU AU-CCGGAAU UAUUGGGC|G 961 UAAAGCGUCC GCAGGUG|GU CAGCCAAG-| UCU-GCCGUC AAAUCAGGUU GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACG ACCU-AA-AG GCGGU--GGA -AAC-U|GGC -AG-A-CUAG AG-AG|CAGU 1141 A-----GGGG UAGCA|GGAA UUCCCAG-UG UAGC-(GUGA AA)UGCGUAG AGA---UUGG 1201 GAAGAACAUC GGU---GGC( GAAA)GC|G| UGCUA-CUG| GGCUG--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- AUCUGACACU 1321 |CAG-GGACG AAAGCUAGGG GAGCGAAAGG G(AUU-A-GA UAC)-CCCUG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|GG CG-UGGCUUG ---------- --------(- 1441 ------uauc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGAGCCG UGCC-GAAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGCAC (GCAA)GUGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GUAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAAGACUUG ACA----UG| -UC-GCG--A A------CCC UGGU-----( 1741 GAA-A-)GCU GG-GGG---U G--CC----- ----(UUCG- -----)---- -----GGAG- 1801 ---------- -----|CGCG AACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UUCUUA-G-U 1921 UGCC-AGCA- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --uuaagu-- )-------UG 2101 |GGGACUCUA AGGAGACUGC CGGU(GACAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GUGGGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACGUCU UGGGCGAC-A 2221 CACGUACUAC AAUGGU--CG GGACAAAGGG CA----GCGA ACUC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GAGC-C AGCGAAUC-C CAGCAAACCC 2341 GGCCUCAGUU CAGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGGAGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGC-AU)AC GGCGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGAAGCUGG- UCACGCCCGA 2521 AGUCAUU--- ACCUC-AACC -(-----gca a------)-G G-AGG-GGG- GA-UGCCUAA 2581 GG-CAGGGCU AGUGACUGGG GUGAAGUCGU AACAAGGUnn nnnnnnn(nn nn)nnnnnnn 2641 nnnnnnnnnn nnnnnn--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.P.wick 2717 bp RNA RNA 17-JAN-1998 DEFINITION Chloroplast Prototheca wickerhamii.; 16S ribosomal RNA; 23S ribosomal RNA; 30S ribosomal protein S4; chloroplast; rps4 gene; rrn16 gene; rrn23 gene; trnA gene; tRNA-Ala (UGC); tRNA-Asn (GUU); tRNA-Ile (GAU); trnI gene; trnN gene. ACCESSION AJ2228 2 KEYWORDS 16S ribosomal RNA; 23S ribosomal RNA; 30S ribosomal protein S4; chloroplast; rps4 gene; rrn16 gene; rrn23 gene; trnA gene; tRNA-Ala (UGC); tRNA-Asn (GUU); tRNA-Ile (GAU); trnI gene; trnN gene. SOURCE Chloroplast Prototheca wickerhamii. ORGANISM Chloroplast Prototheca wickerhamii. REFERENCE 1 (bases 1 to 5001) AUTHORS Knauf,U., Wolff,G., Kueck,U. and Hachtel,W. TITLE 5.0 kb part of the ribosomal-RNA genecluster from the plastid DNA of the colourless alga Prototheca wickerhamii JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 5001) AUTHORS Knauf,U. TITLE Direct Submission JOURNAL Submitted (23-DEC-1997) Knauf U., Molekulare Biochemie, Botanisches Institut der Universitaet Bonn, Kirschallee 1 53115 Bonn FRG STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: AJ222802 BASE COUNT 444 a 305 c 419 g 365 t 1184 others ORIGIN 1 |--------- -aaaacga-A GAG-UU(U-G A)UCCU|GGC UCAGGAUAAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUUGUACG|A A--------g gua-uuuauc u(uu------ 121 ---------- --cg------ )agcuaaa-- -uauac---- ------ug-- AGU--AGCGG 181 ACGGGUGAGU AA-CACGUAA GA-AUCUAC- CUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------U 301 GGA------- --GAGGGAUA ACUA------ ---------- --------CU G(GAAA)CGG 361 -UAGCUAAUA CC-UUAU-AU ---------- ---------- -------U-- --------GC 421 U-------(G AGA---)--- ----AGU--- ---GAAA--- ---------- ---------- 481 AAU------- ------(--- -------GUA A------)-- -------|-- --AUUGCCAG 541 AAGA-UGA|G -CUUGCGC|- CUGAUUA-GC UAGUUGG-UG -UG(G-UAAC UG)-CAUACC 601 AA|GGCAAUG AU|CAGUAGC UG|UUCU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGAGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGCCGCG UGAAGGAUGA CGGCC(---U 781 AUG--)GG-U U--GUAAACU UC|UUUU-CU CAGAAAAGAU UA-------- (--------) 841 ---------A UGACG|GU-A UCU-GAGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUU|GU UUAAAAAG-| UAU-UCUGUC AAAAAUUAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CUAU-AC-AG GCAGA--AUA -AAC-U|UUU -AA-G-CUAG AG-UU|UGGU 1141 A-----GAGG CAGAG|GGAA UUCCCGG-UG GAGCG(GUGA AA)UGCGUAG AUA---UCGG 1201 GAGGAACACC AAA---GGC( GAAG)GC|A| CUCUG-CUG| GGCCA--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACACU 1321 |GAG-AGACG AAAGCGAGGG GAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 C-GCUGUAAA CGAUGGAU-- --AC|UA|GG UG-UUGGGUG ---------- --------(- 1441 ------uauc aaaaa)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CAUUCAG UAUC-GUAGC (UAAC)GCAU 1561 -UAAGUUUCC |C|GCCUGGG GAGUAUGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGAACCC-GC ACA------- AUUGGU|GGG GUACGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGAUUUG ACA----UG| -UC-AUU--U G------uuu cuuc------ 1741 aac-----uu aa-uac---u u--uaauuug uuuu(aagua -----)gaaa caua-aaaa- 1801 ---------- -----|AAUG AACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(UUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUU| UUUUGA-A-U 1921 UGCUu----- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ggggcau(ua u)augccuuu uuacag---( ---------- )--------- 2101 |AGGAAAUUC AAAAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUAUAUCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGA--CG UAACAAAGAG AA----GCUA CUUC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GAAC-A AGCUAAUC-U CAA-AAAUAC 2341 GUUCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGUUGG AAUCAAU--- 2401 ---AGUAAU- CGCAGG(UC- -AGCCAC)AC UGCGGUGAAU AC--GUU--- ---------- 2461 -------UCC GGGUUUUGCA CACACCGCCC GUCACACCA- cggaaauug- cuacgcccua 2521 aaucauu--- acccu-aacc --auuc--ug u------)-G G-AGG-GGG- AU-GCCU-AA 2581 GG-CGGGGCU GGUAACUGGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC U-------|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.P.zopf 2717 bp RNA RNA 11-JAN-191 DEFINITION Prototheca zopfii. ACCESSION No information KEYWORDS No information. SOURCE Prototheca zopfii. ORGANISM Prototheca zopfii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X74006 ID PZ18SRNA standard; circular DNA; PLN; 1515 BP. XX AC X74006; XX DT 15-JUL-1993 (Rel. 36, Created) DT 15-JUL-1993 (Rel. 36, Last updated, Version 1) XX DE P.zopfii plastid gene for 18S small subunit rRNA XX KW 16S ribosomal RNA; small subunit. XX OS Prototheca zopfii OC Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; OC Chlorococcales. XX OG Plastid XX RN [1] RP 1-1515 RA Huss V.A.R.; RT ; RL Submitted (09-JUL-1993) on tape to the EMBL Data Library by: RL V.A. Huss, Inst fuer Botanik & Pharmazeutische Biol, Universitaet RL Erlangen, Staudtstr. 5, 91058 Erlangen, FRG XX RN [2] RP 1-1515 RA Huss V.A.R., Gemple B.; RT ; RL Unpublished. XX FH Key Location/Qualifiers FH FT primer_bind 1..30 FT /note="PCR amplification 5'-primer" FT rRNA 1..1515 FT /note="16S small subunit" FT source 1..1515 FT /organism="Prototheca zopfii" FT /strain="SAG 263-1a" FT /note="plastid" FT primer_bind complement(1493..1515) FT /note="PCR amplification 3'-primer" XX SQ Sequence 1515 BP; 506 A; 234 C; 331 G; 440 T; 4 other; BASE COUNT 506 a 234 c 331 g 440 t 1206 others ORIGIN 1 |--------- UGCCUGCAGA GAG-UU(Y-G A)UCCU|GGC UCAGGAUGAA CGC-UUGUGG 61 UAGGCUUU-A ACACAUGCAA GUCG-ACG|A U--------- -uu-auuaaa u(uu------ 121 ---------- --uu------ )auuuaau-- -a-------- ------AA-- AGU--GGCGA 181 ACGGGUGAGU AA-UACAUAA GA-ACUUAC- UUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------U 301 GGA------- --UAGGUAUA GUUU------ ---------- --------AA A(GAAA)UUU 361 -AAAGUAAUC CC-UAAU-AU ---------- ---------- -------U-- --------GC 421 UUUUA---(u uuu---)--- UAAAAGU--- ---GAA---- ---------- ---------- 481 ---------- ------(--- ---------- -------)-- -------|-- -----ACCGA 541 GAAA-AAG|G -CUUAUGU|- CUGAUUA-GC UAGUUGG-UA -AG(A-UAAU AG)-CUUACC 601 AA|GGCGACA AU|CAGUAGU UG|GUCU(GA GA)GGAUGAU CAGC|CACAU UGGGA(CUGA 661 GAUACG)GCC CAAA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGAGG-A AUAUUCCG-C 721 AAU-GAGC-( -GAAA)-GCU U-GACGGA|G CCAUACCACG UGACCGAAGA AGGC-(---U 781 AA---)-G-U C--GUAAAGG UC|UUUU-CU UAGAAAUGAA AA-------- (--------) 841 -------aAA UGACA|GU-A UCU-AAGGAA -UAAGUAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACAGAG|GA UGCAAGCGUU AU-CCGGAUU UACUGGGC|G 961 UAAAGAGUCU GUAGGUU|GU UUUAAAAG-| UCA-AAUGUU AAAGAUUAAG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC UUAA-AA-AA GUGUU--UGA -AAC-U|UUA -AA-A-CUAG AG-AU|CAAU 1141 A-----GAGG UAGAG|GGUA UUUCUGG-UG AAGCG(GUGA AA)UGCUUAG AUA---UCAG 1201 AAAGACCAUC AAA---GGC( GAAG)GC|A| CUCUG-CUG| GGUUG--C-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UUCUGACACU 1321 |GAG-AGACG AAAGCUAGGG UAGCAAAUAG G(AUU-A-GA UAC)-CCUAG UAG-|UC-CU 1381 A-GCUGUAAA CGAUGGGA-- --AC|UA|GA UA-UUAAA-- ---------- --------(- 1441 -------gaa uuu--)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|---UUUAA UAUC-UAAGC (UAAC)GCAU 1561 -UAAGUUCCC |C|GCCUGGG AAGUACAGUC (GCAA)GACC GAAACUUAAA GGAUUUGGCG 1621 GGAGCUU-AC ACA------- AUUGGU|GGA GCAUGUGGUU UAAUUCG-(A UGAUACA)CG 1681 AAGAACCUUA CCGAGGCUUG ACA----UA| -AC-UAU--U U------AAU UAUU-----( 1741 UUU-U-)AAU AA-aaa---u a--au----- ----(aua-- -----)---- -----auua- 1801 uguaaacuaa uuaca|AUAG U-UA|C|AGG UGGUGCAUG| ---|GUUGUC A|AG-UUCGU 1861 |GUU(GUGA) AACAUUGAG( UUCAGU)CUC GUAACGGACG GAACCCUAA| UUCUUU-Auu 1921 auaau-uauu ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --aaauuuua )------gau 2101 |uuuuuauga agaauacgua cuuu(----- ----)uuaau aauacuuuag uuauuauuau 2161 ggguAGGAAG CCUAGGAUUU CGAC-AA--A UCAUUAUGCU CCUUACGCCU CGGGCUAC-A 2221 CAUGUGCUAC AAUGGU--UA ACUC----aa ua-------- ---------- ---------- 2281 ----(--uau uau-)----- ---------- ---------- -----uau-u uuC-AAUGUU 2341 AAUCAAAGUU CGAAUUAUAA AC(--UGAAA CUC)GUUUAU AUGAAGUAGG AAUCAAU--- 2401 ---AGUAAU- CGCAAG(UC- -AGCUAU)AU UGCGGUGAAA CG---UC--- ---------- 2461 -------ACU GAGCUCUGUA CAGACCGCCC GUCACACCUU GGAAAUUGA- UUUUAUUUAA 2521 AAAUAAU--- UUAUAcaaac a(uuu--gaa a---aaa)ug g-cAA-AAA- UU-AUUC-AA 2581 RA-UGAAAUG GAUAACUAAG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGNGG 2641 NUGGAUCACC UCCUUG--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.C.euga 2717 bp RNA RNA 11-JAN-191 DEFINITION Chlamydomonas eugametos chloroplast SSU rRNA. ACCESSION No information KEYWORDS No information. SOURCE Chlamydomonas eugametos chloroplast SSU rRNA. ORGANISM Chlamydomonas eugametos chloroplast SSU rRNA. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X15850 BASE COUNT 416 a 311 c 428 g 326 t 1236 others ORIGIN 1 |--------- ~ACCUAUGAU GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGAACG|G A--------- ----cugaca g(gc------ 121 ---------- --aa------ )cuguuag-- ---------- ------uuu- AGU--GGCGG 181 ACGGGUGCGU AA-CGCGUAA GA-AUCAAC- AUUC------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------U 301 GGU------- --GGGGGAUA AUAA------ ---------- --------CG G(GAAA)CUG 361 -UUGGUAAUA CC-GCAU-AA ---------- ---------- -------A-- --------AC 421 U-------(G AGG---)--- ----AGU--- ---UAAA--- ---------- ---------- 481 caau------ ------(--- -------GAA A------)-- -------|-- -gUUGGCCAG 541 GAAA-CGA|G -CUUGCGU|- CUGAUUA-GC UAGUUGG-UA -AG(G-UAAA GG)-CUUACC 601 AA|GGCCACG AU|CAGUAGC UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGAA(CUGA 661 GACACG)GUC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGAGG-A AUUUUUCG-C 721 AAU-GGGC-( -GCAA)-GCC U-GACGAA|G CAAUGCCGCG UGAGGGAAGA AGGGC(---C 781 GUG--)GC-U C--GUAAACC UC|UUUU-UU CAGAGAAGAA UA-------- (--------) 841 --------AA UGACG|GU-A UCU-GAAGAA -UAAGCUCC| GGCU-AACU- AUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACAUGG|GG AGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GU UGAAAAAG-| UCG-ACUGUC AAAUCCCAAG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC UUGG-UC-CG GCAGU--CGA gUAC-U|UUU -UA-A-CUUG AG-UG|UGGU 1141 A-----GAGG UAGAG|GGAA UCCCUAG-CG UAACA(GUGA AA)UGUGUAG AUU---UUAG 1201 GGAGAACACC AGC---GGC( GAAG)GC|G| CUCUA-CUG| GGCCA--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- GACUGACACU 1321 |GAG-AGACG AAAGCUAAGG GAGCGAAUAG G(AUU-A-GA UAC)-CCUAG UAG-|UC-UU 1381 A-GCUGUAAA CGAUGGAA-- --AC|UA|AG UG-CUGC--- ---------- --------(- 1441 -------cga au---)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|----GCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUUUCC |C|GCCUGGG GAGUAUGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AUCAGU|GGA UUAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGUUUG ACA----UG| -CU-CAA--A A------AGA CUCA-----( 1741 GAA-A-)UGG GU-AAG---U G--CCA---- ----(GAAA- -----)---- ----UGGAA- 1801 ---------- -----|UUGA GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCG(UUGA) CGUGUAUGG( UUAAGU)CCU GCAACGAGCG CAACCCUCG| UCCACA-G-U 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --uaaauu-- )--------- 2101 |----CUCUG UGGAUACUGC CGGU(G-CAA ----)----- ---------- ---------A 2161 CUGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACACCC UGGGCGAC-A 2221 CACGUAAUAC AAUGGU--UG GGACAAUCAG UA----GCUU AGCU------ ---------- 2281 ----(----G CGA-)----- ---------- ----AGUU-U GGCAAAUC-U GAG-AAACUC 2341 AACCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGUCGG AAUUGAU--- 2401 ---AGUAAU- CGCCAA(UC- -AGCCAU)GU GGCGGUGAAU AC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CAAACCGCCC GUCACACCAA GAAAGAUUG- UAGUCGGCAA 2521 AAUCCUU--- AGCUU-AACC -(-----gaa a------)-G G-AGG-GCG- GG-GCUU-AC 2581 CC-UAUUACC AUUGAUCAUG GUGAAGUCGU AACAAGGUAG GGGUUCU(GG AA)GGAGUCC 2641 CUGGAUCACC UCCUUC--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.C.moew 2717 bp RNA RNA 11-JAN-191 DEFINITION Chlamydomonas moewusii. ACCESSION No information KEYWORDS No information. SOURCE Chlamydomonas moewusii. ORGANISM Chlamydomonas moewusii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X15850 LOCUS MCSSU 2948 bp DNA PLN 27-JUN-1991 DEFINITION C.moewusii chloroplast small subunit (SSU) rRNA gene ACCESSION X15850 KEYWORDS rRNA; small subunit rRNA. SOURCE Chlamydomonas moewusii ORGANISM Chloroplast Chlamydomonas moewusii Eukaryota; Plantae; Thallobionta; Chlorophycota; Chlorophyceae; Volvocales; Chlamydomonadaceae. REFERENCE 1 (bases 1 to 2948) AUTHORS Durocher,V., Gauthier,A., Bellemare,G. and Lemieux,C. TITLE An optional group I intron between the chloroplast small subunit rRNA genes of Chlamydomonas moewusii and C. eugametos JOURNAL Curr. Genet. 15, 277-282 (1989) STANDARD full automatic FEATURES Location/Qualifiers source 1..2948 /organism="Chlamydomonas moewusii" /chloroplast exon <1..1357 /number=1 /product="Small Subunit rRNA" /gene="SSU rRNA" exon 1760..>2948 /number=2 /product="Small Subunit rRNA" /gene="SSU rRNA" intron 1358..1759 /number=1 /cons_splice=(5'site:NO,3'site:NO) mRNA join(868..1357,1760..2751) /gene="SSU rRNA" prim_transcript <1..>2948 /gene="SSU rRNA" repeat_unit 34..54 /rpt_type=INVERTED /note="IR1" repeat_unit 186..206 /rpt_type=INVERTED /note="IR1" repeat_unit 1503..1523 /rpt_type=INVERTED /note="IR1" repeat_unit 1675..1695 /rpt_type=INVERTED /note="IR1" repeat_unit 2915..2935 /rpt_type=INVERTED /note="IR1" repeat_unit 85..105 /rpt_type=INVERTED /note="IR2" repeat_unit 145..151 /rpt_type=INVERTED /note="IR3" repeat_unit 1638..1656 /rpt_type=INVERTED /note="IR4" repeat_unit 2840..2860 /rpt_type=INVERTED /note="IR5" repeat_unit 217..231 /rpt_type=DIRECT /note="D1" repeat_unit 232..246 /rpt_type=DIRECT /note="D1" repeat_unit 247..261 /rpt_type=DIRECT /note="D1" repeat_unit 515..520 /rpt_type=DIRECT /note="D2" repeat_unit 521..526 /rpt_type=DIRECT /note="D2" repeat_unit 527..532 /rpt_type=DIRECT /note="D2" repeat_unit 533..538 /rpt_type=DIRECT /note="D2" repeat_unit 539..544 /rpt_type=DIRECT /note="D2" repeat_unit 545..560 /rpt_type=DIRECT /note="D2" repeat_unit 561..565 /rpt_type=DIRECT /note="D2" CDS join(868..1357,1760..2751) /product="Small Subunit rRNA" /gene="SSU rRNA" /note="30 stops when translation attempted, frame 1, code 0" BASE COUNT 899 a 620 c 769 g 660 t ORIGIN BASE COUNT 418 a 311 c 427 g 326 t 1235 others ORIGIN 1 |--------- -ACCUAUGAU GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGAACG|G A--------- ----cugaca g(gc------ 121 ---------- --aa------ )cuguuag-- ---------- ------uuu- AGU--GGCGG 181 ACGGGUGCGU AA-CGCGUAA GA-AUCAAC- AUUC------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------U 301 GGU------- --GGGGGAUA AUAA------ ---------- --------CG G(GAAA)CUG 361 -UUGGUAAUA CC-GCAU-AA ---------- ---------- -------A-- --------AC 421 U-------(G AGG---)--- ----AGU--- ---UAAA--- ---------- ---------- 481 CAAU------ ------(--- -------gaa a------)-- -------|-- -GUUGGCCAG 541 GAAA-CGA|G -CUUGCGU|- CUGAUUA-GC UAGUUGG-UA -AG(G-UAAA GG)-CUUACC 601 AA|GGCCACG AU|CAGUAGC UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGAA(CUGA 661 GACACG)GUC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGAGG-A AUUUUUCG-C 721 AAU-GGGC-( -GCAA)-GCC U-GACGAA|G CAAUGCCGCG UGAGGGAAGA AGGGC(---C 781 GUG--)GC-U C--GUAAACC UC|UUUU-UU CAGAGAAGAA UA-------- (--------) 841 --------AA UGACG|GU-A UCU-GAAGAA -UAAGCUCC| GGCU-AACU- AUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACAUAG|GG AGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GU UGAAAAAG-| UCG-ACUGUC AAAUCCCAAG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC UUGG-UC-CG GCAGU--CGA gUAC-U|UUU -UA-A-CUUG AG-UG|UGGU 1141 A-----GAGG UAGAG|GGAA UCCCUAG-CG UAACA(GUGA AA)UGUGUAG AUU---UUAG 1201 GGAGAACACC AGC---GGC( GAAG)GC|G| CUCUA-CUG| GGCCA--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- GACUGACACU 1321 |GAG-AGACG AAAGCUAAGG GAGCGAAUAG G(AUU-A-GA UAC)-CCUAG UAG-|UC-UU 1381 A-GCUGUAAA CGAUGGAA-- --AC|UA|AG UG-CUGC--- ---------- --------(- 1441 -------cga au---)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|----GCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUUUCC |C|GCCUGGG GAGUAUGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AUCAGU|GGA UUAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGUUUG ACA----UG| -CU-CAA--A A------AGA CUCA-----( 1741 GAA-A-)UGG GU-AAG---U G--CCA---- ----(gaaa- -----)---- ----UGGAA- 1801 ---------- -----|UUGA GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCG(UUGA) CGUGUAUGG( UUAAGU)CCU GCAACGAGCG CAACCCUCG| UCCACA-G-U 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --uaaauu-- )--------- 2101 |----CUCUG UGGAUACUGC CGGU(G-CAA ----)----- ---------- ---------A 2161 CUGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACACCC UGGGCGAC-A 2221 CACGUAAUAC AAUGGU--UG GGACAAUCAG UA----GCUU AGCU------ ---------- 2281 ----(----G CGA-)----- ---------- ----AGUU-U GGCAAAUC-U GAG-AAACUC 2341 AACCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGUCGG AAUUGAU--- 2401 ---AGUAAU- CGCCAA(UC- -AGCCAU)GU GGCGGUGAAU AC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CAAACCGCCC GUCACACCAA GAAAGAUUG- UAGUCGGCAA 2521 AAUCCUU--- AGCUU-AACC -(-----gaa a------)-G G-AGG-GCG- GG-GCUU-AC 2581 CC-UAUUACC AUUGAUCAUG GUGAAGUCGU AACAAGGUAG GGGUUCU(GG AA)GGAGUCC 2641 CUGGAUCACC UCCUUCA-|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.C.pall 2717 bp RNA RNA 11-JAN-191 DEFINITION Chlamydomonas pallidostigmatica. ACCESSION No information KEYWORDS No information. SOURCE Chlamydomonas pallidostigmatica. ORGANISM Chlamydomonas pallidostigmatica. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: L39865 LOCUS CRECPCPRG 4153 bp DNA PLN 01-JUN-1995 DEFINITION Chlamydomonas pallidostigmatica chloroplast small subunit ribosomal RNA gene, partial CDS. ACCESSION L39865 KEYWORDS 16S-like ribosomal RNA; chloroplast; group I intron; intron-encoded DNA endonuclease; small subunit ribosomal RNA. SOURCE Chlamydomonas pallidostigmatica DNA. ORGANISM Chlamydomonas pallidostigmatica Eukaryotae; mitochondrial eukaryotes; Chlorophyta/Embryophyta group; Chlorophyta; Chlorophyceae; Volvocales; Chlamydomonadaceae; Chlamydomonas. REFERENCE 1 (bases 1 to 4153) AUTHORS Turmel,M., Mercier,J.-P., Cote,V., Otis,C. and Lemieux,C. TITLE The site-specific DNA endonuclease encoded by a group I intron in the Chlamydomonas pallidostigmatica chloroplast small subunit rRNA gene introduces a single-strand break under low Mg+2 concentration JOURNAL Unpublished (1995) COMMENT NCBI gi: 845296 FEATURES Location/Qualifiers source 1..4153 /organism="Chlamydomonas pallidostigmatica" /sequenced_mol="DNA" exon 1..461 /partial /number=1 primer_bind 1..19 /note="5' primer" prim_transcript 1..4153 intron 462..1872 /note="group I intron containing an internal open reading frame; does not fit consensus" /number=1 /cons_splice=(5'site:no,3'site:no) CDS 719..1423 /note="NCBI gi: 845297" /codon_start=1 /product="site-specific DNA endonuclease I-CpaII" /translation="MTDSKSRNNNNFLSNNLLPLTDDEKALIAGTLLGDAHIQKRGDS YRLKIAHGLDHEELVVWKYNRLIRLCQTTQPPRVETYSTKLKSGVLPQGVVFYTSSGK YLKETYDLFYKQTADGRRVKTITQELIDSLPKHPLVLAAFFMDDGSVRSDCYSGKIAT PGFAGKEESQLLCNYLHSWDVQANVVAHKKANNQYYIGLPAKTFGRFINIIEPYVREV PALCYKLNESRKPRND" exon 1873..2157 /number=2 intron 2158..3446 /note="group I intron containing an internal open reading frame; does not fit consensus" /number=2 /cons_splice=(5'site:no,3'site:no) CDS 2604..3392 /note="NCBI gi: 845298" /codon_start=1 /function="unknown" /product="putative protein of 262 amino acids" /translation="MAQVPLTEIEKSVLCGTILGDASFAISDGYKNARFQSNHSTNQL TWFFWKFFVILKDFTKPTGLIYSEPSGKQLINQTSEASFFEPGEDSLEIPFGKLKIAS LADAKLTELHSVICNKNRKTIERSWLNHMNNYFLMTVWLDDGSMTSGRQGILSFNSYP ADQQQIFRDYLLQVWGIETRLQDTGQKMQNGQPNCRISIKDQENLLNLLRYIAPVVPV REMLYKVCFMAESNLSLSQRWKTEVKGLVRPEFAEEIDKIYAKM" exon 3447..4153 /partial /number=3 primer_bind 4133..4153 /note="3' primer" BASE COUNT 1286 a 813 c 998 g 1056 t ORIGIN BASE COUNT 405 a 306 c 427 g 315 t 1264 others ORIGIN 1 |--------- nnnnnnnnnn nnG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGAACG|A U--------- -uu-ucuuua u(uu------ 121 ---------- --uu------ )auaaagg-- -aau------ ------gu-- AGU--GGCGC 181 ACGGGUGCGU AA-CGCGUAA GA-ACUUAC- CUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------C 301 GGA------- --GGGGGAUA ACAU------ ---------- --------UG G(GAAA)CCG 361 -CUGCUAAUA CC-CCGU-AA ---------- ---------- -------C-- --------GC 421 U-------(G AGA---)--- ----AGU--- ---GAAA--- ---------- ---------- 481 gguc------ ------(--- -------uua g------)-- -------|-- -gaccGCCGA 541 AAGA-GGG|G -CUUGCGU|- CUGAUUA-GC UAGUUGGUGG -AG-G-UAAC GG)-CUCCCC 601 AA|GGCCACG AU|CAGUAGC UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGAGG-A AUUUUCCA-C 721 AAU-GGGC-( -GAAA)-GCC U-GAUGGA|G CAAUGCCGCG UGGAGGAAGA AGGCC(---C 781 GUG--)GG-U C--GUAAACU CC|UUUU-CU CAGAGAAGAA GA-------- (--------) 841 --------uC UGACG|GU-A UCU-GAGGAA -UAAGCCCC| GGCU+AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACAGAG|GG GGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUUC GUAGGUG|GC UCGUGAAG-| UCU-ACUGUC AAAAAUCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC UUGA-GC-AG GCAGU--GGA -AAC-U|CAU -GA-G-CUUG AG-UG|CGGU 1141 A-----GAGG UAGAG|GGAA CUCUUUA-UG GAGCG(GUGA AA)UGCGUAG AGA---UAAG 1201 GAGGAACACC AGC---GGC( GAAG)GC|G| CUCUA-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- GACUGACACU 1321 |GAG-GGACG AAAGCUAAGG GAGCGAAUAG G(AUU-A-GA UAC)-CCUAG UAG-|UC-UU 1381 A-GCUGUAAA CGAUGGAA-- --AC|UA|AG UG-CUGC--- ---------- --------(- 1441 -------cga aa---)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|----GCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUUUCC |C|GCCUGGG GAGUAUGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGAGGU|GGA UUAUGUGGAU UAAUUCG-(A UGAUACA)CG 1681 AAGAACCUUA CCAGGGUUUG ACA----UG| -CC-AAG--A A------UCU CCUA-----( 1741 GAA-A-)UGG GA-GAG---U G--CCU---- ----(GAAA- -----)---- ----AGGAA- 1801 ---------- -----|CUUG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GAU(UUGA) AUUGUAUGG( UUAAGU)CCC AUAACGAGCG CAACCCUUG| UCCUUA-U-U 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --uaaagaau )--------- 2101 |----CUAUA AGGAGACUGC CAGC(u-agc ----)----- ---------- ---------G 2161 CUGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACACCC UGGGCUUC-A 2221 CACGUAAUAC AAUGGC--UA AGACAACCAG AA----GCAA AACU------ ---------- 2281 ----(----G CGA-)----- ---------- ----AGU--G AGCGAAUC-U GUU-AAACUU 2341 AGCCUCAAUU CGGAUUGUAG GC(--UGCAA CUC)GACUAC AUGAAGCCGG AAUCUCU--- 2401 ---AGUAAU- CGUGGG(UC- -AGCUAU)AC CACGGUGAAU AC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACAGGCA GAAAGCGGA- UUUGUCUCUA 2521 AACAAUG--- AGUCC-AACC c(cuga-uuu u--ucag)gG G-AGG-AUA- GU-UGCU-AA 2581 AG-AUGAGUC UGUGAAUUAU CUGAAGUCGU AACAAGGUAG GGnnnnn(nn nn)nnnnnnn 2641 nnnnnnnnnn nnnnnn--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.C.rein 2717 bp RNA RNA ~?~???? DEFINITION chloroplast,Chlamydomonas reinhardii. ACCESSION No information KEYWORDS No information. SOURCE chloroplast,Chlamydomonas reinhardii. ORGANISM chloroplast,Chlamydomonas reinhardii. REFERENCE 1 (bases 1 to 5001) AUTHORS No information JOURNAL Dron,Rahire,Rochaix NAR 10:7609(1982) STANDARD No information COMMENTS Organism information Culture collection: ???? Sequence information (bases 1 to 2717) Corresponding GenBank entry: J01395 Phylo:Eubacteria,Cyanobacteria,chloroplast BASE COUNT 382 a 334 c 451 g 307 t 1243 others ORIGIN 1 |--------- -AUCCAUGGA GAG-UU(U-G A)UCCU|GGC UCAGGACGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGAACG|A G--------- -------caa a(gc------ 121 ---------- --aa------ )uuug----- ---------- ------ugu- AGU--GGCGA 181 ACGGGUGCGU AA-CGCGUAA GA-ACCUAC- CUAU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------C 301 GGA------- --GGGGGAUA ACAU------ ---------- --------UG G(GAAA)CUG 361 -UUGCUAAUA CC-CCAU-AC ---------- ---------- -------A-- --------GC 421 U-------(G AGG---)--- ----AGU--- ---GAAA--- ---------- ---------- 481 GGU------- ------(--- -----G-AAA a------)-- -------|-- --ACCgCCGA 541 UAGA-GGG|G -CUUGCGU|- CUGAUUA-GC UAGUUGGUGG -GG(G-UAAC GG)-CCUCCC 601 AA|GGCCACG AG|CAGUAGC UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGAGG-A AUUUUUCG-C 721 AAU-GGGC-( -GCAA)-GC- --GACGGA|G CAAUGCCGCG UGCAGGAAGA AGGCC(---U 781 GUG--)GG-U C--GUAAACU GC|UUUU-CU CAGAGAAGAA G--------- (---UUC--) 841 ---------- UGACG|GU-A UCU-GAGGAA -UAAGCACC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACAGAG|GG UGCAAGCGUU GU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UCGUAAAG-| UCU-AAUGUC AAAUACCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC UUGG-AC-CG GCAUU--GGA GUAC-U|CAC -GA-G-CUUG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUCCAUG-UG GAGCG(GUGA AA)UGCGUAG AGA---UAUG 1201 GAGGAACACC AGU---GGC( GAAG)GC|G| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- AACUGACACU 1321 |GAG-AGACG AAAGCUGGGG GAGCGAAUAG G(AUU-A-GA UAC)-CCUAG UAG-|UC-CC 1381 A-GCCGUAAA CUAUGGAG-- --AC|UA|AG UG-CUGC--- ---------- --------(- 1441 -------cgc aa---)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|----GCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUCUCC |C|GCCUGGG GAGUAUGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GG-ACC--GC ACA------- AGCGGU|GGA UUAUGUGGAU UAAUUCG-(A UACAACG)CG 1681 AAGAACCUUA CCAGGGUUUG ACA----UG| -UC-AAG--A A------CCU CUCA-----( 1741 GAA-A-)UGG GA-GGG---U G--CC----- ----(CUAA- -----)---- -----cGGA- 1801 ---------- -----|CUUG AACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCU(GUGA) AGUGUAUAG( UUAAGU)CUC AUAACGAGCG CAACCCUCG| UCUUUA-G-U 1921 UGCC------ ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --auuu---- )--------- 2101 |GGUUCUCUA AAGAGACUGC CAGU(G-UAA ----)----- ---------- ---------G 2161 CUGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACAUCC UGGGCUUC-A 2221 CACGUAAUAC AAUGGU--UG GGACAAUCAG AA----GCGA -CUC------ ---------- 2281 ----(----G UGA-)----- ---------- ----GAGC-U AGCGGCUC-U GUU-AAACCC 2341 AACCUCAGUU CGGAUUGUAG GC(--UGCAA CUC)GCCUAC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCAG(UC- -AGCuAU)AU GGCGGUGAAU AC--GUU--- ---------- 2461 -------CCC GGGUCUUGUA CACACCGCCC GUCACACCAU GGAAGCUGG- UUCUGCUCCA 2521 AGUCGUU--- ACCCU-AACC -(-----uuc g------)-G G-AGG-GGG- GC-GCCU-AA 2581 AG-CAGGGCU AGUGACUAGG GUGAAGUCGU AACAAGGUAG GGCUACU(GG AA)GGUGGCC 2641 CUGGCUCACC UCCUUC--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.M.squa 2717 bp RNA RNA 17-JAN-1998 DEFINITION Mantoniella squamata.; 16S rRNA gene; 16S small subunit ribosomal RNA; tRNA-Ala; tRNA-Ile. ACCESSION X90641 KEYWORDS 16S rRNA gene; 16S small subunit ribosomal RNA; tRNA-Ala; tRNA-Ile. SOURCE Mantoniella squamata. ORGANISM Mantoniella squamata. REFERENCE 1 (bases 1 to 1688) AUTHORS Kranz,H.D. and Huss,V.A.R. JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1688) AUTHORS Huss,V.A.R. TITLE Direct Submission JOURNAL Submitted (09-AUG-1995) V.A.R. Huss, Inst.f. Botanik und Pharmazeut. Biologie, Univ. Erlangen, Staudtstr. 5, D- 91058 Erlangen, FRG STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X90641 BASE COUNT 408 a 316 c 438 g 332 t 1223 others ORIGIN 1 |--------- UGCCUGCAGA GAG-UU(Y-G A)UCCU|GGC UCAGGAGGAA CGC-UGGCAG 61 CGUGCAU--A ACACAUGCAA GUCGAACG|A ---------- uga-aagauu c(uu------ 121 ---------- --cgg----- )gaauuug-- -ga------- ------ag-- aGU--GGCGA 181 ACGGGUGAGG AA-CACGUAA GA-AUCUGC- CCCU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------C 301 GGU------- --CGGGGACA ACUC------ ---------- --------UU G(GAAA)CGA 361 -GAGCUAAUA CC-CGAU-AU ---------- ---------- ---------- --------GC 421 U-------(G UGG---)--- ----AGU--- ---GAAA--- ---------- ---------- 481 ga-------- ------(--- -------auu -------)-- -------|-- ---UCGCCGA 541 GGGA-UGA|U -CUUGCGU|- CUGAUUA-GC UAGUUGG-UG -UG(G-UAAU GG)-CAUACC 601 AA|GGCGACG AU|CAGUAGC UG|GUCU(GA GA)GGAUGAA CAGC|CACAU UGGAA(CUGA 661 GACACG)GUC CAAA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGAC-( -GAAA)-GUC U-GACGGA|G CGACGCUGCG UGAAGGAUGA CGGCC(---C 781 GCG--)GG-U U--GUAAACU UC|UUUU-CU CGAAGAAGAA UC-------- (--------) 841 --------AA UGACG|GU-A UUC-GAGGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACGGAG|GA UGCAAGUGUU AU-UCGGAAU GAUUGGGC|G 961 UAAAGAGUCU GUAGGCG|GU AUAGAAAG-| UCU-UUUGUU AAAUGCCUCG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC GAGA-UC-CA GCAAA--GGA -AAC-U|UCU -AU-A-CUUG AG-GA|AAGU 1141 A-----GAGG UACAG|GGAA UUCCCGG-UG GAGCG(GUGA AA)UGCGUAG AUA---UCGG 1201 GAGGAACACC AAUau-GGC( GAAG)GC|A| CUGUA-CUG| GGCuu--u-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UCCUGACGCU 1321 |AAG-AGACG AAAGCUAAAG GAGUGAUUAG G(AUU-A-GA UAC)-CCUAG UAA-|UU-UU 1381 A-GCCGUAAA CGAUGGAA-- --AC|U---- ca-cugc-cg ---------- ------ag(- 1441 ------cgaa auaca)a--- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-cgagcgg uggu-CAAGC (UAAC)GCGU 1561 -GAAGUUUCC |C|GCCUGGG GAUUACGCUU (GCAA)AAGU GAAACUCAAA GGAAUUGACG 1621 GGGACCC-GC ACA------- AGCGGU|GGA GUAUGUGGUU UAAUUCG-(A UGCAACA)CG 1681 AAGAACCUUA CCAGGGUUUG AAA----UC| -AU-UUC--A Aa-----aCU CCUU-----( 1741 GAA-A-)GAG GA-Gc----c u--cc----- ----(UUCG- -----)---- -----GGAU- 1801 ---------- -----|GGAA U-GA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUU(GUGA) AAUGUCGAG( UUAAGU)CUC GUAACGAGCG CAACCCAUG| UCUCUU-G-U 1921 UGCU------ ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( -----cacug )--------- 2101 |AGUGCUUAA GAGAGACUGC CGAc-caaca ---------- ---------- ---------- 2161 UCGGAGGAAG GUGUGGAUGA UGUC-AA--G UCAGCAUGCC CCUUACAUCC UGGGCUAC-A 2221 CACGUACUAC AAUGGU--AA GGACAAUGAG Cu----gcga uccu------ ---------- 2281 ----(----G CGA-)----- ---------- ----AGGC-U AGCCAAUC-U CAA-AAACCU 2341 UAUCUCAGUU CGGAUUGCAC UC(--UGCAA CUC)GAGUGC AUGAAGGUGG AAUCGCU--- 2401 ---AGUAAU- CGCUGG(UC- -AGCUAU)AC AGCGGUGAAU AC--GUU--- ---------- 2461 -------CCC GGGUCUUGUA CACACUGCCC GUCACACCAU GGAAGUCGA- CUCUUCCCUA 2521 AGUCGUU--- ACUCG-AACC -(---c-auu g------)-G G-ACG-AGG- AU-GCCG-AA 2581 GG-CAGGGUU GGUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGUGG 2641 CUGGAAUACC UCCUUU--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.C.ke.1 2717 bp RNA RNA 11-JAN-191 DEFINITION Chlorella kessleri. ACCESSION No information KEYWORDS No information. SOURCE Chlorella kessleri. ORGANISM Chlorella kessleri. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X65099 LOCUS CHLCPSSRRN 1592 bp ds-DNA ORG 23-JUN-1992 DEFINITION C.kessleri plastid DNA for 16S-like rRNA small subunit ACCESSION X65099 KEYWORDS small subunit ribosomal RNA. SOURCE Chloroplast Chlorella kessleri DNA. ORGANISM Chloroplast Chlorella kessleri Eukaryota; Chlorophycota; Chlorophyceae; Chlorococcales; Oocystaceae. REFERENCE 1 (bases 1 to 1592) AUTHORS Huss,V.A., Hirsh,E. and Giovannoni,S.J. JOURNAL Unpublished (1992) STANDARD full automatic COMMENT *source: strain=211-11g (type strain); From EMBL entry CKSSRRNA; dated 01-APR-1992. FEATURES Location/Qualifiers rRNA 1..1592 /product="small subunit rRNA" misc_feature 1..30 /note="PCR amplification primer" BASE COUNT 429 a 338 c 474 g 348 t 3 others ORIGIN BASE COUNT 429 a 338 c 474 g 348 t 1128 others ORIGIN 1 |--------- UGCCUGCAGA GAG-UU(Y-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGAACG|A A-------ug guu-ucuucu a(cu------ 121 ---------- --ug------ )uagaaga-- -aauuaa--- ------UG-- AGU--GGCGG 181 ACGGGUGAGU AA-CACGUAA GA-ACCUGC- CUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------U 301 GGA------- --GAGGGACA ACCA------ ---------- --------CU G(GAAA)CGG 361 -UGGCUAAAA CC-UCAU-AA ---------- ---------- ---------- --------GC 421 U-------(G AGA---)--- ----AGU--- ---GAAAA-- ---------- ---------- 481 GAU------- ------(--- -----G-AAA A------)-- -------|-- --AUCGCCAA 541 GAGA-UGG|G -CUUGCGG|- CUGAUUA-GC UAGUUGG-UG -AG(G-UAAU GG)-CUUACC 601 AA|GGCAAUG AU|CAGUAGC UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGAGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGCCGCG UGAAGGAUGA AGGCC(---U 781 GUG--)GG-U U--GUAAACU UC|UUUU-CU CAGAGAAGAA AA-------- (--------) 841 --------AU UGACG|GU-A UCU-GAGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GU UUGACAAG-| UCU-CCUGUC AAAGAUCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CUGG-GC-CG GCAGG--AGA -AAC-U|AUC -AG-G-CUAG AG-UU|CGGU 1141 A-----GGGG CAGAG|GGAA UUCCCGG-UG GAGCG(GUGA AA)UGCGUAG AUA---UCGG 1201 GAGGAACACC AAA---GGC( GAAA)GC|A| CUCUG-CUG| GGCCG--Auu uuuuuuguuu 1261 uuuuuuguuu uuugaauccg uucaaaaaac aaaaaagagu ucaaaaaaag UACUGACACU 1321 |GAG-AGACG AAAGCGAGGG GAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 C-GCCGUAAA CGAUGGAU-- --AC|UA|GG UG-UUGGGUG ---------- --------(- 1441 ------guuu aaaa-)a--- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CAUUCAG UACC-GUAGC (UCAC)GCGU 1561 -GAAGUAUCC |C|GCCUGGG GAGUAUGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-ACU--U -------UUU UCCU-----( 1741 GAA-A-)GGG AA-AGu-ucu c--acuuuuu uagg(uuu-- -----)ccua aaaaaguga- 1801 ---------- ---ag|GGUG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(UUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUG| UUUUGA-G-U 1921 UGCCA-U--- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --uuuu---- )--------- 2101 |GGGAAACUC AAAAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACGUCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG GGACAAAGAG AU----GCAA UCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGU-U AGCCAACC-U CAA-AAACCC 2341 GGUCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGUCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU AC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGGAGCUGG- CUAUGCCCAA 2521 AGUCGUU--- ACCCC-AACC a(---a-cua c------)uG G-AGG-GGG- AU-GCCU-AA 2581 GG-CAGGGCU AGUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGNGG 2641 NUGGAUCACC UCCUUG--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.C.ke.2 2717 bp RNA RNA 11-JAN-191 DEFINITION Chlorella kessleri. ACCESSION No information KEYWORDS No information. SOURCE Chlorella kessleri. ORGANISM Chlorella kessleri. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: D11346 LOCUS CHLCP16S 1545 bp ss-rRNA RNA 04-SEP-1994 DEFINITION Chlorella kessleri chloroplast 16S ribosomal RNA. ACCESSION D11346 KEYWORDS chloroplast 16S ribosomal RNA; protein synthesis. SOURCE Chlorella kessleri (strain Chlorella kessleri) rRNA. ORGANISM Chlorella kessleri Eukaryota; Chlorophycota; Chlorophyceae; Chlorococcales; Oocystaceae. REFERENCE 1 (bases 1 to 1545) AUTHORS Oyaizu,H., Matsumoto,S. and Takeda,H. TITLE Polyphyletic origins of chlorophyte chloroplasts JOURNAL Unpublished (1992) STANDARD full automatic COMMENT These data kindly submitted in computer readable form by: Hiroshi Oyaizu Faculty of Agriculture The University of Tokyo Bunkyo-ku, Tokyo 183 Japan Phone: 03-3812-2111 x5240 Fax: 03-3812-0544. NCBI gi: 534861 FEATURES Location/Qualifiers source 1..1545 /organism="Chlorella kessleri" /strain="Chlorella kessleri" /sequenced_mol="rRNA" BASE COUNT 422 a 323 c 458 g 340 t 2 others ORIGIN BASE COUNT 422 a 323 c 458 g 340 t 1174 others ORIGIN 1 |--------- nnnnnnnnnn nnn-nn(n-n n)nnnn|nnn nCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGAACG|A A-------ug guu-ucuucu a(cu------ 121 ---------- --ug------ )uagaaga-- -aauuaa--- ------UG-- AGU--GGCGC 181 ACGGGUGAGU AA-CACGUAA GA-ACCUGC- CUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------U 301 GGA------- --GAGGGACA ACCA------ ---------- --------CU G(GAAA)CGG 361 -UGGCUAAAA CC-UCAU-AA ---------- ---------- ---------- --------GC 421 U-------(G AGA---)--- ----AGU--- ---GAAAA-- ---------- ---------- 481 GAU------- ------(--- -------GAA A------)-- -------|-- --AUCGCCAA 541 GAGA-UGG|G -CUUGCGG|- CUGAUUA-GC UAGUUGG-UG -AG(G-UAAU GG)-CUUACC 601 AA|GGCAAUG AU|CAGUAGC UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGAGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGCCGCG UGAAGGAUGA AGGCC(---U 781 GUG--)GG-U U--GUAAACU UC|UUUU-CU CAGAGAAGAA AA-------- (--------) 841 --------AU UGACG|GU-A UCU-GAGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GU UUGACAAG-| UCU-CCUGUC AAAGAUCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CUGG-GC-CG GCAGG--AGA -AAC-U|AUC -AG-G-CUAG AG-UU|CGGU 1141 A-----GGGG CAGAG|GGAA UUCCCGG-UG GAGCG(GUGA AA)UGCGUAG AUA---UCGG 1201 GAGGAACACC AAA---GGC( GAAA)GC|A| CUCUG-CUG| GGCCG--Auu uuuuuuguuu 1261 uuuuuuguuu uuugaauccg uucaaaaaau aaaaaagagu ucaaaaaaag UACUGACACU 1321 |GAG-AGACG AAAGCGAGGG GAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 C-GCCGUAAA CGAUGGAU-- --AC|UA|GG UG-UUGGGUG ---------- --------(- 1441 ------guuu aaaa-)a--- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CAUUCAG UACC-GUAGC (UAUC)GCGU 1561 -GAAGUAUCC |C|GCCUGGG GAGUAUGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CA-CUU--- -------UUU UCCU-----( 1741 GAA-A-)GGG AA-AGu-ucu c--acuuuuu uagg(uuu-- -----)ngua aaaaaguna- 1801 ---------- ---ag|GGUG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(UUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUG| UUUUGA-G-U 1921 UGCCA-U--- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --uuuu---- )--------- 2101 |GGGAAACUC AAAAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACGUCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG GGACAAAGAG AU----GCAA UCCC------ ---------- 2281 ----(----U CGA-)----- ---------- ----GGGU-U AGCCAACC-U CAA-AAACCC 2341 GGUCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGUCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGU(UC- -AGC-AU)AC GGCGGUGAAU AC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGGAGCUGG- CUAUGCCCAA 2521 AGUCGUU--- ACCCC-AACC a(---a-cua c------)uG G-AGG-GGG- AU-GCCU-AA 2581 GG-CAGGGCU AGUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCnn 2641 nnnnnnnnnn nnnnnn--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.C.frag 2717 bp RNA RNA 11-JAN-191 DEFINITION Codium fragile. ACCESSION No information KEYWORDS No information. SOURCE Codium fragile. ORGANISM Codium fragile. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U08345 BASE COUNT 446 a 275 c 401 g 377 t 1218 others ORIGIN 1 |--------- UUGAAAUGGA GAGGUU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGA 61 UAUGCUU--A ACACAUGCAA GUCGAACG|A A----uauua agu-uuucuu a(aa------ 121 ---------- --uu------ )uguagaa-- -auuuaaua- ------UU-- AGU--GGCGA 181 ACGGGUGAGU AA-CGCGUAA GA-AUCUGC- UUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGU------- --AAAGAAUA ACAA------ ---------- --------UU G(GAAA)CGA 361 -UUGCUAAUA CU-UUAU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGU--- ---UAAA--- ---------- ---------- 481 GG-------- ------(--- --uuuu-auu u------)-- -------|-- ---CCGCCCA 541 GAAA-UGA|G -CUUGCGU|- CUGAUUA-GC UAGUUGG-UA -AG(A-UAAA AG)-CUUACC 601 AA|GGCAAUG AU|CAGUAGU UG|GUCU(GA GA)GGAUGAU CAAC|CACAC UGGGA(CUGA 661 GAUACG)GCC CAGA-C--CU U(UA-CG)GA -G--GGCAG- CAGUGAGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUAUCGCG UGAAGGAUGA CGGCC(---U 781 GUG--)GG-U U--GUAAACU UC|UUUU-CU UAAGAAAGAA ---------- (---UUC--) 841 ---------- UGACG|GU-A CUU-AAGGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGAG|GA UGCAAGCGUU AU-CCGAAAU UAUUGGGC|G 961 UAAAGAGUUU GUAGGUG|GU UUUUUAAG-| UCU-ACUGUU AAAUAUCAGA GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACU UUGA-AC-AA GCAGU-AUGA -AAC-U|AAU -UA-A-CUUG AG-UU|UGGU 1141 A-----GAGG CAGAG|GGAA CUCUCGA-UG UAGUG(GUGA AA)UACGUAG AUA---UCGG 1201 GGGGAACACC AGU---AGC( GAAA)GC|G| CUCUG-CUG| GGCCA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- AACUGACACU 1321 |GAG-AAACG AAAGCUAGGG GAGCAAAUAG G(AUU-A-GA UAC)-CCUAG UAG-|UC-CU 1381 A-GCUGUAAA CGAUGGAU-- --AC|UA|AG UA-UUGGGCU U--------- --------(- 1441 -------uuu g----)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|AAGUUCAG UGUU-GAAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGAAUUG ACA----UA| -CU-CGU--U G-----GUUU UUUA-----( 1741 GAA-A-)UAA AA-AAC---u ---------- ----(guu-- -----)---- --------a- 1801 ---------- -----|AAGA GAUA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUG| UCUUUA-G-U 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --uguu---- )--------- 2101 |----AUCUA GAGAGACUGC CGGU(GAUAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUAAGUCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGU--AU AGACAAAGGG AA----GCAA AUCU------ ---------- 2281 ----(----G CGA-)----- ---------- ----AGAG-U AGCAAAUC-U CAA-AAACUA 2341 UAUCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGUCGG AAUCGCU--- 2401 ---AGUAAU- CGCUGG(UC- -AGCCAU)AC AGCGGUGAAU AU--GUU--- ---------- 2461 -------CUC GGGCCUUGUA CACACCGCCC AUCACGCUCG AGAAAUUGG- AAAUACCCAA 2521 AGUCAUC--- AUUCU-AACC a(--ua-uuu uu-----)uG G-AAG-AUA- AU-GCCA-AA 2581 GG-UAGAGCU AGUGACUCAA GCGAAGUUGU AACAAGGUAA CCGUACU(GG AA)GGUGCGG 2641 UUGGAUCACC UCCUUA--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS (4)-Strept 2717 bp RNA RNA 17-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 2717 others ORIGIN 1 |......... .......... ...-...... .......... .......... .......... 61 .......... .......... .....--.-. .......... ...------- ---------- 121 ---------- ---------- ---------. ......---- -----..... ...--...-- 181 ---------- -------... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......--. 301 ...------- --....---- ---------- ---....... .....---.. ....--.... 361 -......... .-...-..-. ---------- ---------- -------... ..-....... 421 ..------.. ........-- ----...... .......... ..-------- ---------- 481 .......... .-..-....- .......--. .......... .......... ........-. 541 ....-..... -......... .........- -......... .-...-.... .......... 601 ......---- -.-.....|. .......... ...|.....| ...--..... .......... 661 ......-... .......-.. |...-..... -.--....-- -......... .....-..-. 721 .......... -...------ ---------- ---------- ---------- ---------- 781 ---------- ----...... .....----- --........ ..-.....-. |..-----.. 841 .--------- ------.... ......-... .......... .........- .........- 901 --.....-.. ...---..-| ......|... .-........ ..-....... ........|. 961 .......... .......... ........-. |..-...... .......... .......... 1021 .......... .......... .......... .......... .......... ....------ 1081 ---...-..- .......-.| .....---.. ......-... -..-.----. .|-....... 1141 ..----.... .......... ....------ -......-.. ...------- ---------- 1201 ---------- ---------- |--------- ---------- ...-.--... .......... 1261 .......... .......... .......... .........- ---------- ....-..... 1321 -....|.... .......... .......... .....-.... .-------.. .|.--..... 1381 ...-...-.. ........-- --..-..... ..-..-.... .-.....--- ---------- 1441 --------.. ..---..... ....--.--. ....----.- -..--..--- ---------- 1501 ---------- ---------- ---------- --....---- --------.. .......... 1561 -....|.... ..|..-.... .......... .....-.... .......... .......... 1621 ......-... .......... ......-... .......... .......... .....----- 1681 -.-------. .......... ....---..| ...-...... .------... ......---. 1741 ...-...... ..-....... .......--- ----...--- ------.--- -----..... 1801 ..-------- -----..... .--.|..... ..---..... ..-------- --........ 1861 .....--.-- .--....... ...------- ---------. .-........ ......-... 1921 ....-..... .......-.- -......... .........- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------. .......--- ...--..... 2101 .......... ....|||... .......... ----..---- ---....... ...------. 2161 .......... .......... .......--. .......... .......... ........-. 2221 .......... .......-.. .......... ...---.... ....------ ---------- 2281 ----.----. ...-...... .......... .......... ........-. .......... 2341 .......... .......... ...--..... .......... .......... .......--- 2401 ---....... .......... -......... .......... ...-....-- ---------- 2461 -------... .......... .......... .......... .......... .......... 2521 .......--- .......... .......... .......... .-........ .......-.. 2581 ..-....... .......... .......... .......... .......... .......... 2641 .......... .......-.. .......... .......... .......... .......... 2701 .......... ......| // LOCUS chl.Cha.sp 2717 bp RNA RNA 11-JAN-191 DEFINITION Chara spec.. ACCESSION No information KEYWORDS No information. SOURCE Chara spec. ORGANISM Chara spec. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X75519 LOCUS CSPL16SR 1515 bp DNA PLN 08-JUN-1995 DEFINITION Chara spec. plastid 16S rRNA gene. ACCESSION X75519 KEYWORDS 16S ribosomal RNA. SOURCE Chara sp. ORGANISM Chara sp. Eukaryotae; mitochondrial eukaryotes; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Charophyta; Charales; Characeae; Chara. REFERENCE 1 (bases 1 to 1515) AUTHORS Huss,V.A.R. TITLE Direct Submission JOURNAL Submitted (02-NOV-1993) to the EMBL/GenBank/DDBJ databases. V. A. R. Huss, Inst fuer Botanik & Pharmazeutische, Biologie, Universitaet Erlangen, Staudtstr. 5, 91058 Erlangen, FRG REFERENCE 2 (bases 1 to 1515) AUTHORS Huss,V.A.R., Straub,S. and Kranz,H.D. JOURNAL Unpublished COMMENT NCBI gi: 860911 FEATURES Location/Qualifiers source 1..1515 /organism="Chara sp." /note="plastid" primer_bind 1..30 /note="PCR amplification 5'-primer" rRNA 1..1515 /product="16S small subunit ribosomal RNA" primer_bind complement(1493..1515) /note="PCR amplification 3'-primer" BASE COUNT 397 a 343 c 460 g 312 t 3 others ORIGIN BASE COUNT 397 a 343 c 460 g 312 t 1205 others ORIGIN 1 |--------- UGCCUGCAGA GAG-UU(Y-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGAACG|G AA-----uau auu-gauugg u(uu------ 121 ---------- --ca------ )aucaauc-- -aauaua--- ------UUC- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GG-ACUUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGU------- --GGGGGAUA ACAA------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CC-CCAU-AA ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGU--- ---AAAA--- ---------- ---------- 481 GGA------- ------(--- -------gga a------)-- -------|-- --UCCGCCCU 541 AGGA-GAG|A -CUUGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-UAAU CG)-CUUACC 601 AA|GGCAACG AU|CAGUAGC UG|AUCU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGCCGCG UGGAGGUAGA AGGCC(---- 781 UAC--)GGGU C--GUAAACU CC|UUUU-UU CAGAGACGAA A--------- (---Uca--) 841 ---------- UGAcG|GU-A UCU-GAAGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUUUUCAG-| UCU-GCUGUU AAAAACUAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CUAG-AC-AG GCAGC--AGA -AAC-U|ACU -AA-G-CUGG AG-UC|CGGU 1141 A-----GAGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AUA---UCGG 1201 AAAGAACGCC CAA---GGC( GAAA)GC|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACACU 1321 |GAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCUGUAAA CGAUGGAC-- --AC|UA|AG UG-CUGGAcg ---------- --------(- 1441 ------auuu gauc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUUCAG UGCU-GGAGC (UAAC)GCGU 1561 -UAAGUGUCC |C|GCCUGGG GAGUACGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGUUUG ACA----UA| -CU-GUG--A G------UCC CUCU-----( 1741 GAA-A-)AGA GG-GAG---U G--CC----- ----(uucg- -----)---- -----GGAA- 1801 ---------- -----|CACG GAUA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UUUCUA-G-U 1921 UGCC------ ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --auuau--- )--------- 2101 |GGAACUCUA GAGAGACUGC CGGU(GAUAA ----)----- ---------- ---------U 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACAUCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG GGACAAAGAG UU----GCAA CCCU------ ---------- 2281 ----(----G CGA-)----- ---------- ----AGGC-G AGCUAACC-U -CAAAAACCC 2341 GGUCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUCAAGGCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAU GGGAGCUGA- CCAUGCCCGA 2521 AGUCGUU--- ACCCU-AACC -(uuaa-auu acuuaa-)-G G-AGG-GGG- AU-GCCG-AA 2581 GG-CAGGGCU AGUGACUGGA GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGNGG 2641 NUGGAUCACC UCCUUG--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.C.orbi 2717 bp RNA RNA 11-JAN-191 DEFINITION Coleochaete orbicularis. ACCESSION No information KEYWORDS No information. SOURCE Coleochaete orbicularis. ORGANISM Coleochaete orbicularis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U24579 LOCUS COU24579 1617 bp DNA PLN 02-AUG-1995 DEFINITION Coleochaete orbicularis chloroplast 16S rRNA gene, partial sequence. ACCESSION U24579 KEYWORDS . SOURCE Coleochaete orbicularis. ORGANISM Chloroplast Coleochaete orbicularis Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Charophyta; Coleochaetales; Coleochaetaceae; Coleochaete. REFERENCE 1 (bases 1 to 1617) AUTHORS Manhart,J.R. TITLE Chloroplast 16S rDNA sequences and phylogenetic relationships of fern allies and ferns JOURNAL Unpublished (1995) REFERENCE 2 (bases 1 to 1617) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (03-APR-1995) James R. Manhart, Biology, Texas A&M University, Department of Biology, Texas A&M University, College Station, TX 77843-3258, USA COMMENT NCBI gi: 924735 FEATURES Location/Qualifiers source 1..1617 /organism="Coleochaete orbicularis" /chloroplast rRNA <1..1457 /product="16S rRNA" BASE COUNT 442 a 342 c 464 g 369 t ORIGIN BASE COUNT 385 a 325 c 441 g 306 t 1260 others ORIGIN 1 |--------- nnnnnnnnnn nnn-nn(n-n n)nnnn|nnn nnnnnnnnnn nnC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGUACG|A G--------- --------ag g(cu------ 121 ---------- --ugu----- )ccu------ ---------- ------UU-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GU-ACUUAC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGU------- --GGGGAACA ACAG------ ---------- --------UU G(GAAA)CGA 361 -CUGCUAAUA CC-GCAU-AU ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAA--- ---------- ---------- 481 AGA------- ------(--- -----g-gaa -------)-- -------|-- --UCUGCCUA 541 GGGA-GGG|G -CUUGCGU|- CUGAUUAUGC UAGUUGG-UG -AG(G-UAAU GG)-CUUACC 601 AA|GGCUACG AU|CAGUAGC UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGCCGCG UGGAGGAAGA AAGCU(---U 781 ACG--)GG-U U--GUAAACU CC|UUUU-CU CAGAGAAGAA AA-------- (--------) 841 --------AA UGACG|GU-A UCU-GAGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUU|GU UUAUUAAG-| UCC-GCUGUU AAAUCCCACG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC AUGG-AC-AG GCGGC--GGA -AAC-U|AUU -AA-A-CUAG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AUA---UCGG 1201 AAAGAACACC CAA---GGC( GAAG)GC|A| CUUUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- AACUGACACU 1321 |GAG-AGACG AAAGCUAGGG GAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UG|AG CG-CUGCGCG ---------- --------(- 1441 ------uauc aacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UGCU-UUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGCUC (GAAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-ACG--A A------UCU UUUU-----( 1741 GAA-A-)GAA GA-GAG---U G--CC----- ----(UUUA- -----)---- -----GGAA- 1801 ---------- -----|CGUG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUG| UAUCUA-G-U 1921 UGCCA-U--- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( ucaauuuauu )--------- 2101 |GGAACCCUA GAUAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG GGACAAAGAG UU----GUAA UCCU------ ---------- 2281 ----(----G AGA-)----- ---------- ----AGGC-U AACUAACC-U CAU-AAACCC 2341 GGUCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAU GGGAGUUGG- CCACGCCCGA 2521 AGUCGUU--- ACUUU-AACC -(-----gua au-----)-G G-AGG-AGG- AU-GCCG-AA 2581 GG-CGAAGCU AGUGACUGGA GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUUU--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.K.flac 2717 bp RNA RNA 11-JAN-191 DEFINITION Klebsormidium flaccidum. ACCESSION No information KEYWORDS No information. SOURCE Klebsormidium flaccidum. ORGANISM Klebsormidium flaccidum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X75522 LOCUS KFPL16SR 1511 bp DNA PLN 08-JUN-1995 DEFINITION K.flaccidum plastid 16S rRNA gene. ACCESSION X75522 KEYWORDS 16S ribosomal RNA. SOURCE Klebsormidium flaccidum. ORGANISM Klebsormidium flaccidum Eukaryotae; mitochondrial eukaryotes; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Charophyta; Klebsormidiales; Klebsormidiaceae; Klebsormidium. REFERENCE 1 (bases 1 to 1511) AUTHORS Huss,V.A.R. TITLE Direct Submission JOURNAL Submitted (02-NOV-1993) to the EMBL/GenBank/DDBJ databases. V. A. R. Huss, Inst fuer Botanik & Pharmazeutische, Biologie, Universitaet Erlangen, Staudtstr. 5, 91058 Erlangen, FRG REFERENCE 2 (bases 1 to 1511) AUTHORS Huss,V.A.R., Straub,S. and Kranz,H.D. JOURNAL Unpublished COMMENT NCBI gi: 861011 FEATURES Location/Qualifiers source 1..1511 /organism="Klebsormidium flaccidum" /strain="SAG 335-2b" /note="plastid" primer_bind 1..30 /note="PCR amplification 5'-primer" rRNA 1..1511 /product="16S small subunit ribosomal RNA" primer_bind complement(1489..1511) /note="PCR amplification 3'-primer" BASE COUNT 357 a 389 c 505 g 257 t 3 others ORIGIN BASE COUNT 357 a 389 c 505 g 257 t 1209 others ORIGIN 1 |--------- UGCCUGCAGA GAG-UU(Y-G A)UCCU|GGC UCAGGAUGAA CGC-UAGCGG 61 UUUGCCU--A ACACAUGCAA GUUGCACG|G CG-------- --c-caugcc u(cu------ 121 ---------- --cg------ )aggaaug-- -g-------- ------CGG- AGU--GGCGG 181 ACGGGUGAGG AA-CGCGUAA GG-ACCUGC- CCCU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGGAUA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CC-CCAU-AU ---------- ---------- ---------- --------CC 421 U-------(G AGG---)--- ----AGG--- ---GAAA--- ---------- ---------- 481 GGA------- ------(--- -------gag a------)-- -------|-- --UCCGCCCA 541 GGGA-GGG|G -CUUGCGU|- CUGAUUA-GC UAGUUGG-GG -GG(G-UAAU GG)-CCUCCC 601 AA|GGCAACG AU|CAGUUGC UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGAGG-A AUCUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGG|G CAAUGCCGCG UGGAGGAUGA AGGCC(--CA 781 AUG--)GG-U C--GUAAACU UC|UUUAGAU CAGAGACGAA G--------- (---Aga--) 841 ---------- UGAcG|GU-A CCU-GAAGAA CUAAGCAUC| GGCUAAACC- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACGGGG|GA UGCGAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGGGUCC GCAGGUG|GC CCGGUCAG-| UCC-GCUGUC AAAACCUGGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AG-AG GCGGC--GGA -GAC-C|ACC -GG-G-CUUG AG-UC|CGGU 1141 A-----GGGG CAGAG|GGAA UUCCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 GAAGAACGCC AAG---GGC( GAAG)GC|A| CUCUG-CUA| GGCCU--Gau uucgc----- 1261 ---------- ---------- ---------- ---------- ---------- GACUGACACU 1321 |CAG-GGACG AGAGCCAGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 G-GCCGUAAA CGAUGGAU-- --AC|CA|AG CC-CUGCGCG ---------- --------(- 1441 ------uauc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGGGCAG GGCU-GUAGC (UAAC)GCAU 1561 -GAAGUAUCC |C|GCCUGGG GAGUACGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGAGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-GCG--A A------CCC CCCU-----( 1741 GAG-A-)GGG GG-GGG---U G--CC----- ----(uucg- -----)---- -----GGAG- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUAA) GAUGUUGGG( UUCAGU)CCC GCAACGAGCG CAACCCCCG| UCUCUA-G-U 1921 UGCC------ ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( cacaauuc-- )--------- 2101 |GGCACCCUA GAGAGACCGC CGGU(GUUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGGGGAUGA GGUC-AA--G UCAACAUGCC CCUUUUGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG GGACAAAGAG AU----GCGA CCCC------ ---------- 2281 ----(----G CAA-)----- ---------- ----GGCC-A GCCUGACC-U -CGUAAACCC 2341 GGCCUCAGUU CGGAUUGUAG GC(--UGCAA CCC)GCCUAC AUGAAGGAGG AAUCGCU--- 2401 ---AGUAAU- CACCGG(UC- -AGCCAU)AC GGUGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGCUUUGCA CACACCGCCC GUCACACUAU GGGAAUCGG- CCAUGCCCCA 2521 AGUCGUU--- ACCCC-AACC -(-----cgu a------)-G G-GAG-GGG- GA-UGCC-AA 2581 AGGCAGGGCU GGUGACUAAA GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGNGG 2641 NUGGAUCACC UCCUUG--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.S.maxi 2717 bp RNA RNA 11-JAN-191 DEFINITION Spirogyra maxima. ACCESSION No information KEYWORDS No information. SOURCE Spirogyra maxima. ORGANISM Spirogyra maxima. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U24596 LOCUS SMU24596 1657 bp DNA PLN 02-AUG-1995 DEFINITION Spirogyra maxima chloroplast 16S rRNA gene, complete sequence. ACCESSION U24596 KEYWORDS . SOURCE Spirogyra maxima. ORGANISM Chloroplast Spirogyra maxima Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Charophyta; Zygnematales; Zygnemataceae; Spirogyra. REFERENCE 1 (bases 1 to 1657) AUTHORS Manhart,J.R. TITLE Chloroplast 16S rDNA sequences and phylogenetic relationships of fern allies and ferns JOURNAL Unpublished (1995) REFERENCE 2 (bases 1 to 1657) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (03-APR-1995) James R. Manhart, Biology, Texas A&M University, Department of Biology, Texas A&M University, College Station, TX 77843-3258, USA COMMENT NCBI gi: 924747 FEATURES Location/Qualifiers source 1..1657 /organism="Spirogyra maxima" /chloroplast rRNA 97..1585 /product="16S rRNA" BASE COUNT 460 a 357 c 481 g 359 t ORIGIN BASE COUNT 396 a 339 c 454 g 300 t 1228 others ORIGIN 1 |--------- -UCUCAUGGA GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCCU--A ACACAUGCAA GUCGUACG|A A--------- -----ggugu u(gc------ 121 ---------- --aa------ )gacacc--- ---------- ------UU-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGC------- --GGGGGAUA ACCA------ ---------- --------UU G(GAAA)CGA 361 -UGGCUAAUA CC-CCAU-AU ---------- ---------- ---------- --------AC 421 U-------(G AAG---)--- ----AGU--- ---CAAA--- ---------- ---------- 481 GGA------- ------(--- -------gga a------)-- -------|-- --UCCACCUA 541 GAGA-GGG|G -CUUGCGU|- CUGAUUA-GC UAGUUGG-UA -AG(G-UAAU GG)-CUUACC 601 AA|GGCAACG AU|CAGUAGC UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGCCGCG UGGAGGAAGA AAGCC(---C 781 AUG--)GG-U U--GUAAACU CC|UUUU-GU CAGAGAAGAA AU-------- (--------) 841 --------AA UGACG|GU-A UCU-GAAGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUU|GC UUUUUAAG-| UCC-AUUGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CUGG-AC-AG GCAAU--GGA -GAC-U|ACU -AG-G-CUAG AG-UA|CGGU 1141 A-----GGGG CAGGG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AUA---UCGG 1201 AAAGAACACC AAC---GGC( GAAG)GC|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- AACUGACACU 1321 |GAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|AG CG-CUGUGCG ---------- --------(- 1441 ------uauu aacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UGUU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGAAUUG ACA----UG| -CC-ACG--U A------UCU GCCU-----( 1741 GAA-A-)GGG UA-GAG---U U--CC----- ----(uuuua -----)---- -----GGAA- 1801 ---------- -----|CGUG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUGA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCC------ ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( ---acaa--- )--------- 2101 |GGAACCCUA AACAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACAUCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGU--UG AGACAAAGGG AU----GCCA CCCC------ ---------- 2281 ----(----G UGA-)----- ---------- ----GGGC-A AGCAAAUC-U CAA-AAACUC 2341 AAUCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGGCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAU GGGAGCUGG- UCAUGCCCGA 2521 AGUCGUU--- CUCCU-AACC -(-----gug a------)-G G-AGG-GAA- AU-UCCG-AA 2581 GG-CAGGACU AGUGACUGGA GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAACACC UCCUUU--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.S.palu 2717 bp RNA RNA 11-JAN-191 DEFINITION Sphagnum palustre. ACCESSION No information KEYWORDS No information. SOURCE Sphagnum palustre. ORGANISM Sphagnum palustre. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U24592 LOCUS SPU24592 1435 bp DNA PLN 02-AUG-1995 DEFINITION Sphagnum palustre chloroplast 16S rRNA gene, partial sequence. ACCESSION U24592 KEYWORDS . SOURCE Sphagnum palustre. ORGANISM Chloroplast Sphagnum palustre Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Embryophyta; Bryophyta; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum. REFERENCE 1 (bases 1 to 1435) AUTHORS Manhart,J.R. TITLE Chloroplast 16S rDNA sequences and phylogenetic relationships of fern allies and ferns JOURNAL Unpublished (1995) REFERENCE 2 (bases 1 to 1435) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (03-APR-1995) James R. Manhart, Biology, Texas A&M University, Department of Biology, Texas A&M University, College Station, TX 77843-3258, USA COMMENT NCBI gi: 924748 FEATURES Location/Qualifiers source 1..1435 /organism="Sphagnum palustre" /chloroplast rRNA <1..>1435 /product="16S rRNA" BASE COUNT 364 a 350 c 458 g 263 t ORIGIN BASE COUNT 364 a 350 c 458 g 263 t 1282 others ORIGIN 1 |--------- nnnnnnnnnn nnn-nn(n-n n)nnnn|nnn nnnnnnnnnn nnC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGGACG|G G--------- ----aagcau c(cu------ 121 ---------- --agu----- )gguguuu-- ---------- ------UC-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGGACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -UUGCUAAUA CC-CCAU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAA--- ---------- ---------- 481 GGA------- ------(--- -------gga a------)-- -------|-- --UCCGCCCA 541 AGGA-GGG|G -CUUGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-CAAU GG)-CUUACC 601 AA|GGCGACG AU|CAGUAGC UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGCCGCG UGGAGGUAGA AGGCC(---C 781 ACG--)GG-U C--GUAAACU CC|UUUU-CU CAGAGAAGAA GC-------- (--------) 841 --------AA UGACG|GU-A UCU-GAGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUCUUAAG-| UCC-GCCGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-AG GCGGU--GGA -AAC-U|ACC -GA-G-CUGG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 AAAGAACACC AAC---GGC( GAAA)GC|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |GAG-AGACG AAAGCUAGGG GAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|AG CG-CUGUGCG ---------- --------(- 1441 ------uauc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-GCG--A A------UCU UCUU-----( 1741 GAA-A-)GAG AA-GAG---U G--CC----- ----(CUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCCA-U--- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( cauuuaguuu )--------- 2101 |GGAACCCUA AACAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG GGACAAAGGG UC----GCGA CCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGC-A AGCUAACC-U CAA-AAACCC 2341 GGCCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAC C---GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAU GGGAGCUGG- CCAUGCCCGA 2521 AGUCGUU--- ACCCU-AACC -(-----gua a------)-G G-AGG-GGG- AU-GCCG-AA 2581 GG-CAGGGCU AGUGACUGGA GUGAAGUCGU AACAAGGUAG CCGUACU(nn nn)nnnnnnn 2641 nnnnnnnnnn nnnnnn--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.M.poly 2717 bp RNA RNA 30-JAN-1986 DEFINITION chloroplast,Marchantia polymorpha(liverwort). ACCESSION No information KEYWORDS No information. SOURCE chloroplast,Marchantia polymorpha(liverwort). ORGANISM chloroplast,Marchantia polymorpha(liverwort). REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X04465 Phylo:Eubacteria,Cyanobacteria,chloroplast BASE COUNT 380 a 351 c 471 g 294 t 1221 others ORIGIN 1 |~~~~~~~~~ ~UCUCAUGGA GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGUACG|G G--------- ----aaggau c(cu------ 121 ---------- --agu----- )gguguuu-- ---------- ------CC-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGGACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -UUGCUAAUA CC-CCAU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAA--- ---------- ---------- 481 GGA------- ------(--- -------GGA A------)-- -------|-- --UCCGCCUA 541 AGGA-GGG|G -CUUGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-UAAU AG)-CUUACC 601 AA|GGCGACG AU|CAGUAGC UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC U(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)--CG U-GACGGA|G CAAUGCCGCG UGGAGGUAGA AGGCU(---C 781 ACG--)GG-U C--GUAAACU CC|UUUU-CU CAGAGAAGAU GC-------- (--------) 841 --------AA UGACG|GU-A UCU-GAGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUUUUAAG-| UCC-GCCGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-AG GCGGU--GGA -AAC-U|ACC -AA-G-CUGG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 AAAGAACACC AAU---GGC( GAAA)GC|A| CUCUU-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |GAG-AGACG AAAGCUAGGG GAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|AG CG-CUGUGC- ---------- --------(- 1441 ------uauc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-GUG--A A------UCU UUUU-----( 1741 GAA-A-)GAA AA-GAG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCU| UGUUUA-G-U 1921 UGCCa----- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( ucauuaaguu )--------u 2101 |GGAACCCUA AACAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG GGACAAAGGG UC----GCGA CCUC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GAGA-A AGCUAACC-U CAA-AAACCC 2341 GGCCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCcAU)AC GGCGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAU GGGAGCUGG- CCAUGCCCGA 2521 AGUCGUU--- ACUCU-AACC -(-----gua a------)-G G-AGG-GGG- GU-GCCG-AA 2581 -C-AGGGGCU AGUGACUGGA GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUUU--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.I.mela 2717 bp RNA RNA 11-JAN-191 DEFINITION Isoetes melanopoda. ACCESSION No information KEYWORDS No information. SOURCE Isoetes melanopoda. ORGANISM Isoetes melanopoda. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U24585 LOCUS IMU24585 1452 bp DNA PLN 02-AUG-1995 DEFINITION Isoetes melanopoda chloroplast 16S rRNA gene, partial sequence. ACCESSION U24585 KEYWORDS . SOURCE Isoetes melanopoda. ORGANISM Chloroplast Isoetes melanopoda Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Embryophyta; Lycopodiophyta; Isoetopsida; Isoetales; Isoetaceae; Isoetes. REFERENCE 1 (bases 1 to 1452) AUTHORS Manhart,J.R. TITLE Chloroplast 16S rDNA sequences and phylogenetic relationships of fern allies and ferns JOURNAL Unpublished (1995) REFERENCE 2 (bases 1 to 1452) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (03-APR-1995) James R. Manhart, Biology, Texas A&M University, Department of Biology, Texas A&M University, College Station, TX 77843-3258, USA COMMENT NCBI gi: 924739 FEATURES Location/Qualifiers source 1..1452 /organism="Isoetes melanopoda" /chloroplast rRNA <1..>1452 /product="16S rRNA" BASE COUNT 363 a 362 c 474 g 253 t ORIGIN BASE COUNT 363 a 362 c 474 g 253 t 1265 others ORIGIN 1 |--------- nnnnnnnnnn nnn-nn(n-n n)nnnn|nnn nnnnnnnnnn nnC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGGACG|G G--------- ----aagcau c(ca------ 121 ---------- --cagu---- )gguguuu-- ---------- ------CC-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGG------- --GGGGGACA ACGG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CC-CUAU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---GAAA--- ---------- ---------- 481 GGA------- ------(--- -----g-gaa a------)-- -------|-- --UCCGCCCA 541 AGGA-GGG|G -CUUGCGU|- CUGAUUA-GC UGGUUGG-UG -AG(G-CAAC GG)-CUUACC 601 AA|GGCGACG AU|CAGUAGC UG|GUCC(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGCCGCG UGGAGGUAGA AGGCC(---C 781 ACG--)GG-U C--GUAAACU CC|UUUU-CU CGGAGAAGAA GC-------- (--------) 841 --------AA UGACG|GU-A UCU-GAGGAA -UAAGCAUC| GGCU-AACC- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUCGCAAG-| UCC-GCCGUC AAAUCUCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-AG GCGGU--GGA -AAC-U|ACC -AA-G-CUGG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUCCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 GAAGAACACC AACaacGGC( GAAA)GC|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |GAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|GG CG-CUGUGCG ---------- --------(- 1441 ------uauc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UGCC-GCAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-GCG--A A------UCC UCUU-----( 1741 GAG-A-)GAG AG-GAG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCCA-C--- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( cauugaguuu )--------- 2101 |GGAACCCUA AACAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG GGACAAAGGG UC----GCAA CCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGC-A AGCUAACC-U CAG-AAACCC 2341 GGCCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC ACGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAU GGGAGCUGG- CCAUGCCCGA 2521 AAUCGUU--- ACCUU-AACC -(-----gca a------)-G G-GGA-GGA- AU-GCCG-AA 2581 GG-CAGGGCU AGUGACUGGA GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 nnnnnnnnnn nnnnnn--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.S.apod 2717 bp RNA RNA 11-JAN-191 DEFINITION Selaginella apoda. ACCESSION No information KEYWORDS No information. SOURCE Selaginella apoda. ORGANISM Selaginella apoda. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U24591 LOCUS SAU24591 1446 bp DNA PLN 02-AUG-1995 DEFINITION Selaginella apoda chloroplast 16S rRNA gene, partial sequence. ACCESSION U24591 KEYWORDS . SOURCE meadow spike moss. ORGANISM Chloroplast Selaginella apoda Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Embryophyta; Lycopodiophyta; Isoetopsida; Selaginellales; Selaginellaceae; Selaginella. REFERENCE 1 (bases 1 to 1446) AUTHORS Manhart,J.R. TITLE Chloroplast 16S rDNA sequences and phylogenetic relationships of fern allies and ferns JOURNAL Unpublished (1995) REFERENCE 2 (bases 1 to 1446) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (03-APR-1995) James R. Manhart, Biology, Texas A&M University, Department of Biology, Texas A&M University, College Station, TX 77843-3258, USA COMMENT NCBI gi: 924746 FEATURES Location/Qualifiers source 1..1446 /organism="Selaginella apoda" /chloroplast rRNA <1..>1446 /product="16S rRNA" BASE COUNT 342 a 381 c 483 g 240 t ORIGIN BASE COUNT 342 a 381 c 483 g 240 t 1271 others ORIGIN 1 |--------- nnnnnnnnnn nnn-nn(n-n n)nnnn|nnn nnnnnnnnnn nnC-UGGCGG 61 CAUGCCU--A ACACAUGCAA GUCGUACG|G G--------- ----gagcac c(cu------ 121 ---------- --acccgu-- )ggugcuc-- ---------- ------CC-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAG GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGGGCA ACAG------ ---------- --------CU G(GGAA)CGG 361 -CUGCUGAUA CC-CCAU-AG ua-------- ---------- -------a-- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAA--- ---------- ---------- 481 GGA------- ------(--- -----g-gaa a------)-- -------|-- --UCCGCCCA 541 AGGA-GGG|G -CUUGCGU|- CCGAUUA-GC CUGUUGG-CG -GG(G-UAAU GG)-CUCACC 601 AA|AGCGACG AU|CGGUAGC UG|GUCC(GA GA)GGACGAU CAGC|CACAC CGGGA(CUGA 661 GACACG)GCC CGGA-C--UC C(UA-CG)GG -G--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC C-GACGGA|G CAAUGCCGCG UGGGGGUAGA AGGCC(---U 781 GCG--)GG-U C--GUAAACC GC|UUUU-AC CGGAGAAGAA GC-------- (--------) 841 --------AA UGACG|GU-A UCC-GGGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUCGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UCCUAAAG-| UCC-GCCGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CUGG-AA-GG GCGGU--GGA -AAC-U|ACU -GA-G-CCUG GG-UA|CGGU 1141 A-----GGGG CAGGG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 AAGGAACACC AAU---GGC( GAAA)GC|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |GAG-AGACG AAAGCUGGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CC 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|AG CG-CCGCGCG ---------- --------(- 1441 ------uauc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGCGCGG UGCU-GUAGC (UAAC)GCGU 1561 -CAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-GUG--A A------UCC UCUU-----( 1741 GAG-A-)GAG AG-GGG---U G--CCc---- ----(uagcc -----)---- ----gGGAA- 1801 ---------- -----|CACG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUGA) GGCGUUGGG( UUGAGU)CCC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCCA-U--- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( cauugggcuu )--------- 2101 |GGAACCCUA AACAUACUGC CGGC(GAUGA ----)----- ---------- ---------G 2161 CCGGAGGAGG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUCACGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG GGACAAAGGG UC----GCAA CCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGC-A GGCCAACC-C CGA-AAACCC 2341 GGCCUUAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGUCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAU GGGAGCUGG- CCAUGCCCGA 2521 AGUCGUC--- GCCUC-AACC -(-----uca g------)-G G-AAG-GGA- AC-GCCC-AA 2581 GG-CAGGGCU CGCGACUGGA GUGAAGUCGU AACAAGGUAG CCGUACU(nn nn)nnnnnnn 2641 nnnnnnnnnn nnnnnn--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.L.digi 2717 bp RNA RNA 11-JAN-191 DEFINITION Lycopodium digitatum. ACCESSION No information KEYWORDS No information. SOURCE Lycopodium digitatum. ORGANISM Lycopodium digitatum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U24587 LOCUS LDU24587 1456 bp DNA PLN 02-AUG-1995 DEFINITION Lycopodium digitatum chloroplast 16S rRNA gene, partial sequence. ACCESSION U24587 KEYWORDS . SOURCE Lycopodium digitatum. ORGANISM Chloroplast Lycopodium digitatum Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Embryophyta; Lycopodiophyta; Lycopodiopsida; Lycopodiales; Lycopodiaceae; Lycopodium. REFERENCE 1 (bases 1 to 1456) AUTHORS Manhart,J.R. TITLE Chloroplast 16S rDNA sequences and phylogenetic relationships of fern allies and ferns JOURNAL Unpublished (1995) REFERENCE 2 (bases 1 to 1456) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (03-APR-1995) James R. Manhart, Biology, Texas A&M University, Department of Biology, Texas A&M University, College Station, TX 77843-3258, USA COMMENT NCBI gi: 924741 FEATURES Location/Qualifiers source 1..1456 /organism="Lycopodium digitatum" /chloroplast rRNA <1..>1456 /product="16S rRNA" BASE COUNT 366 a 355 c 467 g 268 t ORIGIN BASE COUNT 366 a 355 c 467 g 268 t 1261 others ORIGIN 1 |--------- nnnnnnnnnn nnn-nn(n-n n)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGGACG|G G--------- ----aagcau c(uc------ 121 ---------- --agu----- )gguguuu-- ---------- ------UC-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGGACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CC-CUAU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAA--- ---------- ---------- 481 GGA------- ------(--- -----g-gaa a------)-- -------|-- --UCUGCCCA 541 AGGA-GGG|G -CUUGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-CAAU GG)-CUCACC 601 GA|GGCGACG AU|CAGUAGC UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCUG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACAGA|G CAAUGCCGCG UGGAGGUAGA AGGUC(---C 781 ACG--)GG-U C--GUAAACU CC|UUUU-CU CAGAGAAGAA AC-------- (--------) 841 --------AA UGACG|GU-A UCU-GAGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUCUUAAG-| UCC-GCCGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-GG GCGGU--GGA -AAC-U|ACC -AA-G-CUGG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 AAAGAACACC AAC---GGC( GAAG)GC|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |GAG-GGACG AAAGCUAGGG GAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|CA|AG CG-CUGCGCG ---------- --------(- 1441 ------uauc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUUCAG UGCU-GUAGC (UAAC)GCGU 1561 -UGAGUAUCC |C|GCCUGGG GAGUACGUUU (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-GUG--A A------UCC UCUU-----( 1741 GAA-A-)GAG AG-GAG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UGUUCA-G-U 1921 UGCCA-U--- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( cacuagguuu )--------- 2101 |GGAACUCUG AAUAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG GGACAAAGGG UC----GCAA CCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGC-A AGCUAACC-U CAA-AAACCC 2341 GGCCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU CC--GUC--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAU GGGAGCUGG- CCAUGCCCGA 2521 AGUCGUU--- ACCUC-AACC -(-----gca a------)-G G-AGG-GGG- AU-GCCG-AA 2581 GG-CAGGGCU AGUGACUGGA GUGAAGUCGU AACAAGGUAG CCGUACU(nn nn)nnnnnnn 2641 nnnnnnnnnn nnnnnn--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.E.arve 2717 bp RNA RNA 11-JAN-191 DEFINITION Equisetum arvense. ACCESSION No information KEYWORDS No information. SOURCE Equisetum arvense. ORGANISM Equisetum arvense. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U24593 LOCUS EAU24593 1443 bp DNA PLN 02-AUG-1995 DEFINITION Equisetum arvense chloroplast 16S rRNA gene, partial sequence. ACCESSION U24593 KEYWORDS . SOURCE field horsetail. ORGANISM Chloroplast Equisetum arvense Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Embryophyta; Equisetophyta; Sphenopsida; Equisetales; Equisetaceae; Equisetum. REFERENCE 1 (bases 1 to 1443) AUTHORS Manhart,J.R. TITLE Chloroplast 16S rDNA sequences and phylogenetic relationships of fern allies and ferns JOURNAL Unpublished (1995) REFERENCE 2 (bases 1 to 1443) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (03-APR-1995) James R. Manhart, Biology, Texas A&M University, Department of Biology, Texas A&M University, College Station, TX 77843-3258, USA COMMENT NCBI gi: 924737 FEATURES Location/Qualifiers source 1..1443 /organism="Equisetum arvense" /chloroplast rRNA <1..>1443 /product="16S rRNA" BASE COUNT 362 a 348 c 466 g 267 t ORIGIN BASE COUNT 362 a 348 c 466 g 267 t 1274 others ORIGIN 1 |--------- nnnnnnnnnn nnn-nn(n-n n)nnnn|nnn nnnnnnnnnn nnC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGUACG|G G--------- -----aagca u(cu------ 121 ---------- --u------- )auguuu--- ---------- ------CC-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGGACA ACAG------ ---------- --------CC G(GAAA)CGG 361 -CUGCUAAUA CC-CCAU-AG ---------- ---------- ---------- --------GC 421 U-------(G GGG---)--- ----AGC--- ---AAAA--- ---------- ---------- 481 GGGA------ ------(--- -------gga a------)-- -------|-- -UCCCGCCCA 541 AGGA-GGG|G -CUUGCGU|- CUGAUUA-GC UAGUUGG-UG -GG(G-CAAU GG)-CUUACC 601 AA|GGCAACG AU|CAGUAGC UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-G-C U-GACGGA|G CAAUGCCGCG UGGAGGUAGA AGGCC(---C 781 ACG--)GG-U C--GUAAACU CC|UUUU-CU CAGAGAAGAA GC-------- (--------) 841 --------AA UGACG|GU-A UCU-GAGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGGG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUUUUAAG-| UCC-GCCGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-GG GCGGU--GGG -AAC-U|ACC -AA-G-CUGG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 AAAGAACACC AAC---GGC( GAAA)GC|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |GAG-AGACG AAAGCUAGGG GAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|AG CG-CUGUGCG ---------- --------(- 1441 ------uauc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -UC-GCG--A A------UUC UUUC-----( 1741 GAA-A-)GAU AG-AAG---U G--CC----- ----(UACG- -----)---- -----GGAG- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCCA-U--- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( uauugaguuu )--------- 2101 |GGAACCCUA AACAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGU--CG GGACAAAGGG UC----GCGA CCCC------ ---------- 2281 ----(----G CGA-)----- ---------- -----GGC-A AGCUAACC-U CGA-AAACCC 2341 GACCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGUCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAU GGGAGCUGG- CCAUGCCCGA 2521 AGUCGUU--- ACCCU-AACC -(-----gca a------)-G G-GGG-GGG- AU-GCCG-AA 2581 GG-CAGGGCU AGUGACUGGA GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 nnnnnnnnnn nnnnnn--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.D.maxi 2717 bp RNA RNA 11-JAN-191 DEFINITION Doodia maxima. ACCESSION No information KEYWORDS No information. SOURCE Doodia maxima. ORGANISM Doodia maxima. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U24583 LOCUS DMU24583 1425 bp DNA PLN 02-AUG-1995 DEFINITION Doodia maxima chloroplast 16S rRNA gene, partial sequence. ACCESSION U24583 KEYWORDS . SOURCE Doodia maxima. ORGANISM Chloroplast Doodia maxima Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Embryophyta; Filicophyta; Filicopsida; Filicales; Blechnaceae; Doodia. REFERENCE 1 (bases 1 to 1425) AUTHORS Manhart,J.R. TITLE Chloroplast 16S rDNA sequences and phylogenetic relationships of fern allies and ferns JOURNAL Unpublished (1995) REFERENCE 2 (bases 1 to 1425) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (03-APR-1995) James R. Manhart, Biology, Texas A&M University, Department of Biology, Texas A&M University, College Station, TX 77843-3258, USA COMMENT NCBI gi: 924736 FEATURES Location/Qualifiers source 1..1425 /organism="Doodia maxima" /chloroplast rRNA <1..>1425 /product="16S rRNA" BASE COUNT 359 a 352 c 458 g 256 t ORIGIN BASE COUNT 359 a 352 c 458 g 256 t 1292 others ORIGIN 1 |--------- nnnnnnnnnn nnn-nn(n-n n)nnnn|nnn nnnnnnnnnn nnC-UGGCGG 61 CAUGCCU--A ACACAUGCAA GUCGGACG|G G--------- ----aagcau c(cu------ 121 ---------- --cgu----- )gguguuu-- ---------- ------CC-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACUUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGGACA ACAA------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CC-CCGU-AA ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAAG-- ---------- ---------- 481 GGA------- ------(--- -----g-gga -------)-- -------|-- --UCCGCCCA 541 AGGA-GGG|G -CUUGCGU|- CUGAUUA-GC UGGUUGG-UG -AG(G-CAAC GG)-CUUACC 601 AA|GGCGACG AU|CAGUAGC UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUCUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGCCGCG UGGAGGCAGA AGGCC(---C 781 ACG--)GG-U C--GUAAACU CC|UUUU-CU CGGAGAAGAA GC-------- (--------) 841 --------AG UGACG|GU-A UCC-GAGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGGG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UCCUUAAG-| UCC-GCUGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-AG GCGGC--GGA -AAC-U|ACU -AA-G-CUGG AG-UG|CGGU 1141 A-----GGGG CAGGG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 AAAGAACACC AAA---GGC( GAAG)GC|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |GAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|AU CG-CUGCGCG ---------- --------(- 1441 ------uauc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CU-GCG--A A------UCC UCUU-----( 1741 GAA-A-)AAG AG-GAG---C G--CC----- ----(UUUG- -----)---- -----GGAA- 1801 ---------- -----|CGCA GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCCCG| UGUUUA-G-U 1921 UGCCA-C--- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( uaccaaguuu )--------- 2101 |GGAACCCUA AACAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CUGGAGGAAG GUGGGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACGUCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG AAACAAAGAG CC----GCGA CCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGC-A AGCUAACC-U CAG-AAACUC 2341 GGUCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAU GGGAGCUGG- CCAUGCCCGA 2521 AGUCGUU--- GGCUU-AACC -(-----gca a------)-G G-AGA-GAG- AU-GCCU-AA 2581 GG-CAGGGCU AGUGACUGGA GUGAAGUCGU AACAAnnnnn nnnnnnn(nn nn)nnnnnnn 2641 nnnnnnnnnn nnnnnn--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.P.aqui 2717 bp RNA RNA 25-OCT-1996 DEFINITION Chloroplast Pteridium aquilinum.; 16S ribosomal RNA; 16S rRNA gene. ACCESSION Z81323 KEYWORDS 16S ribosomal RNA; 16S rRNA gene. SOURCE Chloroplast Pteridium aquilinum. ORGANISM Chloroplast Pteridium aquilinum. REFERENCE 1 (bases 1 to 1372) AUTHORS Hess,W., Breznovits,A. and Boerner,T. TITLE aquilinum Chloroplast genes of the fern Pteridium aquilinum cv. JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1372) AUTHORS Hess,W. TITLE Direct Submission JOURNAL Submitted (24-OCT-1996) Hess W., Humboldt-University, Biology, Chausseesstr. 117, Berlin, GERMANY, D-10115 STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: Z81323 BASE COUNT 346 a 338 c 441 g 247 t 1345 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~-~~(~-~ ~)~~~~|~~~ ~~~~~~~~~~ ~~~-~~~~~~ 61 ~~~~~~~--~ ~~~~~~~~AA GUCGGACG|G G--------- ----aagcau c(cu------ 121 ---------- --cgu----- )gguguuu-- ---------- ------CC-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGGACA ACAA------ ---------- --------CU G(GAAA)CGG 361 -UUGCUAAUA CC-CCGU-AA ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAaag-- ---------- ---------- 481 GGA------- ------(--- -----g-gga -------)-- -------|-- --UCCGCCCA 541 AGGA-GGG|G -CUUGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-CAAU GG)-CUUACC 601 AA|GGCGACG AU|CAGUAGC UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUCUUCCG-C 721 AAU-GGGC-( -GAAA)-G-C U-GACGGA|G CAAUGCCGCG UGGAGGCAGA AGGCC(---C 781 ACG--)GG-U C--GUAAACU CC|UUUU-CU CGGAGAAGAA GC-------- (--------) 841 --------AA UGACG|GU-A UCU-GAGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGGG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UCCUUAAG-| UCC-GCUGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CCGG-AC-AG GCAGU--GGA -AAC-U|ACU -GG-G-CUGG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 AAAGAACACC AAA---GGC( GAAG)GC|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |GAG-AGACG AAAGCUAGGG GAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|AU CG-CUGCGCG ---------- --------(- 1441 ------uauc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CU-GCG--A A------UCC UUUU-----( 1741 GAA-A-)GAG AG-GAG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCA GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCCCG| UGUUUA-G-U 1921 UGCCA-C--- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( uaucaaguuu )--------- 2101 |GGAACCCUA AACAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGGGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG AAACAGAGAG CC----GCGA CCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGC-A AGCUAACC-U CAG-AAACUC 2341 GGUCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAC)AC GGCGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAU GGGAGCUGG- CCAUGCCCGA 2521 AGUCGUU--- GGCUU-AACC -(-----gca a------)-G G-AGG-GAG- AU-GCCU-AA 2581 GG-CAG~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.C.glau 2717 bp RNA RNA 11-JAN-191 DEFINITION Cibotium glaucum. ACCESSION No information KEYWORDS No information. SOURCE Cibotium glaucum. ORGANISM Cibotium glaucum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U24582 LOCUS CGU24582 1425 bp DNA PLN 02-AUG-1995 DEFINITION Cibotium glaucum chloroplast 16S rRNA gene, partial sequence. ACCESSION U24582 KEYWORDS . SOURCE Cibotium glaucum. ORGANISM Chloroplast Cibotium glaucum Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Embryophyta; Filicophyta; Filicopsida; Filicales; Dicksoniaceae; Cibotium. REFERENCE 1 (bases 1 to 1425) AUTHORS Manhart,J.R. TITLE Chloroplast 16S rDNA sequences and phylogenetic relationships of fern allies and ferns JOURNAL Unpublished (1995) REFERENCE 2 (bases 1 to 1425) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (03-APR-1995) James R. Manhart, Biology, Texas A&M University, Department of Biology, Texas A&M University, College Station, TX 77843-3258, USA COMMENT NCBI gi: 924734 FEATURES Location/Qualifiers source 1..1425 /organism="Cibotium glaucum" /chloroplast rRNA <1..>1425 /product="16S rRNA" BASE COUNT 355 a 348 c 463 g 259 t ORIGIN BASE COUNT 355 a 348 c 463 g 259 t 1292 others ORIGIN 1 |--------- nnnnnnnnnn nnn-nn(n-n n)nnnn|nnn nnnnnnnnnn nnC-UGGCGG 61 CAUGCCU--A ACACAUGCAA GUCGGACG|G G--------- ----aagcau c(cu------ 121 ---------- --cgu----- )gguguuu-- ---------- ------CC-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGGACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -UUGCUAAUA CC-CCAU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAAG-- ---------- ---------- 481 GGA------- ------(--- -----g-gga -------)-- -------|-- --UCCGCCCG 541 AGGA-GGG|G -CUUGCGU|- CUGAUUA-GC UAGUUGG-UG -GG(G-CAGU GG)-CUUACC 601 AA|GGCGACG AU|CAGUAGC UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUCUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGCCGCG UGGAGGUAGA AGGCC(---C 781 ACG--)GG-U C--GUAAACU CC|UUUU-CU CGGAGAAGAA GC-------- (--------) 841 --------AA UGACG|GU-A UCU-GAGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGGG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UCCUUAAG-| UCC-GCUGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-AG GCGGU--GGA -AAC-U|ACU -GA-G-CUAG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUUUCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGA 1201 AAAGAACACC AAA---GGC( GAAG)GC|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |GAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|AG CG-CUGCGCG ---------- --------(- 1441 ------uauc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CU-GCG--A A------UCC UCUU-----( 1741 GAA-A-)GAG AG-GAG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCCA-C--- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( uacuaaguuu )--------- 2101 |GGAACCCUA AACAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGGGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG GGACAAAGAG CC----GCGA CCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGC-A AGCUAACC-U CAG-AAACUC 2341 GGUCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAC)AC GGCGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAU GGGAGCUGG- CCAUGCCCGA 2521 AGUCGUU--- AGCUU-AACC -(-----gca a------)-G G-AGG-GGG- AU-GCCU-AA 2581 GG-CAGGGCU AGUGACUGGA GUGAAGUCGU AACAAnnnnn nnnnnnn(nn nn)nnnnnnn 2641 nnnnnnnnnn nnnnnn--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.O.cinn 2717 bp RNA RNA 11-JAN-191 DEFINITION Osmunda cinnamomea. ACCESSION No information KEYWORDS No information. SOURCE Osmunda cinnamomea. ORGANISM Osmunda cinnamomea. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U24594 LOCUS OCU24594 1425 bp DNA PLN 02-AUG-1995 DEFINITION Osmunda cinnamomea var. fokiensis chloroplast 16S rRNA gene, partial sequence. ACCESSION U24594 KEYWORDS . SOURCE Osmunda cinnamomea var. fokiensis. ORGANISM Chloroplast Osmunda cinnamomea var. fokiensis Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Embryophyta; Filicophyta; Filicopsida; Filicales; Osmundaceae; Osmunda. REFERENCE 1 (bases 1 to 1425) AUTHORS Manhart,J.R. TITLE Chloroplast 16S rDNA sequences and phylogenetic relationships of fern allies and ferns JOURNAL Unpublished (1995) REFERENCE 2 (bases 1 to 1425) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (03-APR-1995) James R. Manhart, Biology, Texas A&M University, Department of Biology, Texas A&M University, College Station, TX 77843-3258, USA COMMENT NCBI gi: 924743 FEATURES Location/Qualifiers source 1..1425 /organism="Osmunda cinnamomea var. fokiensis" /chloroplast rRNA <1..>1425 /product="16S rRNA" BASE COUNT 354 a 347 c 463 g 261 t ORIGIN BASE COUNT 354 a 347 c 463 g 261 t 1292 others ORIGIN 1 |--------- nnnnnnnnnn nnn-nn(n-n n)nnnn|nnn nnnnnnnnnn nnC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGGACG|G G--------- ----aagcau c(cu------ 121 ---------- --cgu----- )ggugcuu-- ---------- ------CC-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGGACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CC-CCAU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAAG-- ---------- ---------- 481 GGA------- ------(--- -------gga a------)-- -------|-- --UCCGCCCA 541 AGGA-GGG|G -CUUGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-CAAU GG)-CUUACC 601 AA|GGCGACG AU|CAGUAGC UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUCUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGCCGCG UGGAGGUAGA AGGCC(---C 781 ACG--)GG-U C--GUAAACU CC|UUUU-CU CGGAGAAGAA GC-------- (--------) 841 --------AA UGACG|GU-A UCU-GAGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGGG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UCCUUAAG-| UCU-GCUGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-AG GCGGU--GGA -AAC-U|AUC -GA-G-CUGG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 AAAGAACACC AAU---GGC( GAAG)GC|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |AAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|AG CG-CUGUGCG ---------- --------(- 1441 ------uauc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-GCG--A A------UCC UUUU-----( 1741 GAG-A-)GAG AG-GAG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCCA-U--- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( uauugaguuu )--------- 2101 |GGAACCCUA AACAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGGGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG GGACAAAGGG UC----GCGA CCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGC-A AGCUAACC-U CAA-AAACCC 2341 GGCCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAU GGGAGCUGG- CCAUGCCCGA 2521 AGUCGUU--- ACCUU-AACC -(-----gca g------)-G G-AGG-GGG- AU-GCCG-AA 2581 GG-CAGGGCU AGUGACUGGA GUGAAGUCGU AACAAnnnnn nnnnnnn(nn nn)nnnnnnn 2641 nnnnnnnnnn nnnnnn--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.L.japo 2717 bp RNA RNA 11-JAN-191 DEFINITION Lygodium japonicum. ACCESSION No information KEYWORDS No information. SOURCE Lygodium japonicum. ORGANISM Lygodium japonicum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U24588 LOCUS LJU24588 1437 bp DNA PLN 02-AUG-1995 DEFINITION Lygodium japonicum chloroplast 16S rRNA gene, partial sequence. ACCESSION U24588 KEYWORDS . SOURCE Lygodium japonicum. ORGANISM Chloroplast Lygodium japonicum Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Embryophyta; Filicophyta; Filicopsida; Filicales; Schizaeaceae; Lygodium. REFERENCE 1 (bases 1 to 1437) AUTHORS Manhart,J.R. TITLE Chloroplast 16S rDNA sequences and phylogenetic relationships of fern allies and ferns JOURNAL Unpublished (1995) REFERENCE 2 (bases 1 to 1437) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (03-APR-1995) James R. Manhart, Biology, Texas A&M University, Department of Biology, Texas A&M University, College Station, TX 77843-3258, USA COMMENT NCBI gi: 924742 FEATURES Location/Qualifiers source 1..1437 /organism="Lygodium japonicum" /chloroplast rRNA <1..>1437 /product="16S rRNA" BASE COUNT 361 a 347 c 461 g 268 t ORIGIN BASE COUNT 361 a 347 c 461 g 268 t 1280 others ORIGIN 1 |--------- nnnnnnnnnn nnn-nn(n-n n)nnnn|nnn nnnnnnnnnn nnC-UGGCGG 61 CAUGCCU--A ACACAUGCAA GUCGGACG|G G--------- ----gagcac c(cu------ 121 ---------- --cgu----- )gguguuu-- ---------- ------CC-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCCU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGGACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CC-CCAU-AA ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAAG-- ---------- ---------- 481 GGA------- ------(--- -----g-gaa -------)-- -------|-- --UCCGCCCG 541 AGGA-GGG|G -CUUGCGU|- CUGAUUA-GC UAGUUGG-UG -GG(G-CAAU GG)-CUCACC 601 AA|GGCGACG AU|CAGUAGC UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUCUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGCCGCG UGGAGGUAGA AGGCC(---C 781 ACG--)GG-U C--GUAAACU CC|UUUU-CU CGGAGAAGAA GC-------- (--------) 841 --------AA UGACG|GU-A UCU-GAAGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UCUUUAAG-| UCC-CCUGUC AAAUACCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CUGG-AU-AG GCGGU--GGA -AAC-U|ACU -GA-G-CUGG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 AAGGAACACC AAA---GGC( GAAC)GC|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |GAG-AGACG AAAGCUAGGG GAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|GG CG-UUGUACG ---------- --------(- 1441 ------uauu gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UA| -CU-GCG--A A------UCC UUUU-----( 1741 GAA-A-)AAA AG-GAG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGUG GAUA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCCA-U--- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( uacucaaauu )--------- 2101 |GGAACCCUA AACAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGGGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACGCUC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG GGACAGAGGG UC----GCGA CCCC------ ---------- 2281 ----(----G UGA-)----- ---------- ----GGGC-A AGCUAACC-U CAG-AAACUC 2341 GGCCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CACCGG(UC- -AGCCAU)AC GGCGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAU GGGAGCUGG- CCAUGCCCGA 2521 AGUCGUU--- ACCUC-AACC -(-----gcg a------)-G G-AGG-GGG- AU-GCCG-AA 2581 GG-CAGGGCU AGUGACUGGA GUGAAGUCGU AACAAGGUUG CCGUACU(nn nn)nnnnnnn 2641 nnnnnnnnnn nnnnnn--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.A.evec 2717 bp RNA RNA 11-JAN-191 DEFINITION Angiopteris evecta. ACCESSION No information KEYWORDS No information. SOURCE Angiopteris evecta. ORGANISM Angiopteris evecta. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U24580 LOCUS AEU24580 1447 bp DNA PLN 02-AUG-1995 DEFINITION Angiopteris evecta chloroplast 16S rRNA gene, partial sequence. ACCESSION U24580 KEYWORDS . SOURCE Angiopteris evecta. ORGANISM Chloroplast Angiopteris evecta Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Embryophyta; Filicophyta; Filicopsida; Marattiales; Marattiaceae; Angiopteris. REFERENCE 1 (bases 1 to 1447) AUTHORS Manhart,J.R. TITLE Chloroplast 16S rDNA sequences and phylogenetic relationships of fern allies and ferns JOURNAL Unpublished (1995) REFERENCE 2 (bases 1 to 1447) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (03-APR-1995) James R. Manhart, Biology, Texas A&M University, Department of Biology, Texas A&M University, College Station, TX 77843-3258, USA COMMENT NCBI gi: 924732 FEATURES Location/Qualifiers source 1..1447 /organism="Angiopteris evecta" /chloroplast rRNA <1..>1447 /product="16S rRNA" BASE COUNT 364 a 345 c 468 g 270 t ORIGIN BASE COUNT 364 a 345 c 468 g 270 t 1270 others ORIGIN 1 |--------- nnnnnnnnnn nnn-nn(n-n n)nnnn|nnn nnnnnnnnnn nnC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGGACG|G G--------- ----aagcau c(cu------ 121 ---------- --ugu----- )gauguuu-- ---------- ------CC-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGGACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CC-CCAU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---GAAAA-- ---------- ---------- 481 GGA------- ------(--- -----g-gaa -------)-- -------|-- --UCCGCCCA 541 AGGA-GGG|G -CUUGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-CAAU GG)-CUUACC 601 AA|GGCGACG AU|CAGUAGC UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-G-C U-GACGGA|G CAAUGCCGCG UGGAGGUAGA AGGCC(---C 781 ACG--)GG-U C--GUAAACU CC|UUUU-CU CAGAGAAGAA GC-------- (--------) 841 --------AA UGACG|GU-A UCU-GAGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUCUUAAG-| UCC-GCCGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-AG GCGGU--GGA -AAC-U|ACC -AA-G-CUGG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 AAAGAACACC AAU---GGC( GAAA)GC|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |GAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|AG CG-UUGUGCG ---------- --------(- 1441 ------uauc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-GUG--A A------UCC UUUU-----( 1741 GAA-A-)GAG AG-GAG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCG GAUA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCCA-U--- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( uauugaguuu )--------- 2101 |GGAACCCUA AACAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG GGACAAAGGG UC----GCGA CCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGC-A AGCUAACC-U CAA-AAACUC 2341 GGCCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAU GGGAGCUGG- CCAUGCCCGA 2521 AGUCGUU--- ACCUU-AACC -(-----gcg a------)-G G-AGG-GGG- AU-GCCG-AA 2581 GG-CAGGGCU AGUGACUGGA GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 nnnnnnnnnn nnnnnn--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.B.bite 2717 bp RNA RNA 11-JAN-191 DEFINITION Botrychium biternatum. ACCESSION No information KEYWORDS No information. SOURCE Botrychium biternatum. ORGANISM Botrychium biternatum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U24581 LOCUS BBU24581 1425 bp DNA PLN 02-AUG-1995 DEFINITION Botrychium biternatum chloroplast 16S rRNA gene, partial sequence. ACCESSION U24581 KEYWORDS . SOURCE Botrychium biternatum. ORGANISM Chloroplast Botrychium biternatum Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Embryophyta; Filicophyta; Ophioglossopsida; Ophioglossales; Ophioglossaceae; Botrychium. REFERENCE 1 (bases 1 to 1425) AUTHORS Manhart,J.R. TITLE Chloroplast 16S rDNA sequences and phylogenetic relationships of fern allies and ferns JOURNAL Unpublished (1995) REFERENCE 2 (bases 1 to 1425) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (03-APR-1995) James R. Manhart, Biology, Texas A&M University, Department of Biology, Texas A&M University, College Station, TX 77843-3258, USA COMMENT NCBI gi: 924733 FEATURES Location/Qualifiers source 1..1425 /organism="Botrychium biternatum" /chloroplast rRNA <1..>1425 /product="16S rRNA" BASE COUNT 353 a 353 c 465 g 254 t ORIGIN BASE COUNT 353 a 353 c 465 g 254 t 1292 others ORIGIN 1 |--------- nnnnnnnnnn nnn-nn(n-n n)nnnn|nnn nnnnnnnnnn nnC-UGGCGG 61 CAUGCUU--A ACACAUGCGA GUCGGACG|G A--------- ----aagcau c(cc------ 121 ---------- --agu----- )gguguuu-- ---------- ------UC-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGGACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CC-CCAU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---GAAAA-- ---------- ---------- 481 GGA------- ------(--- -----g-gaa -------)-- -------|-- --UCCGCCCA 541 AGGA-GGG|G -CUUGCGU|- CUGAUUA-GC UGGUUGG-UG -AG(G-CAAU GG)-CUCACC 601 AA|GGCGACG AU|CAGUAGC UG|GUCC(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGCCGCG UGGAGGUAGA AGGCC(---C 781 ACG--)GG-U C--GUAAACU CC|UUUU-CC CGGAGAAGAA GC-------- (--------) 841 --------AA UGACG|GU-A UCU-GGGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUCUCAAG-| UCC-GCCGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-GG GCGGU--GGA -AAC-U|ACU -AA-G-CUGG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 AAGGAACACC AAC---GGC( GAAA)GC|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |GAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|AG CG-CUGCGCG ---------- --------(- 1441 ------uauc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-GUG--A A------UCC UCUU-----( 1741 GAG-A-)GAG GG-GAG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUGA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCCCG| UGUUUA-G-U 1921 UGCCA-U--- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( uauucaguuu )--------- 2101 |GGAACCCUA AACAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGGGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGA--CG GGACAAAGGG UC----GCGA CCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGC-A AGCUAACC-U CAA-AAACCC 2341 GACCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAU GGGAGCUGG- CCAUGCCCGA 2521 AGUCGUU--- ACCUC-AACC -(-----gca a------)-G G-AGG-GGG- GU-GCCG-AA 2581 GG-CAGGGCU AGUGACUGGA GUGAAGUCGU AACAAnnnnn nnnnnnn(nn nn)nnnnnnn 2641 nnnnnnnnnn nnnnnn--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.O.enge 2717 bp RNA RNA 11-JAN-191 DEFINITION Ophioglossum engelmannii. ACCESSION No information KEYWORDS No information. SOURCE Ophioglossum engelmannii. ORGANISM Ophioglossum engelmannii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U24589 LOCUS OEU24589 1425 bp DNA PLN 02-AUG-1995 DEFINITION Ophioglossum engelmannii chloroplast 16S rRNA gene, partial sequence. ACCESSION U24589 KEYWORDS . SOURCE Engelmann's adder's-tongue. ORGANISM Chloroplast Ophioglossum engelmannii Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Embryophyta; Filicophyta; Ophioglossopsida; Ophioglossales; Ophioglossaceae; Ophioglossum. REFERENCE 1 (bases 1 to 1425) AUTHORS Manhart,J.R. TITLE Chloroplast 16S rDNA sequences and phylogenetic relationships of fern allies and ferns JOURNAL Unpublished (1995) REFERENCE 2 (bases 1 to 1425) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (03-APR-1995) James R. Manhart, Biology, Texas A&M University, Department of Biology, Texas A&M University, College Station, TX 77843-3258, USA COMMENT NCBI gi: 924744 FEATURES Location/Qualifiers source 1..1425 /organism="Ophioglossum engelmannii" /chloroplast rRNA <1..>1425 /product="16S rRNA" BASE COUNT 352 a 353 c 464 g 256 t ORIGIN BASE COUNT 352 a 353 c 464 g 256 t 1292 others ORIGIN 1 |--------- nnnnnnnnnn nnn-nn(n-n n)nnnn|nnn nnnnnnnnnn nnC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGGACG|A A--------- ----aagcau c(cc------ 121 ---------- --agu----- )gguguuu-- ---------- ------UC-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGG------- --GGGGCCCA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CC-CCAU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---GAAAA-- ---------- ---------- 481 GGA------- ------(--- -----g-gaa -------)-- -------|-- --UCCGCCCA 541 AGGA-GGG|G -CUUGCGU|- CUGAUUA-GC UGGUUGG-UG -AG(G-CAAU GG)-CUCACC 601 AA|GGCGACG AU|CAGUAGC UG|GUCC(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGCCGCG UGGAGGUAGA AGGCC(---C 781 ACG--)GG-U C--GUAAACU CC|UUUU-CC CGGAGAAGAA GC-------- (--------) 841 --------AA UGACG|GU-A UCU-GGGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUUUCAAG-| UCU-GCCGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-GG GCGGU--GGA -AAC-U|ACU -AA-G-CUGG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 AAGGAACACC AAC---GGC( GAAA)GC|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |GAG-AGACG AAAGCUAGGG GAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCUGUAAA CGAUGGAU-- --AC|UA|AG CG-CUGUGCG ---------- --------(- 1441 ------uauc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-GUG--A A------UCC UCUU-----( 1741 GAA-A-)GAG GG-GAG---U G--CC----- ----(CUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUGA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCCCG| UGUUUA-G-U 1921 UGCCA-U--- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( uauucaguuu )--------- 2101 |GGAACCCUG AACAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGGGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGA--CG GGACAAAGGG UC----GCGA CCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGC-G AGCUAACC-U CAA-AAACCC 2341 GACCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAU GGGAGCUGG- CCAUGCCCGA 2521 AGUCGUU--- GCCCC-AACC -(-----gca a------)-G G-AGG-GGG- GU-GCCG-AA 2581 GG-CAGGGCU AGUGACUGGA GUGAAGUCGU AACAAnnnnn nnnnnnn(nn nn)nnnnnnn 2641 nnnnnnnnnn nnnnnn--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.P.nudu 2717 bp RNA RNA 11-JAN-191 DEFINITION Psilotum nudum. ACCESSION No information KEYWORDS No information. SOURCE Psilotum nudum. ORGANISM Psilotum nudum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U24590 LOCUS PNU24590 1452 bp DNA PLN 02-AUG-1995 DEFINITION Psilotum nudum chloroplast 16S rRNA gene, partial sequence. ACCESSION U24590 KEYWORDS . SOURCE Psilotum nudum. ORGANISM Chloroplast Psilotum nudum Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Embryophyta; Psilotophyta; Psilotopsida; Psilotales; Psilotaceae; Psilotum. REFERENCE 1 (bases 1 to 1452) AUTHORS Manhart,J.R. TITLE Chloroplast 16S rDNA sequences and phylogenetic relationships of fern allies and ferns JOURNAL Unpublished (1995) REFERENCE 2 (bases 1 to 1452) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (03-APR-1995) James R. Manhart, Biology, Texas A&M University, Department of Biology, Texas A&M University, College Station, TX 77843-3258, USA COMMENT NCBI gi: 924745 FEATURES Location/Qualifiers source 1..1452 /organism="Psilotum nudum" /chloroplast rRNA <1..>1452 /product="16S rRNA" BASE COUNT 375 a 349 c 460 g 268 t ORIGIN BASE COUNT 375 a 349 c 460 g 268 t 1265 others ORIGIN 1 |--------- nnnnnnnnnn nnn-nn(n-n n)nnnn|nnn nnnnnnnnnn nnC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGGACG|G A--------- ----aagcau c(cc------ 121 ---------- --agu----- )ggugcuu-- ---------- ------UC-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCCGC- CCUG------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGGAUA ACCG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CC-CCAU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAAA-- ---------- ---------- 481 GGA------- ------(--- ---gga-aua a------)-- -------|-- --UCCGCCCA 541 AGGA-GGG|G -CUUGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-CAAU GG)-CUCACC 601 AA|GGCGACG AU|CAGUAGC UG|GUCC(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGAGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGCCGCG UGGAGGUAGA AGGCC(---U 781 ACG--)GG-U C--GUAAACU CC|UUUU-CU CGGAGAAGAA GC-------- (--------) 841 --------AA UGACG|GU-A UCU-GAGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUCUCAAG-| UCC-GCCGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-GG GCGGU--GGA -AAC-U|ACU -AA-G-CUAG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 AAAGAACACC AAU---GGC( GAAA)GC|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |GAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|AG CG-UUGUGCG ---------- --------(- 1441 ------uauu gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UGCU-UUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUCCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA---ggu| -UU-GUG--A A------UCU UCUU-----( 1741 CAA-A-)AGG AA-GAG---U U--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCA GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUAGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCCA-U--- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( uacugaguuu )--------- 2101 |GGAACCCUA AACAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA UGUC-AA--G UCGGCAUGCC CCUUACGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGA--CG GGACAAAGGG UC----GCGA CCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGC-A AGCUAACC-U CAA-AAACCC 2341 GACCCCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU AC--GUU--- ---------- 2461 -------CUC GGGCCUUGUA CACACCGCCC GUCACACUAU GGGAGCUGA- CCAUGCCCGA 2521 AGUCAUU--- ACCCU-AACC -(-----gca a------)-G G-AGG-GGG- AU-GCCG-AA 2581 GG-CAGGGCU AGUGACUGGA GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 nnnnnnnnnn nnnnnn--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.T.obla 2717 bp RNA RNA 11-JAN-191 DEFINITION Tmesipteris oblanceolata. ACCESSION No information KEYWORDS No information. SOURCE Tmesipteris oblanceolata. ORGANISM Tmesipteris oblanceolata. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U24595 LOCUS TOU24595 1436 bp DNA PLN 02-AUG-1995 DEFINITION Tmesipteris oblanceolata chloroplast 16S rRNA gene, partial sequence. ACCESSION U24595 KEYWORDS . SOURCE Tmesipteris oblanceolata. ORGANISM Chloroplast Tmesipteris oblanceolata Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Embryophyta; Psilotophyta; Psilotopsida; Psilotales; Psilotaceae; Tmesipteris. REFERENCE 1 (bases 1 to 1436) AUTHORS Manhart,J.R. TITLE Chloroplast 16S rDNA sequences and phylogenetic relationships of fern allies and ferns JOURNAL Unpublished (1995) REFERENCE 2 (bases 1 to 1436) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (03-APR-1995) James R. Manhart, Biology, Texas A&M University, Department of Biology, Texas A&M University, College Station, TX 77843-3258, USA COMMENT NCBI gi: 924749 FEATURES Location/Qualifiers source 1..1436 /organism="Tmesipteris oblanceolata" /chloroplast rRNA <1..>1436 /product="16S rRNA" BASE COUNT 376 a 345 c 448 g 267 t ORIGIN BASE COUNT 376 a 345 c 448 g 267 t 1281 others ORIGIN 1 |--------- nnnnnnnnnn nnn-nn(n-n n)nnnn|nnn nnnnnnnnnn nnC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGGACG|G A--------- --a-agcauc c(ca------ 121 ---------- --gu------ )gggaugc-- -uu------- ------UC-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCCGC- CCUG------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGGAUA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CC-CCAU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAAA-- ---------- ---------- 481 GGAU------ ------(--- -----g-cau a------)-- -------|-- -AUCCGCCCA 541 AGGA-GGG|G -CUUGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-CAAU GG)-CUCACC 601 AA|GGCGACG AU|CAGUAGC UG|GUCC(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGAGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGCCGCG UGGAGGAAGA AGGCC(---U 781 ACG--)GG-U C--GUAAACU CC|UUUU-CU CGGAGAAGAA GC-------- (--------) 841 --------AA UGACG|GU-A UCU-GAGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUCUCAAG-| UCC-GCCGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-GG GCGAU--GGA -AAC-U|ACU -AA-G-CUAG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 AAAGAACACC AAU---GGC( GAAA)GC|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |GAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|AG CG-UUGUGCG ---------- --------(- 1441 ------uauu gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UGCU-UUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUCCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA--gguu| -UU-GUG--A A------UCU UCUU-----( 1741 CAA-A-)AGG AA-GAG---U U--UCu---- ----(uucaa -----)c--- ----gGGAA- 1801 ---------- -----|CACA GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUAGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCCA-U--- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( uacugaguuu )--------- 2101 |GGAACCCUA AACAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA UGUC-AA--G UCGGCAUGCC CCUUACGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGA--CG GGACAAAGGG UC----GCGA CCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGC-A AGCUAACC-U CAA-AAACCC 2341 GACCCCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU AC--GUU--- ---------- 2461 -------CUC GGGCCUUGUA CACACCGCCC GUCACACUAU GGGAGCUGA- CCAUGCCCGA 2521 AGUCGUU--- ACCCU-AACC -(-----gca a------)-G G-AGG-GGG- AU-GCCG-AA 2581 GG-CAGGGCU AGUGACUGGA GUGAAGUCGU AACAAnnnnn nnnnnnn(nn nn)nnnnnnn 2641 nnnnnnnnnn nnnnnn--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.J.virg 2717 bp RNA RNA 11-JAN-191 DEFINITION Juniperus virginiana. ACCESSION No information KEYWORDS No information. SOURCE Juniperus virginiana. ORGANISM Juniperus virginiana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U24586 LOCUS JVU24586 1454 bp DNA PLN 02-AUG-1995 DEFINITION Juniperus virginiana chloroplast 16S rRNA gene, partial sequence. ACCESSION U24586 KEYWORDS . SOURCE red cedar. ORGANISM Chloroplast Juniperus virginiana Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Embryophyta; Pinophyta; Coniferopsida; Coniferales; Cupressaceae; Juniperus. REFERENCE 1 (bases 1 to 1454) AUTHORS Manhart,J.R. TITLE Chloroplast 16S rDNA sequences and phylogenetic relationships of fern allies and ferns JOURNAL Unpublished (1995) REFERENCE 2 (bases 1 to 1454) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (03-APR-1995) James R. Manhart, Biology, Texas A&M University, Department of Biology, Texas A&M University, College Station, TX 77843-3258, USA COMMENT NCBI gi: 924740 FEATURES Location/Qualifiers source 1..1454 /organism="Juniperus virginiana" /chloroplast rRNA <1..>1454 /product="16S rRNA" BASE COUNT 387 a 327 c 446 g 294 t ORIGIN BASE COUNT 387 a 327 c 446 g 294 t 1263 others ORIGIN 1 |--------- nnnnnnnnnn nnn-nn(n-n n)nnnn|nnn nnnnnnnnnn nnC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGAACG|G G--------- --------aa g(ug------ 121 ---------- --gug----- )uuu------ ---------- ------CC-- AGU--GGCGA 181 ACGGGUGAGU AA-UGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGAACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -UUGCUAAUA CC-CCAU-AG aauuuaguac cucuacgagg ugagguag-- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAAG-- ---------- ---------- 481 GGA------- ------(--- -----g-gaa -------)-- -------|-- --UCCGCCCA 541 AGGA-GGG|G -CUCACGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-CAAU GG)-CUUACC 601 AA|GGCUCCG AU|CAGUAGU UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGAGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGCCGCG UGAAGGAAGA AGGCU(---C 781 ACG--)GG-U C--GUAAACU UC|UUUU-CU CGGAGAAGAA UA-------- (--------) 841 --------AA UGACG|GU-A UCU-GAGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) AACAGAG|GA UGCAAGCGUU AU-CCGGAAU UAUUGGGC|G 961 UAAAGUGUCU GUAGGUG|GC UUUUCAAG-| UCC-GUCGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-AG GCGGU--GGA -AAC-U|AUU -AA-G-CUAG AG-UA|CGGU 1141 A-----GAGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUUG AGA---UCGG 1201 GAGGAACACC AAG---GGC( GAAA)GC|A| CUCUG-CUG| GGCCG--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACACU 1321 |CAG-AGACG AAAGCUAGGG GAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|GG UG-CUGUGCG ---------- --------(- 1441 ------uauc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUAUAG UACU-GCAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG AAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAAAG)CG 1681 AAGAACCUUA CCAGGGAUUG ACA----UG| -CC-GCG--A A------UCC UUUU-----( 1741 GAA-A-)AAG AG-GAG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-UUCGU 1861 |GCC(GCAA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCCA-U--- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( ---aaaguuu )--------- 2101 |GGAACUCUG AACAGACUAU CGGU(GUUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA UGUC-AA--G UCAUCAUGCC CCUUAUACCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG GGACAAAGAG UU----GCGA CCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGU-A AGCUAACC-U CAA-AAACCU 2341 GGCCUCAAUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGUAGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU UC--GUU--- ---------- 2461 -------CUC GGGCCUUGUA CACACCGCCC GUCACACUAG GGAAGUGUG- CCAUGCUCGA 2521 AGUCAUU--- AUCUU-AACC -(-----gca a------)-G G-AGG-GAG- AU-GCCC-AA 2581 GG-CACGGCU AGUGACUGGA GUGAAGUCGU AACAAGGUAG CCGUACU(nn nn)nnnnnnn 2641 nnnnnnnnnn nnnnnn--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.P.thun 2717 bp RNA RNA 11-JAN-191 DEFINITION Chloroplast Pinus thunbergii. ACCESSION No information KEYWORDS No information. SOURCE Chloroplast Pinus thunbergii. ORGANISM Chloroplast Pinus thunbergii. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: D17510 LOCUS PINCPTRPG 119707 bp ds-DNA PLN 13-AUG-1994 DEFINITION Complete sequence of black pine (Pinus thunbergii) chloroplast DNA. ACCESSION D17510 KEYWORDS 16S ribosomal RNA; 23S ribosomal RNA; 4.5S ribosomal RNA; 5S ribosomal RNA; H+ - K+ ATPase beta subunit; RNA polymerase alpha-subunit; RNA polymerase beta subunit; RNA polymerase beta' subunit; RNA polymerase beta-2 subunit; RubisCO large subunit; cytochrome B6; cytochrome f; initiation factor; maturase; protochlorophyllide reductase; ribosomal protein L14; ribosomal protein L16; ribosomal protein L20; ribosomal protein L22; ribosomal protein L23; ribosomal protein L32; ribosomal protein L33; ribosomal protein L36; ribosomal protein S11; ribosomal protein S12; ribosomal protein S14; ribosomal protein S15; ribosomal protein S18; ribosomal protein S19; ribosomal protein S2; ribosomal protein S3; ribosomal protein S4; ribosomal protein S7; ribosomal protein S8. SOURCE Chloroplast Pinus thunbergii (organelle Chloroplast Pinus thunbergii) DNA. ORGANISM Chloroplast Pinus thunbergii Eukaryota; Plantae; Embryobionta; Pinophyta; Pinicae; Pinatae; Pinaceae. REFERENCE 1 (sites) AUTHORS Tsudzuki,J., Nakashima,K., Tsudzuki,T., Hiratsuka,J., Shibata,M., Wakasugi,T. and Sugiura,M. TITLE Chloroplast DNA of black pine retains a residual inverted repeat lacking rRNA genes: nucleotide sequences of trnQ, trnK, psbA, trnI and trnH and the absence of rps16 JOURNAL Mol. Gen. Genet. 232, 206-214 (1993) STANDARD full automatic REFERENCE 2 (sites) AUTHORS Wakasugi,T., Tsudzuki,J., Ito,S., Nakashima,K., Tsudzuki,T. and Sugiura,M. TITLE Loss of ndh genes as revealed by sequencing the entire chloroplast genome of black pine, Pinus thunbergii JOURNAL Unpublished (1994) STANDARD full automatic REFERENCE 3 (bases 1 to 119707) AUTHORS Tsudzuki,J., Ito,S., Tsudzuki,T., Wakasugi,T. and Sugiura,M. TITLE A new gene encoding tRNA pro (GGG) is present in the chloroplast genome of black pine: a compilation of 32 tRNA genes from black pine chloroplasts JOURNAL Curr. Genet. 26, 153-158 (1994) STANDARD full automatic COMMENT Submitted (27-Aug-1993) to DDBJ by: Masahiro Sugiura Center for Gene Reseach Nagoya University Chikusa-ku, Nagoya 464-01 Japan Phone: 052-781-5111 x3448 Fax: 052-782-3849. NCBI gi: 529643 FEATURES Location/Qualifiers source 1..119707 /organism="Chloroplast Pinus thunbergii" /chloroplast /sequenced_mol="DNA" BASE COUNT 36668 a 23069 c 23013 g 36957 t ORIGIN BASE COUNT 376 a 365 c 474 g 275 t 1227 others ORIGIN 1 |~~~~~~~~~ ~~CUCAUGGA GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGGACG|G G--------- --------aa g(ug------ 121 ---------- --gug----- )uuu------ ---------- ------CC-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGAACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CC-CCAU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAA--- ---------- ---------- 481 GGA------- ------(--- -------GGA A------)-- -------|-- --UCCGCCCA 541 AGGAG-GG-G C-UCGCGU|- CUGAUUA-GU UAGUUGG-UG -AG(G-CAAU GG)-CUUACC 601 AA|GGCGACG AU|CAGUAGC UG|GUCC(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UAC-G)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGCCGCG UGAAGGCAGA AGGCC(---C 781 ACG--)GG-U C--AUGAACU UC|UUUU-CU CGGAGAAGAA AA-------- (--------) 841 --------AA UGACG|GU-A UCU-GAGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUUUCAAG-| UCC-GCCGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-AG GCGGU--GGA -AAC-U|ACC -AA-G-CUGG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUUG AGA---UCGG 1201 AAAGAACACC AAC---GGC( GAAA)GC|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |GAG-AGACG AAAGCUAGGG GAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|AG UG-CUGUGCG ---------- --------(- 1441 ------uauc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGCGCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU CAAUUCG-(A UGCAAAG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-GUG--A A------UCC UCCC-----( 1741 GAA-A-)GAG AG-GAG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCCa----- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( gcauuuaguu )--------u 2101 |GGAACCCUG AACAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAUCAUGCC CCUUACGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGAC--CG GGACAAAGGG UC----GCGA CCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGC-A AGCUAACC-U CAA-AAACCC 2341 GGCCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAU GGGAGCUGG- CCAUGCCCCA 2521 AGUCGUU--- ACCUU-AACC -(-----gca a------)-G G-AGG-GGG- AU-GCCG-AA 2581 GG-CUGGGCU AGUGACUGGA GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUUU--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.E.trif 2717 bp RNA RNA 11-JAN-191 DEFINITION Ephedra trifurca. ACCESSION No information KEYWORDS No information. SOURCE Ephedra trifurca. ORGANISM Ephedra trifurca. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U24584 LOCUS ETU24584 1428 bp DNA PLN 02-AUG-1995 DEFINITION Ephedra trifurca chloroplast 16S rRNA gene, partial sequence. ACCESSION U24584 KEYWORDS . SOURCE Ephedra trifurca. ORGANISM Chloroplast Ephedra trifurca Eukaryotae; mitochondrial eukaryotes; eukaryote crown group; Chlorophyta/Embryophyta group; Charophyta/Embryophyta group; Embryophyta; Pinophyta; Gnetopsida; Ephedrales; Ephedraceae; Ephedra. REFERENCE 1 (bases 1 to 1428) AUTHORS Manhart,J.R. TITLE Chloroplast 16S rDNA sequences and phylogenetic relationships of fern allies and ferns JOURNAL Unpublished (1995) REFERENCE 2 (bases 1 to 1428) AUTHORS Manhart,J.R. TITLE Direct Submission JOURNAL Submitted (03-APR-1995) James R. Manhart, Biology, Texas A&M University, Department of Biology, Texas A&M University, College Station, TX 77843-3258, USA COMMENT NCBI gi: 924738 FEATURES Location/Qualifiers source 1..1428 /organism="Ephedra trifurca" /chloroplast rRNA <1..>1428 /product="16S rRNA" BASE COUNT 371 a 322 c 446 g 289 t ORIGIN BASE COUNT 371 a 322 c 446 g 289 t 1289 others ORIGIN 1 |--------- nnnnnnnnnn nnn-nn(n-n n)nnnn|nnn nnnnnnnnnn nnC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGAACG|G G--------- --------aa g(ug------ 121 ---------- --gug----- )uuu------ ---------- ------CC-- GGU--GGCGG 181 ACGGGUGAGU AA-UGCGUGA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGAACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CAGCUAAUA CC-CCAU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAA--- ---------- ---------- 481 GGA------- ------(--- -----g-gaa -------)-- -------|-- --UCUGCCCA 541 AGGA-GGG|G -CUCACGU|- CUGAUUA-GU UAGUUGG-UG -AG(G-CAAU GG)-CUUACC 601 AA|GGCGACG AU|CAGUAGC UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGCCGCG UGAAGGCAGA AGGCC(---U 781 ACG--)GG-U U--GUGAACU UC|UUUU-CU CGGAGAAGAA GC-------- (--------) 841 --------AA UGACG|GU-A UCU-GAGGAA -UAAGCAUC| GGCC-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACAGAG|GA UGCAAGCGUU AU-CCGGAUU UAUUGGGC|G 961 UAAAGUGUCU UUAGGUG|GC UUUUCAAG-| UCC-UCCGUU AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-AG GCGUU--GGA -AAC-U|ACA -AA-G-CUAG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGCUG AGA---UCGG 1201 AAAGAACACC AAU---GGC( GAAA)GC|A| CUCUG-CUG| GACCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |GAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA GAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CAAUGGAU-- --AC|UA|AG UG-CUGUGCG ---------- --------(- 1441 ------uauc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UGCU-GUAGU (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUAGUU UAAUUCG-(A UGCAAAG)CG 1681 AAGAACCUUA CCAGGGAUUG ACA----UG| -CC-GUG--A A------UCC UCCU-----( 1741 GAA-A-)AGG GG-GAG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CACG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUAG) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUU| UGUUUA-G-U 1921 UGCCA-U--- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( cguguaguuu )--------- 2101 |GGAACCCUA AACAGACUGC UGGC(GAUGA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA GGUC-AA--G UCAUCAUGCC CCUUAUACCC UGGGCCAC-A 2221 CACAUGCUAC AAUGGC--CG GGAUAAAGGG UC----GCGA CCUC------ ---------- 2281 ----(----G UGA-)----- ---------- ----GGGC-A AGCUAAUC-U CAA-AAACCC 2341 GGUCUCAGUU CGAAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGCAGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU UC--GUU--- ---------- 2461 -------CUC GGGCCUUGUA CACACCGCCC GUCACACUAU AGGAGUUGG- CCAUGUUUGA 2521 AGUCUUU--- ACCUU-AACC -(-----gua a------)-G G-AGG-GGG- AU-GACA-AA 2581 GG-CAGGGUU AGUGACUGGA GUGAAGUCGU AACAAGGUAG CCGUACU(nn nn)nnnnnnn 2641 nnnnnnnnnn nnnnnn--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.O.sati 2717 bp RNA RNA 11-JAN-191 DEFINITION Oryza sativa. ACCESSION No information KEYWORDS No information. SOURCE Oryza sativa. ORGANISM Oryza sativa. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X15901 X15901; Mol. Gen. Genet. 217:185-194(1989). BASE COUNT 376 a 356 c 474 g 285 t 1226 others ORIGIN 1 |~~~~~~~~~ ~UCUCAUGGA GAG-UU(C-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGAACG|G G--------- -------aag u(gg------ 121 ---------- --u------- )guuu----- ---------- ------CC-- AGU--GGCGA 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGAACA ACAA------ ---------- --------CU G(GAAA)CGG 361 -UUGCUAAUA CC-CCGU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAA--- ---------- ---------- 481 GGA------- ------(--- -------GAA A------)-- -------|-- --UCCGCCCA 541 AGGA-GGG|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-CAAU AG)-CUUACC 601 AA|GGCGAUG AU|CAGUAGC UG|GUCC(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGCCGCG UGGAGGUGGA AGGCC(---C 781 ACG--)GG-U C--GUCAACU UC|UUUU-CU CGGAGAAGAA AC-------- (--------) 841 --------AA UGACG|GU-A UCU-GAGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUUUCAAG-| UCC-GCCGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-AG GCGGU--GGA -AAC-U|ACC -AA-G-CUGG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCAUUG AGA---UCGG 1201 AAAGAACACC AAC---GGC( GAAA)GC|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |GAG-AGACG AAAGCUAGGG GAGCAAAUGG G(AUU-A-GA GAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|GG UG-CUGUGCG ---------- --------(- 1441 ------acuc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAAAG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-GCG--A A------UCC UCUU-----( 1741 GAA-A-)GAG AG-GGG---U G--CC----- ----(CUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CUC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCCa----- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( cuau-gaguu )--------u 2101 |GGAACCCUG AACAGACCGC CGGU(GUUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GAGAGGAUGA GGCC-AA--G UCAUCAUGCC CCUUAUGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGG--CG GGACAAAGGG UC----GCGA UCUC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGU-G AGCUAACU-C CAA-AAACCC 2341 GUCCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGCAGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAU AGGAGCUGG- CCAUGUUUGA 2521 AGUCAUU--- ACCCUUAACC -(-----gua a------)-G G-AGG-GGG- AU-GCCU-AA 2581 GG-CUAGGCU UGCGACUGGA GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUUU--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.Z.ma.1 2717 bp RNA RNA ~?~???? DEFINITION chloroplast,Zea mays(maize). ACCESSION No information KEYWORDS No information. SOURCE chloroplast,Zea mays(maize). ORGANISM chloroplast,Zea mays(maize). REFERENCE 1 (bases 1 to 1372) AUTHORS No information JOURNAL ***FINISH*** Nature 283:739(1980) STANDARD No information COMMENTS Organism information Culture collection: ???? Sequence information (bases 1 to 2717) Corresponding GenBank entry: Z00028 Phylo:Eubacteria,Cyanobacteria,chloroplast BASE COUNT 375 a 356 c 476 g 283 t 1227 others ORIGIN 1 |~~~~~~~~~ ~~CUCAUGGA GAG-UU(C-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGAACG|G G--------- -------aag u(gg------ 121 ---------- --u------- )guuu----- ---------- ------CC-- AGU--GGCGA 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGAACA ACAA------ ---------- --------CU G(GAAA)CGG 361 -UUGCUAAUA CC-CCGU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAA--- ---------- ---------- 481 GGA------- ------(--- -------GAA A------)-- -------|-- --UCCGCCCA 541 AGGA-GGG|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-CAAU AG)-CUUACC 601 AA|GGCGAUG AU|CAGUAGC UG|GUCC(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGCCGCG UGGAGGUGGA AGGCC(---U 781 ACG--)GG-U C--GUCAACU UC|UUUU-CU CGGAGAAGAA AC-------- (--------) 841 --------AA UGACG|GU-A UCU-GAGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUUUCAAG-| UCC-GCCGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-AG GCGGU--GGA -AAC-U|ACC -AA-G-CUGG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCAUUG AGA---UCGG 1201 AAAGAACACC AAC---GGC( GAAA)GC|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |GAG-AGACG AAAGCUAGGG GAGCAAAUGG G(AUU-A-GA GAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|GG UG-CUGUGCG ---------- --------(- 1441 ------acuc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAAGG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-GCG--A A------UCC UCUU-----( 1741 GAA-A-)GAG AG-GGG---U G--CC----- ----(CUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CUC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCCa----- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( cuau-gaguu )--------u 2101 |GGAACCCUG AACAGACCGC CGGU(GUUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GAGAGGAUGA GGCC-AA--G UCAUCAUGCC CCUUAUGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGG--CG GGACAAAGGG UC----GCGA UCUC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGU-G AGCUAACU-C CAA-AAACCC 2341 GUCCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGCAGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGCGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAU AGGAGCUGG- CCAGGUUUGA 2521 AGUCAUU--- ACCCUuAACC -(-----gua a------)-G G-AGG-GGG- AU-GCCU-AA 2581 GG-CUAGGCU UGCGACUGGA GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUUU--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.Z.ma.2 2717 bp RNA RNA 17-FEB-1997 DEFINITION Chloroplast Zea mays.; 16S rRNA; 23S rRNA; 4.5S rRNA; 5S rRNA; ATPase; atpE gene; atpI gene; cemA gene; clpP gene; cytochrome B6; cytochrome bf complex; cytochrome f; infA gene; initiation factor 1; junction LSC-IR; matK gene; NADH dehydrogenase; ndhB gene; ndhC gene; ndhD gene; ndhF gene; ndhJ gene; ndhK gene; petA gene; petB gene; petD gene; petE gene; psaA gene; psaB gene; psaI gene; psaJ gene; psbA gene; psbB gene; psbC gene; psbD gene; psbF gene; psbH gene; psbI gene; psbJ gene; psbK gene; psbN gene; PSI P700 apoprotein A1; PSI P700 apoprotein A2; PSII component; PSII cytochrome b559; PSII D2 protein; PSII I protein; PSII K protein; PSII L protein; PSII protein; rbcL gene; ribosomal protein L14; ribosomal protein L16; ribosomal protein L2; ribosomal protein L20; ribosomal protein L22; ribosomal protein L23; ribosomal protein L32; ribosomal protein L33; ribosomal protein L36; ribosomal protein S11; ribosomal protein S12; ribosomal protein S14; ribosomal protein S15; ribosomal protein S16; ribosomal protein S18; ribosomal protein S19; ribosomal protein S2; ribosomal protein S3; ribosomal protein S4; ribosomal protein S7; ribosomal protein S8; ribosomal RNA; RNA polymerase; RNA-Asparagine; rpl14 gene; rpl16 gene; rpl2 gene; rpl20 gene; rpl22 gene; rpl23 gene; rpl32 gene; rpl33 gene; rpl36 gene; rpoA gene; rpoB gene; rpoC1 gene; rpoC2 gene; rps11 gene; rps12 gene; rps14 gene; rps15 gene; rps16; rps18 gene; rps19 gene; rps2 gene; rps3 gene; rps4 gene; rps7 gene; rps8 gene; Rubisco; tRNA-Alanine; tRNA-Arginine; tRNA-Asparagine; tRNA-Aspartic acid; tRNA-Cysteine; tRNA-formil Methionine; tRNA-Glutamic acid; tRNA-Glutamine; tRNA-Glycine; tRNA-Histidine; tRNA-Isoleucine; tRNA-Leucine; tRNA-Lysine; tRNA-Methionine; tRNA-Phenylalanine; tRNA-Proline; tRNA-Serine; tRNA-Threonine; tRNA-Tryptophan; tRNA-Tyrosine; tRNA-Valine. ACCESSION X86563 KEYWORDS 16S rRNA; 23S rRNA; 4.5S rRNA; 5S rRNA; ATPase; atpE gene; atpI gene; cemA gene; clpP gene; cytochrome B6; cytochrome bf complex; cytochrome f; infA gene; initiation factor 1; junction LSC-IR; matK gene; NADH dehydrogenase; ndhB gene; ndhC gene; ndhD gene; ndhF gene; ndhJ gene; ndhK gene; petA gene; petB gene; petD gene; petE gene; psaA gene; psaB gene; psaI gene; psaJ gene; psbA gene; psbB gene; psbC gene; psbD gene; psbF gene; psbH gene; psbI gene; psbJ gene; psbK gene; psbN gene; PSI P700 apoprotein A1; PSI P700 apoprotein A2; PSII component; PSII cytochrome b559; PSII D2 protein; PSII I protein; PSII K protein; PSII L protein; PSII protein; rbcL gene; ribosomal protein L14; ribosomal protein L16; ribosomal protein L2; ribosomal protein L20; ribosomal protein L22; ribosomal protein L23; ribosomal protein L32; ribosomal protein L33; ribosomal protein L36; ribosomal protein S11; ribosomal protein S12; ribosomal protein S14; ribosomal protein S15; ribosomal protein S16; ribosomal protein S18; ribosomal protein S19; ribosomal protein S2; ribosomal protein S3; ribosomal protein S4; ribosomal protein S7; ribosomal protein S8; ribosomal RNA; RNA polymerase; RNA-Asparagine; rpl14 gene; rpl16 gene; rpl2 gene; rpl20 gene; rpl22 gene; rpl23 gene; rpl32 gene; rpl33 gene; rpl36 gene; rpoA gene; rpoB gene; rpoC1 gene; rpoC2 gene; rps11 gene; rps12 gene; rps14 gene; rps15 gene; rps16; rps18 gene; rps19 gene; rps2 gene; rps3 gene; rps4 gene; rps7 gene; rps8 gene; Rubisco; tRNA-Alanine; tRNA-Arginine; tRNA-Asparagine; tRNA-Aspartic acid; tRNA-Cysteine; tRNA-formil Methionine; tRNA-Glutamic acid; tRNA-Glutamine; tRNA-Glycine; tRNA-Histidine; tRNA-Isoleucine; tRNA-Leucine; tRNA-Lysine; tRNA-Methionine; tRNA-Phenylalanine; tRNA-Proline; tRNA-Serine; tRNA-Threonine; tRNA-Tryptophan; tRNA-Tyrosine; tRNA-Valine. SOURCE Chloroplast Zea mays. ORGANISM Chloroplast Zea mays. REFERENCE 1 (bases 1 to 140387) AUTHORS Maier,R.M., Neckermann,K., Igloi,G.L. and Kossel,H. TITLE Complete sequence of the maize chloroplast genome: gene content, hotspots of divergence and fine tuning of genetic information by transcript editing JOURNAL J. Mol. Biol. 251 (5), 614-628 (1995) STANDARD No information REFERENCE 2 (bases 1 to 140387) AUTHORS Neckermann,K. TITLE Direct Submission JOURNAL Submitted (25-APR-1995) K. Neckermann, Institut f. Biologie III, Schaenzlestr. 1, D- 79104 Freiburg i.Br., FRG STANDARD No information REFERENCE 3 (bases 1 to 140387) AUTHORS Rodermel,S.R. TITLE Nucleotide sequence of a maize chloroplast DNA fragment containing an inversion breakpoint, trnG (GCC), trnG (UCC), trnfM, and a trnG pseudogene JOURNAL Nucleic Acids Res. 20 (21), 5844 (1992) STANDARD No information REFERENCE 4 (bases 1 to 140387) AUTHORS Igloi,G.L., Meinke,A., Dory,I. and Kossel,H. TITLE Nucleotide sequence of the maize chloroplast rpo B/C1/C2 operon: comparison between the derived protein primary structures from various organisms with respect to functional domains JOURNAL Mol. Gen. Genet. 221 (3), 379-394 (1990) STANDARD No information REFERENCE 5 (bases 1 to 140387) AUTHORS Fish,L.E., Kuck,U. and Bogorad,L. TITLE Two partially homologous adjacent light-inducible maize chloroplast genes encoding polypeptides of the P700 chlorophyll a-protein complex of photosystem I JOURNAL J. Biol. Chem. 260 (3), 1413-1421 (1985) STANDARD No information REFERENCE 6 (bases 1 to 140387) AUTHORS Rodermel,S., Orlin,P. and Bogorad,L. TITLE The transcription termination region between two convergently-transcribed photoregulated operons in the maize plastid chromosome contains rps14, trnR (UCU) and a putative trnfM pseudogene JOURNAL Nucleic Acids Res. 15 (13), 5493 (1987) STANDARD No information REFERENCE 7 (bases 1 to 140387) AUTHORS Kangasjarvi,J., McCullough,A. and Gengenbach,B.G. TITLE Nucleotide sequence and transcription of maize plastid genome Bam HI fragment 14 containing ORF170 JOURNAL Plant Mol. Biol. 17 (3), 513-515 (1991) STANDARD No information REFERENCE 8 (bases 1 to 140387) AUTHORS Steinmuller,K., Ley,A.C., Steinmetz,A.A., Sayre,R.T. and Bogorad,L. TITLE Characterization of the ndhC-psbG-ORF157/159 operon of maize plastid DNA and of the cyanobacterium Synechocystis sp. PCC6803 JOURNAL Mol. Gen. Genet. 216 (1), 60-69 (1989) STANDARD No information REFERENCE 9 (bases 1 to 140387) AUTHORS Erion,J.L. TITLE Characterization of the mRNA transcripts of the maize, ribulose-1, 5-bisphosphate carboxylase, large subunit gene JOURNAL Plant Mol. Biol. 4, 169-179 (1985) STANDARD No information REFERENCE 10 (bases 1 to 140387) AUTHORS Bowman,C.M., Barker,R.F. and Dyer,T.A. TITLE In wheat ctDNA, segments of ribosomal protein genes are dispersed repeats, probably conserved by nonreciprocal recombination JOURNAL Curr. Genet. 14 (2), 127-136 (1988) STANDARD No information REFERENCE 11 (bases 1 to 140387) AUTHORS Weglohner,W. and Subramanian,A.R. TITLE Nucleotide sequence of a region of maize chloroplast DNA containing the 3' end of clpP, exon 1 of rps12 and rpl20 and their cotranscription JOURNAL Plant Mol. Biol. 18 (2), 415-418 (1992) STANDARD No information REFERENCE 12 (bases 1 to 140387) AUTHORS Lukens,J.H. and Bogorad,L. TITLE Nucleotide sequence containing the maize chloroplast proline (UGG) and tryptophan (CCA) tRNA genes JOURNAL Nucleic Acids Res. 16 (11), 5192 (1988) STANDARD No information REFERENCE 13 (bases 1 to 140387) AUTHORS Rock,C.D., Barkan,A. and Taylor,W.C. TITLE The maize plastid psbB-psbF-petB-petD gene cluster: spliced and unspliced petB and petD RNAs encode alternative products JOURNAL Curr. Genet. 12 (1), 69-77 (1987) STANDARD No information REFERENCE 14 (bases 1 to 140387) AUTHORS Ruf,M. and Kossel,H. TITLE Structure and expression of the gene coding for the alpha-subunit of DNA-dependent RNA polymerase from the chloroplast genome of Zea mays JOURNAL Nucleic Acids Res. 16 (13), 5741-5754 (1988) STANDARD No information REFERENCE 15 (bases 1 to 140387) AUTHORS Kavousi,M., Giese,K., Larrinua,I.M., McLaughlin,W.E. and Subramanian,A.R. TITLE Nucleotide sequence and map positions of the duplicated gene for maize (Zea mays) chloroplast ribosomal protein L2 JOURNAL Nucleic Acids Res. 18 (14), 4244 (1990) STANDARD No information REFERENCE 16 (bases 1 to 140387) AUTHORS McLaughlin,W.E. and Larrinua,I.M. TITLE The sequence of the maize plastid encoded rpl 22 locus JOURNAL Nucleic Acids Res. 15 (10), 4356 (1987) STANDARD No information REFERENCE 17 (bases 1 to 140387) AUTHORS Maier,R.M., Neckermann,K., Hoch,B., Akhmedov,N.B. and Kossel,H. TITLE Identification of editing positions in the ndhB transcript from maize chloroplasts reveals sequence similarities between editing sites of chloroplasts and plant mitochondria JOURNAL Nucleic Acids Res. 20 (23), 6189-6194 (1992) STANDARD No information REFERENCE 18 (bases 1 to 140387) AUTHORS Giese,K., Subramanian,A.R., Larrinua,I.M. and Bogorad,L. TITLE Nucleotide sequence, promoter analysis, and linkage mapping of the unusually organized operon encoding ribosomal proteins S7 and S12 in maize chloroplast JOURNAL J. Biol. Chem. 262 (31), 15251-15255 (1987) STANDARD No information REFERENCE 19 (bases 1 to 140387) AUTHORS Strittmatter,G. and Kossel,H. TITLE Cotranscription and processing of 23S, 4.5S and 5S rRNA in chloroplasts from Zea mays JOURNAL Nucleic Acids Res. 12 (20), 7633-7647 (1984) STANDARD No information REFERENCE 20 (bases 1 to 140387) AUTHORS Fitzky,B. and Subramanian,A.R. TITLE Nucleotide sequence and map positions of the duplicated gene for chloroplast ribosomal protein S15 in Zea mays (maize) JOURNAL Nucleic Acids Res. 18 (11), 3407 (1990) STANDARD No information REFERENCE 21 (bases 1 to 140387) AUTHORS Weglohner,W. and Subramanian,A.R. TITLE Nucleotide sequence of maize chloroplast rpl32: completing the apparent set of plastid ribosomal protein genes and their tentative operon organization JOURNAL Plant Mol. Biol. 21 (3), 543-548 (1993) STANDARD No information REFERENCE 22 (bases 1 to 140387) AUTHORS Schantz,R. and Bogorad,L. TITLE Maize chloroplast genes ndhD, ndhE, and psaC. Sequences, transcripts and transcript pools JOURNAL Plant Mol. Biol. 11, 239-247 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X86563 Overlaps with:X60823, X05055, X01608, V00178, V00173, V00175, J01421, V00177, X04183, Z11973, M11592, X61188, J04502, X56673, M17842, Y00340, Y00375, X07864, J01424, V00176, X56522, X62370, X56521. BASE COUNT 375 a 356 c 476 g 284 t 1226 others ORIGIN 1 |--------- -uCUCAUGGA GAG-UU(C-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGAACG|G G--------- -------aag u(gg------ 121 ---------- --u------- )guuu----- ---------- ------CC-- AGU--GGCGA 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGAACA ACAA------ ---------- --------CU G(GAAA)CGG 361 -UUGCUAAUA CC-CCGU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAA--- ---------- ---------- 481 GGA------- ------(--- -------GAA A------)-- -------|-- --UCCGCCCA 541 AGGA-GGG|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-CAAU AG)-CUUACC 601 AA|GGCGAUG AU|CAGUAGC UG|GUCC(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGCCGCG UGGAGGUGGA AGGCC(---U 781 ACG--)GG-U C--GUCAACU UC|UUUU-CU CGGAGAAGAA AC-------- (--------) 841 --------AA UGACG|GU-A UCU-GAGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUUUCAAG-| UCC-GCCGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-AG GCGGU--GGA -AAC-U|ACC -AA-G-CUGG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCAUUG AGA---UCGG 1201 AAAGAACACC AAC---GGC( GAAA)GC|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |GAG-AGACG AAAGCUAGGG GAGCAAAUGG G(AUU-A-GA GAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|GG UG-CUGUGCG ---------- --------(- 1441 ------acuc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAAGG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-GCG--A A------UCC UCUU-----( 1741 GAA-A-)GAG AG-GGG---U G--CC----- ----(CUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CUC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCCa----- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( cuau-gaguu )--------u 2101 |GGAACCCUG AACAGACCGC CGGU(GUUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GAGAGGAUGA GGCC-AA--G UCAUCAUGCC CCUUAUGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGG--CG GGACAAAGGG UC----GCGA UCUC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGU-G AGCUAACU-C CAA-AAACCC 2341 GUCCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGCAGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGCGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAU AGGAGCUGG- CCAGGUUUGA 2521 AGUCAUU--- ACCCUuAACC -(-----gua a------)-G G-AGG-GGG- AU-GCCU-AA 2581 GG-CUAGGCU UGCGACUGGA GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUUU--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.D.caro 2717 bp RNA RNA 11-JAN-191 DEFINITION Daucus carota. ACCESSION No information KEYWORDS No information. SOURCE Daucus carota. ORGANISM Daucus carota. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X73670 ID CHDC16SRR standard; DNA; ORG; 2160 BP. XX AC X73670; XX DT 09-JUL-1993 (Rel. 36, Created) DT 09-JUL-1993 (Rel. 36, Last updated, Version 2) XX DE D.carota chloroplast gene for tRNA-Val, 16S rRNA and tRNA-Ile (exon DE 1) XX KW 16S ribosomal RNA; ribosomal RNA; transfer RNA; transfer RNA-Ile; KW transfer RNA-Val. XX OS Daucus carota OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; OC Rosidae; Apiales; Apiaceae. XX OG Chloroplast XX RN [1] RA Manna F.; RT "Nucleotide sequence of Daucus carota chloroplast 16S rRNA gene RT and its flanking regions"; RL Unpublished. XX RN [2] RP 1-2160 RA Manna F.; RT ; RL Submitted (25-JUN-1993) on tape to the EMBL Data Library by: RL F. Manna, Istituto Internazionale di Genetica e, Biofisica, C.N.R., RL VIA GUGLIELMO MARCONI, 12, 80125 Napoli, ITALY XX FH Key Location/Qualifiers FH FT tRNA 1..70 FT /product="tRNA-Val" FT source 1..2160 FT /organism="Daucus carota" FT /cultivar="S.Valery" FT /chloroplast FT rRNA 305..1792 FT /product="16S rRNA" FT tRNA 2114..>2160 FT /product="tRNA-Ile" FT /note="exon 1" XX SQ Sequence 2160 BP; 525 A; 497 C; 662 G; 448 T; 28 other; BASE COUNT 362 a 354 c 475 g 287 t 1239 others ORIGIN 1 |~~~~~~~~~ ~UCUCAUGGA GAG-UU(C-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGGAA--A ACACAUGCAA GUCGGACG|G G--------- -------aag u(gg------ 121 ---------- --u------- )guuu----- ---------- ------CC-- AGU--GGCGG 181 ACGGGACUGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGU------- --GGGGAACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CC-CCGU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAA--- ---------- ---------- 481 GGA------- ------(--- -------GGA A------)-- -------|-- --UCCGCCCG 541 AGGG-AGG|G GCUCGCGU|- CUGA-UA-GC UAGUUGG-UG -AG(G-CAAU AG)-CUUACC 601 AA|GGCGAUG AU|CAGUAGC UG|GUCC(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GC- --GACGGA|G CAAUGCCGCG UGGAGGUAGA AGGCC(---C 781 ACG--)GG-U C--GUGAACU UC|UUUU-CC CGGAGAAGAA GC-------- (--------) 841 --------AA UGACG|GU-A UCU-GGGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGUUUUAA-) ~~~~~~~|~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~|~ 961 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~G-| UCC-GCCGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-AG GCGGU--GGA -AAC-U|ACC -AA-G-CUGG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 AAAGAACACC AAC---GGC( GAAA)GC|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CAUUGACACU 1321 |GAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-AA UAC)-CCCAU UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|GG CG-CUGUGCG ---------- --------(- 1441 ------anuc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UGCU-GUAAC (UACC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCGC-GC ACA------- AUCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAAAG)CG 1681 AAGAACCUUA CCAUGGCUUG ACA----UG| -CC-GCG--A A------UCC UCUU-----( 1741 GAA-A-)GAG AG-GGG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGAAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCCa----- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( ucguugaguu )--------u 2101 |GGAACCCUG AACAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAUCAUGCC CCUUAUGCCC UUGGCGAC-A 2221 CUCGUGCUAC AAUGGC--CG GGACAAAGGG UU----GCGA UCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGU-G AGCUAACC-C CAA-AAACCC 2341 GUCCUCAGUU GGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU UC--GGU--- ---------- 2461 -------ACC GGGCCUUGUA CACACCGCCC GUCACACUAU GGGAGCUGG- CCAUGCCCGA 2521 AGUCGUU--- ACNCUUAACC -(-----gca a------)-G G-NGG-GGG- AU-GCCG-AA 2581 GC-AGNGGCU AGUGACUGGA GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUUUU-|c agggagagcu annnnnnaug cuuguugggu auuuugguuu 2701 gauacugcuu cacacc| // LOCUS chl.C.amer 2717 bp RNA RNA 11-JAN-191 DEFINITION Conopholis americana. ACCESSION No information KEYWORDS No information. SOURCE Conopholis americana. ORGANISM Conopholis americana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X58864 LOCUS CONRRN16S 1978 bp ds-DNA ORG 14-JUL-1992 DEFINITION C.americana plastid 16S rRNA gene and spacer region ACCESSION X58864 KEYWORDS 16S ribosomal RNA; ribosomal DNA intergenic spacer. SOURCE Conopholis americana DNA. ORGANISM Chloroplast Conopholis americana Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Asteridae; Scrophulariales; Orobanchaceae. REFERENCE 1 (bases 1 to 1978) AUTHORS Wimpee,C.F., Morgan,R. and Wrobel,R.L. TITLE An aberrant plastid ribosomal RNA gene cluster in the root parasite Conopholis americana JOURNAL Plant Mol. Biol. 18, 275-285 (1992) STANDARD simple staff_entry COMMENT *source: stage=fruit; *source: clone=B2; See X58863 for related sequence From EMBL entry CARRN16S; dated 25-FEB-1992. FEATURES Location/Qualifiers rRNA 94..1580 /product="16S ribosomal RNA" /gene="16S rRNA" misc_feature 1573..1580 /note="mRNA binding site" misc_feature 1581..>1978 /note="16S-23S gene spacer region" BASE COUNT 536 a 420 c 570 g 452 t ORIGIN BASE COUNT 364 a 352 c 474 g 297 t 1230 others ORIGIN 1 |~~~~~~~~~ ~UCUAAUGGA GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--G ACACAUGCAA GUCGGACG|G G--------- --------aa g(ug------ 121 ---------- --gugu---- )uuu------ ---------- ------CU-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGAACA ACAG------ ---------- --------CU G(GAAA)CGA 361 -CUGCUAAUA CC-UCGU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAA--- ---------- ---------- 481 GGC------- ------(--- -------GGA A------)-- -------|-- --UCCGCCCG 541 AGGA-GGG|G -CUUGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-CAAU AG)-CUUACC 601 AA|GGCGAUG AU|CAGUAGC UG|GUCC(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-G AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGCCGCG UGGAGGUAUA AGGCC(---C 781 ACG--)GG-U C--GUCAACU UC|UUUU-AC CUGAUAAGAA AC-------- (--------) 841 --------AA UGACG|GU-A UCU-GGUGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUUUUAUG-| UCC-GCCGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CUGG-AC-AG GCGGU--GGA -AAC-U|ACC -AA-G-CUGG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUCCCGG-UG GAGCG(GUGA AA)UGUUUAG AGA---UCGG 1201 GAAGAACACC AAC---GGC( GAAA)GC|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |GAG-AGACG AAAGCUAGGG GAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UG|GG CG-CUGUGCG ---------- --------(- 1441 ------uauc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUU (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAAAG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-AUG--A A------UCC UCUU-----( 1741 GAA-A-)GAG AG-GGG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGUG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CCC CUAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCCc----- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( -----uauuu )--------u 2101 |GGAACCCUG AGCAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCAGAGGAAG GUGAGGAUGA CGUC-AA--G UCAUCAUGCC CCUUAUGCCC UGGGCGAC-A 2221 CACGUGCUAC AACGGC--CG GGACAAAGGG UC----GCGA UCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGU-G AGCUAACC-C CCA-AAACCC 2341 GUCCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACGCUAU GGGAGCUGG- UCAUGCCCUA 2521 AGUCGUU--- AUCUU-AACC -(-----aca a------)-G G-AGG-GGG- AU-GCCG-AA 2581 GG-CAGGGCU AGUGACUGGA GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUUU--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.E.virg 2717 bp RNA RNA 11-JAN-191 DEFINITION Epifagus virginiana. ACCESSION No information KEYWORDS No information. SOURCE Epifagus virginiana. ORGANISM Epifagus virginiana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X62099 ID CHEVIARRN standard; DNA; ORG; 7395 BP. XX AC X62099; XX DT 16-JUN-1992 (Rel. 32, Created) DT 16-JUN-1992 (Rel. 32, Last updated, Version 2) XX DE E.virginiana plastid ribosomal RNA operon, trnI and trnA DE pseudogenes XX KW 16S ribosomal RNA; 23S ribosomal RNA; 4.5S ribosomal RNA; KW 5S ribosomal RNA; group II intron; Pseudogene; ribosomal RNA; KW transfer RNA-Ala; transfer RNA-Ile. XX OS Epifagus virginiana OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; OC Asteridae. XX OG Plastid XX RN [1] RP 1-7395 RA Wolfe K.H.; RT ; RL Submitted (05-SEP-1991) on tape to the EMBL Data Library by: RL K.H. Wolfe, Indiana University, Dept of Biology, Bloomington IN RL 47405, USA XX RN [2] RP 1-610, 1976-4164 RA Wolfe K.H., Katz-Downie D.S., Morden C.W., Palmer J.D.; RT "Evolution of the plastid ribosomal RNA Operon in a nongreen RT parasitic plant: Accelerated sequence evolution, promoter RT structure, and tRNA Pseudogenes"; RL Plant Mol. Biol. 18:1037-1048(1992). XX CC *source: clone=pEV300, pEV1300, pEV1310, pEV1320; CC *source: chromosome=plastid genome; XX CC See also X61368 for overlapping sequence XX FH Key Location/Qualifiers FH FT rRNA 570..2061 FT /gene="rrn16S" FT tRNA 2324..2370 FT /pseudo /note="exon 1" /gene="trnI(GAU)" FT intron 2371..3258 FT /note="pseudo group II intron" FT tRNA 3259..3292 FT /pseudo /note="exon 2" /gene="trnI(GAU)" FT tRNA 3346..3388 FT /pseudo /gene="trnA(UGC)" /note="exon 1" FT intron 3389..3862 FT /note="pseudo group II intron" FT tRNA 3863..3884 FT /pseudo /gene="trnA(UGC)" /note="exon 2" FT rRNA 4071..6874 FT /gene="rrn23S" FT rRNA 6972..7074 FT /gene="rrn4.5S" FT rRNA 7263..7383 FT /gene="rrn5S" XX SQ Sequence 7395 BP; 2000 A; 1594 C; 2064 G; 1737 T; 0 other; BASE COUNT 373 a 349 c 479 g 291 t 1225 others ORIGIN 1 |~~~~~~~~~ ~UAUAAUGGA GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGGACG|G G--------- -------aag u(gg------ 121 ---------- --u------- )guuu----- ---------- ------CC-- GGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCCU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGAACA ACAG------ ---------- --------CC G(GAAA)CGG 361 -CUGCUAAUA CC-UCGU-AA ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---UAAA--- ---------- ---------- 481 GGA------- ------(--- -------GGA A------)-- -------|-- --UCCGCCCG 541 AGGA-GGG|G -CUUGCGU|- CUGAUUA-GC UAGUUGG-UG -GG(G-CAAU AG)-CUUACC 601 AA|GGCGAUG AU|CAGUAGC UG|GUCC(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-G-C U-GACGGA|G CAAUGCCGCG UGGAGGUAGA AGGCC(---C 781 ACG--)GG-U C--GUGAACU UC|UUUU-AC CGAAGAAGAA GC-------- (--------) 841 --------AA UGACG|GU-A UCU-GGGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUUUUAUG-| UCC-GCCGUC AAAUACCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CCGG-AC-AG GCGGU--GGA -AAC-U|AUC -UA-G-CUGG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGUUUAG AGA---UCGG 1201 GAAGAACACC AAC---GGC( GAAA)GC|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |UAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|GG CG-CUGUGCG ---------- --------(- 1441 ------uauc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUAUGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAAAG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-GCG--A A------UCC UCUU-----( 1741 GAA-A-)GAG AG-GGG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CCC GUAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCCc-u--- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( cguuuaauuu )-------gu 2101 |GGAACCCUG AACAGACUGC CGGC(GAGAA ----)----- ---------- ---------G 2161 CCAGAGGAAG GUGAGGAUGA CGUC-AA--G UCAUCAUGCC CCUUAUGCCC UGGGCGAC-A 2221 CACGUGCUAC AACGGC--CG GGACAAAGGG UC----GCGA UCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGU-G AGCUAACC-C CAA-AAACCC 2341 GUCCUCAGUU CGGAUUGCAG AC(--UGCAA CUC)GUCUGC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU UA--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAU GGAAGCUGG- CCAUGCCCGA 2521 AGUCGUU--- AUCUU-AACC -(-----aaa a------)-G G-AGG-GGG- AU-GCCG-AA 2581 GG-CAGGGCU AGUGACUGGA GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCAG 2641 CUGGAUCACC UCCUUU--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.O.mino 2717 bp RNA RNA 13-AUG-1998 DEFINITION Chloroplast Orobanche minor.. ACCESSION No information KEYWORDS No information. SOURCE Chloroplast Orobanche minor. ORGANISM Chloroplast Orobanche minor. REFERENCE 1 (bases 1 to 140387) AUTHORS Lohan,A.J. and Wolfe,K.H. TITLE plants A subset of conserved tRNA genes in plastid DNA of nongreen JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: AJ007728 LOCUS OMI007728 2604 bp DNA PLN 13-AUG-1998 DEFINITION Orobanche minor chloroplast trnV gene, 16S rRNA gene, trnI pseudogene, trnA pseudogene and partial 23S rRNA gene. ACCESSION AJ007728 Z46509 NID g3425855 KEYWORDS 16S rRNA gene; 16S transfer RNA; 23S ribosomal RNA; 23S rRNA gene; transfer RNA-Val; trnA pseudogene; trnI pseudogene; trnV gene. SOURCE Orobanche minor. ORGANISM Chloroplast Orobanche minor Eukaryota; Viridiplantae; Charophyta/Embryophyta group; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Asteridae; Gentiananae; Lamiales; Orobanchaceae; Orobanche. REFERENCE 1 (bases 1 to 2604) AUTHORS Lohan,A.J. and Wolfe,K.H. TITLE A subset of conserved tRNA genes in plastid DNA of nongreen plants JOURNAL Unpublished REFERENCE 2 (bases 1 to 2604) AUTHORS Lohan,A.J. TITLE Direct Submission JOURNAL Submitted (07-AUG-1998) Lohan A.J., Smurfit Institute of Genetics, Trinity College Dublin, University of Dublin, Trinity College, Dublin 2, IRELAND BASE COUNT 370 a 359 c 481 g 287 t 1220 others ORIGIN 1 |caacuauga aUCUCAUGGA GAG-UU(C-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGA 61 CAUGCUU--A ACACAUGCAA GUCGGACG|G G--------- -------aag u(gg------ 121 ---------- --u------- )guuu----- ---------- ------CC-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGAACA ACAA------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CC-CCGU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAA--- ---------- ---------- 481 GGA------- ------(--- -------GGA A------)-- -------|-- --UCCGCCUG 541 AGGA-GGG|G -CUUGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-CAAU AG)-CUUACC 601 AA|GGCGAUG AU|CAGUAGC UG|GUCC(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GC- U-GACGGA|G CAAUGCCGCG UGGAGGUAGA AGGCC(---C 781 ACG--)GG-U C--GUGAACU UC|UUUU-CC CGGAGAAGAA GC-------- (--------) 841 --------AA UGACG|GU-A UCU-GGGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUUUUAAG-| UCC-GCCGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-AG GCGGU--GGA -AAC-U|ACC -AA-G-CUGG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUUA AA)UGCGUUG AGA---UCGG 1201 AAAGAACACC AAC---GGC( GAAA)GC|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |AAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GG GAC)-CCCGA UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|GG CG-CUGUGCG ---------- --------(- 1441 ------uauc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 UGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAGAG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-GCG--A A------UCC UCUU-----( 1741 GAA-A-)GAG AG-GGG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUCA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCCa----- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --uc---guu )--------u 2101 |GGAACCCUG AACAGACUGC UGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAUCAUGCC CCUUAUGCCC UGGGCGACCC 2221 UACGUGCUAC AAUGGC--CG GGACAAAGGG UC----GCGA UCCC------ ---------- 2281 ----(----G CGA-)a---- ---------- ----GGGU-G AGCUAACC-C CAA-AAACCC 2341 GUCCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGCAGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAU GGGAGCUGG- UCAUGCCCCA 2521 AGUCGUU--- A-CCUUAACC -(-----gca a------)-G G-AGG-GGG- AU-GCCG-AA 2581 GG-CAGGGCU AGUGACUGGA GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUUU--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.C.refl 2717 bp RNA RNA 11-JAN-191 DEFINITION Cuscuta reflexa. ACCESSION No information KEYWORDS No information. SOURCE Cuscuta reflexa. ORGANISM Cuscuta reflexa. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X72584 LOCUS CHCRTRNAV 8807 bp DNA PLN 30-MAR-1993 DEFINITION C.reflexa chloroplast genes trnA, trnI, trnV, rps7, rpS12, ndhB and 16S rDNA ACCESSION X72584 KEYWORDS 16S ribosomal RNA; NADPH dehydrogenase; ndhB gene; pseudogene; ribosomal protein; ribosomal protein S12; ribosomal protein S7; ribosomal RNA; rps12 gene; rps7 gene; transfer RNA-Ala; transfer RNA-Ile; transfer RNA-Val; trnA gene; trnI gene; trnV gene. SOURCE Cuscuta reflexa ORGANISM Chloroplast Cuscuta reflexa Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Asteridae; Polemoniales; Convolvulaceae. REFERENCE 1 (bases 1 to 8807) AUTHORS Haberhausen,G. JOURNAL Unpublished STANDARD full automatic REFERENCE 2 (bases 1 to 8807) AUTHORS Haberhausen,G. TITLE Direct Submission JOURNAL Submitted (04-MAR-1993) G. Haberhausen, Inst. f. Pflanzenphysiologie, Heinrich-Buff-Ring 58, W-6300 Giessen, FRG STANDARD full automatic FEATURES Location/Qualifiers source 1..8807 /organism="Cuscuta reflexa" /chloroplast mRNA join(6747..7511,7854..8581) /gene="pseudo ndhB" tRNA complement(join(29..63,844..881)) /gene="trnA" /product="transfer RNA-Ala" tRNA complement(join(946..980,1920..1956)) /gene="trnI" /product="transfer RNA-Ile" rRNA complement(2260..3748) /product="16S ribosomal RNA" tRNA complement(3969..4040) /gene="trnV" /product="transfer RNA-Val" exon complement(5198..5430) /product="ribosomal protein S12" /gene="rps12" /note="rps12 3' exon" exon 6747..7511 /number=1 intron 7512..7853 /number=1 exon 7854..8581 /number=2 CDS 6040..6507 /gene="rps7" /product="ribosomal protein S7" /codon_start=1 /translation="MSRRGTAEKKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIY RAVKKIQQKTETNPLSVLRQAIRGVTPDITVKARRVGGSTHQVPVEIGSTQGKALAVR WLLAASRKRPGRDMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR" BASE COUNT 2428 a 2105 c 1874 g 2400 t ORIGIN BASE COUNT 365 a 358 c 482 g 284 t 1228 others ORIGIN 1 |~~~~~~~~~ ~UCUCAUGGA GAG-UU(C-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGUACG|G G--------- -------aag u(gg------ 121 ---------- --u------- )guuu----- ---------- ------CC-- AGU--GGCGG 181 ACGGGUGAGU AG-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGAACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CC-CCGU-A- ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAA--- ---------- ---------- 481 GGA------- ------(--- -------GGA A------)-- -------|-- --UCCGCCCG 541 AGGA-GGG|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-CAAU AG)-CUUACC 601 AA|GGCAAUG AU|CAGUAGC UG|GUCC(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-G-C U-GACGGA|G CAAUGCCGCG UGGAGGUAGA AGGCC(---C 781 ACG--)GG-U C--GUGAACU UC|UUUU-CC CGGAGAAGAA GC-------- (--------) 841 --------AA UGACG|GU-A UCU-GGGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUUUUAAG-| UCC-GCCGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-AG GCGGU--GGA -AAC-U|ACC -AA-G-CUGG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 AAAGAACACC AAC---GGC( GAAA)GC|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |GAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|GG CG-CUGUGCG ---------- --------(- 1441 ------uauc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAC)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAAAG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-GCG--A A------UCC UCUU-----( 1741 GAA-A-)GAG AG-GGG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGUG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCCa----- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( ucguugaguu )--------u 2101 |GGAACCCUG AACAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAUCAUGCC CCUUAUGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG GGACAAAGGG UC----GCGA UCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGU-G AGCUAACC-C CAA-AAACCC 2341 GUCCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAU GGGAGCUGG- CCAUGCCCGA 2521 AGUCGUU--- ACCUU-AACC -(-----gca a------)-G G-AGG-GGG- AU-GCCG-AA 2581 GG-UAGGGCU AGUGACUGGA GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUUU--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.N.pl.1 2717 bp RNA RNA 11-JAN-191 DEFINITION Nicotiana plumbaginifolia. ACCESSION No information KEYWORDS No information. SOURCE Nicotiana plumbaginifolia. ORGANISM Nicotiana plumbaginifolia. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: M82900 LOCUS TOB16SRRD 1490 bp ds-DNA ORG 14-JUL-1992 DEFINITION Nicotiana plumbaginifolia 16S rRNA gene. ACCESSION M82900 KEYWORDS 16S ribosomal RNA. SOURCE Chloroplast Nicotiana plumbaginifolia (chromosome Chloroplast Nicotiana plumbaginifolia) mature leaf DNA. ORGANISM Chloroplast Nicotiana plumbaginifolia Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Asteridae; Solanales; Solanaceae. REFERENCE 1 (bases 1 to 1490) AUTHORS Yeh,K.-C., To,K.-Y., Wu,M. and Chen,C.-C. TITLE Nucleotide sequence analysis of Chloroplast 16S rRNA gene in wild type and Streptomycin-resistant Nicotiana plumbaginifolia JOURNAL Unpublished (1991) STANDARD simple staff_entry FEATURES Location/Qualifiers rRNA 1..1490 /product="16S ribosomal RNA" /gene="16S rRNA" BASE COUNT 366 a 360 c 483 g 281 t ORIGIN BASE COUNT 366 a 360 c 483 g 281 t 1227 others ORIGIN 1 |~~~~~~~~~ ~UCUCAUGGA GAG-UU(C-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGGACG|G G--------- -------aag u(gg------ 121 ---------- --u------- )guuu----- ---------- ------CC-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGAACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CC-CCGU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAA--- ---------- ---------- 481 GGA------- ------(--- -------GGA A------)-- -------|-- --UCCGCCCG 541 AGGA-GGG|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-CAAU AG)-CUUACC 601 AA|GGCGAUG AU|CAGUAGC UG|GUCC(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGCCGCG UGGAGGUAGA AGGCC(---C 781 ACG--)GG-U C--GUGAACU UC|UUUU-CC CGGAGAAGAA GC-------- (--------) 841 --------AA UGACG|GU-A UCU-GGGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUUUUAAG-| UCC-GCCGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-AG GCGGU--GGA -AAC-U|ACC -AA-G-CUGG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 AAAGAACACC AAC---GGC( GAAA)GC|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |GAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|GG CG-CUGUGCG ---------- --------(- 1441 ------uauc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAAAG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-GCG--A A------UCC UCUU-----( 1741 GAA-A-)GAG AG-GGG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCCa----- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( ucguugaguu )--------u 2101 |GGAACCCUG AACAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAUCAUGCC CCUUAUGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG GGACAAAGGG UC----GCGA UCCC------ ---------- 2281 ----(----G CGA-)----- ---------- -----GGU-G AGCUAACC-C CAA-AAACCC 2341 GUCCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAU GGGAGCUGG- CCAUGCCCGA 2521 AGUCGUU--- ACCUU-AACC -(-----gca a------)-G G-AGG-GGG- AU-GCCG-AA 2581 GG-CAGGGCU AGUGACUGGA GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUUU--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.N.pl.2 2717 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X70938 remFT /anticodon=(pos:972..974,aa:Val) remFT rRNA 1226..2714 remFT /product="16S ribosomal RNA" remFT /gene="16SrDNA" remFT tRNA 3015..3051 remFT /product="transfer RNA-Ile-gau" remFT /gene="trnI" remFT /note="5'exon" remXX remSQ Sequence 3274 BP; 825 A; 713 C; 949 G; 787 T; 0 other; ID CHNPTRNVI standard; DNA; ORG; 3274 BP. XX AC X70938; XX DT 06-MAR-1993 (Rel. 35, Created) DT 06-MAR-1993 (Rel. 35, Last updated, Version 2) XX DE N.plumbaginifolia chloroplast 16SrDNA, trnV and trnI genes for 16S DE ribosomal RNA, transfer RNA-Val and transfer RNA-Ile (5'exon) XX KW 16S ribosomal RNA; inverted repeat; ribosomal RNA; transfer RNA; KW transfer RNA-Ile-gau; transfer RNA-Val-gac; trnI gene; trnV gene. XX OS Nicotiana plumbaginifolia (tobacco) OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; OC Asteridae; Solanales; Solanaceae. XX OG Chloroplast XX RN [1] RP 2059-2418 RA O'Neil C., Horvath V.G., Hovarth E., Dix P.H.J., Medgyesy P.; RT "Chloroplast transformation in plants: polyethylene glycol (PEG) RT treatment of protoplasts in an alternative to biolistic delivery RT systems"; RL Plant J. 0:0-0(0). XX RN [2] RP 1-3274 RA Horvath G.V.; RT ; RL Submitted (16-FEB-1993) on tape to the EMBL Data Library by: RL G.V. Horvath, Biolgoical Research Centre, Institute of Plant Phys., RL Hungarian Academy of Science, PO BOx 521, 6701 Szeged, HUNGARY XX CC *source: strain=wild type; CC *source: haplotype=diploid; CC *source: stage=mature plant; CC *source: tissue=leaf; XX FH Key Location/Qualifiers FH FT tRNA 927..998 FT /product="transfer RNA-Val-gac" FT /gene="trnV" BASE COUNT 366 a 359 c 482 g 281 t 1229 others ORIGIN 1 |~~~~~~~~~ ~UCUCAUGGA GAG-UU(C-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGGACG|G G--------- -------aag u(gg------ 121 ---------- --u------- )guuu----- ---------- ------CC-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGAACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CC-CCGU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAA--- ---------- ---------- 481 GGA------- ------(--- -------GGA A------)-- -------|-- --UCCGCCCG 541 AGGA-GGG|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-CAAU AG)-CUUACC 601 AA|GGCGAUG AU|CAGUAGC UG|GUCC(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-G-C U-GACGGA|G CAAUGCCGCG UGGAGGUAGA AGGCC(---C 781 ACG--)GG-U C--GUGAACU UC|UUUU-CC CGGAGAAGAA GC-------- (--------) 841 --------AA UGACG|GU-A UCU-GGGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUUUUAAG-| UCC-GCCGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-AG GCGGU--GGA -AAC-U|ACC -AA-G-CUGG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 AAAGAACACC AAC---GGC( GAAA)GC|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |GAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|GG CG-CUGUGCG ---------- --------(- 1441 ------uauc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCG-U|GGA GCAUGUGGUU UAAUUCG-(A UGCAAAG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-GCG--A A------UCC UCUU-----( 1741 GAA-A-)GAG AG-GGG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCCa----- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( ucguugaguu )--------u 2101 |GGAACCCUG AACAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAUCAUGCC CCUUAUGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG GGACAAAGGG UC----GCGA UCCC------ ---------- 2281 ----(----G CGA-)----- ---------- -----GGU-G AGCUAACC-C CAA-AAACCC 2341 GUCCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAU GGGAGCUGG- CCAUGCCCGA 2521 AGUCGUU--- ACCUU-AACC -(-----gca a------)-G G-AGG-GGG- AU-GCCG-AA 2581 GG-CAGGGCU AGUGACUGGA GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUUU--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.N.ta.1 2717 bp RNA RNA 19-JAN-1981 DEFINITION chloroplast,Nicotiana tabacum(tabacco). ACCESSION No information KEYWORDS No information. SOURCE chloroplast,Nicotiana tabacum(tabacco). ORGANISM chloroplast,Nicotiana tabacum(tabacco). REFERENCE 1 (bases 1 to 140387) AUTHORS No information JOURNAL Sugiura FINISH STANDARD No information COMMENTS Organism information Culture collection: ???? Sequence information (bases 1 to 2717) Corresponding GenBank entry: V00165 Phylo:Eubacteria,Cyanobacteria,chloroplast LOCUS CHNTRN1 2113 bp DNA PLN 31-MAR-1992 DEFINITION Tobacco chloroplast genes for 16S ribosomal RNA and tRNA-Val. ACCESSION V00165 J01453 KEYWORDS 16S ribosomal RNA; ribosomal RNA; transfer RNA; transfer RNA-Val. SOURCE tobacco ORGANISM Chloroplast Nicotiana tabacum Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Asteridae; Solanales; Solanaceae. REFERENCE 1 (bases 628 to 2113) AUTHORS Tohdoh,N. and Sugiura,M. TITLE The complete nucleotide sequence of a 16S ribosomal RNA gene from tobacco chloroplasts JOURNAL Gene 17, 213-218 (1982) STANDARD full automatic REFERENCE 2 (bases 1 to 766) AUTHORS Tohdoh,N., Shinozaki,K. and Sugiura,M. TITLE Sequence of a putative promoter region for the rRNA genes of tobacco chloroplast DNA JOURNAL Nucleic Acids Res. 9, 5399-5406 (1981) STANDARD full automatic COMMENT NCBI gi: 11799 FEATURES Location/Qualifiers source 1..2113 /organism="Nicotiana tabacum" /chloroplast tRNA 328..399 /note="tRNA-Val" rRNA 628..2113 /note="16S rRNA" BASE COUNT 530 a 473 c 649 g 461 t ORIGIN BASE COUNT 363 a 358 c 483 g 282 t 1231 others ORIGIN 1 |~~~~~~~~~ ~UCUCAUGGA GAG-UU(C-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGGACG|G G--------- -------aag u(gg------ 121 ---------- --u------- )guuu----- ---------- ------CC-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGAACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CC-CCGU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAA--- ---------- ---------- 481 GGA------- ------(--- -------GGA A------)-- -------|-- --UCCGCCCG 541 AGGA-GGG|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-CAAU AG)-CUUACC 601 AA|GGCGAUG AU|CAGUAGC UG|GUCC(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GC- --GACGGA|G CAAUGCCGCG UGGAGGUAGA AGGCC(---C 781 ACG--)GG-U C--GUGAACU UC|UUUU-CC CGGAGAAGAA GC-------- (--------) 841 --------AA UGACG|GU-A UCU-GGGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUUUUAAG-| UCC-GCCGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-AG GCGGU--GGA -AAC-U|ACC -AA-G-CUGG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 AAAGAACACC AAC---GGC( GAAA)GC|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |GAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|GG CG-CUGUGCG ---------- --------(- 1441 -------auc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCGC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAAAG)CG 1681 AAGAACCUUA CCAUGGCUUG ACA----UG| -CC-GCG--A A------UCC UCUU-----( 1741 GAA-A-)GAG AG-GGG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCCa----- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( ucguugaguu )--------u 2101 |GGAACCCUG AACAGACUGC CGGU(GUUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAUCAUGCC CCUUAUGCCC UUGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG GGACAAAGGG UC----GCGA UCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGU-G AGCUAACC-C CAA-AAACCC 2341 GUCCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAU GGGAGCUGG- CCAUGCCCGA 2521 AGUCGUU--- ACCUU-AACC -(-----gca a------)-G G--GG-GGG- AU-GCCG-AA 2581 -G-CGGGGCU AGUGACUGGA GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUUU--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.N.ta.2 2717 bp RNA RNA 03-SEP-1997 DEFINITION Chloroplast Nicotiana tabacum.; 16S ribosomal RNA; 23S ribosomal RNA; 4.5S ribosomal RNA; 5S ribosomal RNA; ATP synthetase; ATPase; autonomous replication; carboxylase; chloroplast; circular; complete genome; cytochrome b-559; cytochrome b6; cytochrome f; initiation factor; inverted repeat; NADH dehydrogenase; phosphoprotein; ribosomal protein L14; ribosomal protein L16; ribosomal protein L2; ribosomal protein L20; ribosomal protein L22; ribosomal protein L23; ribosomal protein L33; ribosomal protein S11; ribosomal protein S12; ribosomal protein S15; ribosomal protein S18; ribosomal protein S19; ribosomal protein S2; ribosomal protein S3; ribosomal protein S7; ribosomal protein S8; ribosomal RNA; ribulose bisphosphate carboxylase; RNA polymerase; transfer RNA; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val; unidentified reading frame. ACCESSION Z00044 S54304 KEYWORDS 16S ribosomal RNA; 23S ribosomal RNA; 4.5S ribosomal RNA; 5S ribosomal RNA; ATP synthetase; ATPase; autonomous replication; carboxylase; chloroplast; circular; complete genome; cytochrome b-559; cytochrome b6; cytochrome f; initiation factor; inverted repeat; NADH dehydrogenase; phosphoprotein; ribosomal protein L14; ribosomal protein L16; ribosomal protein L2; ribosomal protein L20; ribosomal protein L22; ribosomal protein L23; ribosomal protein L33; ribosomal protein S11; ribosomal protein S12; ribosomal protein S15; ribosomal protein S18; ribosomal protein S19; ribosomal protein S2; ribosomal protein S3; ribosomal protein S7; ribosomal protein S8; ribosomal RNA; ribulose bisphosphate carboxylase; RNA polymerase; transfer RNA; transfer RNA-Ala; transfer RNA-Arg; transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys; transfer RNA-Glu; transfer RNA-Gly; transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu; transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe; transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr; transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val; unidentified reading frame. SOURCE Chloroplast Nicotiana tabacum. ORGANISM Chloroplast Nicotiana tabacum. REFERENCE 1 (bases 1 to 155844) AUTHORS Kato,A., Tohdoh,N., Shimada,H. and Sugiura,M. Shinozaki,K., Ohme,M., Tanaka,M., Wakasugi,T., Hayashida,N., Matsubayashi,T., Zaita,N., Chunwongse,J., Obokata,J., Yamaguchi-Shinozaki,K., Ohto,C., Torazawa,K., Meng,B.Y., Sugita ,M., Deno,H., Kamogashira,T., Yamada,K., Kusuda,J., Takaiwa,F., TITLE The complete nucleotide sequence of tobacco chloroplast genome: its gene organization and expression JOURNAL EMBO J. 5, 2043-2049 (1986) STANDARD No information REFERENCE 2 (bases 1 to 155844) AUTHORS Sugiura,M. TITLE Direct Submission JOURNAL Submitted (12-AUG-1986) to the EMBL/GenBank/DDBJ databases STANDARD No information REFERENCE 3 (bases 1 to 155844) AUTHORS Shimada,H. and Sugiura,M. TITLE Fine structural features of the chloroplast genome: comparison of the sequenced chloroplast genomes JOURNAL Nucleic Acids Res. 19 (5), 983-995 (1991) STANDARD No information REFERENCE 4 (bases 1 to 155844) AUTHORS Mitchelson,K. and Stephen,J. TITLE Processing of histidine transfer RNA precursors in tobacco chloroplasts JOURNAL Nucleic Acids Res. 19 (11), 3150 (1991) STANDARD No information REFERENCE 5 (bases 31640 to 32290; 90230 to 91610) AUTHORS Ayliffe,M.A. and Timmis,J.N. TITLE Plastid DNA sequence homologies in the tobacco nuclear genome JOURNAL Mol. Gen. Genet. 236 (1), 105-112 (1992) STANDARD No information REFERENCE 6 (bases 1 to 155844) AUTHORS Morton,B.R. and Clegg,M.T. TITLE A chloroplast DNA mutational hotspot and gene conversion in a noncoding region near rbcL in the grass family (Poaceae) JOURNAL Curr. Genet. 24 (4), 357-365 (1993) STANDARD No information REFERENCE 7 (bases 1 to 155844) AUTHORS Kunnimalaiyaan,M. and Nielsen,B.L. TITLE Fine mapping of replication origins (oriA and oriB) in Nicotiana tabacum chloroplast DNA JOURNAL Nucleic Acids Res. 25, 3681-3686 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: Z00044 The circular tobacco chloroplast DNA sequence is presented in a linearized form by cutting at the junction (JLA) between IRA and LSC. JLA is designated zero and numbered proceeding towards LSC. The DNA strand which codes for the large subunit of ribulose 1,5-bisphosphate carboxylase is designated as A strand and the complementary strand as B strand. Nucleotide sequence of the B strand is presented. Large single copy region (LSC): 1 - 86684 (86684 bp) Inverted repeat B (IRB) : 86685 - 112023 (25339 bp) Small single copy region (SSC): 112024 - 130505 (18482 bp) Inverted repeat A (IRA) : 130506 - 155844 (25339 bp) An alphabetical index of tobacco chloroplast genes and ORFs GENE NUCLEOTIDE NUMBER (FROM) ars1 112768 ars2 14570 atpA 10625 atpB 55273 atpE 54875 atpF 12203 atpH 13854 atpI 15258 infA 82175 ndhA 121597 ndhB 97047, 143640 ndhC 52297 ndhD 117429 ndhE 119555 ndhF 112066 ORF39 66741 ORF62 37586 ORF70A 48933 ORF70B 102099, 140218 ORF73 72465 ORF74A 46240 ORF74B 73323 ORF75 110593, 131709 ORF77 44264 ORF79 96553, 145737 ORF80 20181 ORF82 45146 ORF87 95815, 146451 ORF90 20374 ORF92 96116, 146135 ORF98 7724 ORF99A 66168 ORF99B 120084 ORF103 67269 ORF105 37241 ORF115 96057, 146125 ORF120 52297 ORF131 101948, 140186 ORF134 19873 ORF138 120196 ORF154 31280 ORF158 50981 ORF167 121009 ORF184 62630 ORF228 125796 ORF229 63407 ORF284 51563 ORF313 116250 ORF350 111025 ORF393 123842 ORF509A 2129 ORF512 59785 ORF581 88883, 151901 ORF1244 127767 ORF1708 90598, 146805 petA 64327 petB 77449 petD 79845 psaA 41226 psaB 38996 psbA 534 psbB 74950 psbC 35471 psbD 34462 psbE 66870 psbF 77098 rbcL 57587 4.5SrDNA 109236, 133191 5SrDNA 109595, 132814 16SrDNA 102758, 138283 23SrDNA 106325, 133395 rpl2 86741, 154298 rpl14 83173 rpl16 83669 rpl20 71015 rpl22 85881 rpl23 88250, 153998 rpl33 70123 rpoA 80452 rpoB 24289 rpoC 17165 rps2 16228 rps3 85240 rps4 47528 rps7 99537, 142525 rps8 82600 rps11 81531 5'-rps12 72213 3'-rps12 100058, 141678 rps14 38571 rps15 125135 rps16 5094 rps18 70510 rps19 86402 secX 82049 ssb 126740 trnA-UGC 105390, 136358 trnC-GCA 28783 trnD-GUC 31926 trnE-UUC 32251 trnF-GAA 50232 trnG-GCC 38050 trnG-UCC 9499 trnH-GUG 6 trnI-CAU 88697, 153759 trnI-GAU 104547, 137204 trnK-UUU 1810 trnL-CAA 96427, 146022 trnL-UAA 49288 trnL-UAG 116067 trnM-CAU 54581 trnfM-CAU 38348 trnN-GUU 110628, 131830 trnP-UGG 69045 trnQ-UUG 7416 trnR-ACG 109973, 132483 trnR-UCU 10430 trnS-GCU 8632 trnS-GGA 47111 trnS-UGA 37132 trnT-GGU 33172 trnT-UGU 48505 trnV-GAC 102459, 139999 trnV-UAC 53747 trnW-CCA 68807 trnY-GUA 32108. BASE COUNT 366 a 359 c 483 g 281 t 1228 others ORIGIN 1 |--------- -UCUCAUGGA GAG-UU(C-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGGACG|G G--------- -------aag u(gg------ 121 ---------- --u------- )guuu----- ---------- ------CC-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGAACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CC-CCGU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAA--- ---------- ---------- 481 GGA------- ------(--- -------GGA A------)-- -------|-- --UCCGCCCG 541 AGGA-GGG|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-CAAU AG)-CUUACC 601 AA|GGCGAUG AU|CAGUAGC UG|GUCC(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCU --GACGGA|G CAAUGCCGCG UGGAGGUAGA AGGCC(---C 781 ACG--)GG-U C--GUGAACU UC|UUUU-CC CGGAGAAGAA GC-------- (--------) 841 --------AA UGACG|GU-A UCU-GGGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUUUUAAG-| UCC-GCCGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-AG GCGGU--GGA -AAC-U|ACC -AA-G-CUGG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 AAAGAACACC AAC---GGC( GAAA)GC|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |GAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|GG CG-CUGUGCG ---------- --------(- 1441 ------uauc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAAAG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-GCG--A A------UCC UCUU-----( 1741 GAA-A-)GAG AG-GGG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCCa----- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( ucguugaguu )--------u 2101 |GGAACCCUG AACAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAUCAUGCC CCUUAUGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG GGACAAAGGG UC----GCGA UCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GG-u-G AGCUAACC-C CAA-AAACCC 2341 GUCCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAU GGGAGCUGG- CCAUGCCCGA 2521 AGUCGUU--- ACCUU-AACC -(-----gca a------)-G G-AGG-GGG- AU-GCCG-AA 2581 GG-CAGGGCU AGUGACUGGA GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUUU--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.G.max 2717 bp RNA RNA 11-JAN-191 DEFINITION Chloroplast Glycine max. ACCESSION No information KEYWORDS No information. SOURCE Chloroplast Glycine max. ORGANISM Chloroplast Glycine max. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X60428 X07675 LOCUS SOYCPV16S 2000 bp ds-DNA ORG 15-DEC-1988 DEFINITION Soybean chloroplast DNA for tRNA-Val and 16S rRNA. ACCESSION X06428 KEYWORDS 16S ribosomal RNA; ribosomal RNA; transfer RNA; transfer RNA-Val. SOURCE soybean (Chloroplast Glycine max). ORGANISM Chloroplast Glycine max Eukaryota; Planta; Spermatophyta; Magnoliopsida; Rosidae; Fabales; Fabaceae. REFERENCE 1 (bases 1 to 2000; enum. 1 to 2000) AUTHORS Stutz,E. JOURNAL Unpublished (1987) Univ de Neuchatel,CH-2000 Neuchatel,Switzerland STANDARD simple automatic REFERENCE 2 (bases 1 to 2000; enum. 1 to 2000) AUTHORS von Allmen,J.-M. and Stutz,E. TITLE The soybean chloroplast genome: Nucleotide seque4nce of a region containing tRNA-Val (GAC) and 16S rRNA gene JOURNAL Nucl Acid Res 16, 1200-1200 (1988) STANDARD simple automatic COMMENT EMBL features not translated to GenBank features: key from to description PRM 78 83 put. -35 region (P1) PRM 102 107 put. -10 region (P1) PRM 172 177 put. alt. -35 region (P2) PRM 195 200 put. alt. -10 region (P2) ANTICDN 261 263 anticodon GAC PRM 374 379 put. -35 region (P3) PRM 395 400 put. -10 region (P3) FEATURES from to/span description tRNA 229 300 tRNA-Val rRNA 522 1991 16S rRNA BASE COUNT 523 a 436 c 604 g 437 t ORIGIN BASE COUNT 368 a 348 c 471 g 283 t 1247 others ORIGIN 1 |~~~~~~~~~ ~UCUCAUGGA GAG-UU(C-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCCU--U ACACAUGCAA GUCGGACG|G G--------- -------aag u(gg------ 121 ---------- --u------- )Guuu----- ---------- ------CC-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUAC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGAACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CC-CCGU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAA--- ---------- ---------- 481 GGA------- ------(--- -------G-A A------)-- -------|-- --UCCGCCCG 541 AGGA-GGG|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-CA-U AG)-CUUACC 601 AA|GGCGAUG AU|CAGUAGC UG|GUCC(GA GA)G-AUGAU CAGC|CACAC UGGGA(CUGA 661 GACGAG)GCC CAGA-C--UC U(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-G-GC-( -GAAA)-GC- U-GACGGA|G CAAUGCCGCG UGAAGGUAGA AGGCC(---U 781 AC---)GG-U C--AUGAACU UC|UUUU-CC CGGAGAAGAA GC-------- (--------) 841 --------AA UGACG|GUGA UCC-GGGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCGGCC|GC GGU---AA-) GACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 -AAAG-GUCU GUAGGUG|GC UUUUUAAG-| UUC-GCCGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-AG GCGGU--GGA -AAC-U|ACC -AA-G-CUGG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 AAAGAACACC AAC---GGC( GAAA)GC|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |GAG-AGACG AAACUUAGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|GG CG-CUGUGCG ---------- --------(- 1441 ------uauc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAA UGCU-GUA-C (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCC--GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAAAG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-GCG--A A------UCC UCUU-----( 1741 GAA-A-)GAG AG-GGG---U G--CU----- ----(U-CG- -----)---- -----GGAA- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCCa----- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( acauuuaguu )--------u 2101 |GGAACCCUG AGCAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUCGAA--G UCAUCAUGCC CCUUAUGCCC UGGGCGAC-A 2221 CACGUGCUAC AAU------- GGACAAAGGA UC----GCGA UCCC------ ---------- 2281 ----(----G CGA-)----- ---------- -----GGU-G AGCUAACU-C CAA-AAACCC 2341 GUCCUCAGUU CGGAUUGUAG GC(--UGCAA CUC)GCCUGC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAU GGGAGCUGG- CCAUGCC-GA 2521 AGUCGUU--- ACCUU-AACC -(-----gca a------)-- G-AGG-GGG- AU-GCC---- 2581 GA-AGGGGCU AGUGACUGGA GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUU~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.P.sa.1 2717 bp RNA RNA 11-JAN-191 DEFINITION Pisum sativum. ACCESSION No information KEYWORDS No information. SOURCE Pisum sativum. ORGANISM Pisum sativum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X55033 LOCUS PEACPPSRRN 7920 bp ds-DNA ORG 28-JUL-1992 DEFINITION P.sativum chloroplast DNA of the single ribosomal RNA operon ACCESSION X55033 KEYWORDS . SOURCE Chloroplast Pisum sativum DNA. ORGANISM Chloroplast Pisum sativum Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Rosidae; Fabales; Fabaceae. REFERENCE 1 (bases 1 to 7920) AUTHORS Stummann,B.M., Lehmbeck,J., Bookjans,G. and Henningsen,K.W. TITLE Nucleotide sequence of the single ribosomal RNA operon of pea chloroplast DNA JOURNAL Physiol. Plantarum 72, 139-146 (1988) STANDARD full automatic COMMENT From EMBL entry CHPSRRNAO; dated 01-JUL-1992. FEATURES Location/Qualifiers tRNA join(2699..2734,3418..3453) /gene="trnI-GAU" tRNA join(3519..3555,4356..4391) /gene="trnA-UGC" -35_signal 58..63 -10_signal 86..91 -35_signal 349..354 -10_signal 372..377 tRNA 412..483 /gene="trnV-GAC" -35_signal 549..554 -10_signal 573..578 rRNA 717..2227 /product="16S ribosomal RNA" rRNA 4501..7312 /product="23S ribosomal RNA" rRNA 7391..7495 /product="4.5S ribosomal RNA" rRNA 7726..7846 /product="5S ribosomal RNA" BASE COUNT 2136 a 1745 c 2219 g 1820 t ORIGIN BASE COUNT 382 a 343 c 473 g 290 t 1229 others ORIGIN 1 |-------GA AGCUCAUGGA GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--U ACACAUGCAA GUCGGACG|G G--------- -------aag u(gg------ 121 ---------- --u------- )guuu----- ---------- ------CC-- AGU--GGCGA 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGGACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CC-CCGU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---GAAA--- ---------- ---------- 481 GGA------- ------(--- -------GGA A------)-- -------|-- --UCCGCCCA 541 AGGA-GGG|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-UAAU AG)-CUUACC 601 AA|GGCGAUG AU|CAGUAGC UG|GUCC(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACAAG)GUC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGCCGCG UGGAGGUAGA GGCCC(---C 781 U-G--)GG-U C--AUGAACU UC|UUUU-CC CGGAGAAGAA AA-------- (--------) 841 --------AA UGACG|GU-A UCC-GGGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUUUUAAG-| UUC-GCUGUC AAAUACCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-AG GUGGU--GAA -AAC-U|ACU -AA-G-CUAG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(AUGA AA)UGCGUAG AGA---UCGG 1201 AAGGAACACC AAC---GGC( GAAA)GA|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |GAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA GAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|AG UGGCUGUGCG ---------- -------a(- 1441 ------uauc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAA CGCU-GUA-C (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCC--GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAAAG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| --C-GCG--A A------UCC UCUU-----( 1741 GAA-A-)GAG AG-GAG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|UGCG -ACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUGA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCCa----- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( acguuuaguu )--------u 2101 |GGAACUCUG AACAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAUCAUGCC CCUUAUGCCC UGGGCUAC-A 2221 CAC-UGCUAC AAUGGA--CC GGACAAAGGA UC----GCGA CCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGU-G AGCUAACU-U CAA-AAACCU 2341 GUCCUCAGUU CGGAUUGUAG GC(--UGCAA CUC)GCCUAC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAU GGGAGCUGG- CCAUGCCCGA 2521 AGUCAUU--- ACCUU-AACC -(-----gca a------)-G G-AGG-GGG- AU-GCCG-AA 2581 GG-CAGGGCU AGUGACUGGA GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGA 2641 CUGGAUCACC UCCU~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.P.sa.2 2717 bp RNA RNA 11-JAN-191 DEFINITION Chloroplast Pisum sativum. ACCESSION No information KEYWORDS No information. SOURCE Chloroplast Pisum sativum. ORGANISM Chloroplast Pisum sativum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: M37430 LOCUS PEACPDKAA 7920 bp ss-mRNA ORG 19-SEP-1990 DEFINITION Pea Chloroplast 4.5S, 5S, 16S and 23S mRNA. ACCESSION M37430 KEYWORDS ribosomal protein. SOURCE Pea chloroplast, cDNA to mRNA. ORGANISM Chloroplast Pisum sativum Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Rosidae; Rosales; Fabaceaea; Pisum sativum. REFERENCE 1 (bases 1 to 7920) AUTHORS Stummann,B.M., Lehmbeck,J., Bookjans,G. and Henningsen,K.W. TITLE Nucleotide sequence of the single ribosomal RNA operon of pea chloroplast DNA JOURNAL Physiologia Plantarum 72, 139-146 (1988) STANDARD simple staff_entry BASE COUNT 2135 a 1746 c 2219 g 1820 t ORIGIN BASE COUNT 382 a 343 c 473 g 290 t 1229 others ORIGIN 1 |-------GA AGCUCAUGGA GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--U ACACAUGCAA GUCGGACG|G G--------- -------aag u(gg------ 121 ---------- --u------- )guuu----- ---------- ------CC-- AGU--GGCGA 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGGACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CC-CCGU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---GAAA--- ---------- ---------- 481 GGA------- ------(--- -------GGA A------)-- -------|-- --UCCGCCCA 541 AGGA-GGG|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-UAAU AG)-CUUACC 601 AA|GGCGAUG AU|CAGUAGC UG|GUCC(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACAAG)GUC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGCCGCG UGGAGGUAGA GGCCC(---C 781 U-G--)GG-U C--AUGAACU UC|UUUU-CC CGGAGAAGAA AA-------- (--------) 841 --------AA UGACG|GU-A UCC-GGGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUUUUAAG-| UUC-GCUGUC AAAUACCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-AG GUGGU--GAA -AAC-U|ACU -AA-G-CUAG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(AUGA AA)UGCGUAG AGA---UCGG 1201 AAGGAACACC AAC---GGC( GAAA)GA|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |GAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA GAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|AG UGGCUGUGCG ---------- -------a(- 1441 ------uauc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAA CGCU-GUA-C (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCC--GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAAAG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| --C-GCG--A A------UCC UCUU-----( 1741 GAA-A-)GAG AG-GAG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|UGCG -ACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUGA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCCa----- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( acguuuaguu )--------u 2101 |GGAACUCUG AACAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAUCAUGCC CCUUAUGCCC UGGGCUAC-A 2221 CAC-UGCUAC AAUGGA--CC GGACAAAGGA UC----GCGA CCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGU-G AGCUAACU-U CAA-AAACCU 2341 GUCCUCAGUU CGGAUUGUAG GC(--UGCAA CUC)GCCUAC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAU GGGAGCUGG- CCAUGCCCGA 2521 AGUCAUU--- ACCUU-AACC -(-----gca a------)-G G-AGG-GGG- AU-GCCG-AA 2581 GG-CAGGGCU AGUGACUGGA GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGA 2641 CUGGAUCACC UCCU~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.P.sa.3 2717 bp RNA RNA 11-JAN-191 DEFINITION Chloroplast Pisum sativum. ACCESSION No information KEYWORDS No information. SOURCE Chloroplast Pisum sativum. ORGANISM Chloroplast Pisum sativum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X51598 ID PS16SVAL standard; DNA; ORG; 2315 BP. XX AC X51598; XX DT 26-MAY-1992 (Rel. 32, Created) DT 26-MAY-1992 (Rel. 32, Last updated, Version 1) XX DE P.sativum 16S rRNA & tRNA-Val chloroplast genes XX KW 16S ribosomal DNA; 16S ribosomal RNA; chloroplast genome; KW transfer RNA-Val. XX OS Pisum sativum (pea) OC Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; OC Rosidae; Fabales; Fabaceae. XX OG Chloroplast XX RN [1] RP 1-2315 RA Jagendorf A.T.; RT ; RL Submitted (02-JAN-1989) on tape to the EMBL Data Library by: RL Jagendorf A.T., Cornell University, Section of Plant Biology, 228 RL Plant Science Building, Ithaca, NY 14853, USA. XX RN [2] RP 1-2315 RA Cerutti H., Jagendorf A.T.; RT "Nucleotide sequence of the chloroplast 16S rRNA gene from pea RT (Pisum sativum L.)"; RL Plant Mol. Biol. 17:125-126(1991). XX CC *source: strain=cr. Progress No.9; CC *source: stage=10 day old seedlings; CC *source: clone=pBX5; CC *source: chromosome=plastome; XX CC See also X55033, M37430 & M16862-6 XX FH Key Location/Qualifiers FH FT -35_signal 81..86 FT -10_signal 104..109 FT tRNA 144..215 FT /gene="tRNA-Val" FT -35_signal 281..286 FT -10_signal 305..310 FT rRNA 472..1961 FT /gene="16S rRNA" XX SQ Sequence 2315 BP; 625 A; 493 C; 668 G; 529 T; 0 other; BASE COUNT 380 a 345 c 475 g 290 t 1227 others ORIGIN 1 |-------GA AGCUCAUGGA GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--U ACACAUGCAA GUCGGACG|G G--------- -------aag u(gg------ 121 ---------- --u------- )guuu----- ---------- ------CC-- AGU--GGCGA 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGGACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CC-CCGU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---GAAA--- ---------- ---------- 481 GGA------- ------(--- -------GGA A------)-- -------|-- --UCCGCCCA 541 AGGA-GGG|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-UAAU AG)-CUUACC 601 AA|GGCGAUG AU|CAGUAGC UG|GUCC(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACAAG)GUC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGCCGCG UGGAGGUAGA GGCCC(---C 781 U-G--)GG-U C--AUGAACU UC|UUUU-CC CGGAGAAGAA AA-------- (--------) 841 --------AA UGACG|GU-A UCC-GGGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUUUUAAG-| UUC-GCUGUC AAAUACCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-AG GUGGU--GAA -AAC-U|ACU -AA-G-CUAG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(AUGA AA)UGCGUAG AGA---UCGG 1201 AAGGAACACC AAC---GGC( GAAA)GC|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |GAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA GAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|AG UGGCUGUGCG ---------- --------(- 1441 ------uauc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAA CGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAAAG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| --C-GCG--A A------UCC UCUU-----( 1741 GAA-A-)GAG AG-GAG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|UGCG -ACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUGA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCCa----- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( acguuuaguu )--------u 2101 |GGAACUCUG AACAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAUCAUGCC CCUUAUGCCC UGGGCUAC-A 2221 CACGUGCUAC AAUGGA--CC GGACAAAGGA UC----GCGA CCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGU-G AGCUAACU-U CAA-AAACCU 2341 GUCCUCAGUU CGGAUUGUAG GC(--UGCAA CUC)GCCUAC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAU GGGAGCUGG- CCAUGCCCGA 2521 AGUCAUU--- ACCUU-AACC -(-----gca a------)-G G-AGG-GGG- AU-GCCG-AA 2581 GG-CAGGGCU AGUGACUGGA GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGA 2641 CUGGAUCACC UCCU~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.A.glut 2717 bp RNA RNA 02-JAN-1999 DEFINITION Chloroplast Alnus glutinosa.. ACCESSION No information KEYWORDS No information. SOURCE Chloroplast Alnus glutinosa. ORGANISM Chloroplast Alnus glutinosa. REFERENCE 1 (bases 1 to 155844) AUTHORS Wolters,D.J., Zoetendal,E.G., Akkermans,A.D.L. and Van Dijk,C . TITLE A phylogenetic studies on uncultured ineffective Frankia strains from A.glutinosa L. (Gaertn.) in the Netherlands JOURNAL Unpublished STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U46209 LOCUS AGU46209 996 bp DNA PLN 02-JAN-1999 DEFINITION Alnus glutinosa 16S rRNA gene, chloroplast gene encoding chloroplast rRNA, partial sequence. ACCESSION U46209 NID g4097165 KEYWORDS . SOURCE Alnus glutinosa. ORGANISM Chloroplast Alnus glutinosa Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Rosidae; Fagales; Betulaceae; Alnus. REFERENCE 1 (bases 1 to 996) AUTHORS Wolters,D.J., Zoetendal,E.G., Akkermans,A.D.L. and Van Dijk,C. TITLE A phylogenetic studies on uncultured ineffective Frankia strains from A.glutinosa L. (Gaertn.) in the Netherlands JOURNAL Unpublished REFERENCE 2 (bases 1 to 996) AUTHORS Wolters,D.J. TITLE Direct Submission JOURNAL Submitted (18-JAN-1996) D.J. Wolters, NIOO-CTO, Boterhoeksestraat 22, PO Box 6666 GA, Heteren, Gld, The Netherlands FEATURES Location/Qualifiers source 1..996 /organism="Alnus glutinosa" /chloroplast /db_xref="taxon:3517" rRNA <1..>996 /product="16S rRNA" BASE COUNT 255 a 227 c 332 g 182 t BASE COUNT 255 a 227 c 332 g 182 t 1721 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~|~~~ ~~~~~~~~~~ ~~~-~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~GGACG|G G--------- -------aag u(gg------ 121 ---------- --u------- )guuu----- ---------- ------CC-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGAACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CC-CCGU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAA--- ---------- ---------- 481 GGA------- ------(--- -------GGA A------)-- -------|-- --UCCGCCUG 541 AGGA-GGG|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-CAAU AG)-CUUACC 601 AA|GGCGAUG AU|CAGUAGC UG|GUCC(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGCCGCG UGGAGGUAGA AGGCC(---U 781 ACG--)GG-U C--GUGAACU UC|UUUU-CC CGGAGAAGAA GC-------- (--------) 841 --------AA UGACG|GU-A UCU-GGGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUUCUAAG-| UCC-GCCGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-AG GCGGU--GGA -AAC-U|ACC -AA-G-CUGG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 AAAGAACACC AAC---GGC( GAAA)GC|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CGCUGACACU 1321 |GAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|GG CG-CUGUGCG ---------- --------(- 1441 ------uauc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UCCAAAG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----U-| -CC-GCG--A A------UCC UCUU-----( 1741 GAA-A-)GAG AG-GGG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( GUAA-U)CCC GCAACGAUCA CAACC~~~~| ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ )~~~~--~~~ 2101 |~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~(~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~-~~~ ~~~~~~~)~~ ~~~~~-~~~~ ~~-~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.A.inca 2717 bp RNA RNA 11-JAN-191 DEFINITION Chloroplast Alnus incana. ACCESSION No information KEYWORDS No information. SOURCE Chloroplast Alnus incana. ORGANISM Chloroplast Alnus incana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U03555 LOCUS AIU03555 1842 bp DNA PLN 01-JUN-1994 DEFINITION Alnus incana chloroplast 16S rRNA gene, complete sequence. ACCESSION U03555 KEYWORDS . SOURCE Alnus incana ORGANISM Chloroplast Alnus incana Eucaryotae; Embryophyta; Magnoliophyta; Magnoliopsida; Fagales; Betulaceae; Alnus. REFERENCE 1 (bases 1 to 1842) AUTHORS Johnson,D.A. TITLE Nucleotide Sequence of the 16S rRNA from the alder (Alnus incana) JOURNAL Thesis (1993) Biology, University of Ottawa STANDARD full automatic REFERENCE 2 (bases 1 to 1842) AUTHORS Johnson,D.A. TITLE Direct Submission JOURNAL Submitted (17-NOV-1993) Johnson D.A., University of Ottawa, 30 Marie Curie, Ottawa, Ontario, Canada STANDARD full automatic COMMENT NCBI gi: 495322 FEATURES Location/Qualifiers rRNA 175..1666 /product="16S ribosomal RNA" /gene="16S rDNA" /note="Sequence of 16S rRNA coding region defined by homology to previously defined sequences" source 1..1842 /organism="Alnus incana" /chloroplast BASE COUNT 465 a 418 c 581 g 378 t ORIGIN BASE COUNT 366 a 358 c 485 g 283 t 1225 others ORIGIN 1 |~~~~~~~~~ ~UCUCAUGGA GAG-UU(C-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGGACG|G G--------- -------aag u(gg------ 121 ---------- --u------- )guuu----- ---------- ------CC-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGAACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CC-CCGU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAA--- ---------- ---------- 481 GGA------- ------(--- -------GGA A------)-- -------|-- --UCCGCCUG 541 AGGA-GGG|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-CAAU AG)-CUUACC 601 AA|GGCGAUG AU|CAGUAGC UG|GUCC(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C-CUC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GC- UGGACGGA|G CAAUGCCGCG UGGAGGUAGA AGGCC(---U 781 ACG--)GG-U C--GUGAACU UC|UUUU-CC CGGAGAAGAA GC-------- (--------) 841 --------AA UGACG|GU-A UCU-GGGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUUUUAAG-| UCC-GCCGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-AG GCGGU--GGA -AAC-U|ACC -AA-G-CUGG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 AAAGAACACC AAC---GGC( GAAA)GC|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |GAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|GG CG-CUGUGCG ---------- --------(- 1441 ------uauc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAAAG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-GCG--A A------UCC UCUU-----( 1741 GAA-A-)GAG AG-GGG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCCa----- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( ccguugaguu )--------u 2101 |GGAACCCUG AGCAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAUCAUGCC CCUUAUGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG GGACAAAGGG UC----GCGA UCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGU-G AGCUAACC-C CAA-AAACCC 2341 GUCCUCAGUU CGGAUUGUAG GC(--UGCAA CUC)GCCUGC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAU GGGAGCUGG- CCAUGCCCGA 2521 AGUCGUU--- ACCUU-AACC -(-----aca a------)-G G-AGG-GGG- AU-GCCG-AA 2581 GG-CAGGGCU AGUGACUGGA GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUUU--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.C.papa 2717 bp RNA RNA 19-FEB-1998 DEFINITION Chloroplast Carica papaya.; . ACCESSION U76911 KEYWORDS . SOURCE Chloroplast Carica papaya. ORGANISM Chloroplast Carica papaya. REFERENCE 1 (bases 1 to 1563) AUTHORS Davis,M.J., Ying,Z., Brunner,B.R., Pantoja,A. and Ferwerda,F.H . TITLE Rickettsial relative associated with papaya bunchy top disease JOURNAL Curr. Microbiol. 36 (2), 80-84 (1998) STANDARD No information REFERENCE 2 (bases 1 to 1563) AUTHORS Ying,Z. and Davis,M.J. TITLE Direct Submission JOURNAL Submitted (01-NOV-1996) Tropical Research and Education Center, University of Florida, 18905 SW 280 Street, Homestead, FL 33031, USA STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U76911 BASE COUNT 363 a 354 c 480 g 276 t 1244 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~caU|GGC UCAGAUUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGGACG|G G--------- -------aag u(gg------ 121 ---------- --u------- )guuu----- ---------- ------CC-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGAACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CC-CCGU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAA--- ---------- ---------- 481 GGA------- ------(--- -------GGA A------)-- -------|-- --UCCGCCCG 541 AGGA-GGG|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-CAAU AG)-CUUACC 601 AA|GGCGAUG AU|CAGUAGC UG|GUCC(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGAUC--UC C(UA-CG)GG -A--GGCAG- CAGUAGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCU --GACGGA|G CAAUGCCGCG UGGAGGUAGA AGGCC(---C 781 ACG--)GG-U C--GUGAACU UC|UUUU-CC CGGAGAAGAA GC-------- (--------) 841 --------AA UGACG|GU-A UCC-GGGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUUUUAAG-| UCC-GCCGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-AG GCGGU--GGA -AAC-U|ACC -AA-G-CUGG AG-UA|CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 AAAGAACAGG AAC---GGC( GAAA)GC|A| CUCUG-CUG| GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |GAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|GG CG-CUGUGCG ---------- --------(- 1441 ------uauc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAAAG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-GCG--A A------UCC UCUU-----( 1741 GAA-A-)GAG AG-GGG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCCa----- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( ccguugaguu )--------u 2101 |GGAACCCUG AGCAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAUCAUGCC CCUUAUGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG GGACAAAGGG UC----GCGA UCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGU-G AGCUAACU-C CAA-AAACCC 2341 GUCCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAU GGGAGCUGG- CCAUGCCCGA 2521 AGUCGUU--- ACCUU-AACC -(-----gca a------)-G G--AG-GGGg AU-GCCG-AA 2581 GG-CAGGGCU AGUGACUGGA GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUUU--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.Cor.cr 2717 bp RNA RNA 21-AUG-1997 DEFINITION Chloroplast Corynaea crassa.; . ACCESSION U67744 KEYWORDS . SOURCE Chloroplast Corynaea crassa. ORGANISM Chloroplast Corynaea crassa. REFERENCE 1 (bases 1 to 1114) AUTHORS Nickrent,D.L., Duff,R.J. and Konings,D.A.M. TITLE holoparasitic angiosperms Structural analyses of plastid-encoded 16S rRNAs of JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1114) AUTHORS Nickrent,D.L. and Duff,R.J. TITLE Direct Submission JOURNAL Submitted (22-AUG-1996) Plant Biology, Southern Illinois University, Carbondale, IL 62901, USA STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U67744 BASE COUNT 561 a 154 c 203 g 447 t 1352 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~|~~~ ~~~~~~~~~~ ~~~-~~~~~~ 61 AAUACUU--A ACACAUGCAA GUUACAAA|U UU-------- ---------- -(-g------ 121 ---------- --gaaaa--- )--------- ---------- ------UUA- UUU--AGCGU 181 GCGGGUG-AG UA-UAAUUAA GA-ACUUAA- CUUA------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 CUU------- --AAAAAUUA UAUU------ ---------- --------UA A(UAAA)AAA 361 -AAAAAAAUA AA-AAAA-AA ---------- ---------- ---------- --------AU 421 U-------(U AAU---)--- ----AAU--- ---AUUU--- ---------- ---------- 481 AUU------- ------(--- -------uua a------)-- -------|-- --GAAAGGCU 541 AUAU----|- --------|- -UGAUUA-GU UAUUUGA-AA -AA(C-UAAA AA)-AUUUUC 601 AA|GACAUUU AU|CAAAAAU UG|AUUU(UA UC)GGAUGAU CAAU|CACAU UGGGA(AUUA 661 AAAAUG)ACU CAAA-UUCUU U(UUUUU)UA GA--AGCAG- CAGUGGGG-A AUUUUUCG-C 721 AAU-AAAC-( -GAAA)-GUU U-GACGAA|U UAAUUUUUAA UGAAAGAAGA AGGCU(---A 781 AAG--)AG-U C--GUAAAUA UC|uUUU-AU UAUAUAAAaa gu-------- (---auu-u) 841 --------ua ugaUA|AU-- UAU-AAUGAA -UAAGUAUC| GGCU-AAUU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACAGAA|GA UACAAGUGUU AUuCCAAAAU UAUUAGGC|G 961 UAAAAUGUUC UAAAAUU|GC UUUUUAAA-| UCG-uAUAUU aaaaa---ua au(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---aaa)auu au---AA-AA AUAUU--CGA -AAU-U|UUU -UA-G-Cuag AA-UU|uuau 1141 u--aaaaaaa agaga|aauu AACGUAG-UG UAAUG(GUAA AA)UAUAUAU AGA---UUAU 1201 UAGGAACUCC AAA---AUC( GAAA)GA|A| UCUUU-uuu| guaa---A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- AAUUAACAUU 1321 |CAA-CGACG AAAGUUGGGG UAUCAAACGG G(AUU-A-GA UAC)-CCCAA UAG-|UC-CC 1381 A-ACUGUAAA CAAUUAAU-- --AC|UA|au ua---uuuu- ---------- --------(- 1441 --------uu uau--)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|--aaaa-- uaaaauaugc (uaac)gcua 1561 --AAGUAUUU |U|GCCUGAG AAGUAAAUUC (GCAA)GAAU AAAACUCAAA GGAAUUGACG 1621 GGAAUCU-AU AAA------- AGCGAU|GGA GUAUGUGGUU UAAUUCG-(A UGCAGAG)CG 1681 UAAAAUCUUA CCAGUAUUug aaA----UG| -uu-uua--a -------uuu uuau-----( 1741 auaa--)aaa aa-aaa---- ---------- ----(auaua uaua-)---- ---------- 1801 ---------- -----|uaua uACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-UUCGU 1861 |ACC(GUGA) GGCGUUAGG( UUAAUU)CCU UUAACGAACG UAAaCCAAA| UAUUUU-U-U 1921 UUAU------ ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --acuaaaua )--------- 2101 |AUAAAAAAU AAAAAA-UAA UAGC(GAUAA ----)----- ---------- ---------G 2161 CUAUAGGAAG AUAAGGAUAA CGUC-AA--G UCAUUAUGCC CCUAAUAUUC UGGGCUAC-A 2221 CACGUAGUAC AAUGAA--UU AGACAAAAUU AA----UAAA U-UC------ ---------- 2281 ----(----G UAA-)----- ---------- ----GAAU-A UCAUA-AC-A UAU-AAACUU 2341 AUUCUAAGUU CAGAUUGAAG AC(--UGAAA CUC)GUCUUC ACGAAGUCGG AAUCGCU--- 2401 ---AGUAA-- CGUCGG(U-- -AAUUAU)AC GACGGUGAAU UA--uAAaaa ---------- 2461 -------UUU AGAUUUUGUA CACACUGCCC GUCACA-UUU UAAAAUUG-- --AUGAUuau 2521 UUAAAUUu-- -------aga -(--uu-uuu ugag---)-u cu-------- CU-AUAA-AA 2581 UA-UAUUUUC AAAAUUAUAA -UGAAGUCGU A~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.C.cocc 2717 bp RNA RNA 11-JAN-191 DEFINITION Cynomorium coccineum. ACCESSION No information KEYWORDS No information. SOURCE Cynomorium coccineum. ORGANISM Cynomorium coccineum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U67743 chl16sco.seq cynomorium coccineum ; 1480 chl16sco. chl16sco. BASE COUNT 397 a 329 c 441 g 313 t 1237 others ORIGIN 1 |--------- -UCUCAUGGA GAG-UU(C-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUUGUACU|G UA-------- ---------u a(ua------ 121 ---------- --a------- )ua------- ---------- ------UAU- AGU--GGCGC 181 ACGGGUGCAU AA-CACGUAA GA-ACCUAC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGAACA ACGU------ ---------- --------CU G(GAAA)UGG 361 -CCGAAAAUA CC-CCGU-UA ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAUA--- ---------- ---------- 481 GGA------- ------(--- -------GGA A------)-- -------|-- --UUCGCCCA 541 AGGA-GGG|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-CAAU AG)-CUUACC 601 AA|GGCGAUG AU|CAGUAGC UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-G-C U-GACGGA|G CAAUGCCGCG UGGAGGUAAA AGGCU(---U 781 AUG--)GG-U C--AUGAACU UC|UUUU-CC CAGCGAAuaa aa-------- (--------) 841 ---------a ugaCG|GU-A UCU-GGAGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGAGUCU GUAGGUG|GC UUUUUAAG-| UCC-GUCGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGU--A-AU ACGGU--GGA -AAC-U|AUC -AA-G-CUUG AG-UA|CGUU 1141 A-----GGGG CAGAG|GGAA UUUAUGG-UG GAGCG(GUUA UA)UGUGUAG AGA---UCAG 1201 AAAGAACACC AAC---GGC( GAAA)GC|A| CUCUG-CUG| GGACG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACACU 1321 |GAG-AGACG AAAGCUAGGG GAGCAAAUGG G(AUU-A-GA UAC)-CCCGG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|AG CG-CUGUGU- ---------- --------(- 1441 -------auc gacc-)c--- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|--GUGCAG UACU-GUAGC (UAAC)GCAU 1561 -UAAGUAUCC |C|GCCUGGG GAGUAUGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGGCG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAAAG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-GCG--A A------UCC UAUC-----( 1741 GAA-A-)GAU AG-GGG---U G--CC----- ----(CUCG- -----)---- -----GGAA- 1801 ---------- -----|CGUG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CCC CUAACGAGCG CAACCCUCA| UGUUUA-G-U 1921 UGCC------ ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( ---auaua-- )--------- 2101 |GGAACUCUG AGCAGACUGC CGGU(UAUAA ----)----- ---------- ---------G 2161 CCGGAGGAGG GUGAGGAUGA CGUC-AA--G UCAUCAUGCC CCUUAUGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGU--CG GGACAAAGGG CC----GCAA UACC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGC-G AGCUAACC-C CAA-AAACCC 2341 UUCCUCAGUU CGGAUUGAAG GC(--UGCAA CUC)GCCUAC AUGAAGUAGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU UU--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACUGCCC GUCACACUAU GGGAGCUGG- GCAUACCCGA 2521 A---AUU--- ACCUU-AACU -(--ac-aau uuua---)-A GuAGG-GGG- AU-GACG-AA 2581 GG-UAGGACU AGUGACUAGA GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUUU--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.C.rube 2717 bp RNA RNA 11-JAN-191 DEFINITION Cytinus ruber. ACCESSION No information KEYWORDS No information. SOURCE Cytinus ruber. ORGANISM Cytinus ruber. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U47845 chl16scr.seq cytinus ruber ; 1497 chl16scr. chl16scr. BASE COUNT 418 a 321 c 427 g 331 t 1220 others ORIGIN 1 |--------- -UCUCAUGGA GAG-UU(C-G A)UCCU|GGC UCAGGAUGAA CGC-UGGUGG 61 CAUGCUU--A ACACAUGCAA GUUGAACG|U AA-------- ---------a a(ug------ 121 ---------- --guc----- )uu------- ---------- ------UUA- AGU--GGCGA 181 ACGGGUGAGU AA-CGCGUAA GA-AUCUGU- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGAACA ACAG------ ---------- --------UU G(GAAA)CGU 361 -CUGCUAAUA CC-CCAU-AG ---------- ---------- ---------- --------AC 421 U-------(G AGG---)--- ----AGU--- ---AAAA--- ---------- ---------- 481 GGA------- ------(--- -----G-GAA A------)-- -------|-- --UCCGCCCA 541 AGUA-GGA|G -CUUGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-AAAU AG)-CUUACC 601 AA|GGCAAUA AU|CAGUAGC UG|GUCC(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC U(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -UAAA)-G-C U-GACGGA|G CAAUGCCACG UGAAGGUAAA AGGCC(---C 781 CUG--)GG-U C--AUGAACU UC|UUUU-AC CAGAgaauaa agc------- (--------) 841 --------aa ugaCG|GU-A UCU-GGUGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGA---AA-) UACAGAG|GA UGCAAGCGUU AU-CCGGAAU UAUUGGGC|G 961 UAAAGCGUCU GUAGAUG|GC UUUUUAAG-| UCU-GCCAUA AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGU-AC-AG GUGGU--AGA -AAC-U|AUA -AA-GACUUG AG-UU|UGGU 1141 A-----GGGG CAGAG|GGAA UUUUCGG-UG GAGCG(AUAA AA)UGCAUAG AGA---UCGG 1201 AAAGAACACC AAU---GGC( GAAG)GC|A| CUCUG-CUG| GGCCA--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACAUU 1321 |GAG-AGACU AAAGCUAGGG GAGCAAAUGG G(AUU-A-GG UAC)-CCCAG UAG-|UC-CU 1381 A-GCCAUAAA CGAUGGAU-- --AC|CA|AG UG-CUGUGUG ---------- --------(- 1441 ------aauc gauc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CAUGCAG UGCU-CUAGC (AAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 UGGGCCC-GC ACA------- AGCGAU|GGA GCAUGUCGUU UAAUUCG-(A UGCAAAG)CG 1681 AAGAACCUUA CCAGGGCUUG UUA----UG| -CC-GCG--A A------UAC UCUU-----( 1741 GAA-A-)GAG AG-GAG---U G--CC----- ----(CUAG- -----)---- -----GGAA- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CCC AUAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCC---AAu ac-------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( ---uua---- )--gu---UU 2101 |GGAACUCUA AACAUACUGC CGGU(GUUAA ----)----- ---------- ---------G 2161 UCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAUCAUGCC CCUUAUGCCC UGGGCUAC-A 2221 CACAUGCUAC AAUGGA--CA GGACAAAGGA UU----GUAA GUCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGUU-U AGAUAACU-C CAA-AAACCU 2341 GUCCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU UA--GUU--- ---------- 2461 -------CUC GGGCCUUGUA CACACCGCCC GUCACACUAA AAGAGCUGG- CUUUGUCCUA 2521 AGUCAUUUUU ACCUU-AACC -(---a-caa a------)-G G-AGG-GGG- AU-GCCA-AA 2581 GG-CAGGGCU AGUGAUUGGA GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUUU--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.H.afri 2717 bp RNA RNA 11-JAN-191 DEFINITION Hydnora africana. ACCESSION No information KEYWORDS No information. SOURCE Hydnora africana. ORGANISM Hydnora africana. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U67745 chl16shy.seq hydnora africana ; 1504 chl16shy. chl16shy. BASE COUNT 487 a 277 c 372 g 368 t 1213 others ORIGIN 1 |--------- -UCUCAUGGA GAG-UU(C-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUUGAACG|A GA-------- ------aaua g(aa------ 121 ---------- --caa----- )cuauu---- ---------- ------UCU- AGU--AGCGA 181 ACGGGUGCGU AAUUACAUAA GA-ACUUAU- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------U 301 UAagaaggaa auaacaaAUA ACAA------ ---------- --------au g(GAAA)cau 361 -UUGCUAAUG UC-CUAU-AA ---------- ---------- ---------- --------GC 421 U-------(G AAA---)--- ----AGU--- ---AAAA--- ---------- ---------- 481 GGA------- ------(--- -----u-uaa a------)-- -------|-- --UCCACUAA 541 AGGU-AAG|G -CUUAUGU|- C----UA-GU UAGUUGG-UA -AG(G-UAAC AG)-CUUAAC 601 AA|GACAAUG AU|CAGUAAU UG|GUCU(GA GA)GGAUGAU CAAU|CACAC UGGAA(CUGA 661 GAUAAG)GUC CAGA-C--UC C(UA-CG)GG -U--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-G-C U-GACGGG|G CAAUGUUGCG UGAAGGCAGA AGGCC(---G 781 AUA--)GG-U U--GUAAACU UC|UUUU-GU GAGAAAAuaa gga------- (--------) 841 -------aaa ugaCA|GU-A UCU-CAAGAA -UAAGCAUC| GGCU-AACU- UUGUG(CCA- 901 -GCAGCC|GC GGU---GA-) UACAGAG|GA UGCGAGCAUU AU-CCGGAAU UAUUGGGC|G 961 UAAAGUGUUU UAAGGUG|GC UUUAUAAG-| UCU-AUCGUU AAAUCUCAGA GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACU CUGA-UU-AG GCGAU--UGA ---C-U|AUU -AA-G-CUAG AGCUU|UGAA 1141 U-----AAAG CAAGG|GGAA UUUCUAA-UG AAGCG(GUUA AA)UGCGUUG AGA---UUGG 1201 AAAGAACACC AAG---GGC( GAAA)GC|A| CUCUG-CUG| GGCCA--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- AAUUGACACU 1321 |GAU-AAACG AAAGCUAGGG UAGCGAGAGG G(AUU-A-GA CAC)-CCCAA UAG-|UC-CU 1381 A-GCUGUAAA CAAUGGAU-- --AC|UU|AG C-AUUACUAU ---------- --------(- 1441 ------auga aaag-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-AUAGCUA AGCUuAAAGC (UAAC)GCAA 1561 -UAAGUAUCC |C|GCCUGGG AAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGGCG 1621 GGGGUUC-AC GCA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAAAG)CG 1681 AAGAACCUUA CCAGGGAUUG U-A----UG| -UC--GU--A A------UCU UUCU-----( 1741 GAAAA-)AGU AA-GA----u a--cguauuu auuu(-aau- -----)aaau aaauacgua- 1801 ---------- -----|---G A-CA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CCCGU 1861 |GCU(GUCA) AGCGUAGGG( UUAACU)CCC AUAACGGGCG CAACUCCCA| UGUUUA-G-U 1921 UACC------ ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --aauuuau- )--------- 2101 |GGUACUCUA AACAAACAGC UAAU(GAUAA ----)----- ---------- --auacuaaA 2161 UUAGAGGAAG GUGGGGAAGA CGUC-AA--G UCAUCAUGCC CUUUAUACUC UGGGCUAC-A 2221 CGCGUGCUAC AAUGGC--UG GGACAAAAUG UU----GCAA UUCU------ ---------- 2281 ----(----G UAA-)----- ---------- ----AGAUAU AGCAAAAC-A UAA--AACCC 2341 AGUCUCAGUU CGGAUU-CGG GC(--UGCAA CUC)GCCCGC AUGAAGUCGG AAUCGCU--- 2401 ---AGUAAU- CGCUGG(UC- -AGCAAU)AC AGCGGUGAAU AA--GUC--- ---------- 2461 -------ACC GGACCUUGUA CACACCGCCC GUCACACUCA GGAAAUUGG- UCAUGCCcua 2521 acucauu--- ---------- -(--uu-aau au-----)-- --------a- au-gaua-aa 2581 gg-ugaGGCU GGUAACUAGA GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUUU--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.M.yama 2717 bp RNA RNA 11-JAN-191 DEFINITION Mitrastema yamamotoi. ACCESSION No information KEYWORDS No information. SOURCE Mitrastema yamamotoi. ORGANISM Mitrastema yamamotoi. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U67742 chl16smy.seq mitrastema yamamotoi ; 1465 chl16smy. chl16smy. BASE COUNT 438 a 287 c 391 g 349 t 1252 others ORIGIN 1 |--------- -UCUCAUGGA GAG-UU(C-G A)UCCU|GGC UCAGGAUGAC UGG-CGGCUG 61 UAUGCUU--A ACACAUGCAA GUCUUACU|A UA-------- ---------- -(aa------ 121 ---------- --ac------ )--------- ---------- ------UUU- AGU--GGCGA 181 ACGGGUGAGU GA-CGCGUAA GA-AUCUGC- CCCU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------U 301 UAG------- -----AAgua ACGA------ ---------- --------UG G(GAAA)CUA 361 -UUGCUAAUA UC-CCAU-AG ---------- ---------- ---------- --------GC 421 U-------(G AAG---)--- ----AGU--- ---UAAA--- ---------- ---------- 481 AGAA------ ------(--- -------gaa -------)-- -------|-- -UUCUCUACA 541 GGGA-AGA|G -CUUACGU|- CUGAUUA-GC UAGUUGG-UA -CG(A-UAAU AG)-CUUACC 601 AA|GGCUGUG AU|CAGGAGC UA|GUUC(GA GA)GGAUGAU CAGC|CACAC UGGAA(CUGA 661 GACAAG)GUC CAGA-C--UC C(UA-UG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-G-C U-GACGGG|G CAAUACCGCG UGAAGGUAGA AGGCC(---U 781 ACG--)GG-U C--GUAAACU UC|UUUU-AC CAAAAAAgaa cua------- (--------) 841 ---------- --aCA|GU-A UUU-GGGGAA -UAAGCAUC| GGCU-AACU- UUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGAGUCU GUAGGUG|GC UUUUUAAG-| UCU-GCUGUC AAAUACCUAG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CGGG-GA-AG GCAAC--AGU -GAC-U|AAA -AA-G-CUUG AG-UA|UGAU 1141 A-----AGGG AAGAG|GGAA UUUCUGA-AG GAGCG(AUGA AA)UGCAUAG AUA---UCAG 1201 AAAGAACGCC GAA---GGU( GAAA)AC|G| CUCUU-CUG| UAUUU-ga-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACAUU 1321 |GAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA GAC)-CCCAG UAG-|UC-CU 1381 A-GCUGUAAA CGAUGGAUgg auAC|UA|AG UA-UUGUAUG ---------- --------(- 1441 -------uuu gauc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CAUUCAG UACU-ACAAC (UAAC)GUGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCUC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAAAG)CG 1681 AAGAACCUUA CCAGGGCUUG ACga---UG| aUCcGCG--A A------UCU UUUU-----( 1741 GAA-A-)AUU AA-GAG---U G--CC----- ----(UUAG- -----)---- -----GGAA- 1801 ---------- -----|UGCG AACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUCA) GGUGUUGUG( UUAAGU)CCC GCAACGAGCG CAACCCUUA| UAUUUA-G-U 1921 UACC------ ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --uuguuu-- )--------- 2101 |GGAACUCUA AAUAAACAGC UGGA(AAUAA ----)----- ---------- ---------U 2161 CUAGAGGAAG GAGAGGAUUA CGUC-AA--G UCAUCAUGCC CCUUAUGCCC UGGGCAAC-A 2221 CACGUGCUAC AAUGGU--CG GGACAAAGAA uaauuuGUGA ACUU------ ---------- 2281 ----(----G CAA-)----- ---------- ----GAGU-G AACUAAUU-U CAA--AACCC 2341 GAUCACAGUU CGAAUUGUAG GC(--UGAAA CUC)GCCUAC AUGAAGCCGA AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCUAU)AC GGCGGUGAAU AU--GUU--- ---------- 2461 -------ACC GGGCCUUGUA CACACCGCCC GUCACACUCU GGAAGUUGU- CCCUGUUCUA 2521 Aauca----- ---------- -(---a-aaa a------)-- ---------- -u-gacu-AA 2581 AA-UAGAGUU AAUGACUAGA GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUUU--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.Bda.am 2717 bp RNA RNA 21-AUG-1997 DEFINITION Chloroplast Bdallophyton americanum.; . ACCESSION U67740 KEYWORDS . SOURCE Chloroplast Bdallophyton americanum. ORGANISM Chloroplast Bdallophyton americanum. REFERENCE 1 (bases 1 to 1483) AUTHORS Nickrent,D.L., Duff,R.J. and Konings,D.A.M. TITLE Structural analyses of plastid-encoded 16S rRNAs of holoparasitic angiosperms JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1483) AUTHORS Nickrent,D.L. and Duff,R.J. TITLE Direct Submission JOURNAL Submitted (22-AUG-1996) Plant Biology, Southern Illinois University, Carbondale, IL 62901, USA STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U67740 BASE COUNT 429 a 279 c 397 g 361 t 1251 others ORIGIN 1 |--------- -NNNNNNNNN NNN-NN(C-G A)UCCU|GGC UCAGGAUGAA CGC-UAGCAG 61 CAUGCUU--A ACACAUGCAA GUUGUACG|G UA-------- ---------a g(ug------ 121 ---------- --uug----- )uu------- ---------- ------UAC- AGU--GGCGA 181 ACGGGUGAGU AA-CACGUAA GA-AUAUAA- UCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GGGGAAAU ACUA------ ---------- --------CU U(GGAA)CAA 361 -UUGCUAAUA UC-CCAU-UU aauuuauua- ---------- -------g-- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAA--- ---------- ---------- 481 GGAAU----- ------(--- auaaau-aaa a------)-- -------|-- ACAUCgCCUA 541 AGGA-GUA|G -CUUACGU|- CUGAUUA-GC UAGUUGG-UA -AG(G-UAAU AG)-CUUACC 601 AA|GGCUAUU AU|CAGUAGC UG|GUUC(GA GA)GGACGAU CAGC|CACAC UGGGA(CUGA 661 GAUAUG)NNN CAGA-C--UC U(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGU-( -GAAA)-ACC U-GACGGA|G CAAUGCCGCG UGAAGGUAAA AGGCC(---U 781 AUG--)AG-U C--AUAAACU UC|UUUU-AU UAGUAUAAaa ---------- (--------) 841 --------ua ugaUA|GU-A UCU-AAGGAA -UAAGCAUC| GGCU-AAUU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACAGAA|GA UGCAAGCGUU AU-CUGGAAU UAUUGGGC|G 961 UAAAGCGUCU AUAGGUG|GC UUUUUAAG-| UCC-AACGUU AAAUAACAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CUGU-GC-AG GCGGUu-GGA -AAC-U|ACU -AG-AgCUGG AG-UA|UGGU 1141 A-----GGGG CAGAG|GGAA UUUUUGG-UG UAGCG(GUGA AA)UGCGUAG AGA---UCUU 1201 AAAGAACACC AAG---GGC( AAAA)GC|A| CUCUG-UUG| GGCCU--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACACU 1321 |GAU-AGACG AAAGCUAGGG UAGCAAAUGG G(AUU-A-GA UAC)-CUCAG UAG-|UC-UU 1381 A-GCUGUAAA CUAUGGAU-- --AC|UA|AG CG-UUGUUCG uauga----- --------(- 1441 ------acuc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UGCU-GUAGC (UAAC)GCAU 1561 -UAAGUAUCC |C|GCCUGGG GAGUAUGUUC (GCAA)GAAU AAAACUCAAA GGAAUUGACG 1621 GGGGCUC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAAAG)CG 1681 AAGAACCUUA CCAGGGCUUG g-ACA--UG| -CC-ACG--A A------UCU UCUA-----( 1741 GAA-A-)UGG AG-GAG---U G--CC----- ----(uugAa ----u)---- -----GGAA- 1801 ---------- -----|CGUG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CUC GCAACGAGCG CAACCCUCA| UGUUUA-G-U 1921 UGCC------ ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( auugucaguu )--------- 2101 |GGAACUCUG AACAGACUGC UGAU(UAUAA ----)----- ---------- ---------G 2161 UUAGAGUAAG GUGAGGAGGA UGUC-AAcuG UCAUCAUGCC CUUUAUGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGA--CG GUACAAAGGA au---uGAAA CCUC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGU-A AGCCAACU-C CAA-AAAACC 2341 GUCCUUAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGUCGG AAUCGCU--- 2401 ---AGUAAU- CGCAGG(UC- -AGCCAU)AC UGCGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACUGCCC GUCACACUAU GGAAAUUAG- UUAUGUCCGA 2521 AGUCAUU-UU ACCUU-AA-U -(---a-uaa gg-----)-G --AGG-GGU- AU-GCCU-AA 2581 GG-CAGGACU AAUGAUUGAA GUGAAGUCGU AACAA~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~-|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.Pil.th 2717 bp RNA RNA 21-AUG-1997 DEFINITION Chloroplast Pilostyles thurberi.; . ACCESSION U67741 KEYWORDS . SOURCE Chloroplast Pilostyles thurberi. ORGANISM Chloroplast Pilostyles thurberi. REFERENCE 1 (bases 1 to 1464) AUTHORS Nickrent,D.L., Duff,R.J. and Konings,D.A.M. TITLE holoparasitic angiosperms Structural analyses of plastid-encoded 16S rRNAs of JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1464) AUTHORS Nickrent,D.L. and Duff,R.J. TITLE Direct Submission JOURNAL Submitted (22-AUG-1996) Plant Biology, Southern Illinois University, Carbondale, IL 62901, USA STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U67741 BASE COUNT 484 a 195 c 290 g 495 t 1253 others ORIGIN 1 |--------- -nnnnnnnnn nnn-nn(n-n n)nnnn|nnn nnnnnnnnnn nnn-nnnnnn 61 nnnnnnn--n ACACAUGCAA GUUUUACU|u u--------u auc-uaacac u(uu------ 121 ---------- --uuuauu-u )gguguuu-- -ugauaauaa auu----aa- AGUAAGGCGA 181 ACGGGUGAGU AA-UAUAUAA GA-AUCUAC- cauu------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- --------cA 301 AUu------- ---------- ---------- ---------- ---------- -(----)--- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 --------(- ------)--- ---------- ---------- ---------- ---------- 481 ---------- ------(--- -----u-uua u------)-- -------|-- -----aAUUa 541 augA-UGA|G -CUUAUAU|- CUAAUUA-GU UUGUUGG-CG -GG(G-UAA- GG)-CCUACC 601 AA|GACUUUG AU|UAGUAGU UG|GUUU(GG AA)GAAUGAU CAGC|CACAC UAGGA(CUGA 661 AACAAG)GCC UAGA-CUAAU U(UU-UU)AA -UUAGuCAG- CAGUGGGG-G AUAUUCUG-C 721 AAU-GGGCA( auaag)UGCC U-GACAGA|G UAAUAUCGAG Uuaa------ --cuc(---A 781 AAU--)ga-g u--------u ua|uuuc-uu aaaagauuaa u--------- (--------) 841 --------ua agaaG|GU-A uuu-uaagaa --AAGUAUU| GGCU-AACUc CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACAGGG|AA UGCAAGCGUU AU-UCGGUUU AAUUAGGU|G 961 UAAAAGGUUg uUAGGCu|UU UCGUUAAG-| UG-------- ---------- --(uuuuguu 1021 aaaguccaaa auuauuuaac cauuccuuaa uuauaaauuu uauaguuuuu uuggggugca 1081 uuu---)--- ---------- --------ca -uac-u|aac -ag-A-AUGG AG-UA|UUAA 1141 AcacaaAAGA UAGAU|AGAA CCUUAUGAUG AA-CA(AUUA AA)UG-UUUU AAA---UAUA 1201 AGGGACUGCC AAU---GGU( GAAG)AC|A| AUCUA-UUA| UGUUA--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACGCU 1321 |GAGucaACG AAAGC-acGG GAG-AAAUGG G(AUUuA-GA GAC)-CCCAG UAA-|UC-GU 1381 AuGCUGUAAA UUUUGAAU-- --AC|UA|GG CU-AUAAAca aaAGAAGAcu uuacuGGuu- 1441 ------(cca uu)a-acuca guuuauuGGa augcaaguuu UCuuuuCCuu uUUUUUUUaa 1501 |uauauauua auauuuuaua uauaguauau a|uuuUUUGU GGCC-ACAGU (UAAC)ACGU 1561 uUAAGUAUUG |U|ACCUGGA AAGUACGUCC (GCAA)GGAU GAAAUUCAAA GGAAUUGGCG 1621 UGAAUCU-UU ACAuuuuuac AACGAU|GGA GCAUGUGGUU UAAUUCG-(A CAAAGAG)CG 1681 AAAAACAUUA UCAAGGUUUA AC-------| ---------- ---------- ---------( 1741 ------)--- ---------- ---------- ----(----- -----)---- ---------- 1801 ---------- -----|---- ----|-|-GG UGGUGCAUG| GCU|GUua-- -|----UCGU 1861 |GCU(GUGA) AGUGUCAGG( UUAAGU)CCU GuaACGAGCG CAACCCUUA| guaauuug-u 1921 uguu---uaa uu-------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( ---aua---- )--aa--uaa 2101 |agaacu-aa uuauGACUuc uuaa(uaaua caua)----- ---------- ---------a 2161 aaagAGGAA- G-AAGGACAA AAAC-AA--G uaaaCUUGCC CC-uauACUU UGAGCAAC-A 2221 CGCGUGCUAC AAUGGA-AAA UAACAAAg-- ---------- ---------- ---------- 2281 ----(u-uuu auu-)----- ---------- ---------- ---------- cuu-AAAUAU 2341 UUCCUCAGUU CGGAUUGUAu au(ggauuaa aau)GCCUAC AUGAAGUUGA AAUCGUAuuu 2401 ugaAGUAAU- CGUaa-(aa- -AGgucc)-u uACGGUGAAg auuuGUUuua aauuuuuuuu 2461 uauuucguaA AGGUUUCGUA CAUACUGCCC GUCACGUUCC GAugauuac- guuuuacuua 2521 aaguuuuu-- --------CC -(-----uaa -------)-G G-A-----a- ag-auga-au 2581 gu-aaaauu- -guCAUUGUA AUGAAGUCGU AACAAGGUAG CUGUGUC(GG AA)GGUGCGG 2641 nnnnnnnnnn nnnnnn--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS (3)-strame 2717 bp RNA RNA 17-JAN-1994 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 2717 others ORIGIN 1 |......... .......... ...-...... .......... .......... .......... 61 .......... .......... .....--.-. .......... ...------- ---------- 121 ---------- ---------- ---------. ......---- -----..... ...--...-- 181 ---------- -------... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......--. 301 ...------- --....---- ---------- ---....... .....---.. ....--.... 361 -......... .-...-..-. ---------- ---------- -------... ..-....... 421 ..------.. ........-- ----...... .......... ..-------- ---------- 481 .......... .-..-....- .......--. .......... .......... ........-. 541 ....-..... -......... .........- -......... .-...-.... .......... 601 ......---- -.-.....|. .......... ...|.....| ...--..... .......... 661 ......-... .......-.. |...-..... -.--....-- -......... .....-..-. 721 .......... -...------ ---------- ---------- ---------- ---------- 781 ---------- ----...... .....----- --........ ..-.....-. |..-----.. 841 .--------- ------.... ......-... .......... .........- .........- 901 --.....-.. ...---..-| ......|... .-........ ..-....... ........|. 961 .......... .......... ........-. |..-...... .......... .......... 1021 .......... .......... .......... .......... .......... ....------ 1081 ---...-..- .......-.| .....---.. ......-... -..-.----. .|-....... 1141 ..----.... .......... ....------ -......-.. ...------- ---------- 1201 ---------- ---------- |--------- ---------- ...-.--... .......... 1261 .......... .......... .......... .........- ---------- ....-..... 1321 -....|.... .......... .......... .....-.... .-------.. .|.--..... 1381 ...-...-.. ........-- --..-..... ..-..-.... .-.....--- ---------- 1441 --------.. ..---..... ....--.--. ....----.- -..--..--- ---------- 1501 ---------- ---------- ---------- --....---- --------.. .......... 1561 -....|.... ..|..-.... .......... .....-.... .......... .......... 1621 ......-... .......... ......-... .......... .......... .....----- 1681 -.-------. .......... ....---..| ...-...... .------... ......---. 1741 ...-...... ..-....... .......--- ----...--- ------.--- -----..... 1801 ..-------- -----..... .--.|..... ..---..... ..-------- --........ 1861 .....--.-- .--....... ...------- ---------. .-........ ......-... 1921 ....-..... .......-.- -......... .........- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------. .......--- ...--..... 2101 .......... ....|||... .......... ----..---- ---....... ...------. 2161 .......... .......... .......--. .......... .......... ........-. 2221 .......... .......-.. .......... ...---.... ....------ ---------- 2281 ----.----. ...-...... .......... .......... ........-. .......... 2341 .......... .......... ...--..... .......... .......... .......--- 2401 ---....... .......... -......... .......... ...-....-- ---------- 2461 -------... .......... .......... .......... .......... .......... 2521 .......--- .......... .......... .......... .-........ .......-.. 2581 ..-....... .......... .......... .......... .......... .......... 2641 .......... .......-.. .......... .......... .......... .......... 2701 .......... ......| // LOCUS chl.O.si.1 2717 bp RNA RNA 11-JAN-191 DEFINITION Odontella sinensis. ACCESSION No information KEYWORDS No information. SOURCE Odontella sinensis. ORGANISM Odontella sinensis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: Z67753 LOCUS OSCHLPLXX 119704 bp DNA PLN 13-FEB-1996 DEFINITION O.sinensis chloroplast DNA, complete genome. ACCESSION Z67753 NID g1185127 KEYWORDS 16S ribosomal RNA; 16S rRNA gene; 23S ribosomal RNA; 23S rRNA gene; 30S ribosomal protein S10; 30S ribosomal protein S11; 30S ribosomal protein S12; 30S ribosomal protein S13; 30S ribosomal protein S14; 30S ribosomal protein S16; 30S ribosomal protein S17; 30S ribosomal protein S18; 30S ribosomal protein S19; 30S ribosomal protein S2; 30S ribosomal protein S20; 30S ribosomal protein S3; 30S ribosomal protein S4; 30S ribosomal protein S5; 30S ribosomal protein S6; 30S ribosomal protein S7; 30S ribosomal protein S8; 30S ribosomal protein S9; 50S ribosomal protein L1; 50S ribosomal protein L11; 50S ribosomal protein L12; 50S ribosomal protein L13; 50S ribosomal protein L14; 50S ribosomal protein L16; 50S ribosomal protein L18; 50S ribosomal protein L19; 50S ribosomal protein L2; 50S ribosomal protein L20; 50S ribosomal protein L21; 50S ribosomal protein L22; 50S ribosomal protein L23; 50S ribosomal protein L24; 50S ribosomal protein L27; 50S ribosomal protein L29; 50S ribosomal protein L3; 50S ribosomal protein L31; 50S ribosomal protein L32; 50S ribosomal protein L33; 50S ribosomal protein L34; 50S ribosomal protein L35; 50S ribosomal protein L36; 50S ribosomal protein L4; 50S ribosomal protein L5; 50S ribosomal protein L6; 5S ribosomal RNA; 5S rRNA gene; acp gene; acyl carrier protein; apocytochrome f; ATP synthase CF1; ATP synthase CFO; atpA gene; atpB gene; atpD gene; atpE gene; atpF gene; atpG gene; atpH gene; atpI gene; cfxQ gene; chaperonin; chlI gene; clp protease; clpC gene; complete genome; CP43 chlorophyll apoprotein; CP47 chlorophyll apoprotein; cytochrome b559; cytochrome b6; cytochrome b6/f complex; cytochrome c550; D1 reaction-center protein; D2 reaction-center protein; DNA-replication helicase; dnaB gene; dnaK gene; elongation factor tu; Fe-S polypeptide; ferredoxin; ferredoxin-binding protein II; groEL gene; orf 179; ORF 25; ORF 312; ORF 644; ORF113; ORF128; ORF148; ORF181; ORF204; ORF251; ORF263; ORF26a; ORF26b; ORF27; ORF29; ORF29a; ORF29b; ORF31; ORF319; ORF34; ORF355; ORF355 gene; ORF36; ORF380; ORF382; ORF41; ORF42; ORF44; ORF455; ORF46; ORF486; ORF497; ORF61; ORF64; ORF73; ORF74; ORF99; P700 apoprotein A1; P700 apoprotein A2; petA gene; petB gene; petD gene; petF gene; petG gene; petK gene; phosphoprotein; plastocyanin-binding; preprotein-translocase; protein I; protein J; protein K; protein L; protein M; protein N; protein T; protein W; protein X; psaA gene; psaB gene; psaC gene; psaD gene; psaE gene; psaF gene; psaI gene; psaJ gene; psaL gene; psaM gene; psbA gene; psbB gene; psbC gene; psbD gene; psbE gene; psbF gene; psbH gene; psbI gene; psbJ gene; psbK gene; psbL gene; psbN gene; psbT gene; psbV gene; psbW gene; psbX gene; PSI; PSII; rbcL gene; rbcR gene; rbcs gene; RNA polymerase; RNA polymerase b''-chain; RNA polymerase b'-chain; RNA polymerase b-chain; rpL1 gene; rpl11 gene; rpl12 gene; rpl13 gene; rpl14 gene; rpl16 gene; Rpl18 gene; rpL19 gene; rpl2 gene; rpl20 gene; rpl21 gene; rpl22 gene; rpl23 gene; rpl24 gene; rpl27 gene; rpL29 gene; rpL3 gene; rpL31 gene; rpl32 gene; rpl32' gene; rpl33 gene; rpL34 gene; rpl35 gene; rpl36 gene; rpL4 gene; rpl5 gene; rpl6 gene; rpoA gene; rpoB gene; rpoC1 gene; rpoC2 gene; rps10 gene; rps11 gene; rps12 gene; rps13 gene; rps14 gene; rps16 gene; rps17 gene; rps18 gene; rps19 gene; rps2 gene; rps20 gene; rps3 gene; rps4 gene; RPS5 gene; RPS6 gene; rps7 gene; rps8 gene; rps9 gene; rubisco large subunit; rubisco small subunit; secA gene; secY gene; thiG gene; trnA gene; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-fMet; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu; tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser; tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val; trnC gene; trnD gene; trnE gene; trnF gene; trnfM gene; trnG gene; trnH gene; trnI gene; trnk gene; trnL gene; trnM gene; trnN gene; trnP gene; trnQ gene; trnR gene; trnS gene; trnT gene; trnV gene; trnW gene; trnY gene; trsE gene; tufA gene; ycf12 gene; ycf16 gene; ycf24 gene; ycf25 gene; ycf3 gene; ycf30 gene; ycf31 gene; ycf32 gene; ycf33 gene; ycf35 gene; ycf39 gene; ycf4 gene; ycf40 gene; ycf41 gene; ycf42 gene; ycf43 gene; ycf44 gene; ycf45 gene; ycf46 gene; ycf47 gene; ycf5 gene; ycf6 gene; ycf7 gene; ycf9 gene. SOURCE Odontella sinensis. ORGANISM Chloroplast Odontella sinensis Eukaryotae; mitochondrial eukaryotes; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Biddulphiophycidae; Eupodiscales; Eupodiscaceae; Odontella. REFERENCE 1 (bases 1 to 119704) AUTHORS Kowallik,K.V. JOURNAL Unpublished REFERENCE 2 (bases 1 to 119704) AUTHORS Kowallik,K.V. TITLE Direct Submission JOURNAL Submitted (10-NOV-1995) K.V. Kowallik, Heinrich-Heine Universitaet Duesseldorf, Universitaetsstr. 1 Geb.26 13/02/46, D- 40225, Duesseldorf, FRG COMMENT NCBI gi: 1185127 FEATURES Location/Qualifiers source 1..119704 /organism="Odontella sinensis" /chloroplast misc_feature 1..7725 /note="IRa" tRNA 267..340 /gene="trnP" /product="tRNA-Pro (ugg)" CDS 478..1545 /gene="ORF355" /note="NCBI gi: 1185128" /codon_start=1 /db_xref="PID:g1185128" /translation="MGMSLQLLGINLRIKVILATSWLFENIAKVCGYPTKTLGMPIRT DVIPGYGLPIHQTRVPPFANPTTFLEAVFGNIPQPSTIEKFYYESPQDGYYNFYIPHY RNVVFLPDWLSKWIQLHFDLGIDTVGLETIRNTLFSMLVYFYFFAELRIMLSYFISIN PYTRPWVYLISLTDWIYDILFHLGISKRVVLLGFPLLPILIHAALGNLIDSLNHLVFT MPFLPSEGEPGEFLIDGTARKVLLFRYLPALWTSEPIPDRLREFWYTERPEIYQFMKK NYGHLDIDFLPDEILKQIYQFKHDQIDPNSLTKNVEQFKVLGAQLISDSTIDFYQFSN CFVHKQEILFTFFSDYMDRLI" rRNA 2210..3694 /gene="16S rRNA" /product="16S ribosomal RNA" tRNA 3761..3835 /gene="16S rRNA" /product="tRNA-Ile (gau)" tRNA 3838..3910 /gene="trnA" /product="tRNA-Ala (ugc)" rRNA 3976..6866 /gene="23S rRNA" /product="23S ribosomal RNA" rRNA 6938..7063 /gene="5S rRNA" /product="5S ribosomal RNA" CDS 7318..7428 /gene="ycf32" /note="NCBI gi: 1185129" /codon_start=1 /product="ORF36" /db_xref="PID:g1185129" /translation="MDSRLLVIAAPLLVAASWALFNIGRLAIQQIQRLSA" CDS 7563..7739 /gene="rpl32" /note="NCBI gi: 1185130" /codon_start=1 /product="50S ribosomal protein L32" /db_xref="PID:g1185130" /translation="MAVPKKRTSKAKKNARKSVWKKKADKAAKKSLSLAKSVLQGKTT SFVYSLYIDELFSI" CDS 7825..8073 /gene="psaC" /note="NCBI gi: 1185131" /codon_start=1 /product="PSI, Fe-S polypeptide SU VII, 9 kDa" /db_xref="PID:g1185131" /translation="MSHTVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKSGQIASSPR VEDCVGCKRCETACPTDFLSVRVYLGRLETTRSLGLAY" CDS complement(8139..9077) /gene="ycf5" /note="NCBI gi: 1185132" /codon_start=1 /product="ORF312" /db_xref="PID:g1185132" /translation="MDWDIIQNLSSNLVFGILLFAMTIYWISLSFFKWTKNLSQVGKI SAIVANILLFFILGSRWIVAGYFPLSNLYESLLFLTWTLLTIYLYVEFKTKSKLVGAI LIPVALLINGFANLTLSVDMQKSSPLVPALQSNWLMLHVSMMMLSYGTLIMGSLLCIL FLVISKYQDIDLQILDESSLPLYNIMLDYYEAKLFSPSDEVSELGKLKLLQSLDNWSY RIIGLGFPFLTIGIIAGGVWANEAWGSYWSWDPKETWALITWIVFATYLHSRITKGWE GKKTAILGGLGFFVIWICYLGVNFLGKGLHSYGWLS" CDS 9287..9427 /gene="ycf32" /note="A+T-rich; NCBI gi: 1185133" /codon_start=1 /product="ORF46" /db_xref="PID:g1185133" /translation="MEKIKKSYLLVAKLKFKYFCLKPYSLNSTTKFILKIIKNKSMLI FN" CDS 9482..9772 /gene="rps6" /note="NCBI gi: 1185134" /codon_start=1 /product="30S ribosomal protein S6" /db_xref="PID:g1185134" /translation="MSATKKYEMMILLTEEFNDSELKTWAFNYAKALRKLSASEISVI SRGKRDLSYYINNQKKGNFIQINFSSMPKYVDNFSKNLKFDSNVLRFLILNK" tRNA 9852..9922 /gene="trnN" /product="tRNA-Asn (guu)" CDS 9944..10729 /gene="thiG" /note="NCBI gi: 1185135" /codon_start=1 /function="involved in thiamine biosynthesis" /db_xref="PID:g1185135" /translation="MINNSDTLKIGNKTFNSRLMLGSGKYRTIENAVNSIITSDCEIL TVAVRRLPTKLTNDNTSFLKSLDWNKLWLLPNTAGSQTAEEAIRMAFLGHELACQLGQ EDNFFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTVLPYINADPMLALHLEDLGCA TVMPLGSPIGSGQGLNNISNLQIIIENSSIPVIIDAGIGTPSEAAKSMELGADGVLLN TAIAQAKTPEKMALAMKLAVEAGRLGYLAGRMEKNRMQVQVLH" CDS complement(10894..13551) /gene="clpC" /note="NCBI gi: 1185136" /codon_start=1 /product="caseinolytic-like Clp protease" /db_xref="PID:g1185136" /translation="MFEKFTEGAIKVIMLSQEEARRMGHNFVGTEQLLLGIIGQRHGI GARALKKQKVTLKKARREIELYIGRGTGFVASEIPFTPRAKRVLEMAVHEGKDLGQNF VGTEHILLALISESDGVAMRTLDKLGVNIPKLRNLILMYIEENQEEILRPLTQAEKFL LEREKKGSSTPTLDEYSENISKEAVDGKLDPVIGRDKEIHEVIKVLARRRKNNPVLIG EPGVGKTAVAEGLAQLIIAEKAPDFLDGNLLMALDLGSILAGTKYRGEFEERIKRIVE EVQNDSAIILVIDEIHTLVGAGAAEGAVDAANILKPALARGKFRCIGATTIDEYRKYI ERDPALERRFQPVHVKEPTVGVTIEILLGLRSKFEEHHTLSYHDKAVEQAAILADKFI ADRFLPDKAIDVLDEAGSRVRLENRRLPRGMKRLLKELQDTLRDKEESIKEHDFDIAK QLVDHEMEVRTHIRIMKQSILTNETLGLARKEIDTVLEGDVAEVIAGWTGIPVNKISD SESKRLLTMEETLHERLIGQHHAIVSVSKAIRRARVGLRNPDRPIASFIFAGPTGVGK TELTKALSEYMFGNEDSMIRLDMSEYMEKHTVAKLIGSPPGYVGYNEGGQLTEAVQTK PYSVVLLDEVEKAHPDVFNLLLQILDDGRLTDSKGRTIDFRNTMIIMTTNLGAKIIEK ESGIKPKTKQDKPAFRIDESGCLGWEPTPEPIKDSALFEKVTELVNEELKEFFRPEFL NRIDEIIVFNHLTKYDIWEICGLMVKQLQKRLEEKELTLEVDVSVRNLLTEEGYDPVY GARPLRRAVMRLLEDTLAQQCLSKPLYPGTILRVSRVKEEGTLASYTNDVKVEIDYRR VDPRLLEQAEEKKEQNQEETKQNILKTDA" tRNA 13780..13850 /gene="trnC" /product="tRNA-Cys (gca)" tRNA 13921..14006 /gene="trnL" /product="tRNA-Leu (uaa)" rRNA complement(47296..47421) /gene="trnR" /product="5S ribosomal RNA" rRNA complement(47493..50383) /gene="trnR" /product="23S ribosomal RNA" tRNA complement(50449..50521) /gene="trnR" /product="tRNA-Ala (ugc)" tRNA complement(50524..50598) /gene="trnR" /product="tRNA-Ile (gau)" rRNA complement(50665..52149) /gene="trnR" /product="16S ribosomal RNA" CDS complement(52814..53881) /gene="trnR" /note="NCBI gi: 1185184" /codon_start=1 /product="ORF355" /db_xref="PID:g1185184" /translation="MGMSLQLLGINLRIKVILATSWLFENIAKVCGYPTKTLGMPIRT DVIPGYGLPIHQTRVPPFANPTTFLEAVFGNIPQPSTIEKFYYESPQDGYYNFYIPHY RNVVFLPDWLSKWIQLHFDLGIDTVGLETIRNTLFSMLVYFYFFAELRIMLSYFISIN PYTRPWVYLISLTDWIYDILFHLGISKRVVLLGFPLLPILIHAALGNLIDSLNHLVFT MPFLPSEGEPGEFLIDGTARKVLLFRYLPALWTSEPIPDRLREFWYTERPEIYQFMKK NYGHLDIDFLPDEILKQIYQFKHDQIDPNSLTKNVEQFKVLGAQLISDSTIDFYQFSN CFVHKQEILFTFFSDYMDRLI" tRNA complement(54019..54092) /gene="trnR" /product="tRNA-Pro (ugg)" BASE COUNT 40523 a 19364 c 18721 g 41096 t ORIGIN BASE COUNT 412 a 303 c 422 g 348 t 1232 others ORIGIN 1 |--------- nnUAUUAAGA GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCCU--A ACACAUGCAA GUCGUACG|A GA-------- --------gu u(uu------ 121 ---------- --u------- )aac------ ---------- ------UCA- AGU--GGCGG 181 ACGGGUGAGU AA-CACGUGA GA-AUCUGC- CUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GGGGGACA ACAA------ ---------- --------CU G(GAAA)CGG 361 -UUGCUAAUA CC-CCAU-AU ---------- ---------- ---------- --------GC 421 U-------(u ucg---)--- ----AGU--- ---GAAAU-- ---------- ---------- 481 AGA------- ------(--- ----uu-ua- -------)-- -------|-- --UCUGCCUA 541 AAGA-GGA|G -CUCGCGG|- CUGAUUA-GC UUGUUGG-UA -AG(G-UAAU GG)-CUUACC 601 AA|GGCGACG AU|CAGUAUC UG|GUUU(GA GA)GGACGAU CAGA|CACAC UGGAA(CUGA 661 GACACG)GUC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-G-C U-GACGGA|G CAAUACCGCG UGAGGGAAGA CGGCC(---U 781 AUG--)GG-U U--GUAAACC UC|UUUU-CU CAGGGAGGAA A-uca----- (--------) 841 ---------a UGACG|UGUA CCU-GAGGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACGGAG|GA UGCAAGUGUU AU-CCGGAAU CACUGGGC|G 961 UAAAGCGUCU GUAGGUG|GU UUAAUAAG-| UCA-ACUGUU AAAUCUUGAG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACU UCAA-AA-UC GCAGU--CGA -AAC-U|AUU -AG-A-CUAG AG-UA|UAGU 1141 A-----GGGG UAAAG|GGAA UUUCCAG-UG GAGCG(GUGA AA)UGCGUAG AGA---UUGG 1201 AAAGAACACC GAU---GGC( GAAG)GC|A| CUUUA-CUG| GGCUA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUAACACU 1321 |CAG-AGACG AAAGCUAGGG UAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCUGUAAA CAAUGGAU-- --AC|UA|GA UG-UUGAACA G--------- --------(- 1441 -------auc gac--)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|CUGUGCAG UAUU-AAAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG AAGUAUGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGUUUG ACA----UG| -AU-ACG--A A------UUU CUUU-----( 1741 GAA-A-)GAA GA-AAG---U G--CC----- ----(GUUU- -----)---- -----GGAA- 1801 ---------- -----|CGUA UACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUA| UUUUUA-G-U 1921 UGCC------ ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --uuuuau-- )--------- 2101 |GGAACUCUA AAAAGACUGC CGGU(UAUAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GCGGGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACACCC UGGGCUAC-A 2221 CACGUGCUAC AUUGGG--CG AGACAAUGAG AU----GCUA CUCU------ ---------- 2281 ----(----G CGA-)----- ---------- ----AGAC-A AGCUAAUC-U -AU-AAACUC 2341 GUUCUAAGUU CGGAUUGUAG GC(--UGCAA CUC)GCCUGC AUGAAGGUGG AAUCGCU--- 2401 ---AGUAAU- CGCUGG(UC- -AGCUAU)AC AGCGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGAAGCUGG- UUAUGCCCGA 2521 AGUCGUU--- ACUCU-AACC -(--gu-uug ga-----)-G G-AGG----- AU-GCCU-AA 2581 GG-UAGAAUU AGUGACUGGG GUGAAGUCGU AACAAGGUAA CCGUACU(GG AA)GGUGCGG 2641 UUGGAUCACC UCCUUU--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.O.si.2 2717 bp RNA RNA 11-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: Z67753 LOCUS OSCHLPLXX 119704 bp DNA PLN 13-FEB-1996 DEFINITION O.sinensis chloroplast DNA, complete genome. ACCESSION Z67753 NID g1185127 KEYWORDS 16S ribosomal RNA; 16S rRNA gene; 23S ribosomal RNA; 23S rRNA gene; 30S ribosomal protein S10; 30S ribosomal protein S11; 30S ribosomal protein S12; 30S ribosomal protein S13; 30S ribosomal protein S14; 30S ribosomal protein S16; 30S ribosomal protein S17; 30S ribosomal protein S18; 30S ribosomal protein S19; 30S ribosomal protein S2; 30S ribosomal protein S20; 30S ribosomal protein S3; 30S ribosomal protein S4; 30S ribosomal protein S5; 30S ribosomal protein S6; 30S ribosomal protein S7; 30S ribosomal protein S8; 30S ribosomal protein S9; 50S ribosomal protein L1; 50S ribosomal protein L11; 50S ribosomal protein L12; 50S ribosomal protein L13; 50S ribosomal protein L14; 50S ribosomal protein L16; 50S ribosomal protein L18; 50S ribosomal protein L19; 50S ribosomal protein L2; 50S ribosomal protein L20; 50S ribosomal protein L21; 50S ribosomal protein L22; 50S ribosomal protein L23; 50S ribosomal protein L24; 50S ribosomal protein L27; 50S ribosomal protein L29; 50S ribosomal protein L3; 50S ribosomal protein L31; 50S ribosomal protein L32; 50S ribosomal protein L33; 50S ribosomal protein L34; 50S ribosomal protein L35; 50S ribosomal protein L36; 50S ribosomal protein L4; 50S ribosomal protein L5; 50S ribosomal protein L6; 5S ribosomal RNA; 5S rRNA gene; acp gene; acyl carrier protein; apocytochrome f; ATP synthase CF1; ATP synthase CFO; atpA gene; atpB gene; atpD gene; atpE gene; atpF gene; atpG gene; atpH gene; atpI gene; cfxQ gene; chaperonin; chlI gene; clp protease; clpC gene; complete genome; CP43 chlorophyll apoprotein; CP47 chlorophyll apoprotein; cytochrome b559; cytochrome b6; cytochrome b6/f complex; cytochrome c550; D1 reaction-center protein; D2 reaction-center protein; DNA-replication helicase; dnaB gene; dnaK gene; elongation factor tu; Fe-S polypeptide; ferredoxin; ferredoxin-binding protein II; groEL gene; orf 179; ORF 25; ORF 312; ORF 644; ORF113; ORF128; ORF148; ORF181; ORF204; ORF251; ORF263; ORF26a; ORF26b; ORF27; ORF29; ORF29a; ORF29b; ORF31; ORF319; ORF34; ORF355; ORF355 gene; ORF36; ORF380; ORF382; ORF41; ORF42; ORF44; ORF455; ORF46; ORF486; ORF497; ORF61; ORF64; ORF73; ORF74; ORF99; P700 apoprotein A1; P700 apoprotein A2; petA gene; petB gene; petD gene; petF gene; petG gene; petK gene; phosphoprotein; plastocyanin-binding; preprotein-translocase; protein I; protein J; protein K; protein L; protein M; protein N; protein T; protein W; protein X; psaA gene; psaB gene; psaC gene; psaD gene; psaE gene; psaF gene; psaI gene; psaJ gene; psaL gene; psaM gene; psbA gene; psbB gene; psbC gene; psbD gene; psbE gene; psbF gene; psbH gene; psbI gene; psbJ gene; psbK gene; psbL gene; psbN gene; psbT gene; psbV gene; psbW gene; psbX gene; PSI; PSII; rbcL gene; rbcR gene; rbcs gene; RNA polymerase; RNA polymerase b''-chain; RNA polymerase b'-chain; RNA polymerase b-chain; rpL1 gene; rpl11 gene; rpl12 gene; rpl13 gene; rpl14 gene; rpl16 gene; Rpl18 gene; rpL19 gene; rpl2 gene; rpl20 gene; rpl21 gene; rpl22 gene; rpl23 gene; rpl24 gene; rpl27 gene; rpL29 gene; rpL3 gene; rpL31 gene; rpl32 gene; rpl32' gene; rpl33 gene; rpL34 gene; rpl35 gene; rpl36 gene; rpL4 gene; rpl5 gene; rpl6 gene; rpoA gene; rpoB gene; rpoC1 gene; rpoC2 gene; rps10 gene; rps11 gene; rps12 gene; rps13 gene; rps14 gene; rps16 gene; rps17 gene; rps18 gene; rps19 gene; rps2 gene; rps20 gene; rps3 gene; rps4 gene; RPS5 gene; RPS6 gene; rps7 gene; rps8 gene; rps9 gene; rubisco large subunit; rubisco small subunit; secA gene; secY gene; thiG gene; trnA gene; tRNA-Ala; tRNA-Arg; tRNA-Asn; tRNA-Asp; tRNA-Cys; tRNA-fMet; tRNA-Gln; tRNA-Glu; tRNA-Gly; tRNA-His; tRNA-Ile; tRNA-Leu; tRNA-Lys; tRNA-Met; tRNA-Phe; tRNA-Pro; tRNA-Ser; tRNA-Thr; tRNA-Trp; tRNA-Tyr; tRNA-Val; trnC gene; trnD gene; trnE gene; trnF gene; trnfM gene; trnG gene; trnH gene; trnI gene; trnk gene; trnL gene; trnM gene; trnN gene; trnP gene; trnQ gene; trnR gene; trnS gene; trnT gene; trnV gene; trnW gene; trnY gene; trsE gene; tufA gene; ycf12 gene; ycf16 gene; ycf24 gene; ycf25 gene; ycf3 gene; ycf30 gene; ycf31 gene; ycf32 gene; ycf33 gene; ycf35 gene; ycf39 gene; ycf4 gene; ycf40 gene; ycf41 gene; ycf42 gene; ycf43 gene; ycf44 gene; ycf45 gene; ycf46 gene; ycf47 gene; ycf5 gene; ycf6 gene; ycf7 gene; ycf9 gene. SOURCE Odontella sinensis. ORGANISM Chloroplast Odontella sinensis Eukaryotae; mitochondrial eukaryotes; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Biddulphiophycidae; Eupodiscales; Eupodiscaceae; Odontella. REFERENCE 1 (bases 1 to 119704) AUTHORS Kowallik,K.V. JOURNAL Unpublished REFERENCE 2 (bases 1 to 119704) AUTHORS Kowallik,K.V. TITLE Direct Submission JOURNAL Submitted (10-NOV-1995) K.V. Kowallik, Heinrich-Heine Universitaet Duesseldorf, Universitaetsstr. 1 Geb.26 13/02/46, D- 40225, Duesseldorf, FRG COMMENT NCBI gi: 1185127 FEATURES Location/Qualifiers source 1..119704 /organism="Odontella sinensis" /chloroplast misc_feature 1..7725 /note="IRa" tRNA 267..340 /gene="trnP" /product="tRNA-Pro (ugg)" CDS 478..1545 /gene="ORF355" /note="NCBI gi: 1185128" /codon_start=1 /db_xref="PID:g1185128" /translation="MGMSLQLLGINLRIKVILATSWLFENIAKVCGYPTKTLGMPIRT DVIPGYGLPIHQTRVPPFANPTTFLEAVFGNIPQPSTIEKFYYESPQDGYYNFYIPHY RNVVFLPDWLSKWIQLHFDLGIDTVGLETIRNTLFSMLVYFYFFAELRIMLSYFISIN PYTRPWVYLISLTDWIYDILFHLGISKRVVLLGFPLLPILIHAALGNLIDSLNHLVFT MPFLPSEGEPGEFLIDGTARKVLLFRYLPALWTSEPIPDRLREFWYTERPEIYQFMKK NYGHLDIDFLPDEILKQIYQFKHDQIDPNSLTKNVEQFKVLGAQLISDSTIDFYQFSN CFVHKQEILFTFFSDYMDRLI" rRNA 2210..3694 /gene="16S rRNA" /product="16S ribosomal RNA" tRNA 3761..3835 /gene="16S rRNA" /product="tRNA-Ile (gau)" tRNA 3838..3910 /gene="trnA" /product="tRNA-Ala (ugc)" rRNA 3976..6866 /gene="23S rRNA" /product="23S ribosomal RNA" rRNA 6938..7063 /gene="5S rRNA" /product="5S ribosomal RNA" CDS 7318..7428 /gene="ycf32" /note="NCBI gi: 1185129" /codon_start=1 /product="ORF36" /db_xref="PID:g1185129" /translation="MDSRLLVIAAPLLVAASWALFNIGRLAIQQIQRLSA" CDS 7563..7739 /gene="rpl32" /note="NCBI gi: 1185130" /codon_start=1 /product="50S ribosomal protein L32" /db_xref="PID:g1185130" /translation="MAVPKKRTSKAKKNARKSVWKKKADKAAKKSLSLAKSVLQGKTT SFVYSLYIDELFSI" CDS 7825..8073 /gene="psaC" /note="NCBI gi: 1185131" /codon_start=1 /product="PSI, Fe-S polypeptide SU VII, 9 kDa" /db_xref="PID:g1185131" /translation="MSHTVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKSGQIASSPR VEDCVGCKRCETACPTDFLSVRVYLGRLETTRSLGLAY" CDS complement(8139..9077) /gene="ycf5" /note="NCBI gi: 1185132" /codon_start=1 /product="ORF312" /db_xref="PID:g1185132" /translation="MDWDIIQNLSSNLVFGILLFAMTIYWISLSFFKWTKNLSQVGKI SAIVANILLFFILGSRWIVAGYFPLSNLYESLLFLTWTLLTIYLYVEFKTKSKLVGAI LIPVALLINGFANLTLSVDMQKSSPLVPALQSNWLMLHVSMMMLSYGTLIMGSLLCIL FLVISKYQDIDLQILDESSLPLYNIMLDYYEAKLFSPSDEVSELGKLKLLQSLDNWSY RIIGLGFPFLTIGIIAGGVWANEAWGSYWSWDPKETWALITWIVFATYLHSRITKGWE GKKTAILGGLGFFVIWICYLGVNFLGKGLHSYGWLS" CDS 9287..9427 /gene="ycf32" /note="A+T-rich; NCBI gi: 1185133" /codon_start=1 /product="ORF46" /db_xref="PID:g1185133" /translation="MEKIKKSYLLVAKLKFKYFCLKPYSLNSTTKFILKIIKNKSMLI FN" CDS 9482..9772 /gene="rps6" /note="NCBI gi: 1185134" /codon_start=1 /product="30S ribosomal protein S6" /db_xref="PID:g1185134" /translation="MSATKKYEMMILLTEEFNDSELKTWAFNYAKALRKLSASEISVI SRGKRDLSYYINNQKKGNFIQINFSSMPKYVDNFSKNLKFDSNVLRFLILNK" tRNA 9852..9922 /gene="trnN" /product="tRNA-Asn (guu)" CDS 9944..10729 /gene="thiG" /note="NCBI gi: 1185135" /codon_start=1 /function="involved in thiamine biosynthesis" /db_xref="PID:g1185135" /translation="MINNSDTLKIGNKTFNSRLMLGSGKYRTIENAVNSIITSDCEIL TVAVRRLPTKLTNDNTSFLKSLDWNKLWLLPNTAGSQTAEEAIRMAFLGHELACQLGQ EDNFFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTVLPYINADPMLALHLEDLGCA TVMPLGSPIGSGQGLNNISNLQIIIENSSIPVIIDAGIGTPSEAAKSMELGADGVLLN TAIAQAKTPEKMALAMKLAVEAGRLGYLAGRMEKNRMQVQVLH" CDS complement(10894..13551) /gene="clpC" /note="NCBI gi: 1185136" /codon_start=1 /product="caseinolytic-like Clp protease" /db_xref="PID:g1185136" /translation="MFEKFTEGAIKVIMLSQEEARRMGHNFVGTEQLLLGIIGQRHGI GARALKKQKVTLKKARREIELYIGRGTGFVASEIPFTPRAKRVLEMAVHEGKDLGQNF VGTEHILLALISESDGVAMRTLDKLGVNIPKLRNLILMYIEENQEEILRPLTQAEKFL LEREKKGSSTPTLDEYSENISKEAVDGKLDPVIGRDKEIHEVIKVLARRRKNNPVLIG EPGVGKTAVAEGLAQLIIAEKAPDFLDGNLLMALDLGSILAGTKYRGEFEERIKRIVE EVQNDSAIILVIDEIHTLVGAGAAEGAVDAANILKPALARGKFRCIGATTIDEYRKYI ERDPALERRFQPVHVKEPTVGVTIEILLGLRSKFEEHHTLSYHDKAVEQAAILADKFI ADRFLPDKAIDVLDEAGSRVRLENRRLPRGMKRLLKELQDTLRDKEESIKEHDFDIAK QLVDHEMEVRTHIRIMKQSILTNETLGLARKEIDTVLEGDVAEVIAGWTGIPVNKISD SESKRLLTMEETLHERLIGQHHAIVSVSKAIRRARVGLRNPDRPIASFIFAGPTGVGK TELTKALSEYMFGNEDSMIRLDMSEYMEKHTVAKLIGSPPGYVGYNEGGQLTEAVQTK PYSVVLLDEVEKAHPDVFNLLLQILDDGRLTDSKGRTIDFRNTMIIMTTNLGAKIIEK ESGIKPKTKQDKPAFRIDESGCLGWEPTPEPIKDSALFEKVTELVNEELKEFFRPEFL NRIDEIIVFNHLTKYDIWEICGLMVKQLQKRLEEKELTLEVDVSVRNLLTEEGYDPVY GARPLRRAVMRLLEDTLAQQCLSKPLYPGTILRVSRVKEEGTLASYTNDVKVEIDYRR VDPRLLEQAEEKKEQNQEETKQNILKTDA" tRNA 13780..13850 /gene="trnC" /product="tRNA-Cys (gca)" tRNA 13921..14006 /gene="trnL" /product="tRNA-Leu (uaa)" rRNA complement(47296..47421) /gene="trnR" /product="5S ribosomal RNA" rRNA complement(47493..50383) /gene="trnR" /product="23S ribosomal RNA" tRNA complement(50449..50521) /gene="trnR" /product="tRNA-Ala (ugc)" tRNA complement(50524..50598) /gene="trnR" /product="tRNA-Ile (gau)" rRNA complement(50665..52149) /gene="trnR" /product="16S ribosomal RNA" CDS complement(52814..53881) /gene="trnR" /note="NCBI gi: 1185184" /codon_start=1 /product="ORF355" /db_xref="PID:g1185184" /translation="MGMSLQLLGINLRIKVILATSWLFENIAKVCGYPTKTLGMPIRT DVIPGYGLPIHQTRVPPFANPTTFLEAVFGNIPQPSTIEKFYYESPQDGYYNFYIPHY RNVVFLPDWLSKWIQLHFDLGIDTVGLETIRNTLFSMLVYFYFFAELRIMLSYFISIN PYTRPWVYLISLTDWIYDILFHLGISKRVVLLGFPLLPILIHAALGNLIDSLNHLVFT MPFLPSEGEPGEFLIDGTARKVLLFRYLPALWTSEPIPDRLREFWYTERPEIYQFMKK NYGHLDIDFLPDEILKQIYQFKHDQIDPNSLTKNVEQFKVLGAQLISDSTIDFYQFSN CFVHKQEILFTFFSDYMDRLI" tRNA complement(54019..54092) /gene="trnR" /product="tRNA-Pro (ugg)" BASE COUNT 40523 a 19364 c 18721 g 41096 t ORIGIN BASE COUNT 412 a 303 c 422 g 348 t 1232 others ORIGIN 1 |--------- nnUAUUAAGA GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCCU--A ACACAUGCAA GUCGUACG|A GA-------- --------gu u(uu------ 121 ---------- --u------- )aac------ ---------- ------UCA- AGU--GGCGG 181 ACGGGUGAGU AA-CACGUGA GA-AUCUGC- CUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GGGGGACA ACAA------ ---------- --------CU G(GAAA)CGG 361 -UUGCUAAUA CC-CCAU-AU ---------- ---------- ---------- --------GC 421 U-------(u ucg---)--- ----AGU--- ---GAAAU-- ---------- ---------- 481 AGA------- ------(--- ----uu-ua- -------)-- -------|-- --UCUGCCUA 541 AAGA-GGA|G -CUCGCGG|- CUGAUUA-GC UUGUUGG-UA -AG(G-UAAU GG)-CUUACC 601 AA|GGCGACG AU|CAGUAUC UG|GUUU(GA GA)GGACGAU CAGA|CACAC UGGAA(CUGA 661 GACACG)GUC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-G-C U-GACGGA|G CAAUACCGCG UGAGGGAAGA CGGCC(---U 781 AUG--)GG-U U--GUAAACC UC|UUUU-CU CAGGGAGGAA A-UCA----- (--------) 841 ---------a UGACG|UGUA CCU-GAGGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACGGAG|GA UGCAAGUGUU AU-CCGGAAU CACUGGGC|G 961 UAAAGCGUCU GUAGGUG|GU UUAAUAAG-| UCA-ACUGUU AAAUCUUGAG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACU UCAA-AA-UC GCAGU--CGA -AAC-U|AUU -AG-A-CUAG AG-UA|UAGU 1141 A-----GGGG UAAAG|GGAA UUUCCAG-UG GAGCG(GUGA AA)UGCGUAG AGA---UUGG 1201 AAAGAACACC GAU---GGC( GAAG)GC|A| CUUUA-CUG| GGCUA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUAACACU 1321 |CAG-AGACG AAAGCUAGGG UAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCUGUAAA CAAUGGAU-- --AC|UA|GA UG-UUGAACA G--------- --------(- 1441 -------auc gac--)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|CUGUGCAG UAUU-AAAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG AAGUAUGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGUUUG ACA----UG| -AU-ACG--A A------UUU CUUU-----( 1741 GAA-A-)GAA GA-AAG---U G--CC----- ----(GUUU- -----)---- -----GGAA- 1801 ---------- -----|CGUA UACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUA| UUUUUA-G-U 1921 UGCC------ ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --uuuuau-- )--------- 2101 |GGAACUCUA AAAAGACUGC CGGU(UAUAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GCGGGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACACCC UGGGCUAC-A 2221 CACGUGCUAC AUUGGG--CG AGACAAUGAG AU----GCUA CUCU------ ---------- 2281 ----(----G CGA-)----- ---------- ----AGAC-A AGCUAAUC-U -AU-AAACUC 2341 GUUCUAAGUU CGGAUUGUAG GC(--UGCAA CUC)GCCUGC AUGAAGGUGG AAUCGCU--- 2401 ---AGUAAU- CGCUGG(UC- -AGCUAU)AC AGCGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGAAGCUGG- UUAUGCCCGA 2521 AGUCGUU--- ACUCU-AACC -(--gu-uug ga-----)-G G-AGG----- AU-GCCU-AA 2581 GG-UAGAAUU AGUGACUGGG GUGAAGUCGU AACAAGGUAA CCGUACU(GG AA)GGUGCGG 2641 UUGGAUCACC UCCUUU--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.S.pseu 2717 bp RNA RNA 11-JAN-191 DEFINITION Skeletonema pseudocostatum. ACCESSION No information KEYWORDS No information. SOURCE Skeletonema pseudocostatum. ORGANISM Skeletonema pseudocostatum. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X82155 LOCUS skelpseu 1486BP (?1495 BP) DEFINITION skelpseudocostatum skel 76 cpDNA ORIGIN BASE COUNT 417 a 298 c 414 g 356 t 1232 others ORIGIN 1 |--------- -nnnnnUUUA AAG-UU(U-G A)UCMU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCCU--A ACACAUGCAA GUCGUACG|G GA-------- --------gu u(uu------ 121 ---------- --u------- )aac------ ---------- ------UCU- AGU--GGCGG 181 ACGGGUGAGU AA-CACGUGA GA-AUUUGC- CUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GGGGGAUA ACAA------ ---------- --------UU G(GAAA)CAA 361 -AUGCUAAUA CC-CCAU-AU ---------- ---------- ---------- --------GC 421 U-------(u ucg---)--- ----AGU--- ---GAAAu-- ---------- ---------- 481 GGAU------ ------(--- --uuau-auu u------)-- -------|-- -AUCCGCCUA 541 GAGA-GAA|G -CUCGCGG|- CUGAUUA-GC UUGUUGG-UA -AG(G-UAAG AG)-CUUACC 601 AA|GGCGACG AU|CAGUAUC UG|GUUU(GA GA)GGACGAU CAGA|CACAC UGGAA(CUGA 661 GACACG)GUC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-G-C U-GACGGA|G CAAUACCGCG UGAGGGAAGA CUGCC(---U 781 AUG--)GG-U U--GUAAACC UC|UUUU-UU CAGGGAGGaa u--------- (---caa--) 841 ---------- ugaCg|uguA CCU-GAAGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACGGAG|GA UGCAAGUGUU AU-CCGGAAU CACUGGGC|G 961 UAAAGCGUCU GUAGGUG|GU UUAAUAAG-| UCA-ACUGUU AAAUCUUGAG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACU UCAA-AA-UC GCAGU--CGA -AAC-U|AUU -AG-A-CUAG AG-UA|UAGU 1141 A-----GAGG UAAAG|GGAA UUUCCAG-UG GAGCG(GUGA AA)UGCGUAG AUA---UUGG 1201 AAAGAACACC GAU---GGC( GAAA)GC|A| CUUUA-CUG| GGCUA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUAACACU 1321 |CAG-AGACG AAAGCUAGGG UAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CAAUGGAU-- --AC|UA|GA UG-UUGAACA G--------- --------(- 1441 -------auc gac--)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|CUGUGCAG UAUC-AAAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG AAGUAUGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGUUUG ACA----UG| -AU-ACG--A A------UUU CUUU-----( 1741 GAA-A-)GAA GA-AAG---U G--CC----- ----(GUUU- -----)---- -----GGAA- 1801 ---------- -----|CGUA UACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUG| UUUUUA-G-U 1921 UGCC------ ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --uuuuau-- )--------- 2101 |GGAACUCUA AAAAGACUGC CGGU(UAUAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GUGGGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACACCC UGGGCUAC-A 2221 CACGUGCUAC AUUGGG--CG AGACAAUGAG AU----GCAA AUCU------ ---------- 2281 ----(----G UGA-)----- ---------- ----AGAC-U AGCUAAUC-U -AU-AAACUC 2341 GUUCUAAGUU CGGAUUGUAG GC(--UGCAA CUC)GCCUAC AUGAAGGUGG AAUCGCU--- 2401 ---AGUAAU- CGCUGG(UC- -AGCUAU)AC AGCGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGAAGCUGG- UUAUACCCGA 2521 AGUCAUU--- ACUCU-AACC -(-----auu u------)-G G-GGG-AGG- GU-GCCU-AA 2581 GG-UAGAAUU AGUGACUGGG GUGAAGUCGU AACAAGGUAA CCGUACU(GG AA)GGUGCGG 2641 UUGGAUCACC UCCUUU--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.O.dani 2717 bp RNA RNA 11-JAN-191 DEFINITION Ochromonas danica. ACCESSION No information KEYWORDS No information. SOURCE Ochromonas danica. ORGANISM Ochromonas danica. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X53183 ID CHOD16S standard; RNA; ORG; 1300 BP. XX AC X53183; XX DT 24-MAY-1990 (molec_type corrected) DT 24-MAY-1990 (annotation) XX DE Ochromonas danica chrysoplast 16S rRNA (part.) XX KW 16S ribosomal RNA; ribosomal RNA. XX OS Chloroplast Ochromonas danica OC Chloroplastidae; Chrysophyceae. XX RN [1] (bases 1-1300) RA Stackebrandt E.; RT ; RL Submitted (09-MAY-1990) on tape to the EMBL Data Library by: RL Stackebrandt E__ XX RN [2] (bases 1-1300) RA Witt D., Stackebrandt E.; RT "Disproving the hypothesis of a common ancestry for the Ochromonas RT danica chrysoplast and Heliobacterium chlorum"; RL Arch. Microbiol. 150:244-248(1988). XX CC *source:strain=SAG 933-7. XX FH Key From To Description FH FT RRNA <1 >1300 16S rRNA XX SQ Sequence 1300 BP; 370 A; 238 C; 341 G; 299 T; 52 other; BASE COUNT 370 a 238 c 341 g 299 t 1469 others ORIGIN 1 |--------- nnnnnnnnnn nnn~nn(n-n n)nnnn|nnn nnnnnnnnnn nnn-nnnnnn 61 nnnnnnn--n nnnnnnnnnn nnnnnnnG|A A--------- --------aa a(gg------ 121 ---------- --aaa----- )uuu------ ---------- ------UU-- AGU--GGCGA 181 ACGGGUGAGU AA-CGCGUGA GA-AUUUGC- CUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --AGAGAAUA ACAA------ ---------- --------UU A(GAAA)UAG 361 -UUGCUAAAA CU-CUAU-AU ---------- ---------- ---------- --------gc 421 n-------(g aga---)--- ----ugu--- ---gaaa--- ---------- ---------- 481 AAA------- ------(--- -----g-aaa -------)-- -------|-- --UUUGCCUA 541 AAGA-GAA|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UA -GG(G-UAAA GG)-CUUACC 601 AA|GGCGACG AU|CAGUAGC UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGAA(CUGA 661 GACACG)GUC CAGA-C--UC C(UA-CG)GG -A--GGCGG- CNGUGAGG-A AUUUUCNG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAACACCGCG UGAGGGAUGA AGGCU(---G 781 GCG--)AG-U N--GUAAACC UC|UUUU-CU CAAGGAGGAA GN-------- (--------) 841 --------UC UGACG|UU-A CUU-GAGGAA -UAAGCAUN| GGCU-AACC- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGGG|NA UGCAAGUGUU AU-CCGGAAU UAUUGGGC|G 961 UAAAGCGUCU GCAGGUG|GA UAAUUAAG-| UCU-UUUGUA AAAGCUUCGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UNA)ACC UGGA-AU-CU GCAAA--AGA -AAC-U|AUU -UA-U-CUAG AG-AG|UCAU 1141 A-----GAGG GAAAG|GGAA UUUCCAG-UG NAGCG(GUGA AA)UGCGUAG AGA---UUGG 1201 AAAGAACACC AAA---AGC( GAAA)GC|A| CUUUC-CUG| GGUGN--N-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CNCUGACANU 1321 |NAN-GGACG AAAGCUAGGG GAGCAAACAG G(AUU-A-GA UAC)-CCUGG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|GA UG-UUGUAUA UU-------- --------(- 1441 -------uuu -----)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- A|AUAUACAG NGUC-GU-NC (UAAC)GCGU 1561 -NUAGUGUCC |C|GCCUGGG AAGUNUGCUN (GCAA)GACN GAAACUCAAA GGAAUUGACG 1621 GNNNNNN-GC ACA------- AGNNNN|NNN NNNNNNNGUU UAAUUCG-(N NNNAACA)CG 1681 AAGAACCUUA CCAGGACUUG ACA----UG| -AA-GAG--A A------AUU UUUU-----( 1741 GAA-A-)GAA AA-AUG---U ---GC----- ----(NUCG- -----)---- -----gc--- 1801 ---------- -----|cucu uACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UNAAGU)CCC GUAACGAGCG CAACCCUUG| UCUUUA-G-U 1921 U--------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --nguuu--- )--------- 2101 |----UCCUA AAGAGACUGC CGAU(UAUAA ----)----- ---------- ---------A 2161 UCGGAGGAAG GUGAGGAUGA CGUN-NA--G UCAUCAUGCC CCUUAAGUUC UGGGCUAC-A 2221 CACGUGCUAC AAUGGG--UA UGACAAAAAG UU----GCUA AUUC------ ---------- 2281 ----(----G UGA-)----- ---------- ----GAAU-G UGCUAAUC-U U-A-AAACAU 2341 AUCCUUAGUU CAGAUUGUAG GC(--UGCAA CUC)GCCUAC AUGAAGGUGG AAUCGCU--- 2401 ---AGUAAU- CGCAGG(UC- -AGCUAU)AC UGCGGUGAAU AC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGCAGCUNG- UUAUACCCGA 2521 AGNUAUn--- nnnnn-nnnn -(-----nnn n------)-n n-nnn-nnn- nn-nnnn-nn 2581 nn-nnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnn(nn nn)nnnnnnn 2641 nnnnnnnnnn nnnnnn--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.P.litt 2717 bp RNA RNA 13-JAN-1989 DEFINITION Pilayella littoralis. ACCESSION No information KEYWORDS No information. SOURCE Pilayella littoralis. ORGANISM Pilayella littoralis. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X14873 was Pylaiella BASE COUNT 437 a 291 c 413 g 364 t 1212 others ORIGIN 1 |--------- AAACUAUCGA GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCUU--U ACACAUGCAA GUCGUACG|A A--------- --------ag u(gu------ 121 ---------- --uaaa---- )acu------ ---------- ------UU-- AGU--GGCGG 181 ACGGGUGAGU AA-CACGUGA GA-AUUUAC- CUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GGGGAAUA ACAG------ ---------- --------UU G(GAAA)UGA 361 -CUGCUAAUG CC-GCAU-AU ---------- ---------- -------C-- --------GU 421 AAUUAUGA(g acaua-)UCA UAACUAU--- ---GAAA--- ---------- ---------- 481 GAA------- ------(--- -------gaa a------)-- -------|-- --UUCGCCUA 541 AAGA-AAA|G -CUUGCGU|- CUGAUUA-GC UAGUUGG-UA -AG(GgUAAA GG)-CU-A-C 601 AA|GGCGACG AU|CAGUAGC UG|GUUU(GA GA)GGACGAC CAGU|CACAC UGG-A(CUGA 661 GACACG)GUC CAGA-C--UA C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCUG-C 721 AAU-GGGC-( -GAAA)---C UgAACAGA|G CAAUACCGCG UGAGGGAAGA AAGCC(---C 781 ACA-G)GG-U U--GUAAACC UC|UUUU-GU CAAGGAAGAA GAu------- (--------) 841 --------UC UGACG|UU-A CUU-GACGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AAG) GACGGGG|GA UGCAAGUGUU AU-CCGGAAU UACUGGGC|G 961 UAAAGCGUUU GUAGGUG|GU UUAGUAAG-| UCU-AUUGUU AAAGCUUGAA GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACU UCAA-AA-GU GUAAU--AGA -AAC-U|ACU -AG-A-CUUG AG-GA|UAGU 1141 A-----GGGG UAAAG|GGAA UUUCCAG-UG GAGCG(GUGA AA)UGCGUAG AGA---UUGG 1201 AAGGACCACC GAU---GGC( GAAG)GC|A| CUUUA-CUG| GGCUA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UUCUGACACU 1321 |AAG-AGACG AAAGCUAGGG UAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCUGUAAA CGAUGAAU-- --AC|UA|GA UG-UUGCGUG U--------- --------(- 1441 -------auc gau--)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|CCAUGCAG UAUC-GUAGC (UAAC)GCGU 1561 -UAAGUAUUC |C|GCCUGGG AACUAUGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGACCC-GC ACA------- AGCGUG|GCA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGUUUG ACA----UU| -AU-GUA--A A------UCU AUUU-----( 1741 GAA-A-)GAA CA-GAG---U G--CC----- ----(CUCG- -----)---- -----GGAA- 1801 ---------- -----|UACA UAAA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUG| UUUCUA-G-U 1921 UGCU------ ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --uuacaaa- )--------- 2101 |AGGAAUCUU GAAG-ACUGC CGGU(UAUAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAUCAUGCC CCUUAUACCC UGGGCUAC-A 2221 CACGUGCUAC AUUGGA--UA AGACAAAAAG UU----GCGA AUUU------ ---------- 2281 ----(----G UGA-)----- ---------- ----AAAU-A AGCUAAUC-U UUA-AACUUA 2341 UUCCUAAGUU CGGAUUGAAG GC(--UGCAA CUC)GCCUUC AUGAAGAUGG AAUCGCU--- 2401 ---AGUAAU- CGCUGG(UC- -AGCUAU)AC AGCGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGUCUUGUA CACACCGCCC GUCACACCAU GGAAGCUGG- UUAUACCCGA 2521 AGUCGUU--- UUCUU-AACC -(--uu-uuu -------)-G G-AGA-GAG- GC-GCCU-AA 2581 GG-UAAGGCU AGUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACG(GG AA)CGUGCGG 2641 CUGGAUCACC UCCUUA--|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.H.akas 2717 bp RNA RNA 11-JAN-191 DEFINITION chloroplast Heterosigma akashiwo subsp. was chloroplast Olisthodiscus luteus. ACCESSION No information KEYWORDS No information. SOURCE chloroplast Heterosigma akashiwo subsp. was chloroplast Olisthodiscus luteus. ORGANISM chloroplast Heterosigma akashiwo. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: M82860,M34370 LOCUS OLICP16S 1537 bp ds-DNA ORG 19-NOV-1991 DEFINITION Chloroplast Olisthodiscus luteus 16S ribosomal RNA (16S rRNA) gene sequence. ACCESSION M82860 M34370 KEYWORDS 16S ribosomal RNA. SOURCE Chloroplast Olisthodiscus luteus (chromosome Chloroplast Olisthodiscus luteus) DNA. ORGANISM Chloroplast Olisthodiscus luteus Eukaryota; Fungi; Chromophycota; Chrysophyceae; Chrysophycidae. REFERENCE 1 (bases 1 to 1537) AUTHORS Delaney,T.P. and Cattolico,R.A. TITLE Sequence of chloroplast 16S ribosomal RNA from Olisthodiscus luteus, as inferred from the gene sequence. Evolutionary implications of discordant rRNA and Rubisco small subunit-based phylogenies JOURNAL Nucleic Acids Res. 19, 6328-6328 (1991) STANDARD simple staff_entry FEATURES Location/Qualifiers rRNA 9..1528 /product="16S ribosomal RNA" /gene="16S rRNA" BASE COUNT 434 a 304 c 421 g 378 t ORIGIN BASE COUNT 434 a 304 c 421 g 378 t 1180 others ORIGIN 1 |-uuuuagga -uaUAAUUGA GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCUU--A ACACAUGCAA GUCGAACG|A G------agg uuu-uuaaag a(uu------ 121 ---------- --uu------ )ucuuaaa-- -aaacug--- ------AA-- AGU--GGCGG 181 ACGGGUGAGU AA-CACGUGA GA-AUCUGC- CUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --AAGGGACA ACAU------ ---------- --------UU G(GAAA)CGA 361 -AUGCUAAUA CC-UUAU-AU ---------- ---------- ---------- --------gc 421 cuauuauaac uuguauaauu aauaggu--- ---gaaa--- ---------- ---------- 481 AG-------- ------(--- -----u-uuu -------)-- -------|-- ---CUGCCUA 541 GAGA-GGA|G -CUCGCGG|- CUGAUUA-GC UAGUUGG-UG -GG(G-UAAU GG)-CCUACC 601 AA|GGCGACG AU|CAGUAAC UG|AUUU(GA GA)GGAUGAU CAGU|CACAC UGGAA(CUGA 661 GACACG)GUC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCUG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACAGA|G CAAUACCGCG UGAGGGAUGA CAGUC(--CU 781 AUG--)GA-U U--GUAAACC UC|UUUU-UU CAGGGAGGAA GU-------- (--------) 841 --------UC UGACG|UU-A CCU-GAAGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGAG|GA UGCAAGUGUU AU-CCGGAAU CACUGGGC|G 961 UAAAGCGUCU GUAGGUG|GU UUAAUGUG-| UCU-GUUGUU AAAUCUUAAG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC UUAA-AC-CA GCAAU--GGA -AAC-U|AUU AUG-A-CUUG AG-UG|UGGU 1141 A-----GAGG UAGAG|GGAA UUUCCAG-UG GAGCG(GUGA AA)UGCGUAG AUA---UUGG 1201 AAAGACCACC AAU---GGC( GAAG)GC|A| CUCUA-CUG| GGCCA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACACU 1321 |GAG-AGACG AAAGCUAGGG GAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCUGUAAA CGAUGGAU-- --AC|UA|GA UG-UCGCAUG ---------- --------(- 1441 ------uauc gacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CAUGCGG UAUU-AUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG AAGUAUGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGUUUG ACA----UA| -GU-ACG--A A------GUU UUUU-----( 1741 GAA-A-)AAA AA-ACC---- A--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGUA CAUA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG UAACCCUUG| UUUUUA-G-U 1921 UGCC---u-- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --uucg---- )--------a 2101 |GGAUAUUUA GAAAGACUGC CGAU(UAUAA ----)----- ---------- ---------A 2161 UCGGAGGAAG GUAAGGACGA CGUC-AA--G UCAUCAUGCC CCUUACACUC UGGGCUAC-A 2221 CACGUGCUAC AUUGGG--UA GAACAAUAAG UU----GCUA AGUU------ ---------- 2281 ----(----G CGA-)----- ---------- ----AACC-A AGCGAAUC-U UC--AAAUCU 2341 ACUCUAAGUU CGGAUUGUAG GC(--UGCAA CUC)GCCUAC AUAAAGAUGG AAUCGCU--- 2401 ---AGUAAU- CGCUGG(UC- -AGCUAC)AC AGCGGUGAAU -C--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGAAGCUGG- UCACACCCAA 2521 AGUCGUU--- AUUCU-AACC -(-----guu u------)-G G-AGG-AAG- GC-GCCU-AA 2581 GG-UAGGAUU GGUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACC(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUUA--|u aaagguuu~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS (2)-Unclas 2717 bp RNA RNA 17-JAN-1994 DEFINITION Unclassified Eukaryotes. ACCESSION No information KEYWORDS No information. SOURCE Unclassified Eukaryotes. ORGANISM Unclassified Eukaryotes. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 2717 others ORIGIN 1 |......... .......... ...-...... .......... .......... .......... 61 .......... .......... .....--.-. .......... ...------- ---------- 121 ---------- ---------- ---------. ......---- -----..... ...--...-- 181 ---------- -------... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......--. 301 ...------- --....---- ---------- ---....... .....---.. ....--.... 361 -......... .-...-..-. ---------- ---------- -------... ..-....... 421 ..------.. ........-- ----...... .......... ..-------- ---------- 481 .......... .-..-....- .......--. .......... .......... ........-. 541 ....-..... -......... .........- -......... .-...-.... .......... 601 ......---- -.-.....|. .......... ...|.....| ...--..... .......... 661 ......-... .......-.. |...-..... -.--....-- -......... .....-..-. 721 .......... -...------ ---------- ---------- ---------- ---------- 781 ---------- ----...... .....----- --........ ..-.....-. |..-----.. 841 .--------- ------.... ......-... .......... .........- .........- 901 --.....-.. ...---..-| ......|... .-........ ..-....... ........|. 961 .......... .......... ........-. |..-...... .......... .......... 1021 .......... .......... .......... .......... .......... ....------ 1081 ---...-..- .......-.| .....---.. ......-... -..-.----. .|-....... 1141 ..----.... .......... ....------ -......-.. ...------- ---------- 1201 ---------- ---------- |--------- ---------- ...-.--... .......... 1261 .......... .......... .......... .........- ---------- ....-..... 1321 -....|.... .......... .......... .....-.... .-------.. .|.--..... 1381 ...-...-.. ........-- --..-..... ..-..-.... .-.....--- ---------- 1441 --------.. ..---..... ....--.--. ....----.- -..--..--- ---------- 1501 ---------- ---------- ---------- --....---- --------.. .......... 1561 -....|.... ..|..-.... .......... .....-.... .......... .......... 1621 ......-... .......... ......-... .......... .......... .....----- 1681 -.-------. .......... ....---..| ...-...... .------... ......---. 1741 ...-...... ..-....... .......--- ----...--- ------.--- -----..... 1801 ..-------- -----..... .--.|..... ..---..... ..-------- --........ 1861 .....--.-- .--....... ...------- ---------. .-........ ......-... 1921 ....-..... .......-.- -......... .........- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------. .......--- ...--..... 2101 .......... ....|||... .......... ----..---- ---....... ...------. 2161 .......... .......... .......--. .......... .......... ........-. 2221 .......... .......-.. .......... ...---.... ....------ ---------- 2281 ----.----. ...-...... .......... .......... ........-. .......... 2341 .......... .......... ...--..... .......... .......... .......--- 2401 ---....... .......... -......... .......... ...-....-- ---------- 2461 -------... .......... .......... .......... .......... .......... 2521 .......--- -......... .......... .......... .-........ .......-.. 2581 ..-....... .......... .......... .......... .......... .......... 2641 .......... .......-.. .......... .......... .......... .......... 2701 .......... ......| // LOCUS chl.OM283 2717 bp RNA RNA 22-DEC-1997 DEFINITION Unidentified cryptomonad.; . ACCESSION U70724 KEYWORDS . SOURCE Unidentified cryptomonad. ORGANISM Unidentified cryptomonad. REFERENCE 1 (bases 1 to 1482) AUTHORS Rappe,M.S., Kemp,P.F. and Giovannoni,S.J. TITLE genes cloned from the continental shelf off Cape Hatteras, North Carolina Phylogenetic diversity of marine coastal picoplankton 16S DNA JOURNAL Limnol. Oceanog. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 1482) AUTHORS Rappe,M.S., Kemp,P.F. and Giovannoni,S.J. TITLE Direct Submission JOURNAL Submitted (13-SEP-1996) Dept. of Microbiology, Oregon State University, Nash Hall 220, Corvallis, OR 97331-3804, USA STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U70724 BASE COUNT 395 a 321 c 437 g 329 t 1235 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~A GAG-UU(U-G A)UCAU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCUU--A ACACAUGCAA GUCGUACG|A GA-------- --------au u(uu------ 121 ---------- --u------- )aau------ ---------- ------UCU- AGU--GGCGG 181 ACGGGUGAGU AA-CACGUGA GA-AUCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GAAGGAUA ACAG------ ---------- --------CU G(GAAA)CGG 361 -UUGCUAAUA CU-UCAU-AU ---------- ---------- ---------- --------GC 421 C-------(G CAA---)--- ----GGU--- ---GAAA--- ---------- ---------- 481 GAA------- ------(--- -----u-gua -------)-- -------|-- --UUCGCCUA 541 AGGA-GGA|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-AG -AG(G-UAAU GG)-CUCACC 601 AA|GGCGACG AU|CAGUAGC UG|GUUU(GA GA)GGACGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUACCGCG UGAGGGAUGA CAGCC(---U 781 GUG--)GG-U U--GUAAACC UC|UUUU-CU CAAGGAAGAA ---------- (--guuc--) 841 ---------- UGACG|GU-A CUU-GAGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACAGAG|GA UGCAAGCGUU AU-CCGGAAU CACUGGGC|A 961 UAAAGCGUCU GUAGGUG|GU UCGGUAAG-| UCU-GCUGUU AAAGACUAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---CUA)ACC CUAG-AA-AA GCAGU--GGA -AAC-U|GCC -AA-A-CUUG AG-UG|UGGU 1141 A-----GAGG UAGAG|GGAA UUCCUAG-UG UAGCG(GUGA AA)UGCGUAG AUA---UUAG 1201 GAAGAACACC AAU---GGC( GAAG)GC|A| CUCUA-CUG| GGCCA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- AACUGACACU 1321 |GAG-AGACG ACAGCUAGGG GAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|GA UG-UUGCACG ---------- --------(- 1441 ------uauu aacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UAUC-GUAGC (UAAG)GCGU 1561 -UAAGUAUCC |C|GCCUGGG AAGUACGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GUAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -UC-ACG--G A------UCU UUUU-----( 1741 GAA-A-)GGA AA-GAG---U G--CC----- ----(uucg- -----)---- -----GGAA- 1801 ---------- -----|CGUG AACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG UAACCCUUG| UUUUUA-G-U 1921 UGCC-auca- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --uuuagu-- )-------ug 2101 |GGCACUUUA AAAAGACUGC CGGU(GAUAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GUGAGGACGA CGUC-AA--G UCAGCAUGCC CCUUACGCCC UGGGCUAC-A 2221 CACGUACUAC AAUGGU--CG AGACAAAGAG CU----GCUA GCCU------ ---------- 2281 ----(----G CGA-)----- ---------- ----AGGU-A CGCUAAUC-U CAU-AAACUC 2341 GGUCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGGUGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCUAU)AC GGCGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGAAGCUAG- CCAUACCCAA 2521 AGUCGUU--- ACCUU-AACC -(-----uuu u------)-G G-AGG-GGG- GC-GCCU-AA 2581 GG-UAAGGUU AGUGACUGGG GUGAAGUCCU AACAAGGUAG CCCUACU(GG AA)GGUGUGG 2641 UUGGAUCACC UCCUU---|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.OM270 2717 bp RNA RNA 22-DEC-1997 DEFINITION Unidentified eukaryote.; . ACCESSION U70723 KEYWORDS . SOURCE Unidentified eukaryote. ORGANISM Unidentified eukaryote. REFERENCE 1 (bases 1 to 1475) AUTHORS Rappe,M.S., Kemp,P.F. and Giovannoni,S.J. TITLE Phylogenetic diversity of marine coastal picoplankton 16S DNA genes cloned from the continental shelf off Cape Hatteras, North Carolina JOURNAL Limnol. Oceanog. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 1475) AUTHORS Rappe,M.S., Kemp,P.F. and Giovannoni,S.J. TITLE Direct Submission JOURNAL Submitted (13-SEP-1996) Dept. of Microbiology, Oregon State University, Nash Hall 220, Corvallis, OR 97331-3804, USA STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U70723 BASE COUNT 398 a 313 c 439 g 325 t 1242 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~A GAG-UU(U-G A)UCAU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCCU--A ACACAUGCAA GUCGUACG|G Aa-------- -------guu u(uu------ 121 ---------- --u------- )aaac----- ---------- ------UUU- AGU--GGCAG 181 ACGGGUGAGU AA-CACGUGA GA-AUCUAC- CUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GGAGGACA ACAU------ ---------- --------UU G(GAAA)CGA 361 -AUGCUAAUA CU-CCAU-AU ---------- ---------- ---------- --------GC 421 C-------(G CAA---)--- ----GGU--- ---GAAA--- ---------- ---------- 481 UAC------- ------(--- -------gca a------)-- -------|-- --G-UGCCUG 541 AAGA-CGA|G -CUCGCGC|- CUGAUUA-GC UAGUUGG-UG -GG(G-UAAA GG)-CCCACC 601 AA|GGCGACG AU|CAGUAGC UG|GUUU(GA GA)GAACGAU CAGC|CACAC UGGAA(CUGA 661 GACACG)GUC CAGA-C--UC C(UG-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUACCGCG UGAGGGAUUA AGGCC(---U 781 GUG--)GG-U U--GUAAACC UC|UUUU-CU CAAGGAAGAA ---------- (---uca-a) 841 ---------- UGACG|GU-A CUU-GAGGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGGG|GA UGCAAGCGUU AU-CCGGAAU UAUUGGGC|G 961 UAAAGGGUCU GUAGGUG|GC UAGAUAAG-| UCU-GUUGUU AAAGACUGGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CCAG-GA-AA GCAAU--GGA -AAC-U|GUU -AA-G-CUAG AG-UG|UGGU 1141 A-----GAGG UAGAG|GGAA UUCCUAG-UG UAGCG(GUGA AA)UGCGUAG AUA---UUAG 1201 GAAGAACACC GGU---GGC( GAAG)GC|G| CUCUA-CUG| GGCCA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- AACUGACACU 1321 |CAG-AGACG AAAGCUAGGG UAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|GA UG-UUGcgua ---------- --------(- 1441 -------acu uga--)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|UUAUGCAG UGUU-UUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACACUC (GCAA)GGGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUUG-(A UGCAACG)CG 1681 AAGAACCUUA CCAAGGCUUG ACA----UG| -UC-ACG--A A------UCU UCUU-----( 1741 GAG-A-)GGG AA-GAG---U G--CC----- ----(uucg- -----)---- -----GGAA- 1801 ---------- -----|CGUG AACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUG| UCUUUA-G-U 1921 UACC-AUCA- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --uuuagu-- )-------UG 2101 |GGGACUCUA GAGAGACUGC CGGU(GACAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GUGAGGACGA CGUC-AA--G UCAGCAUGCC CCUUAUGCCU UGGGCUAC-A 2221 CACGUGCUAC AAUGGC--UA AGACAAagag ca----gcaa gcuu------ ---------- 2281 ----(----g caa-)----- ---------- ----aagu-u agcgaauc-u cAU-AAACUU 2341 AGUCUAAGUU CGGAUUGUAG GC(--UGCAA CUC)GCCUAC AUGAAGGCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCAAU)AC GGCGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGGAGUUGG- CUACGCCCGA 2521 AGUCGUU--- ACcuu-aucu -(-----ggg -------)-g g-a------- -c-gccu-aa 2581 gg-cagagcu gauaacuaGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 UUGGAUCACU CCCUU---|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.OM164 2717 bp RNA RNA 22-DEC-1997 DEFINITION Unidentified eukaryote.; . ACCESSION U70721 KEYWORDS . SOURCE Unidentified eukaryote. ORGANISM Unidentified eukaryote. REFERENCE 1 (bases 1 to 1477) AUTHORS Rappe,M.S., Kemp,P.F. and Giovannoni,S.J. TITLE Phylogenetic diversity of marine coastal picoplankton 16S DNA genes cloned from the continental shelf off Cape Hatteras, North Carolina JOURNAL Limnol. Oceanog. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 1477) AUTHORS Rappe,M.S., Kemp,P.F. and Giovannoni,S.J. TITLE Direct Submission JOURNAL Submitted (13-SEP-1996) Dept. of Microbiology, Oregon State University, Nash Hall 220, Corvallis, OR 97331-3804, USA STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U70721 BASE COUNT 405 a 308 c 421 g 343 t 1240 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~A GAG-UU(U-G A)UCAU|GGC UCAGGAUGAA CGC-UAUCGG 61 UAUG-uu--A ACACAUGCAA GUCGAACG|A GA-------- --------gu u(uu------ 121 ---------- --u------- )aac------ ---------- ------UCU- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUGA GA-AUUUGC- CCCU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GGGAAAUA ACAU------ ---------- --------UG G(GAAA)CCG 361 -GUGCUAAAG UC-CCAU-AU ---------- ---------- ---------- --------AC 421 C-------(U UUU---)--- ----GGU--- ---GAAA--- ---------- ---------c 481 AGG------- ------(--- ---uca-aaa a------)-- -------|-- --CCUGCCUA 541 GGGA-GAA|G -CUCGCGC|- CUGAUUA-GC UAGUUGG-UG -GG(G-UAAA GG)-CCUACC 601 AA|GGUGACG AU|CAGUAGU UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGAA(CUGA 661 GACACG)GUC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGAGG-A AUUUUCCG-C 721 AAU-GGGC-( -GCAA)-GCC U-GACGGA|G CAAUACCGCG UGAGGGAUGA CGGCC(---U 781 UCG--)GG-U U--GUAAACC UC|UUUU-UU UCAGGGAGGA A--------- (--guuu-c) 841 ---------- UGACG|UGuA CCU-GAAGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACGGAG|GA UGCAAGUGUU AU-CCGAAAU UAUUGGGC|G 961 UAAAGAGUCU GUAGGUG|GC UUGACAAG-| UCG-GUUGUU AAAUAUCAUU GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACU UUGA-AA-CU GCAUC--CGA -AAC-U|GUC -AG-G-CUCG AG-UA|GAGU 1141 C-----GAAG UAGAA|GGAA UUUCCAG-UG AAGCG(GUGA AA)UGCGUAG AUA---UUGG 1201 AAGGAACACC AAU---GGC( GAAA)GC|A| UUCUA-CUA| GGCUC--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACACU 1321 |GAG-AGACG AAAGCUAGGG UAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCGGUAAA CGAUGGAU-- --AC|UA|AA CA-UUGCGUG u--------- --------(- 1441 -------auc gaau-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|CCACGUGG UGUU-AUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGCUC (GCAA)GGGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUUG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGUUUG ACA----UA| -GU-GUU--A A------UUC UUU------( 1741 GAA-A-)-AA AG-AAG---U G---C----- ----(uucg- -----)---- -----gcag- 1801 ---------- -----|acac au-A|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UUUUUA-G-U 1921 U--------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --gcaaga-- )--------- 2101 |---AAUCUA AAAaGACUAU CGGU(UAUAC ----)----- ---------- ---------A 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUAUACCC UGGGCUAC-A 2221 CACGUGCUAC AUUGGG-uau gGACAAUGAG AU----GC-c aagu------ ---------- 2281 ----(----c gug-)----- ---------- ----agaccg AGCUAAUC-U AA--AAACCU 2341 ACUCUAAGUU CGGAUUGgAG GC(--UGCAA CUC)GCCUCC AUGAAGUUGG AAUCGCU--- 2401 ---AGUAAU- CGCUGG(UC- -AGCUAC)AC AGCGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGAAGCCGG- UUAUGCCCAA 2521 AGUCGUU--- GUACC-aacc a(--uu-uau u------)uG G-AGG-AAG- GC-GUCU-AA 2581 GG-UAGAGCU AGUGACUAGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGUGG 2641 CUGGAUCACC UCCUU---|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.OM153 2717 bp RNA RNA 22-DEC-1997 DEFINITION Unidentified haptophyte.; . ACCESSION U70720 KEYWORDS . SOURCE Unidentified haptophyte. ORGANISM Unidentified haptophyte. REFERENCE 1 (bases 1 to 1126) AUTHORS Rappe,M.S., Kemp,P.F. and Giovannoni,S.J. TITLE North Carolina Phylogenetic diversity of marine coastal picoplankton 16S DNA genes cloned from the continental shelf off Cape Hatteras, JOURNAL Limnol. Oceanog. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 1126) AUTHORS Rappe,M.S., Kemp,P.F. and Giovannoni,S.J. TITLE Direct Submission JOURNAL Submitted (13-SEP-1996) Dept. of Microbiology, Oregon State University, Nash Hall 220, Corvallis, OR 97331-3804, USA STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U70720 BASE COUNT 299 a 246 c 318 g 261 t 1593 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~N GAG-UU(U-G A)UCAU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCUU--A ACACAUGCAA GUCGAACG|A AA-------- --------gu u(uu------ 121 ---------- --u------- )aac------ ---------- ------UUU- AGU--GGCGA 181 ACGGGUGCGU AA-UACGUGA GA-AUCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GGAGAAUA ACUU------ ---------- --------CU G(GAAA)CGG 361 -UUGCUAAGU CU-CCAU-AU ---------- ---------- ---------- --------GC 421 C-------(G AGA---)--- ----GGU--- ---GAAAU-- ---------- ---------- 481 AGU------- ------(--- -------uua g------)-- -------|-- --ACUGCCUA 541 GGGA-UGA|G -CUCACGC|- CUGAUUA-GC UUGUUGG-UG -AG(G-UAAU GG)-CUCACC 601 AA|GGCCACG AU|CAGUAGC UG|GUUU(GA GA)GAACGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UC-CG)GG -A--GGCAG- CAGUGAGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUACCGCG UGAGGGAUGA AGGAU(---U 781 UUG--)GU-C U--GUAAACC UC|UUUU-CU CAAGAAAGAA ---------- (--guuc--) 841 ---------- UGACG|GU-A CUU-GAGGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGGU|GA UGCAAGCGUU AU-CCGGAAU CAUUGGGC|G 961 UAAAGCGCCU GUAGGUU|GU UUAAUAAG-| UCU-GUUGUU AAAGACCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CUGG-GA-AA GCAAU--GGA -AAC-U|GCU -AG-A-CUUG AG-UA|UGAU 1141 A-----GGGG UAGAG|GGAA UUUCUAG-UG UAGCG(GUGA AA)UGCGUAG AUA---UUAG 1201 AAAGAACACC GGU---GGC( GAAN)GC|G| CUCUA-CUG| GAUCA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |CAG-AGGCG AAAGCUAGGG UAGCAAAAGG G(AUU-A-GA UAC)-CCCUG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|CA UG-UUGC~~~ ~~~~~~~~~~ ~~~~~~~~(~ 1441 ~~~~~~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ (~~~~)~~~~ 1561 ~~~~~~~~~~ |~|~~~~~~~ ~~~~~~~~~~ (~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1741 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~|~|~~~ ~~~~~~~~~| ~~~|~~~~~~ ~|~~~~~~~~ 1861 |~~~(~~~~) ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ )~~~~~~~~~ 2101 |~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~gu--AA--G UCAGCAUCCC CCUUAUGUCC UUGGCCAC-A 2221 CACGUCCUAC AAUGGC--Ua agACAAAGAG UU----ccga acuu------ ---------- 2281 ----(----c cGA-)----- ---------- ----AAGU-C AGCUAAUC-U CAU-AAACUU 2341 AGCCCAAGUU CGGAUUGUAG GC(--UGCAA CUC)GCCUGC AUGAAGUCGG AAUCGCU--- 2401 ---AGUAAU- CGCUGG(UC- -AGCCAU)AC AGCGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGGAGCUGG- UCAUGCCCGA 2521 AACCGUU--- UGCUU-AACC -(-----uuu c------)-G G-AGA-GCG- GC-GUCU-AA 2581 GG-UAGGGUU AGUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGUGG 2641 CUGGAUCACC UCCUU---|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.OM125 2717 bp RNA RNA 22-DEC-1997 DEFINITION Unidentified haptophyte.; . ACCESSION U70719 KEYWORDS . SOURCE Unidentified haptophyte. ORGANISM Unidentified haptophyte. REFERENCE 1 (bases 1 to 1085) AUTHORS Rappe,M.S., Kemp,P.F. and Giovannoni,S.J. TITLE genes cloned from the continental shelf off Cape Hatteras, North Carolina Phylogenetic diversity of marine coastal picoplankton 16S DNA JOURNAL Limnol. Oceanog. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 1085) AUTHORS Rappe,M.S., Kemp,P.F. and Giovannoni,S.J. TITLE Direct Submission JOURNAL Submitted (13-SEP-1996) Dept. of Microbiology, Oregon State University, Nash Hall 220, Corvallis, OR 97331-3804, USA STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U70719 BASE COUNT 302 a 223 c 308 g 248 t 1636 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~A GAG-UU(U-G A)UCAU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCUU--A ACACAUGCAA GUCGAACG|A AA-------- --------gu u(uu------ 121 ---------- --u------- )aac------ ---------- ------UUU- AGU--GGCGA 181 ACGGGUGAGU AA-UACGUGA GA-AUCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GAAGAAUA ACUG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CU-UCAU-AU ---------- ---------- ---------- --------GC 421 C-------(G AGA---)--- ----GGU--- ---AAAAA-- ---------- ---------- 481 AGU------- ------(--- -------uuu a------)-- -------|-- --ACUGCCUA 541 AGGA-UGA|G -CUCACGC|- CUGAUUA-GC UUGUUGG-UA -AG(G-UAAU GG)-CUUACC 601 AA|GGCCACG AU|CAGUAGC UG|GUUU(GA GA)GAACGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UC-CG)GG -A--GGCAG- CAGUGAGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUACCGCG UGAGGGAUGA AGGAU(---U 781 UUG--)GU-C U--GUAAACC UC|UUUU-CU CAAGAAAGAA ---------- (--guuc--) 841 ---------- UGACG|GU-A CUU-GAGGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGGG|GA UGCAAGCGUU AU-CCGGAAU CAUUGGGC|G 961 UAAAGCGCCU GUAGGUU|GU UUAUUAAG-| UCU-GUUGUU AAAGCCUAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CUAG-AG-AA GCAGU--GGA -AAC-U|GGU -AG-A-CUAG AG-UA|UGGC 1141 A-----GGGG UAGAG|GGAA UUUCUAG-UG UAGCG(GUGA AA)UGCGUAG AUA---UUAG 1201 AAAGAACACC AGC---GGC( GAAA)GC|G| CUCUA-CUG| GACCA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |CAG-AGGCG AAAGCUAGGG UAGCAAAAGG G(AUU-A-GA UAC)-CCCUG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|GA UG-UUGUGUA ---------- --------(- 1441 ------augg c~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ (~~~~)~~~~ 1561 ~~~~~~~~~~ |~|~~~~~~~ ~~~~~~~~~~ (~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~(~ ~~~~~~~)~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( 1741 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~|~|~~~ ~~~~~~~~~| ~~~|~~~~~~ ~|~~~~~~~~ 1861 |~~~(~~~~) ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ )~~~~~~~~~ 2101 |~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~ua agacaaagag uc----gcga guuu------ ---------- 2281 ----(---cG UGA-)----- ---------- ----GAAC-C AGCUAAUC-U CGU-AAACnU 2341 AGCCCAAGUU CAGAUUGUAG GC(--UGCAA CUC)NCCUAC AUGAAGNUGG AAUCGCU--- 2401 ---AGUAAU- CGCUGG(UC- -AGCUAU)AC AGCGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGGAGCUGG- UCAUACCCAA 2521 AGUCGUU--- UGCUU-AACC -(-----gun u------)-G G-AGA-GCU- GC-GCCU-AA 2581 GG-UAGGGCU AGUGACUAGG GUGAAGUCGU AACAAGGUAA CCGUACU(GG AA)GGUGUGG 2641 AUGGAUCACC UCCUU---|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.OM081 2717 bp RNA RNA 22-DEC-1997 DEFINITION Unidentified eukaryote.; . ACCESSION U70717 KEYWORDS . SOURCE Unidentified eukaryote. ORGANISM Unidentified eukaryote. REFERENCE 1 (bases 1 to 1463) AUTHORS Rappe,M.S., Kemp,P.F. and Giovannoni,S.J. TITLE North Carolina Phylogenetic diversity of marine coastal picoplankton 16S DNA genes cloned from the continental shelf off Cape Hatteras, JOURNAL Limnol. Oceanog. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 1463) AUTHORS Rappe,M.S., Kemp,P.F. and Giovannoni,S.J. TITLE Direct Submission JOURNAL Submitted (13-SEP-1996) Dept. of Microbiology, Oregon State University, Nash Hall 220, Corvallis, OR 97331-3804, USA STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U70717 BASE COUNT 417 a 291 c 401 g 354 t 1254 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~A GAG-UU(U-G A)UCAU|GGC UCAGGAUGAA CGC-UAGCGG 61 UAUGCUU--U ACACAUGCAA GUCGUACG|- ga-------- --------aa a(ga------ 121 ---------- --a------- )auu------ ---------- ------uuu- AGU--GGCGA 181 ACGGGUGAGU AA-CACGUGA GA-AUCUAC- CUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --AGAGGAUA ACAU------ ---------- --------UU A(GAAA)CAU 361 -UUGCUAAUA CU-CUAU-AU ---------- ---------- ---------- --------GC 421 U-------(U UAC---)--- ----GGU--- ---GAAA--- ---------- ---------- 481 GAA------- ------(--- -------uuu a------)-- -------|-- --UUCGCCUA 541 AAGA-GGA|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UA -GG(G-UAAA AG)-CCUACC 601 AA|GGCGACG AU|CAGUAGU UG|GUCU(GA GA)GGACGAC CAGC|CACAU UGGAA(CUGA 661 GACACG)GUC CAGA-C--UC U(UA-CG)GG -A--GGCAG- CAGUGAGG-A AUUUUCUG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACAGA|G CAAUACCGCG UGAGGGAUGA CUGCC(---U 781 ACG--)GG-U U--GUAAACC UC|UUUU-CU CAAGGAGGAA G--------- (---AUC--) 841 ---------- UGACG|UU-A CUU-GAGGAA -UAAGCAUC| GGCU-AACC- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACAGGG|GA UGCAAGUGUU AU-CCGGAAU UAUUGGGC|G 961 UAAAGCGUCU GUAGGUU|GA UAUUUAAG-| UCU-UUUGUU AAAACUUUGA GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACU CAAA-AA-CA GCAAA--AGA -AAC-U|AUU -UA-U-CUUG AG-UA|UGGU 1141 A-----GAGG UAAAG|GGAA UUUCCAG-UG GAGCG(GUGA AA)UGCGUAG AUA---UUGG 1201 AAAGAACACC AAC---AGC( GAAG)GC|A| CUUUA-CUG| GGCCA--G-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACACU 1321 |GAG-AGACG AAAGCUAGGG UAGCAAACGG G(AUU-A-GA UAC)-CCCGG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|GA UG-UUGcgua ---------- --------(- 1441 ------cuuu uauag)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-UAUGCAG UGUC-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG AAGUAUGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACA)CG 1681 AAGAACCUUA CCAGGACUUG ACA----UG| -A-agag--a ag------uu uuuu-----( 1741 GAG-A-)aaa aa-a-----u g--ug----- -----cuac- ---------- -----ggcc- 1801 ---------- ------ucu- UACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUG| UUUCUA-G-U 1921 U--------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( ---gaau--- )--------- 2101 |----CUCUA GAAAGACUGC CGAU(uauaa ----)----- ---------- ---------A 2161 UCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAUCAUGCC CCUUACGUCC UGGGCUAC-A 2221 CACGUGCUAC AAUGGA--UG UGACAAAAAG UU----GCAA CUUC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGAG-A AGCUAAUC-U -AU-AAACAC 2341 AUCCCUAGUU CAGAUUGUAG GC(--UGCAA CUC)GCCUAC AUGAAGGUGG AAUCGCU--- 2401 ---AGUAAU- CGCAGG(UC- -AGCUAU)AC UGCGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGGAGCUGG- UUAUGCCCGA 2521 AGCUAUU--- AUCCU-AACC -(-----uuu u------)-G G-AGG-GAG- GU-AUCG-AA 2581 GG-UAGAAUU GGUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUU---|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.OM039 2717 bp RNA RNA 22-DEC-1997 DEFINITION Unidentified prasinophyte.; . ACCESSION U70716 KEYWORDS . SOURCE Unidentified prasinophyte. ORGANISM Unidentified prasinophyte. REFERENCE 1 (bases 1 to 698) AUTHORS Rappe,M.S., Kemp,P.F. and Giovannoni,S.J. TITLE North Carolina Phylogenetic diversity of marine coastal picoplankton 16S DNA genes cloned from the continental shelf off Cape Hatteras, JOURNAL Limnol. Oceanog. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 698) AUTHORS Rappe,M.S., Kemp,P.F. and Giovannoni,S.J. TITLE Direct Submission JOURNAL Submitted (13-SEP-1996) Dept. of Microbiology, Oregon State University, Nash Hall 220, Corvallis, OR 97331-3804, USA STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U70716 BASE COUNT 193 a 138 c 216 g 150 t 2020 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~A GAG-UU(U-G A)UCCU|GGC UCAGAAGGAA CGC-UGGCAG 61 CGUGCAU--A ACACAUGCAA GUCGAACG|A ug-------- --a-agcauu c(uu------ 121 ---------- --cg------ )gaaugug-- -g-------- ------aag- AGU--GGCGA 181 ACGGGUGAGG AA-CACGUAA GA-AUCUGC- CCCU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------C 301 GGU------- --CGGGGACA ACUU------ ---------- --------UU G(GAAA)CGA 361 -AAGCUAAUA CC-CGAU-AC ---------- ---------- ---------- --------GC 421 U-------(G UGG---)--- ----AGu--- ---gaaa--- ---------- ---------- 481 GA-------- ------(--- ----au-u-- -------)-- -------|-- ---UCGCCGA 541 GGGA-UGA|U -CUUGCGU|- CUGAUUA-GC UAGUUGG-UG -CG(G-UAAU GG)-CGCACC 601 AA|GGCGACG AU|CAGUAGC UG|GUCU(GA GA)GGAUGAA CAGC|CACAU UGGAA(CUGA 661 GACACG)GUC CAAA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGAC-( -GAAA)-GUC U-GACGGA|G CGACGCUGCG UGAAGGAUGA CGGCC(---U 781 GCG--)GG-U U--GUAAACU UC|UUUU-CU CGAAGAAGAA ---------- (--gcuc--) 841 ---------- UGACG|GU-A UUC-GAGGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACGGAG|GA UGCAAGUGUU AU-UCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGCU|GU AUAGAAAG-| UCU-UUUGUU AAAUACCUCG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC GAUA-UC-CA GCAAA--GGA -AAC-U|UCU -AU-A-CUUG AG-GU|AAGU 1141 A-----GAGG UACAG|GGAA UUCCCGG-UG GAGCG(GUGA AA)UGCGUAG AUA---UCGG 1201 GAGGAACANC AAU-auGGC( GAAG)GC|A| CUGUA-CUG| GGCUU--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- a~~~~~~~~~ 1321 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~-~~ ~~~)-~~~~~ ~~~-|~~-~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(- 1441 ------~~~~ ~~~~-)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- 1501 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ (~~~~)~~~~ 1561 ~~~~~~~~~~ |~|~~~~~~~ ~~~~~~~~~~ (~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~-~~ ~~~------- ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~-(~ ~~~~~~~)~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~--~ ~~----~~~~ ~~~~-----( 1741 ~~~~~~)~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~(~~~~~ -----)~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~|~|~~~ ~~~~~~~~~| ~~~|~~~~~~ ~|~~~~~~~~ 1861 |~~~(~~~~) ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ )~~~~--~~~ 2101 |~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- 2281 ~--~(--~~~ ~~~-)~~~~~ ~~~~~~~~-- ----~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~-~~~ ~~~~~~~)~~ ~~~~~-~~~~ ~~-~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.OM005 2717 bp RNA RNA 22-DEC-1997 DEFINITION Unidentified prasinophyte.; . ACCESSION U70715 KEYWORDS . SOURCE Unidentified prasinophyte. ORGANISM Unidentified prasinophyte. REFERENCE 1 (bases 1 to 1485) AUTHORS Rappe,M.S., Kemp,P.F. and Giovannoni,S.J. TITLE North Carolina Phylogenetic diversity of marine coastal picoplankton 16S DNA genes cloned from the continental shelf off Cape Hatteras, JOURNAL Limnol. Oceanog. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 1485) AUTHORS Rappe,M.S., Kemp,P.F. and Giovannoni,S.J. TITLE Direct Submission JOURNAL Submitted (13-SEP-1996) Dept. of Microbiology, Oregon State University, Nash Hall 220, Corvallis, OR 97331-3804, USA STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U70715 BASE COUNT 415 a 304 c 428 g 338 t 1232 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~A GAG-UU(U-G A)UCAU|GGC UCAGAAGGAA CGC-UGGCAG 61 CGUGCAU--A ACACAUGCAA GUCGAACG|C GA-------- --a-agaauc c(uu------ 121 ---------- --cg------ )ggauuug-- -g-------- ------acg- AGU--GGCGA 181 ACGGGUGAGG AA-CACGUAA GA-AUCU-A- CCUUu----- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------C 301 GGU------- --UGGGGAUA ACUU------ ---------- --------CU G(GAAA)CGG 361 -GAGCUAAUA CC-CAAU-AU ---------- ---------- ---------- --------GC 421 U-------(G UGG---)--- ----AGU--- ---GAAA--- ---------- ---------- 481 GA-------- ------(--- ----Au-u-- -------)-- -------|-- ---UCGCCGA 541 GAGA-CGA|u -cuuGCGU|- CUGAUUA-GC UUGUUGG-GG -UG(G-UAAU GG)-CACACC 601 AA|GGCGACG AU|CAGUAGC UG|GUCU(GA GA)GGAUGGA CAGC|CACAU UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGAC-( -GAAA)-GUC U-GACGGA|G CGACGCUGCG UGAAGGAUGA AGGCC(---C 781 GUG--)GG-U U--GUAAACU UC|UUUU-CU CGAAGAAGAa ---------- (-aaaaa--) 841 ---------- ugACG|GU-A UUC-GAGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGAG|GA UGCAAGUGUU AU-UCGGAAU GAUUGGGC|G 961 UAAAGAGUCU GUAGGCG|GU UUAGAAAG-| UCU-UUUGUG AAAUACUUCA GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACU GAGG-CU-CC GCAAA--AGA -AAC-U|UCU -AG-A-CUUG AG-GA|AAGU 1141 A-----GAGG UACAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AUA---UCGG 1201 AAGGAACACC AAU-auGGC( GAAG)GC|A| CUGUA-CUG| GGCUU--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UCCUGACGCU 1321 |CAG-AGACG AAAGCUGAAG GAGUGAUUAG G(AUU-A-GA UAC)-CCUAG UAA-|UU-UC 1381 A-GCCGUAAA CGAUGAAA-- --AC|UC|AC UG-UCGAGC- ---------- --------(- 1441 ------caau auau-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-GGAGCGG UGGU-CAAGC (UAAC)GCGU 1561 -GAAGUUUUC |C|GCCUGGG GAUUACGCUU (GCAA)AAGU GAAACUCAAA GGAAUUGACG 1621 GGGACCC-GC ACA------- AGCGGU|GGA GUAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAAAACCUUA CCAGGGUUUG A-aauaauu| -uc-aaa--a --------cu ucuu-----( 1741 GAA-A-)gag aa-g-c---c u--cc----- ----(uucg- -----)---- -----gga-- 1801 ---------- -----|UGGA AUUA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUU(GUGA) AAUGUCAAG( UUAAGU)CUU GUAACGAGCG CAACCCAUG| UCUCUU-G-U 1921 UGC----ug- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --uuua---- )-------ca 2101 |GUG-CUUAA GAGAAACUGC CGA-(ucaac ----)----- ---------- ---------A 2161 UCGGAGGAAG GUGUGGAUGA UGUC-AA--G UCAGCAUGCC CCUUACAUCC UGGGCUAC-A 2221 CACGUACUAC AAUGGU--CG AGACAAAGGG UC----GCUA ACCU------ ---------- 2281 ----(----G CGA-)----- ---------- ----AGGU-A UGCCAAUC-U CAU-AAACUC 2341 GAUCUCAGUU CGGAUUGUAC UC(--UGCAA CUC)GAGUAC AUGAAGGUGG AAUCGCU--- 2401 ---AGUAAU- CGCUGG(UC- -AGC-AU)AC AGCGGUGAAU AC--GUU--- ---------- 2461 -------CCC GGGUCUUGUA CACACUGCCC GUCACACCAU GGAAGUCGA- CCCUUCCCUA 2521 AGUCGUU--- ACUCG-AACC -(-----ugu a--aa--)-G G-ACG-AGG- AC-GCCG-AA 2581 GG-CAGAGUU GGUGACUAGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUU---|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.OM111 2717 bp RNA RNA 22-DEC-1997 DEFINITION Unidentified prasinophyte.; . ACCESSION U70718 KEYWORDS . SOURCE Unidentified prasinophyte. ORGANISM Unidentified prasinophyte. REFERENCE 1 (bases 1 to 402) AUTHORS Rappe,M.S., Kemp,P.F. and Giovannoni,S.J. TITLE Phylogenetic diversity of marine coastal picoplankton 16S DNA genes cloned from the continental shelf off Cape Hatteras, North Carolina JOURNAL Limnol. Oceanog. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 402) AUTHORS Rappe,M.S., Kemp,P.F. and Giovannoni,S.J. TITLE Direct Submission JOURNAL Submitted (13-SEP-1996) Dept. of Microbiology, Oregon State University, Nash Hall 220, Corvallis, OR 97331-3804, USA STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U70718 BASE COUNT 108 a 78 c 131 g 83 t 2317 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~A GAG-UU(U-G A)UCAU|GGC UCAGAAGGAA CGC-UGGCAG 61 CGUGCAU--A ACACAUGCAA GUCGAACG|C GA-------- --a-agaauc c(uu------ 121 ---------- --cg------ )ggauuug-- -g-------- ------acg- AGU--GGCGA 181 ACGGGUGAGG AA-CACGUAA GA-AUCU-A- CCUUu----- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------C 301 GGU------- --UGGGGAUA ACUU------ ---------- --------CU G(GAAA)CGG 361 -GAGCUAAUA CC-CAAU-AU ---------- ---------- ---------- --------GC 421 U-------(G UGG---)--- ----AGU--- ---GAAA--- ---------- ---------- 481 GA-------- ------(--- ----Au-u-- -------)-- -------|-- ---UCGCCGA 541 GAGA-CGA|u -cuuGCGU|- CUGAUUA-GC UUGUUGG-GG -UG(G-UAAU UG)-CACACC 601 AA|GGCGACG AU|AAGUAGC UG|GUCU(GA GA)GGAUGGA CAGC|CACAU UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- NAGUGGGG-A AUUUUCCG-C 721 AAU-GGAC-( -GAAA)-GUC U-GACGGA|G CGACGCUGCG UGAUGGAUGA AGGCC(---C 781 GUG--)GN-U U--GUAA~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~-~) 841 ~~~~~~~~~~ ~~~~~|~~~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~(~~~- 901 -~~~~~~|~~ ~~~~~~~~~) ~~~~~~~|~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~|~ 961 ~~~~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~|~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1141 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~( ~~~~)~~|~| ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~-~~ ~~~)-~~~~~ ~~~-|~~-~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(- 1441 ------~~~~ ~~~~-)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- 1501 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ (~~~~)~~~~ 1561 ~~~~~~~~~~ |~|~~~~~~~ ~~~~~~~~~~ (~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~-~~ ~~~------- ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~-(~ ~~~~~~~)~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~--~ ~~----~~~~ ~~~~-----~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~(~~~~~ -----)~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~|~|~~~ ~~~~~~~~~| ~~~|~~~~~~ ~|~~~~~~~~ 1861 |~~~(~~~~) ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ )~~~~--~~~ 2101 |~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- 2281 ~--~(--~~~ ~~~-)~~~~~ ~~~~~~~~-- ----~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~-~~~ ~~~~~~~)~~ ~~~~~-~~~~ ~~-~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.OM255 2717 bp RNA RNA 22-DEC-1997 DEFINITION Unidentified prasinophyte.; . ACCESSION U70722 KEYWORDS . SOURCE Unidentified prasinophyte. ORGANISM Unidentified prasinophyte. REFERENCE 1 (bases 1 to 412) AUTHORS Rappe,M.S., Kemp,P.F. and Giovannoni,S.J. TITLE Phylogenetic diversity of marine coastal picoplankton 16S DNA genes cloned from the continental shelf off Cape Hatteras, North Carolina JOURNAL Limnol. Oceanog. (1998) In press STANDARD No information REFERENCE 2 (bases 1 to 412) AUTHORS Rappe,M.S., Kemp,P.F. and Giovannoni,S.J. TITLE Direct Submission JOURNAL Submitted (13-SEP-1996) Dept. of Microbiology, Oregon State University, Nash Hall 220, Corvallis, OR 97331-3804, USA STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U70722 BASE COUNT 110 a 85 c 131 g 84 t 2307 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~A GAG-UU(U-G A)UCCU|GGC UCAGAAGGAA CGC-UGGCAG 61 CGUGCAU--A ACACAUGCAA GUCGAACG|A ug-------- --a-agcauu c(uu------ 121 ---------- --cg------ )gaaugug-- -g-------- ------aag- AGU--GGCGA 181 ACGGGUGAGG AA-CACGUAA GA-AUCUGC- CCCU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------C 301 GGU------- --CGGGGACA ACUC------ ---------- --------UU G(GAAA)CGA 361 -GAGCUAAUA CC-CGAU-AC ---------- ---------- ---------- --------GC 421 U-------(G UGG---)--- ----AGU--- ---GAAA--- ---------- ---------- 481 GA-------- ------(--- ----au-u-- -------)-- -------|-- ---UCGCCGA 541 GGGA-UGA|U -CUUGCGU|- CUGAUUA-GC UAGUUGG-UG -UG(G-UAAA GG)-CAUACC 601 AA|GGCGACG AU|CAGUAGC UG|GUCU(GA GA)GGAUGAA CAGC|CACAU UGGAA(CUGA 661 GACACG)GUC CAAA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 ANU-GGAC-( -GAAA)-GUC U-GACGGA|G CGACGCUGCG UGAAGGAUGA CGGNC(---C 781 GCG--)GG-U U--GUAAACU UC|UUUU-C~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~-~) 841 ~~~~~~~~~~ ~~~~~|~~~~ ~~~-~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~- 901 -~~~~~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~|~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~|~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1141 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~( ~~~~)~~|~| ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~-~~ ~~~)-~~~~~ ~~~-|~~-~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(- 1441 ------~~~~ ~~~~-)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- 1501 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ (~~~~)~~~~ 1561 ~~~~~~~~~~ |~|~~~~~~~ ~~~~~~~~~~ (~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~-~~ ~~~------- ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~-(~ ~~~~~~~)~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~--~ ~~----~~~~ ~~~~-----( 1741 ~~~~~~)~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~|~|~~~ ~~~~~~~~~| ~~~|~~~~~~ ~|~~~~~~~~ 1861 |~~~(~~~~) ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ )~~~~--~~~ 2101 |~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- 2281 ~--~(--~~~ ~~~-)~~~~~ ~~~~~~~~-- ----~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~(--~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~-~~~ ~~~~~~~)~~ ~~~~~-~~~~ ~~-~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.OM020 2717 bp RNA RNA 05-OCT-1995 DEFINITION Chloroplast Unidentified eukaryote clone OM20.; . ACCESSION U32670 KEYWORDS . SOURCE Chloroplast Unidentified eukaryote clone OM20. ORGANISM Chloroplast Unidentified eukaryote clone OM20. REFERENCE 1 (bases 1 to 1474) AUTHORS Rappe,M.S., Kemp,P.F. and Giovannoni,S.J. TITLE Chromophyte plastid 16S ribosomal RNA genes found in a clone library from Atlantic Ocean seawater JOURNAL Unpublished (1995) STANDARD No information REFERENCE 2 (bases 1 to 1474) AUTHORS Rappe,M.S. and Giovannoni,S.J. TITLE Direct Submission JOURNAL Submitted (31-JUL-1995) Michael S. Rappe, Microbiology Department, Oregon State University, 222 Nash Hall, Corvallis, OR 97331, USA STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U32670 NCBI gi: 1002747 BASE COUNT 400 a 301 c 421 g 352 t 1243 others ORIGIN 1 |--------- nnnnnnnnnC GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCCU--A AUACAUGCAA GUCGUACG|A AA-------- --------gu u(uu------ 121 ---------- --u------- )aac------ ---------- ------UUU- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUGA GA-AUUUAC- CUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GGGGGAUA ACAG------ ---------- --------CU G(GAAA)CGG 361 -UUGCUAAUA CC-CCAU-AU ---------- ---------- ---------- --------GC 421 U-------(U UCG---)--- ----AGU--- ---GAAAU-- ---------- ---------- 481 AGA------- ------(--- -------uuu a------)-- -------|-- --UCUGCCUG 541 AAGA-GAA|G -CUCGCGU|- CUGAUUA-GC UUGUUGG-UG -GG(G-UAAA GG)-CCUACC 601 AA|GGCGACG AU|CAGUAUC UG|GUUU(GA GA)GGAUGAU CAGA|CACAC UGGAA(CUGA 661 GACACG)GUC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUAGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUACCGCG UGAGGGAAGA CUGCC(---U 781 AUG--)GG-U U--GUAAACC UC|UUUU-UU CAGGGAGGAA ---------- (---UUU--) 841 ---------- UGACG|UGuA CCU-GAAGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACGGAG|GA UGCAAGUGUU AU-CCGGAAU CACUGGGC|G 961 UAAAGCGUCU GUAGGUG|GU UAAACAAG-| UCA-ACUGUU AAAUCUUGAA GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACU UCAA-AA-UC GCAGA--CGA -AAC-U|GUU -UG-A-CUAG AG-UA|UAGU 1141 A-----GGGG UAAAG|GGAA UUUCCAG-UG GAGCG(GUGA AA)UGCGUAG AUA---UUGG 1201 AAAGAACACC GAU---GGC( GAAG)GC|A| CUUUA-CUG| GGCUA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACACU 1321 |CAG-AGACG AAAGCUAGGG UAGCACAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CAAUGGAU-- --AC|UA|GA UG-UUGUUCA g--------- --------(- 1441 -------auc gac--)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|CUGUGCAG UAUC-AAAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG AAGUAUGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGGCG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGUUUG ACA----UG| -AU-ACG--A A------UUU UUAU-----( 1741 GAA-A-)GUA AA-AAG---U G--CC----- ----(guuu- -----)---- -----GGAA- 1801 ---------- -----|CGUA UACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UGAAGU)CCC GCAACGAGCG CAACCCUUA| UUUUUA-G-U 1921 UGCC------ ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --uuuu---- )--------- 2101 |GGAACUCUA GAAAGACUGC CGGU(UAUAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GCGGGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACACCC UGGGCUAC-A 2221 CACGUGCUAC AUUGGG--CG AGACAAUGAG AU----GCUA GUCU------ ---------- 2281 ----(----G CGA-)----- ---------- ----AGAU-A AGCUAAUC-U -AU-AAACUC 2341 GUUCUAAGUU CGGAUUGUAG GC(--UGCAA CUC)GCCUAC AUGAAGGUGG AAUCGCU--- 2401 ---AGUAAU- CGCUGG(UC- -AGCUAU)AC AGCGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGAAGCUGG- UUAUGCCCGA 2521 AGUCGUU--- ACUCU-AACC -(-----uuu u------)-G G-AGG-AGG- GC-GCCU-AA 2581 GG-UAGAAUU AGUGACUGGG GUGAAGUCGU AACAAGGUAA CCGUACU(GG AA)GGUGCGG 2641 UUGGAUCACC UCCUU---|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.OM021 2717 bp RNA RNA 05-OCT-1995 DEFINITION Chloroplast Unidentified eukaryote clone OM21.; . ACCESSION U32671 KEYWORDS . SOURCE Chloroplast Unidentified eukaryote clone OM21. ORGANISM Chloroplast Unidentified eukaryote clone OM21. REFERENCE 1 (bases 1 to 1473) AUTHORS Rappe,M.S., Kemp,P.F. and Giovannoni,S.J. TITLE Chromophyte plastid 16S ribosomal RNA genes found in a clone library from Atlantic Ocean seawater JOURNAL Unpublished (1995) STANDARD No information REFERENCE 2 (bases 1 to 1473) AUTHORS Rappe,M.S. and Giovannoni,S.J. TITLE Direct Submission JOURNAL Submitted (31-JUL-1995) Michael S. Rappe, Microbiology Department, Oregon State University, 222 Nash Hall, Corvallis, OR 97331, USA STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U32671 NCBI gi: 1002748 BASE COUNT 400 a 309 c 420 g 344 t 1244 others ORIGIN 1 |--------- nnnnnnnnnA GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCUU--A ACACAUGCAA GUCGAACG|A AA-------- --------gu u(uu------ 121 ---------- --u------- )aac------ ---------- ------UUU- AGU--GGCGA 181 ACGGGUGCGU AA-UACGUGA GA-AUCUUC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GGAGUAUA ACUG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAACA CU-CCAU-AU ---------- ---------- ---------- --------GU 421 C-------(G AGA---)--- ----GAU--- ---GAAAU-- ---------- ---------- 481 AAU------- ------(--- ---------u u------)-- -------|-- --AUUGCCUA 541 AGGA-UGA|G -CUCGCGC|- CUGAUUA-GC UAGUUGG-UG -AG(G-UAAU GG)-CUCACC 601 AA|GGCCACG AU|CAGUAGC UG|GUUU(GA GA)GAACGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UC-CG)GG -A--GGCAG- CAGUGAGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUACCGCG UGAGGGAUGA AGGAU(---U 781 UUG--)GU-C U--GUAAACC UC|UUUU-CU CAAGAAAGAA G--------- (---UUc--) 841 ---------- UGACG|GU-A CUU-GAGGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGGG|GA UGCAAGCGUU AU-CCGGAAU CAUUGGGC|G 961 UAAAGCGCCU GUAGGUU|GU UUACUAAG-| UCU-GUUGUU AAAGACUAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CUAG-AA-AA GCAAU--GGA -AAC-U|AAU -AG-A-CUAG AG-UA|UGGC 1141 A-----GGGG UAGAG|GGAA UUUCUAG-UG UAGCG(GUGA AA)UGCGUAG AUA---UUAG 1201 AAAGAACACC GGU---GGC( GAAA)GC|G| CUCUA-CUG| GACCA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACACU 1321 |CAG-AGGCG AAAGCUAGGG UAGCAAAAGG G(AUU-A-GA UAC)-CCCUG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|GA UG-UUGUGC- ---------- --------(- 1441 -------auu aa---)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|--GUACAG UGUC-CUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGCUC (GCAA)GGGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UA| -CU-ACG--A A------UUC UUUU-----( 1741 GAA-A-)AAG AG-AAG---U G--CC----- ----(uucg- -----)---- -----GGAA- 1801 ---------- -----|UGUA GAUA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUA| UUUUUA-G-U 1921 UACC------ ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( aauucguug- )--------- 2101 |GGUUCUUUA GAAAGACUGC CGGU(GACAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUAUGUCC UGGGCUAC-A 2221 CACGUGCUAC AAUGGU--UA AGACAAAGAG UC----GCGA GCUU------ ---------- 2281 ----(----G UAA-)----- ---------- ----AAGU-C AGCUAAUC-U CGU-AAACUU 2341 AGCCUAAGUU CAGAUUGUAG GC(--UGCAA CUC)GCCUGC AUGAAGUUGG AAUCGCU--- 2401 ---AGUAAU- CGCUGG(UC- -AGCCAU)AC AGCGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGGAGCUGG- UCAUACCCGA 2521 AACCGUU--- AGUUU-AACC -(-----guu u------)-G G-AGA-ACG- AC-GUCU-AA 2581 GG-UAGGGCU AGUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUU---|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.OM134 2717 bp RNA RNA 02-AUG-1997 DEFINITION Chloroplast environmental clone OM134.; . ACCESSION AF001661 KEYWORDS . SOURCE Chloroplast environmental clone OM134. ORGANISM Chloroplast environmental clone OM134. REFERENCE 1 (bases 1 to 750) AUTHORS Rappe,M.S., Suzuki,M.T., Vergin,K. and Giovannoni,S.J. TITLE Phylogenetic diversity of ultraplankton plastid SSU rRNA genes recovered in environmental nucleic acid samples from the Pacific and Atlantic coasts of the United States JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 750) AUTHORS Rappe,M.S. TITLE Direct Submission JOURNAL Submitted (30-APR-1997) Microbiology, Oregon State University, 220 Nash Hall, Corvallis, OR 97331, USA STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: AF001661 BASE COUNT 219 a 141 c 226 g 164 t 1967 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~|~~~ ~~~~~~~~~~ ~~~-~~~~~~ 61 ~~~~~~~~~~ ~~ACAUGCAA GUCGAACG|C GA-------- -----aagaa u(cc------ 121 ---------- --uucggg-- )auuugg--- ---------- ------ACG- AGU--GGCGA 181 ACGGGUGAGG AA-CACGUAA GA-AUCUAC- CUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------C 301 GGU------- --UGGGGAUA ACUU------ ---------- --------CU G(GAAA)CGG 361 -GAGCUAAUA CC-CAAU-AU ---------- ---------- ---------- --------GC 421 U-------(G UGG---)--- ----AGU--- ---GAAA--- ---------- ---------- 481 GA-------- ------(--- -----a-uu- -------)-- -------|-- ---UCGCCGA 541 GAGA-CGA|U -CUUGCGU|- CUGAUUA-GC UUGUUGG-GG -UG(G-UAAU GG)-CACACC 601 AA|GGCGACG AU|CAGUAGC UG|GUCU(GA GA)GGAUGGA CAGC|CACAU UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGAC-( -GAAA)-GUC U-GACGGA|G CGACGCUGCG UGAAGGAUGA AGGCC(---C 781 GUG--)GG-U U--GUAAACU UC|UUUU-CU CGAAGAAGAA ---------- (-aaaaa--) 841 ---------- UGACG|GU-A UUC-GAGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGAG|GA UGCAAGUGUU AU-UCGGAAU GAUUGGGC|G 961 UAAAGAGUCU GUAGGCG|GU UUAGAAAG-| UCU-UUUGUG AAAUACUUCA GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACU GAGG-CU-CC GCAAA--AGA -AAC-U|UCU -AG-A-CUUG AG-GA|AAGU 1141 A-----GAGG UACAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AUA---UCGG 1201 AAGGAACACC AAU-auGGC( GAAG)GC|A| CUGUA-CUG| GGCUU--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UCCUGACGCU 1321 |CAG-AGACG AAAGCUGAAG GAGUGAUUAG G(AUU-A-GA UAC)-CCUAG UAA-|UU-UC 1381 A-GCCGUAAA CGAUGAAA-- --ac|uc|ac ug-ucgagcc ---------- --------(- 1441 --------aa uau--)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ (~~~~)~~~~ 1561 ~~~~~~~~~~ |~|~~~~~~~ ~~~~~~~~~~ (~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~-~~ ~~~------- ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~--~ ~~----~~~~ ~~~~~~~~~( 1741 ~~~~~~)~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~(~~~~) ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ )~~~~--~~~ 2101 |~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- 2281 ~--~(--~~~ ~~~-)~~~~~ ~~~~~~~~-- ----~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~(-~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ -(~~~~-~~~ ~~~~~~~)~~ ~~~~~-~~~~ ~~-~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.OCS020 2717 bp RNA RNA 02-AUG-1997 DEFINITION Chloroplast environmental clone OCS20.; . ACCESSION AF001654 KEYWORDS . SOURCE Chloroplast environmental clone OCS20. ORGANISM Chloroplast environmental clone OCS20. REFERENCE 1 (bases 1 to 1479) AUTHORS Rappe,M.S., Suzuki,M.T., Vergin,K. and Giovannoni,S.J. TITLE Phylogenetic diversity of ultraplankton plastid SSU rRNA genes recovered in environmental nucleic acid samples from the Pacific and Atlantic coasts of the United States JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1479) AUTHORS Rappe,M.S. TITLE Direct Submission JOURNAL Submitted (30-APR-1997) Microbiology, Oregon State University, 220 Nash Hall, Corvallis, OR 97331, USA STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: AF001654 BASE COUNT 392 a 322 c 440 g 325 t 1238 others ORIGIN 1 |--------- ---------A GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCUU--A AUACAUGCAA GUCGUACG|A GA-------- --------gc u(uu------ 121 ---------- --u------- )agc------ ---------- ------UCU- AGU--GGCGG 181 ACGGGUGAGU AA-CACGUGA GA-AUCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GGAGGAUA ACAG------ ---------- --------CU G(GAAA)CGG 361 -UUGCUAAUA CU-CCAU-AU ---------- ---------- ---------- --------GC 421 C-------(G AGA---)--- ----GGU--- ---GAAA--- ---------- ---------- 481 GGA------- ------(--- -----u-uua -------)-- -------|-- --UCCACCUA 541 AGGA-GGA|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UA -GG(G-UAAU AG)-CCUACC 601 AA|GGCGACG AU|CAGUAGC UG|GUUU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUAGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUACCGCG UGAGGGAUGA CGGCC(---U 781 GUG--)GG-U U--GUAAACC UC|UUUU-CU CAAGGAAGAA ---------- (--guuc--) 841 ---------- UGACG|GU-A CUU-GAGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACAGAG|GA UGCA-GCGUU AU-CCGGAAU CACUGGGC|A 961 UAAAGCGUCU GUAGGUG|GU UUGGUAAG-| UCU-GCUGUU AAAGACUGGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CCAG-AA-AA GCAGU--GGA -AAC-U|GCU -AG-A-CUUG AG-UG|UGGU 1141 A-----GAGG UAGAG|GGAA UUCCUAG-UG UAGCG(GUGA AA)UGCGUAG AUA---UUAG 1201 GAAGAACACC AAU---GGC( GAAG)GC|A| CUCUA-CUG| GGCCA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- AACUGACACU 1321 |GAG-AGACG ACAGCUAGGG GAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|GA UG-UUGCACG ---------- --------(- 1441 ------uauu aacc-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CGUGCAG UAUC-GUAGC (UAAG)GCGU 1561 -UAAGUAUCC |C|GCCUGGG AAGUACGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GUAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -UC-ACA--A A------UCU UCCU-----( 1741 GAA-A-)GGG AA-GAG---U G--CC----- ----(uucg- -----)---- -----GGAA- 1801 ---------- -----|UGUG AACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG UAACCCUUG| UCUUUA-G-U 1921 UGCC-auca- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --uuuagu-- )-------ug 2101 |GGCACUUUA AAGAGACUGC CGGU(GAUAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GUGAGGACGA CGUC-AA--G UCAGCAUGCC CCUUACGCCC UGGGCUAC-A 2221 CACGUACUAC AAUGGC--CG AGACAAAGAG UC----GCAA GUUU------ ---------- 2281 ----(----G CAA-)----- ---------- ----AGAC-A AGCUAAUC-U CAU-AAACUC 2341 GGUCUCAGUU CGGAUUGUAG GC(--UGCAA CUC)GCCUAC AUGAAGUUGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCUAU)AC GGCGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGAAGCUGU- UCAUGCCCAA 2521 AGUCGUU--- ACCUU-AACC -(------gc g------)-- g-AGA-GGG- GC-GCCU-AA 2581 GG-UAGGGAU AGUGACUGGG GUGAAGUCGU AACAAGGUAG CCCUACU(GG AA)GGUGUGG 2641 CUGGAUCACC UCCUU---|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.OCS031 2717 bp RNA RNA 02-AUG-1997 DEFINITION Chloroplast environmental clone OCS31.; . ACCESSION AF001655 KEYWORDS . SOURCE Chloroplast environmental clone OCS31. ORGANISM Chloroplast environmental clone OCS31. REFERENCE 1 (bases 1 to 1472) AUTHORS Rappe,M.S., Suzuki,M.T., Vergin,K. and Giovannoni,S.J. TITLE the Pacific and Atlantic coasts of the United States Phylogenetic diversity of ultraplankton plastid SSU rRNA genes recovered in environmental nucleic acid samples from JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1472) AUTHORS Rappe,M.S. TITLE Direct Submission JOURNAL Submitted (30-APR-1997) Microbiology, Oregon State University, 220 Nash Hall, Corvallis, OR 97331, USA STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: AF001655 BASE COUNT 400 a 312 c 419 g 341 t 1245 others ORIGIN 1 |--------- ---------A GAG-UU(U-G A)UCAU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCUU--A ACACAUGCAA GUCGAACG|A AA-------- --------gu u(uu------ 121 ---------- --u------- )uac------ ---------- ------UUU- AGU--GGCGA 181 ACGGGUGCGU AA-UACGUGA GA-AUCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GGAGGAUA ACUG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAACA CU-CCAU-AU ---------- ---------- ---------- --------GU 421 C-------(G AGA---)--- ----GAU--- ---GAAA--- ---------- ---------- 481 UAA------- ------(--- -----u-uua -------)-- -------|-- --UU-GCCUA 541 AGGA-UGA|G -CUCACGC|- CUGAUUA-GC UAGUUGG-UG -AG(G-UAAU GG)-CUCACC 601 AA|GGCCACG AU|CAGUAGC UG|GUUU(GA GA)GAACGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UC-CG)GG -A--GGCAG- CAGUGAGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUACCGCG UGAGGGAUGA AGGAU(---U 781 UUG--)GU-C U--GUAAACC UC|UUUU-CU CAAGAAAGAA ---------- (--guuc--) 841 ---------- UGACG|GU-A CUU-GAGGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGGG|GA UGCAAGCGUU AU-CCGGAAU CAUUGGGC|G 961 UAAAGCGCCU GUAGGUU|GU UUAAUAAG-| UCU-GUUGUU AAAGCCUAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CUAG-AA-AA GCAAU--GGA -AAC-U|ACU -AG-A-CUAG AG-UA|UGGC 1141 A-----GGGG UAGAG|GGAA UUUCUAG-UG UAGCG(GUGA AA)UGCGUAG AUA---UUAG 1201 AAAGAACACC AGU---GGC( GAAA)GC|G| CUCUA-CUG| GACCA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |CAG-AGGCG AAAGCUAGGG UAGCAAAAGG G(AUU-A-GA UAC)-CCCUG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|GA UG-UUGUGCA ---------- --------(- 1441 ---------u aa---)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-UGUACAG UAUC-GUAGC (UAAC)GCGU 1561 -UAA-UAUCC |C|GCCUGGG GAGUACGCUC (GCAA)GGGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----U-| -ACUACG--A Au-----UCU U-ua-----( 1741 GAG-A-)uaa ag-aAG---U G--CC----- ----(uucg- -----)---- -----GGAA- 1801 ---------- -----|UGUA GAUA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUG| UUUUUA-G-U 1921 UACU-aau-- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --ucguu--- )--------a 2101 |gguuuUCUA GAAAGACUGC CGGU(GAcAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUAUGCCC UGGGCUAC-A 2221 CACGUGCUAC AAUGGU--UA AGACAAAGAG UC----GC-g agcu------ ---------- 2281 ----(----c gug-)----- ---------- ----agaguC AGCUAAUC-U CAU-AAACUU 2341 AGCCUAAGUU CAGAUUGUAG GC(--UGCAA CUC)GCCUAC AUGAAGUUGG AAUCGCU--- 2401 ---AGUAAU- CGCUGG(UC- -AGCCAU)AC AGCGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGGAGCUGG- UCAUACCCGA 2521 UACCGUU--- UGCUU-AACC -(------AU UC-----)-G G-AGA-GCG- AC-GUCU-AA 2581 GG-UAGGGCU AGUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUU---|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.OCS050 2717 bp RNA RNA 02-AUG-1997 DEFINITION Chloroplast environmental clone OCS50.; . ACCESSION AF001656 KEYWORDS . SOURCE Chloroplast environmental clone OCS50. ORGANISM Chloroplast environmental clone OCS50. REFERENCE 1 (bases 1 to 956) AUTHORS Rappe,M.S., Suzuki,M.T., Vergin,K. and Giovannoni,S.J. TITLE Phylogenetic diversity of ultraplankton plastid SSU rRNA genes recovered in environmental nucleic acid samples from the Pacific and Atlantic coasts of the United States JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 956) AUTHORS Rappe,M.S. TITLE Direct Submission JOURNAL Submitted (30-APR-1997) Microbiology, Oregon State University, 220 Nash Hall, Corvallis, OR 97331, USA STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: AF001656 BASE COUNT 270 a 194 c 278 g 214 t 1761 others ORIGIN 1 |--------- ---------A GAG-UU(U-G A)UCAU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCUU--A ACACAUGCAA GUCGAACG|A GA-------- --------gu u(uu------ 121 ---------- --u------- )aac------ ---------- ------UCU- AGU--GGCGA 181 ACGGGUGCGU AA-UACGUGA GA-AUCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GAAGAAUA ACUA------ ---------- --------CU G(GAAA)CGG 361 -UAGCUAAGU CU-UCAU-AU ---------- ---------- ---------- --------GC 421 C-------(G AGA---)--- ----GGU--- ---GAAA--- ---------- ---------- 481 UAG------- ------(--- -----u-uu- -------)-- -------|-- CAACUGCCUA 541 AGGA-UGA|G -CUCACGC|- CUGAUUA-GC UUGUUGG-UG -AG(G-UAAC GG)-CUUACC 601 AA|GGCCACG AU|CAGUAGC UG|GUUU(GA GA)GAACGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UC-CG)GG -A--GGCAG- CAGUGAGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUACCGCG UGAGGGAUGA AGGAU(---U 781 UUG--)GU-C U--GUAAACC UC|UUUU-CU CAAGAAAGAA ---------- (--guuc--) 841 ---------- UGACG|GU-A CUU-GAGGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGGG|GA UGCAAGCGUU AU-CCGGAAU CAUUGGGC|G 961 UAAAGCGCCU GUAGGUU|GU UUAGUAAG-| UCU-GUUGUU AAAGACCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CUGG-GA-AA GCAAU--GGA -AAC-U|ACU -AG-A-CUUG AG-UA|UGGC 1141 A-----GGGG UAGAG|GGAA UUUCUAG-UG UAGCG(GUGA AA)UGCGUAG AUA---UUAG 1201 AAAGAACACC GGC---GGC( GAAA)GC|G| CUCUA-CUG| GACCA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACACU 1321 |CAG-AGGCG AAAGCUAGGG GAGCAAAAGG G(AUU-A-GA UAC)-CCCUG UAG-|UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|GA UG-UUGCGCA ---------- --------(- 1441 ---------a uu---)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-UGUGCAG UAUC-UUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGCUC (GCAA)GGGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UA| -CU-ACA--A A------UCU UUUC-----( 1741 GAA-A-)CGA ~~~~~~~~~~ ~--~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~(~~~~) ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ )~~~~--~~~ 2101 |~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- 2281 ~--~(--~~~ ~~~-)~~~~~ ~~~~~~~~-- ----~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~(-~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~-~~~ ~~~~~~~)~~ ~~~~~-~~~~ ~~-~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.OCS054 2717 bp RNA RNA 02-AUG-1997 DEFINITION Chloroplast environmental clone OCS54.; . ACCESSION AF001657 KEYWORDS . SOURCE Chloroplast environmental clone OCS54. ORGANISM Chloroplast environmental clone OCS54. REFERENCE 1 (bases 1 to 1478) AUTHORS Rappe,M.S., Suzuki,M.T., Vergin,K. and Giovannoni,S.J. TITLE the Pacific and Atlantic coasts of the United States Phylogenetic diversity of ultraplankton plastid SSU rRNA genes recovered in environmental nucleic acid samples from JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1478) AUTHORS Rappe,M.S. TITLE Direct Submission JOURNAL Submitted (30-APR-1997) Microbiology, Oregon State University, 220 Nash Hall, Corvallis, OR 97331, USA STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: AF001657 BASE COUNT 413 a 300 c 414 g 351 t 1239 others ORIGIN 1 |--------- ---------C GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCCU--U AUACAUGCAA GUCGUACG|A GA-------- --------gu u(uu------ 121 ---------- --u------- )aac------ ---------- ------UCA- AGU--GGCGG 181 ACGGGUGAGU AA-CACGUAA GA-AUUUAC- CUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GGGGGACA ACAA------ ---------- --------GU G(GAAA)CAG 361 -UUGCUAAUA CC-CCAU-AU ---------- ---------- ---------- --------GC 421 U-------(A UUA---)--- ----AGU--- ---GAAAU-- ---------- ---------- 481 GAAA------ ------(--- -----u-uuu -------)-- -------|-- -UUUCGCCUA 541 AAGA-GAA|G -CUUGCGG|- CUGAUUA-GC UUGUUGG-UA -GG(G-UAAU AG)-CCUACC 601 AA|GGCGACG AU|CAGUAUC UG|GUUU(GA GA)GGACGAU CAGA|CACAC UGGAA(CUGA 661 GACACG)GUC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUAGGG-A AUCUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUACCGCG UGAGGGAUGA AUGCC(---U 781 AUG--)GG-U U--GUAAACC UC|UUUU-UU CAGGGAGGAA ---------- (--uaaa--) 841 ---------- UGACG|UGuA CCU-GAAGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACGGAG|GA UGCAAGUGUU AU-CCGGAAU CACUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC ACAGUAAG-| UCA-ACUGUU AAAUCUUGAA GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACU UCAA-AC-UU GCAGU--CGA -AAC-U|AUU -GA-G-CUAG AG-UA|UAGU 1141 A-----GAGG UAAAG|GGAA UUUCCAG-UG GAGCG(GUGA AA)UGCGUAG AGA---UUGG 1201 AAAGAACACC GAU---GGC( GAAG)GC|A| CUUUA-CUG| GGCUA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACACU 1321 |CAG-AGACG AAAGCUAGGG UAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG-|UC-CU 1381 A-GCUGUAAA CAAUGGAU-- --AC|UA|GG UG-UUGAACA ---------- --------(- 1441 ------gauu gaac-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-UGUGCAG UACU-AAAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG AAGUAUGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGUGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGUUUG ACA----UG| -AU-ACG--A AU----UUCU U--u-----( 1741 GAA-A-)aaa ga-aag---u g--cc----- ----(uuuu- -----)---- -----ggaa- 1801 ---------- -----|CGUA UACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUA| UUUUUA-G-U 1921 UGCC------ ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( ---uuuu--- )--------- 2101 |GGAACUCUA AAAAGACUGC CGGU(UAUAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GCGGGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACACCC UGGGCUAC-A 2221 CACGUGCUAC AAUGGG--CG AGACAAUGAG UC----GCAA GUCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGAU-U AGCUAAUC-U -AU-AAACUC 2341 GUUCUAAGUU CGGAUUGUAG GC(--UGCAA CUC)GCCUGC AUGAAGUUGG AAUCGCU--- 2401 ---AGUAAU- CGCUGG(UC- -AGCUAC)AC AGCGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGAAGCUGG- UUAUACCCGA 2521 AGUCGUU--- ACUCU-AACC -(------UU UUU----)-G G-AGG-GGG- AU-GCCU-AA 2581 GG-UAGAAUU AGUGACUGGG GUGAAGUCGU AACAAGGUAA CCGUACU(GG AA)GGUGCGG 2641 UUGGAUCACC UCCUU---|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.OCS056 2717 bp RNA RNA 02-AUG-1997 DEFINITION Chloroplast environmental clone OCS56.; . ACCESSION AF001658 KEYWORDS . SOURCE Chloroplast environmental clone OCS56. ORGANISM Chloroplast environmental clone OCS56. REFERENCE 1 (bases 1 to 554) AUTHORS Rappe,M.S., Suzuki,M.T., Vergin,K. and Giovannoni,S.J. TITLE Phylogenetic diversity of ultraplankton plastid SSU rRNA genes recovered in environmental nucleic acid samples from the Pacific and Atlantic coasts of the United States JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 554) AUTHORS Rappe,M.S. TITLE Direct Submission JOURNAL Submitted (30-APR-1997) Microbiology, Oregon State University, 220 Nash Hall, Corvallis, OR 97331, USA STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: AF001658 BASE COUNT 153 a 113 c 165 g 123 t 2163 others ORIGIN 1 |--------- ---------A GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCCU--A ACACAUGCAA GUCGUACG|A GG-------- --------gu u(uc------ 121 ---------- --a------- )uac------ ---------- ------CCA- AGU--GGCGG 181 ACGGGUGAGU AA-CACGUGA GA-AUUUAC- CCUA------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GGGGGACA ACAA------ ---------- --------CU G(GAAA)CGG 361 -UUGCUAAAA CC-CCAU-AU ---------- ---------- ---------- --------GC 421 U-------(U UCG---)--- ----AGU--- ---GAAAU-- ---------- ---------- 481 AGA------- ------(--- -----u-uua -------)-- -------|-- --UCUGCCUU 541 AGGA-AAA|G -CUCGCGG|- CUGAUUA-GC UAGUUGG-UA -AG(G-UAAU GG)-CUUACC 601 AA|GGCGACG AU|CAGUAUC UG|GUUU(GA GA)GGACGAU CAGA|CACAC UGGAA(CUGA 661 GACACG)GUC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUACCGCG UGAAGGAAGA CGGCC(---U 781 AUG--)GG-U U--GUAAACU UC|UUUU-UU CAGGGAGGAA ---------- (-cucaa--) 841 ---------- UGACG|UGuA CCU-GAAGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACGGAG|GA UGCAAGUGUU AU-CCGGAAU CACUGGGC|G 961 UAAAGCGUCU GUAGGUG|GU UUAGUAAG-| UCG-ACUGUU AAAUC~~~~~ ~~(~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1081 ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~|~~~ ~~~~~~~~~~ ~~~~~|~~~~ 1141 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~( ~~~~)~~|~| ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~-~~ ~~~)-~~~~~ ~~~-|~~-~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~|~~|~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(- 1441 ------~~~~ ~~~~-)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ (~~~~)~~~~ 1561 ~~~~~~~~~~ |~|~~~~~~~ ~~~~~~~~~~ (~~~~)~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~-~~ ~~~------- ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~--~ ~~----~~~~ ~~~~~~~~~( 1741 ~~~~~~)~~~ ~~~~~~~~~~ ~--~~~~~~~ ~~~~(~~~~~ ~~~~~)~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~|~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~(~~~~) ~~~~~~~~~( ~~~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ )~~~~--~~~ 2101 |~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-- 2281 ~--~(--~~~ ~~~-)~-~~~ ~~~~~~~~-- ----~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~(-~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~(~~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~-~~~ ~~~~~~~)~~ ~~~~~-~~~~ ~~-~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~(~~ ~~)~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.OCS162 2717 bp RNA RNA 02-AUG-1997 DEFINITION Chloroplast environmental clone OCS162.; . ACCESSION AF001659 KEYWORDS . SOURCE Chloroplast environmental clone OCS162. ORGANISM Chloroplast environmental clone OCS162. REFERENCE 1 (bases 1 to 1490) AUTHORS Rappe,M.S., Suzuki,M.T., Vergin,K. and Giovannoni,S.J. TITLE the Pacific and Atlantic coasts of the United States Phylogenetic diversity of ultraplankton plastid SSU rRNA genes recovered in environmental nucleic acid samples from JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1490) AUTHORS Rappe,M.S. TITLE Direct Submission JOURNAL Submitted (30-APR-1997) Microbiology, Oregon State University, 220 Nash Hall, Corvallis, OR 97331, USA STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: AF001659 BASE COUNT 401 a 323 c 447 g 319 t 1227 others ORIGIN 1 |--------- ---------A GAG-UU(U-G A)UCAU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGAACG|G UU-------- -----uuuau u(uu------ 121 ---------- --cuucggag )aauaaa--- ---------- ------GAU- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUAC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 AGA------- --GGGGGACA ACAG------ ---------- --------UU G(GAAA)CGA 361 -CUGCUAAUA CC-CCAU-AA ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGU--- ---UAAA--- ---------- ---------- 481 CGAAUC---- ------(--- -----u-uu- -------)-- -------|-G AUUCGGCUUA 541 AGGA-GGG|G -CUUGCGU|- CUGAUUA-GC UAGUUGG-UA -AG(G-UAAA UG)-CUUACC 601 AA|GGCGACG AU|CAGUAGC UG|GUUU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(AA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGCCGCG UGGAGGAAGA CGGCC(---C 781 GUG--)GG-U U--GUAAACU CC|UUUU-CU CAGAGAAGAA ---------- (--gcuc--) 841 ---------- UGACG|GU-A UCU-GAGGAA -UAAGCAUC| GGCU-AACU- CCGUG(CCA- 901 -GCAGCC|GC GGU---AA-) UACGGAG|GA UGCAAGCGUU AU-CCGGAAU CAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GU UUUGUAAG-| UCC-GCUGUA AAAGAGUACA GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACU GUAU-AU-GG GCAGU--GGA -AAC-U|ACA -AG-A-CUGG AG-UG|UGGU 1141 A-----GGGG UAGAG|GGAA UUCCCGG-UG UAGCG(GUGA AA)UGCGUAG AUA---UCGG 1201 GAAGAACACC AAC---GGC( GAAA)GC|A| CUCUA-CUG| GGCCA--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 |GAG-AGACG AAAGCUAAGG GAGCGAAAAG G(AUU-A-GA UAC)-CCUUG UAG-|UC-UU 1381 A-GCCGUAAA CGAUGGAU-- --AC|UA|AG UG-GUGCGCG ---------- --------(- 1441 ------uauu caug-)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-CCUGCAC UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUAUGCUC (GCAA)GGGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU|GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-ACG--A AA-----UCU UUCA-----( 1741 GAG-A-)UGA GA-GAG---U G--CC----- ----(uucg- -----)---- -----GGAA- 1801 ---------- -----|CGUG GACA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUA| UCUUUA-G-U 1921 U--------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --aaaaaca- )--------- 2101 |---ACUCUA GAGAGACUGC CAGU(GAUAA ----)----- ---------- ---------A 2161 CUGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACGCCC UGGGCUAC-A 2221 CACGUGCUAC AAUGGU--UA GGACAAAGAG AU----GCUA ACUC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GAGC-A AGCUAACC-U CAA-AAACCU 2341 AAUCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGGUGG AAUCGCU--- 2401 ---AGUAAU- CGCAGG(UC- -AGCCAU)AC UGCGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGGAGCUGG- CUAUGCCCAA 2521 AGUUGUU--- ACCCU-AACC -(-------U UCG----)-G G-AGG-GGG- AU-GCCU-AA 2581 GG-CAGAGCU GGUGACUAGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUU---|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS chl.OCS182 2717 bp RNA RNA 02-AUG-1997 DEFINITION Chloroplast environmental clone OCS182.; . ACCESSION AF001660 KEYWORDS . SOURCE Chloroplast environmental clone OCS182. ORGANISM Chloroplast environmental clone OCS182. REFERENCE 1 (bases 1 to 1482) AUTHORS Rappe,M.S., Suzuki,M.T., Vergin,K. and Giovannoni,S.J. TITLE the Pacific and Atlantic coasts of the United States Phylogenetic diversity of ultraplankton plastid SSU rRNA genes recovered in environmental nucleic acid samples from JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1482) AUTHORS Rappe,M.S. TITLE Direct Submission JOURNAL Submitted (30-APR-1997) Microbiology, Oregon State University, 220 Nash Hall, Corvallis, OR 97331, USA STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: AF001660 BASE COUNT 404 a 299 c 429 g 349 t 1236 others ORIGIN 1 |--------- ---------A GAG-UU(U-G A)UCAU|GGC UCAGAAGGAA CGC-UGGCAG 61 CGUGCAU--A ACACAUGCAA GUCGAACG|G GA-------- --u-uauuau c(uu------ 121 ---------- --cg------ )gaugaua-- -u-------- ------GAG- AGU--GGCGA 181 ACGGGUGAGU AA-CACGUAA GA-AUCUAC- CUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --CGGGGAUA ACUU------ ---------- --------CU G(GAAA)CGG 361 -AUGCUAAUA CC-CGAU-AU ---------- ---------- ---------- --------GC 421 U-------(G UGG---)--- ----AGU--- ---GAAA--- ---------- ---------- 481 GGA------- ------(--- -----a-uu- -------)-- -------|-- --UC-GCCUA 541 AAGA-UGA|U -CUUGCGU|- CUGAUUA-GC UAGAUAG-UG -UG(G-UAAU GG)-CGCACU 601 AU|GGCGACG AU|CAGUAGC UG|GUCU(GA GA)GGAUGGA CAGC|CACAU UGGAA(CUGA 661 GACACG)GUC CAAA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CGACGCUGCG UGAAGGAUGA CGGCC(---U 781 GCG--)GG-U U--GUAAACU UC|UUUU-CU CGAAGAAGAA ---------- (--uaaa--) 841 ---------- UGACG|GU-A UUC-GAGGAA -UAAGCAUC| GGCU-AACU- CUGUG(CCA- 901 -GCAGCC|GC GGU---AA-) GACAGAG|GA UGCAAGUGUU AU-UCGGAUU GAUUGGGC|G 961 UAAAGCGUCU GUAGGCG|GU UUGGAAAG-| UCU-UUUGUG AAAUUCUUCA GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACU GGGG-GU-CC GCAAA--AGA -AAC-U|UCU -AG-G-CUUG AG-GG|AAGU 1141 A-----GAGG UACAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AUA---UCGG 1201 AAGGAACACC AAU-auGGC( GAAG)GC|A| CUGUA-CUG| GGCUU--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ACCUGACGCU 1321 |AAG-AGACG AAAGCUAAAG GAGUGAUUAG G(AUU-A-GA UAC)-CCUAG UAA-|UU-UU 1381 A-GCCGUAAA CGAUGGAA-- --AC|UC|AC UG-CCGAGCC ---------- --------(- 1441 ------ggua uuc--)---- ---------- ---------- ---------- ---------- 1501 |--------- ---------- ---------- -|-GGAGCGG UGGU-CAAGC (UAAC)GCGU 1561 -GAAGUUUCC |C|GCCUGGG GACUACGCAU (GCAA)AUGU GAAACUCAAA GGAAUUGACG 1621 GGGACCC-GC ACA------- AGCGGU|GGA GUAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAAAACCUUA CCAAGGUUUG Aaa----UC| -AU-UUC--A AA-----ACU CUUU-----( 1741 GAA-A-)-GA AG-agc---C U--CC----- ----(uucg- -----)---- -----GGA-- 1801 ---------- -----|ugGA AUGA|C|AGG UGGUGCAUG| GCU|GUCGUC A|-G-CUCGU 1861 |GUU(GUGA) AAUGUCAAG( UUAAGU)CUU GUAACGAGCG CAACCCAUG| UCUUUU-G-U 1921 UGCU---G-- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --uuua---- )--------C 2101 |AGUGCUUAA AAGAGACUGC CGC-(UCUAC ----)----- ---------- ---------A 2161 GCGGAGGAAG GUGUGGAUGA UGUC-AA--G UCAGCAUGCC CCUUAUAUCU UGGGCUAC-A 2221 CACGUACUAC AAUGGU--AG GGACAAUGAG UC----GCAA ACCU------ ---------- 2281 ----(----G CGA-)----- ---------- ----AGGC-U AGCCAAUC-U CAA-AAACCC 2341 UAUCUCAGUU CGGAUUGUAC UC(--UGCAA CUC)GAGUGC AUGAAGGUGG AAUCGCU--- 2401 ---AGUAAU- CGCUGG(UC- -AGC-AU)AC AGCGGUGAAU AC--G-U--- ---------- 2461 -------CCC GGGUCUUGUA CACACUGCCC GUCACAC-au GGAAGUCGA- UCCUUCCCUA 2521 AGUCGUU--- ACUCG-AACC -(------UU UUA----)-G G-ACG-AGG- AU-GCCG-AA 2581 GG-CAGGGUU GGUGACUANG GUGAAGUCCU AACAAGGUAG CCGUACU(GG AA)GGUGUGG 2641 CUGGAUCACC UCCUU---|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS 2.11.2.1.1 2717 bp RNA RNA 09-JAN-1999 DEFINITION 2.11.2.1.1 SKELETONEMA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.11.2.1.1 SKELETONEMA_SUBGROUP. ORGANISM 2.11.2.1.1 SKELETONEMA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 2717 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~-----~ ~~~~~~~~~~ ~~~~~~---- -----~~~~~ ~~~--~~~~~ 181 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--~ 301 ~~~------- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 -~~~~~~~~~ ~~~~~~~~~~ ---------- ---------- -------~~~ ~~~~~~~~~~ 421 ~~------~~ ~~~~~-~~-- ----~~~~~~ ~~~~~~~~~~ ~~-------- ---------- 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~-~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~-~~~~~ -~--~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 721 ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 781 ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 901 ~~~~~~~-~~ ~~~---~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~|~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~------ 1081 ---~~~~~~~ ~~~~~~~-~~ ~~~~~--~~~ ~~~~~~-~~~ -~~-~-~~~~ ~~-~~~~~~~ 1141 ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~---~~~~ 1201 ~~~~~~~~~~ ~~~~--~~~~ ~~~~~~~-~- ~~~~~-~~~~ ~~~~~--~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ~~~~~~~~~~ 1321 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~--~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~-- --~~-~~~~~ ~~-~~~~~~~ ~~~~~~~--- --------~- 1441 -------~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---------- 1501 ---------- ---------- ---------- --~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 1561 -~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~---~~| ~~~-~~~~~~ ~------~~~ ~~~~~~---~ 1741 ~~~-~~~~~~ ~~-~~~~~~~ ~~~~~~~--- ----~~~~~~ -----~~--- -----~~~~~ 1801 ~~-------- -----~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~-~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ 1921 ~~~~-~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------~ --~~~~~--- ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ----~~---- ---~~~~~~~ ~~~------~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 2221 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~---~~~~ ~~~~------ ---------- 2281 ----~----~ ~~~-~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~--~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- 2401 ---~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~-- ---------- 2461 -------~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~~ ~-~~~~~~~~ ~~~~~~~-~~ 2581 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS env.OM19 2717 bp RNA RNA 02-JUL-1998 DEFINITION clone OM19.. ACCESSION No information KEYWORDS No information. SOURCE clone OM19. ORGANISM clone OM19. REFERENCE 1 AUTHORS Rappe,M.S., Kemp,P.F. and Giovannoni,S.J. TITLE Chromophyte plastid 16S ribosomal RNA genes found in a clone library from Atlantic Ocean seawater JOURNAL J. Phycol. 31, 979-988 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U32668|g1002745 BASE COUNT 188 a 152 c 198 g 161 t 2018 others ORIGIN 1 .......... .........C GAG-UU(U-G A)UCAU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCCU--A ACACAUGCAA GUCGUACG-A G--------- -------AGU U(UU------ 121 ---------- --U------- )AACU----- -----|---- ------CA-- AGU--GGCGG 181 ACGGGUGAGU AA-CACGUGA GA-AUUUGC- CUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GGGGGAUA ACAG------ ---------- --------AG U(GAAA)ACG 361 -CUGCUAAUA CC-CCAU-AU ---------- ---------- ---------- --------GC 421 U-------(U UCU---)--- ----AGU--- ---GAAAU-- ---------- ---------- 481 GGA------- ------(--- -------UUU A------)-- -------|-- --UUCGCCUA 541 AAGA-GAA|G -CUCGCGG|- CUGAUUA-GC UUGUUGG-UA -AG(G-UAAU GG)-CUUACC 601 AA|GGCGACG AU-CAGUAUC UG|GUUU(GA GA)GGACGAU CAGA|CACAC UGGAA(CUGA 661 GACACG)GUC CAG....-.. .(..-..).. -.--...... .......... ........-. 721 .........( -....).... .-......|. .......... .......... .....(..-. 781 .....).... .--....... ..|....... .......... .......... (........) 841 .......... .....-.... .......... .......... .........- .....(.... 901 .......-.. ...---..-) .......|.. .......... ..-....... ........|. 961 .......... .......|.. ........-| ...-...... .......... ..(....... 1021 .......... .......... .......... .......... .......... ....------ 1081 ---...)... .......-.. .....--... ......-... -..-.-.... ..-....... 1141 ..----.... .....|.... .......-.. .....(.... ..)....... ...---.... 1201 .......... ....--...( ....)..-.- .....-.... .....--... .......... 1261 .......... .......... .......... .........- ---------- .......... 1321 -......... .......... .......... .(...-.... ...)...... ...--..... 1381 .......... ........-- --..-..|.. ..-....... .......--- --------(- 1441 -------... ..---).... .......... .......... .......--- ---------- 1501 ---------- ---------- ---------- --........ ....-..... (....).... 1561 -......... |.|....... .......... (....).... .......... .......... 1621 .......... .......... ......-... .......... ........(. .......).. 1681 .......... .......... ....---..| ...-...... .------... ......---( 1741 ...-..)... ..-....... .......--- ----(..... -----).--- -----..... 1801 ..-------- -----|.... ....|.|... .........| ...-...... .|..-..... 1861 |...(....) .........( ......)... .......... .........| ......-... 1921 ....-..... -......... .......... .........- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --.....--- )......... 2101 |GGAACUCUA GAAAGACUGC UGGU(UAUAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GCGGGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACACCC UGGGCUAC-A 2221 CACGUGCUAC AUUGGG--CG AGACAAUGAG AC----GCAA ACCU------ ---------- 2281 ----(----G CGA-)----- ---------- ----AGGC-U AGCUAAUC-U AU--AAACUC 2341 GUUCUAAGUU CGGAUUGUAG GC(--UGCAA CUC)GCCUGC AUGAAGGUGG AAUCGCU--- 2401 ---AGUAAU- CGCUGG(UC- -AGC-AU)AC AGCGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGAAGCUGG- UUAUACCCGA 2521 AGUCGUU--- ACUCU-AACC -(-----GUU U------)-G G-AG-GAGG- AU-GCCU-AA 2581 GG-UAGAAUU AGUGACUAGG GUGAAGUCGU AACAAGGUAA CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUU..-|. .......... .......... .......... .....~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS env.OM22 2717 bp RNA RNA 02-JUL-1998 DEFINITION clone OM22.. ACCESSION No information KEYWORDS No information. SOURCE clone OM22. ORGANISM clone OM22. REFERENCE 1 AUTHORS Rappe,M.S., Kemp,P.F. and Giovannoni,S.J. TITLE Chromophyte plastid 16S ribosomal RNA genes found in a clone library from Atlantic Ocean seawater JOURNAL J. Phycol. 31, 979-988 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U32669|g1002746 BASE COUNT 186 a 153 c 198 g 163 t 2017 others ORIGIN 1 .......... .........C GAG-UU(U-G A)UCAU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCCU--U ACACAUGCAA GUCGUACG-A G--------- -------AGU U(UU------ 121 ---------- --U------- )AACU----- -----|---- ------CA-- AGU--GGCGG 181 ACGGGUGAGU AA-CACGUGA GU-AUUUAC- CUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GGGGGACA ACAG------ ---------- --------UU G(GAAA)CGA 361 -CUGCUAAUA CC-CCAU-AU ---------- ---------- ---------- --------GC 421 U-------(U UAG---)--- ----AGU--- ---GAAAU-- ---------- ---------- 481 GGA------- ------(--- -------UUU A------)-- -------|-- --UCCGCCUA 541 AAGA-AAA|G -CUCGCGG|- CUGAUUA-GC UUGUUGG-UG -AG(G-UAAU GG)-CUCACC 601 AA|GGCGACG AU-CAGUAUC UG|GUUU(GA GA)GGACGAU CAGA|CACAC UGGAA(CUGA 661 GACACG)GUC CAG....-.. .(..-..).. -.--...... .......... ........-. 721 .........( -....).... .-......|. .......... .......... .....(..-. 781 .....).... .--....... ..|....... .......... .......... (........) 841 .......... .....-.... .......... .......... .........- .....(.... 901 .......-.. ...---..-) .......|.. .......... ..-....... ........|. 961 .......... .......|.. ........-| ...-...... .......... ..(....... 1021 .......... .......... .......... .......... .......... ....------ 1081 ---...)... .......-.. .....--... ......-... -..-.-.... ..-....... 1141 ..----.... .....|.... .......-.. .....(.... ..)....... ...---.... 1201 .......... ....--...( ....)..-.- .....-.... .....--... .......... 1261 .......... .......... .......... .........- ---------- .......... 1321 -......... .......... .......... .(...-.... ...)...... ...--..... 1381 .......... ........-- --..-..|.. ..-....... .......--- --------(- 1441 -------... ..---).... .......... .......... .......--- ---------- 1501 ---------- ---------- ---------- --........ ....-..... (....).... 1561 -......... |.|....... .......... (....).... .......... .......... 1621 .......... .......... ......-... .......... ........(. .......).. 1681 .......... .......... ....---..| ...-...... .------... ......---( 1741 ...-..)... ..-....... .......--- ----(..... -----).--- -----..... 1801 ..-------- -----|.... ....|.|... .........| ...-...... .|..-..... 1861 |...(....) .........( ......)... .......... .........| ......-... 1921 ....-..... -......... .......... .........- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --.....--- )......... 2101 |GGAACUCUA GAAAGACUGC UGGU(UAUAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GCGGGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACACCC UGGGCUAC-A 2221 CACGUGCUAC AUUGGG--CG AGACAAUGAG AU----GCAA CUCU------ ---------- 2281 ----(----G CGA-)----- ---------- ----AGAU-U AGCUAAUC-U AU--AAACUC 2341 GUUCUAAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGGUGG AAUCGCU--- 2401 ---AGUAAU- CGCUGG(UC- -AGCUAC)AC AGCGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGAAGCUGG- UUAUACCCGA 2521 AGUCGUU--- ACUCU-AACC -(-----GUU U------)-G G-AG-GAGG- AU-GCCU-AA 2581 GG-UAGAAUU AGUGACUGGG GUGAAGUCGU AACAAGGUAA CCGUACU(GG AA)GGUGUGG 2641 UUGGAUCACC UCCUU..-|. .......... .......... .......... .....~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS env.PAD32 2717 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: D26219|g498421 library_source= unidentified soil bacterium from paddy field BASE COUNT 71 a 63 c 68 g 67 t 2448 others ORIGIN 1 .......... .......... ...-..(... .)....|... .......... .......... 61 .......... .......... .......... .......... .......... .(........ 121 .......... ....-----. )......... .....|---- -----..... ...--..... 181 .......... ..-....... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......--. 301 ...------- --........ .......... .......... .......... .(....)... 361 -......... .......... ---------- ---------- -------... .......... 421 ..------(. .....-).-- ----...... .......... ..-------- ---------- 481 .......... ......(... .......... .......).. .......|.. .......... 541 ....-...|. -.......|. .......... .......... ...(.-.... ..)....... 601 ..|....... ..-....... ..|....(.. ..)....... ....|..... .....(.... 661 ......)... .......-.. .(..-..).. -.--...... .......... ........-. 721 .........( -....).... .-......|. .......... .......... .....(..-. 781 .....).... .--....... ..|....... .......... .......... (........) 841 .......... .....-.... .......... .......... .........- .....(.... 901 .......-.. ...---..-) .......|.. .......... ..-....... ........|. 961 .......... .......|.. ........-| ...-...... .......... ..(....... 1021 .......... .......... .......... .......... .......... ....------ 1081 ---...)... .......-.. .....--... ......-... -..-.-.... ..-....... 1141 ..----.... .....|.... .......-.. .....(.... ..)....... ...---.... 1201 .......... ....--...( ....)..-.- .....-.... .....--... .......... 1261 .......... .......... .......... .........- ---------- .......... 1321 -......... .......... .......... .(...-.... ...)...... ...--..... 1381 .......... ........-- --..-..|.. ..-....... .......--- --------(- 1441 -------... ..---).... .......... .......... .......--- ---------- 1501 ---------- ---------- ---------- --........ ....-..... (....).... 1561 -......... |.|....... .......... (....).... .......... .......... 1621 .......... .......... ......-... .......... ........(. .......).. 1681 .......... .......... ....---..| ...-...... .------... ......---( 1741 ...-..)... ..-....... .......--- ----(..... -----).--- -----..... 1801 ..-------- -----|.... ....|.|... .........| ...-...... .|..-..... 1861 |...(....) .........( ......)... .......... ......UCA| UUUUUA-G-U 1921 UGCC------ ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --UUUAU--- )--------- 2101 |GGAACUCUA GAAAGACUGC CGGU(UAUAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GCGGGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACACCC UGGGCUAC-A 2221 CACGUGCUAC AAUGGG--UG AGACAAUGAG AU----GCAA CUCU------ ---------- 2281 ----(----G CGA-)----- ---------- ----AGAC-A AGCUAAUC-U AU--AAACUC 2341 ACUCUAAGUU CGGAUUGUAG GC(--UGCAA CUC)GCCUGC AUGAAGUUGG AAUCGCU--- 2401 ---AGUAAU- CGCUGG(UC- -AGCUAU)AC AGCGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGCCUU... .......... .......... .......... .......... 2521 .......--- .......... .(........ .....--).. .-........ .......-.. 2581 ..-....... .......... .......... .......... .......(.. ..)....... 2641 .......... .......-|. .......... .......... .......... .....~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS env.PAD22 2717 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: D26209|g498410 library_source= unidentified soil bacterium from paddy field BASE COUNT 70 a 61 c 69 g 68 t 2449 others ORIGIN 1 .......... .......... ...-..(... .)....|... .......... .......... 61 .......... .......... .......... .......... .......... .(........ 121 .......... ....-----. )......... .....|---- -----..... ...--..... 181 .......... ..-....... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......--. 301 ...------- --........ .......... .......... .......... .(....)... 361 -......... .......... ---------- ---------- -------... .......... 421 ..------(. .....-).-- ----...... .......... ..-------- ---------- 481 .......... ......(... .......... .......).. .......|.. .......... 541 ....-...|. -.......|. .......... .......... ...(.-.... ..)....... 601 ..|....... ..-....... ..|....(.. ..)....... ....|..... .....(.... 661 ......)... .......-.. .(..-..).. -.--...... .......... ........-. 721 .........( -....).... .-......|. .......... .......... .....(..-. 781 .....).... .--....... ..|....... .......... .......... (........) 841 .......... .....-.... .......... .......... .........- .....(.... 901 .......-.. ...---..-) .......|.. .......... ..-....... ........|. 961 .......... .......|.. ........-| ...-...... .......... ..(....... 1021 .......... .......... .......... .......... .......... ....------ 1081 ---...)... .......-.. .....--... ......-... -..-.-.... ..-....... 1141 ..----.... .....|.... .......-.. .....(.... ..)....... ...---.... 1201 .......... ....--...( ....)..-.- .....-.... .....--... .......... 1261 .......... .......... .......... .........- ---------- .......... 1321 -......... .......... .......... .(...-.... ...)...... ...--..... 1381 .......... ........-- --..-..|.. ..-....... .......--- --------(- 1441 -------... ..---).... .......... .......... .......--- ---------- 1501 ---------- ---------- ---------- --........ ....-..... (....).... 1561 -......... |.|....... .......... (....).... .......... .......... 1621 .......... .......... ......-... .......... ........(. .......).. 1681 .......... .......... ....---..| ...-...... .------... ......---( 1741 ...-..)... ..-....... .......--- ----(..... -----).--- -----..... 1801 ..-------- -----|.... ....|.|... .........| ...-...... .|..-..... 1861 |...(....) .........( ......)... .......... ......UCA| UUUUUA-G-U 1921 UGCC------ ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --UUAU---- )--------- 2101 |GGAACUCUA AAAAGACUGC CGGU(UAUAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GCGGGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACACCC UGGGCUAC-A 2221 CACGUGCUAC AAUGGG--CG AGACAAUGAG AU----GCAA GUCU------ ---------- 2281 ----(----G CGA-)----- ---------- ----AGAU-U AGCUAAUC-U AU--AAACUC 2341 GUUCUAAGUU CGGAUUGUAG GC(--UGCAA CUC)GCCUGC AUGAAGUUGG AAUCGCU--- 2401 ---AGUAAU- CGCUGG(UC- -AGCUAU)AC AGCGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGCCUU... .......... .......... .......... .......... 2521 .......--- .......... .(........ .....--).. .-........ .......-.. 2581 ..-....... .......... .......... .......... .......(.. ..)....... 2641 .......... .......-|. .......... .......... .......... .....~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS env.agg462 2717 bp RNA RNA 02-JUL-1998 DEFINITION marine snow. ACCESSION No information KEYWORDS No information. SOURCE marine snow. ORGANISM marine snow. REFERENCE 1 AUTHORS Delong,E.F., Franks,D.G. and Alldredge,A.L. TITLE free-living marine bacterial assemblages Phylogenetic diversity of aggregate-attached versus JOURNAL Limnol. Oceanog. 38, 924-934 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: L10940|g482254 library_source= marine snow associated BASE COUNT 353 a 266 c 346 g 287 t 1465 others ORIGIN 1 .......... .......... ...-..(... .)....|... .......... .......... 61 .......... .......... .......... .......... .......... .(........ 121 .......... ....-----. )......... .....|---- -----..... ...--..... 181 .......... ..-....... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......--. 301 ...------- --........ .......... .......... .......... .(....)... 361 -.......UA CC-CCAU-AU ---------- ---------- ---------- --------GC 421 U-------(U UCG---)--- ----AGU--- ---GAAAU-- ---------- ---------- 481 GGAU------ ------(--- -----UUAUA UUU----)-- -------|-- -AUCCGCCUA 541 GAGA-GAA|G -CUCGCGG|- CUGAUUA-GC UUGUUGG-UA -AG(G-UAAG AG)-CUUACC 601 AA|GGCGACG AU-CAGUAUC UG|GUUU(GA GA)GGACGAU CAGA|CACAC UGGAA(CUGA 661 GACACG)GUC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUACCGCG UGAGGGAAGA CUGCC(---U 781 AUG--)GG-U Y--GUAAACC UC|CUUU-UU CAGGGAGGAA ---------- (--UAAAA-) 841 ---------- UGACG-UU-A CCU-GAAGAA -UAAGCAUC- GGCU-AACU- CCGUG(CCA- 901 -GCAGCC-GC GGU---AA-) GACGGAG|GA UGCAAGUGUU AU-CCGGAAU CACUGGGC|G 961 UAAAGCGUCU GUAGGUG|GU UUGAUAAG-| UCA-ACUGUU AAAUCUUGAG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACU UCAA-AA-UC GCAGU--CGA -AAC-U-AUU -AG-A-CUAG AG-UA-UAGU 1141 A-----GAGG UAAAG|GGAA UUUCCAG-UG GAGCG(GUGA AA)UGCGUAG AUA---UUGG 1201 AAAGAACACC GAU---GGC( GAAA)GC-A- CUUUA-CUG- GGCUA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUAACACU 1321 -CAG-AGACG AAAGCUAGGG UAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG--UC-CU 1381 A-GCCGUAAA CUAUGGAU-- --GC-UA|GA UG-UUGAACA ------G--- --------(- 1441 -------AUC GA---)CC-- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---CGUGCAG UAUC-AAACG (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG AAGUAUGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGG-CC-GC ACA------- AGCGGU-GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGUUUG ACA----UG| -AU-ACG--A A------UUU CUUU-----( 1741 GAA-A-)GAA GA-AAG---U G--CC----- ----(GUUU- -----)---- -----GGAA- 1801 ---------- -----|CGUA UACA|C|AGG UGGUGCAUG| GCU-GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC CGAACGACGC GAACCCUUG| UUUUUA-G-U 1921 UGCC------ ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --UUUAU--- )--------- 2101 |GGAACUCUA GAAAGACCGC CGGU(UAUAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GCGGGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACACCC UGGGCUAC-A 2221 CACGUGCUAC AUUGGG--CG AGACAAUGAG AC----GCAA CUCU------ ---------- 2281 ----(----G CAA-)----- ---------- ----AGAU-A AGCUAAUC-U AU--AAACUC 2341 GUUCUAAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGGUGG AAUCGCU--- 2401 ---AGUAAU- CGCUGG(UC- -AGCUAU)AC AGCGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGAAGCUGG- UUAUACCCGA 2521 AGUCGUU--- ACUUU-AACC -(-----AAU U------)-G G-AG--GAG- G......-.. 2581 ..-....... .......... .......... .......... .......(.. ..)....... 2641 .......... .......-|. .......... .......... .......... .....~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS env.agg56 2717 bp RNA RNA 02-JUL-1998 DEFINITION marine snow. ACCESSION No information KEYWORDS No information. SOURCE marine snow. ORGANISM marine snow. REFERENCE 1 AUTHORS Delong,E.F., Franks,D.G. and Alldredge,A.L. TITLE bacterial assemblages Diversity of aggregate-attached versus free-living marine JOURNAL Limnol. Oceanog. 38, 924-934 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: L10941 library_source= marine snow associated BASE COUNT 374 a 272 c 373 g 314 t 1384 others ORIGIN 1 .......... .......... ...-..(... .)....|... .......... .......... 61 .......... .......... .......... .......... ......GAGU U(UU------ 121 ---------- --U------- )AACUC---- -----|---- ---------A AGU--GGCGG 181 ACGGGUGAGU AA-CACGUGA GA-AUUUGC- CUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GGGGGAUA ACAG------ ---------- --------AG U(GAAA)ACG 361 -CUGCUAAUA CC-CCAU-AU ---------- ---------- ---------- --------GC 421 U-------(U UCG---)--- ----AGU--- ---GAAAU-- ---------- ---------- 481 GGA------- ------(--- -------UUU A------)-- -------|-- --UUCGCCUA 541 AAGA-GAA|G -CUCGCGG|- CUGAUUA-GC UUGUUGG-UA -AG(G-UAAU GG)-CUUACC 601 AA|GGCGACG AU-CAGUAUC UG|GUUU(GA GA)GGACGAU CAGA|CACAC UGGAA(CUGA 661 GACACG)GUC CAGA-C--UC C(UA-CA)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GC- U-GACGGA|G CAAUACCGCG UGAGGGAUGA CUGCC(---U 781 AUG--)GG-U U--GUAAACC UC|UUUU-CU CAGGGAGGAA ---------- (--AUCAA-) 841 ---------- UGACG-UU-A CCU-GAGGAA -UAAACAUC- GGCU-AACU- CCGUG(CCA- 901 -GCAGCC-GC GGU---AA-) GACGGAG|GA UGCAAGUGUU AU-CCGGAAU CACUGGGC|G 961 UAAAGCGUCU GUAGGUG|GU UUGAUAAG-| UCA-ACUGUU AAAUCUUGAG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACU UCAA-AA-UC GCAGU--CGA -AAC-U-AUU -AG-A-CUAG AG-UA-UAGU 1141 A-----GAGG UAAAG|GGAA UUUCCAG-UG GAGCG(GUGA AA)UGCGUAG AUA---UUGG 1201 AAAGAACACC GAU---GGC( GAAA)GC-A- CUUUA-CUG- GGCUA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUAACACU 1321 -CAG-AGACG AAAGCUAGGG UAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG--UC-CU 1381 A-GCCGUAAA CUAUGGAU-- --AC-UA|GA UG-UUGAACA ------G--- --------(- 1441 -------AUC GA---)CC-- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---UGUGCAG UAUC-AAACG (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG A-GUAUGCAC (GCAA)GUGU GAAACUCAAA GGAAUUGACG 1621 GGGG-CC-GC ACA------- AGCGGU-GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGUUCG ACA----UG| -AU-ACG--A A------UUU CUUU-----( 1741 GAA-A-)GAA GA-AAG---U G--CC----- ----(GUUU- -----)---- -----GGAG- 1801 ---------- -----|CGUA UACA|C|AGG UGGUGCAUG| GCU-GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUG| UUUUUA-G-U 1921 UGCC------ ---------- ---------- --------U- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --UUUAU--- )--------- 2101 |GGAACUCUA AAAAGACUGC UGGU(UAUAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GUGGGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACACCC UGGGCUAC-A 2221 CACGUGCUAC AUUGGG--CG AGACAAUGAG AU----GCAA AUCU------ ---------- 2281 ----(----G CAA-)----- ---------- ----AGAC-U AGCUAAUC-U AU--AAACUC 2341 GUUCUAAGUU CGGAUUGUAG GC(--UGCAA CUC)GCCUAC AUGAAGGUGG AAUCGCU--- 2401 ---AGUAAU- CGCUGG(UC- -AGCCAU)AC AGCGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCAUACCAU GGAAGCUGG- UUAUGCCCGA 2521 AGUCAUU--- ACUCU-AGCC -(-----GUU U------)-G G-AG--GAG- GG.....-.. 2581 ..-....... .......... .......... .......... .......(.. ..)....... 2641 .......... .......-|. .......... .......... .......... .....~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS Sklt.cos_C 2717 bp RNA RNA 02-JUL-1998 DEFINITION Skeletonema costatum str. UBS-18 Univ. of British Columbia (centric diatom) -- chloroplast. ACCESSION No information KEYWORDS No information. SOURCE Skeletonema costatum str. UBS-18 Univ. of British Columbia (centric diatom) -- chloroplast. ORGANISM Skeletonema costatum. REFERENCE 1 AUTHORS Medlin,L.K., Cooper,A., Hill,C., Wrieden,S. and Wellbrock,U . TITLE Phylogenetic position of the Chromista plastids based on small subunit rRNA coding regions JOURNAL Curr. Genet. 28, 560-565 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X82154|g886705 Former RDP Sids: Sclt.cos_C legacy_attribute= cultivar (Grev.) Cleve common_name= centric diatom isolate_name= UBS-18 Univ. of British Columbia BASE COUNT 416 a 300 c 416 g 352 t 1233 others ORIGIN 1 .......... .......UUU AAA-GU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCCU--A ACACAUGCAA GUCGUACG-A G--------- -------AGU U(UU------ 121 ---------- --U------- )AACU----- -----|---- ------CU-- AGU--GGCGG 181 ACGGGUGAGU AA-CACGUGA GA-AUUUGC- CUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GGGGGAUA ACAA------ ---------- --------UU G(GAAA)CGA 361 -AUGCUAAUA CC-CCAU-AU ---------- ---------- ---------- --------GC 421 U-------(U UCG---)--- ----AGU--- ---GAAAU-- ---------- ---------- 481 GGAU------ ------(--- -----UUAUA UUU----)-- -------|-- -AUCCGCCUA 541 GAGA-GAA|G -CUCGCGG|- CUGAUUA-GC UUGUUGG-UA -AG(G-UAAG AG)-CUUACC 601 AA|GGCGACG AU-CAGUAUC UG|GUUU(GA GA)GGACGAU CAGA|CACAC UGGAA(CUGA 661 GACACG)GUC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GC- U-GACGGA|G CAAUACCGCG UGAGGGAGAC UGCCC(---U 781 AUG--)GG-U U--GUAAACC UC|UUUU-UU CAGGGAGGAA ---------- (--UCAA--) 841 ---------- UGACG-UGUA CCU-GAAGAA -UAAGCAUC- GGCU-AACU- CCGUG(CCA- 901 -GCAGCC-GC GGU---AA-) GACGGAG|GA UGCAAGUGUU AU-CCGGAAU CACUGGGC|G 961 UAAAGCGUCU GUAGGUG|GU UUAAUAAG-| UCA-ACUGUU AAAUCUUGAG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACU UCAA-AA-UC GCAGU--CGA -AAC-U-AUU -AG-A-CUAG AG-UA-UAGU 1141 A-----GAGG UAAAG|GGAA UUUCCAG-UG GAGCG(GUGA AA)UGCGUAG AUA---UUGG 1201 AAAGAACACC GAU---GGC( GAAA)GC-A- CUUUA-CUG- GGCUA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUAACACU 1321 -CAG-AGACG AAAGCUAGGG UAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG--UC-CU 1381 A-GCCGUAAA CAAUGGAU-- --AC-UA|GA UG-UUGAACA ------G--- --------(- 1441 -------AUC GA---)CC-- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---UGUGCAG UAUC-AAAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG AAGUAUGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGG-CCCGC ACA------- AGCGGU-GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGUUUG ACA----UG| -AU-ACG--A A------UUU CUUU-----( 1741 GAA-A-)GAA GA-AAG---U G--CC----- ----(GUUU- -----)---- -----GGAA- 1801 ---------- -----|CGUA UACA|C|AGG UGGUGCAUG| GCU-GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUG| UUUUUA-G-U 1921 UGCC------ ---------- ---------- --------U- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --UUUAU--- )--------- 2101 |GGAACUCUA AAAAGACUGC CGGU(UAUAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GUGGGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACACCC UGGGCUAC-A 2221 CACGUGCUAC AUUGGG--CG AGACAAUGAG AU----GCAA AUCU------ ---------- 2281 ----(----G UGA-)----- ---------- ----AGAC-U AGCUAAUC-U AU--AAACUC 2341 GUUCUAAGUU CGGAUUGUAG GC(--UGCAA CUC)GCCUAC AUGAAGGUGG AAUCGCU--- 2401 ---AGUAAU- CGCUGG(UC- -AGCUAU)AC AGCGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGAAGCUGG- -UAUACCCGA 2521 AGUCAUU--- ACCUU-AACC -(------AU U------)-G G-GGGAGGG- GG-GCCU-AA 2581 GG-UAGAAUU AGUGACUGGG GUGAAGUCGU AACAAGGUAA CCGUACU(GG AA)GGUGCGG 2641 UUGGAUCACC UCCUUU.-|. .......... .......... .......... .....~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS 2.11.2.1.2 2717 bp RNA RNA 09-JAN-1999 DEFINITION 2.11.2.1.2 EUGLENA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.11.2.1.2 EUGLENA_SUBGROUP. ORGANISM 2.11.2.1.2 EUGLENA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 2717 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~-----~ ~~~~~~~~~~ ~~~~~~---- -----~~~~~ ~~~--~~~~~ 181 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--~ 301 ~~~------- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 -~~~~~~~~~ ~~~~~~~~~~ ---------- ---------- -------~~~ ~~~~~~~~~~ 421 ~~------~~ ~~~~~-~~-- ----~~~~~~ ~~~~~~~~~~ ~~-------- ---------- 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~-~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~-~~~~~ -~--~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 721 ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 781 ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 901 ~~~~~~~-~~ ~~~---~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~|~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~------ 1081 ---~~~~~~~ ~~~~~~~-~~ ~~~~~--~~~ ~~~~~~-~~~ -~~-~-~~~~ ~~-~~~~~~~ 1141 ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~---~~~~ 1201 ~~~~~~~~~~ ~~~~--~~~~ ~~~~~~~-~- ~~~~~-~~~~ ~~~~~--~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ~~~~~~~~~~ 1321 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~--~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~-- --~~-~~~~~ ~~-~~~~~~~ ~~~~~~~--- --------~- 1441 -------~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---------- 1501 ---------- ---------- ---------- --~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 1561 -~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~---~~| ~~~-~~~~~~ ~------~~~ ~~~~~~---~ 1741 ~~~-~~~~~~ ~~-~~~~~~~ ~~~~~~~--- ----~~~~~~ -----~~--- -----~~~~~ 1801 ~~-------- -----~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~-~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ 1921 ~~~~-~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------~ --~~~~~--- ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ----~~---- ---~~~~~~~ ~~~------~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 2221 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~---~~~~ ~~~~------ ---------- 2281 ----~----~ ~~~-~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~--~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- 2401 ---~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~-- ---------- 2461 -------~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~~ ~-~~~~~~~~ ~~~~~~~-~~ 2581 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS Eugl.gr4_C 2717 bp RNA RNA 02-JUL-1998 DEFINITION Euglena gracilis. ACCESSION No information KEYWORDS No information. SOURCE Euglena gracilis. ORGANISM Euglena gracilis. REFERENCE 1 AUTHORS Orsat,B., Spielmann,A. and Stutz,E. Hallick,R.B., Hong,L., Drager,R.G., Favreau,M.R., Monfort,A., TITLE Complete sequence of Eugena gracilis chloroplast DNA JOURNAL Nucleic Acids Res. 21, 3537-3544 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X70810 legacy_attribute= rrn gene, extra common_name= euglenophycean alga BASE COUNT 424 a 273 c 420 g 370 t 1230 others ORIGIN 1 ~~~~~~~~~~ UGGAAAUGAC GAG-UU(U-G A)UCCU|UGC UCAGGGUGAA CGC-UGGCGG 61 UAUGCUU--A ACACAUGCAA GUUGAACG-A A--------- ----AUUACU A(GC------ 121 ---------- --AA------ )UAGUAAU-- -----|---- ------UU-- AGU--GGCGG 181 ACGGGUGAGU AA-UAUGUAA GA-AUCUGC- GCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGU------- --GAGGAAUA ACAG------ ---------- --------AU G(GAAA)CGU 361 -UUGCUAAUG CC-UCAUAAU ---------- ---------- -------UUA CUAGAUC-UA 421 U-------(G UGA---)--- ----GUAGCU AGUUAAA--- ---------- ---------- 481 GA-------- ------(--- -------GAA UU-----)-- -------|-- ---UCGCCUA 541 GGCA-UGA|G -CUUGCAU|- CUGAUUA-GC UUGUUGG-UG -AG(G-UAAA GG)-CUUACC 601 AA|GGCGACG AU-CAGUAGC UG|AUUU(GA GA)GGAUGAU CAGC|CACAC UGGGA(UUGA 661 GA-ACG)GAA CAGA-C--UU U(UA-CG)GA -A--GGCAG- CAGUGAGG-A AUUUUCCG-C 721 AAU-GGGC-( -GCAA)-GCC U-GACGGA|G CAAUACCGCG UGAAGGAAGA AGGCC(---U 781 UUG--)GG-U U--GUAAACU UC|UUUU-CU CAAAGAAGAA ---------- (--GAAA--) 841 ---------- UGACG-GU-A UUU-GAGGAA -UAAGCAUC- GGCU-AAUU- CCGUG(CCA- 901 -GCAGCC-GC GGU---AA-) UACGGGA|GA UGCGAGCGUU AU-CCGGAAU UAUUGGGC|G 961 UAAAGAGUUU GUAGGCG|GU CAAGUGUG-| UUU-AAUGUU AAAAGUCAAA GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACU UUGG-AA-GG GCAUU--AAA -AAC-U-GCU -AG-A-CUUG AG-UA-UGGU 1141 A-----GGGG UGAAG|GGAA UUUCCAG-UG UAGCG(GUGA AA)UGCGUAG AGA---UUGG 1201 AAAGAACACC AAU---GGC( GAAG)GC-A- CUUUU-CUA- GGCCA--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACGCU 1321 -GAG-AAACG AAAGCUGAGG GAGCAAACAG G(AUU-A-GA UAC)-CCUGG UAG--UC-UU 1381 G-GCCGUAAA CUAUGGAU-- --AC-UA|AG UG-GUGC--- ------U--- --------(- 1441 -------GAA AG---)U--- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ------GCAC UGCU-GUAGU (UAAC)ACGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGCUU (GCAC)AAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU-GGA GCAUGUGGUU UAAUUCG-(A UGCAACA)CG 1681 AAGAACCUUA CCAGGAUUUG ACA----GG| -AU-CUAGGA G------GAA GUUU-----( 1741 GAA-A-)GAA CG-CAG---U A--CC----- ----(UUCG- -----)---- -----GGUA- 1801 ---------- -----|UCUA GACA|C|AGG UGGUGCAUG| GCU-GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAAC----- ----CCUUU| UUUUUA-A-U 1921 UAAC-GC--- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( ---------- )--------U 2101 |UGUCAUUUA GAAAUACUGC UGGU(UA-UU ----)----- ---------- ---------A 2161 CCAGAGGAAG GUGAGGACGA CGUC-AA--G UCAUCAUGCC CCUUAUAUCC UGGGCUAC-A 2221 CACGUGCUAC AAUGGU--UA AGACAAUAAG UU----GCAA UUUU------ ---------- 2281 ----(----G UGA-)----- ---------- ----AAAU-G AGCUAAUC-U UA--AAACUU 2341 AGCCUAAGUU CGGAUUGUAG GC(--UGAAA CUC)GCCUAC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCUAU)AC GGCGGUGAAU AC--GUU--- ---------- 2461 -------CUC GGGCCUUGUA CACACCGCCC GUCACACCAU GGAAGUUGG- CUGUGCCCGA 2521 AGUUAUU--- AUCUU-GCCU -(-----GAA A------)-A G-AGG-GAA- AU-ACCU-AA 2581 GG-CCUGGCU GGUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGUGG 2641 CUGGAACAAU UCCC~~~-|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS Eugl.gr1_C 2717 bp RNA RNA 02-JUL-1998 DEFINITION Euglena gracilis. ACCESSION No information KEYWORDS No information. SOURCE Euglena gracilis. ORGANISM Euglena gracilis. REFERENCE 1 AUTHORS Orsat,B., Spielmann,A. and Stutz,E. Hallick,R.B., Hong,L., Drager,R.G., Favreau,M.R., Monfort,A., TITLE Complete sequence of Eugena gracilis chloroplast DNA JOURNAL Nucleic Acids Res. 21, 3537-3544 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X70810 operon= rrnA gene common_name= euglenophycean alga BASE COUNT 425 a 282 c 421 g 364 t 1225 others ORIGIN 1 ~~~~~~~~~~ UGGAAAUGAC GAG-UU(U-G A)UCCU|UGC UCAGGGUGAA CGC-UGGCGG 61 UAUGCUU--A ACACAUGCAA GUUGAACG-A A--------- ----AUUACU A(GC------ 121 ---------- --AA------ )UAGUAAU-- -----|---- ------UU-- AGU--GGCGG 181 ACGGGUGAGU AA-UAUGUAA GA-AUCUGC- GCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGC------- --GAGGAAUA ACAG------ ---------- --------AU G(GAAA)CGU 361 -UUGCUAAUG CC-UCAUAAU ---------- ---------- -------UUA CUAGAUC-UA 421 U-------(G UGA---)--- ----GUAGCU AGUUAAA--- ---------- ---------- 481 GA-------- ------(--- -------GAA UU-----)-- -------|-- ---UCGCCUA 541 GGCA-UGA|G -CUUGCAU|- CUGAUUA-GC UUGUUGG-UG -AG(G-UAAA GG)-CUUACC 601 AA|GGCGACG AU-CAGUAGC UG|AUUU(GA GA)GGAUGAU CAGC|CACAC UGGGA(UUGA 661 GA-ACG)GAA CAGA-C--UU C(UA-CG)GA -A--GGCAG- CAGUGAGG-A AUUUUCCG-C 721 AAU-GGGC-( -GCAA)-GCC U-GACGGA|G CAAUACCGCG UGAAGGAAGA CGGCC(---U 781 UUG--)GG-U U--GAAAACC UC|UUUU-CU CAAAGAAGAA ---------- (--GAAA--) 841 ---------- UGACG-GU-A UUU-GAGGAA -UAAGCAUC- GGCU-AAUU- CCGUG(CCA- 901 -GCAGCC-GC GGU---AA-) UACGGGA|GA UGCGAGCGUU AU-CCGGAAU UAUUGGGC|G 961 UAAAGAGUUU GUAGGCG|GU CAAGUGUG-| UUU-AAUGUU AAAAGUCAAA GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACU UUGG-AA-GG GCAUU--AAA -AAC-U-GCU -AG-A-CUUG AG-UA-UGGU 1141 A-----GGGG UGAAG|GGAA UUUCCAG-UG UAGCG(GUGA AA)UGCGUAG AGA---UUGG 1201 AAAGAACACC AAU---GGC( GAAG)GC-A- CUUUU-CUA- GGCCA--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACGCU 1321 -GAG-AAACG AAAGCUGAGG GAGCAAACAG G(AUU-A-GA UAC)-CCU-G UAG--UC-UU 1381 G-GCCGUAAA CUAUGGAU-- --AC-UA|AG UG-GUGC--- ------U--- --------(- 1441 -------GAA AG---)U--- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ------GCAC UGCU-GUAGU (UAAC)ACGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGCUU (GCAC)AAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU-GGA GCAUGUGGUU UAAUUCG-(A UGCAACA)CG 1681 AAGAACCUUA CCAGGAUUUG ACA----GG| -AU-CUA--- G------GAA GUUU-----( 1741 GAA-A-)GAA CG-CAG---U A--CC----- ----(UUCG- -----)---- -----GGUA- 1801 ---------- -----|UCUA GACA|C|AGG UGGUGCAUG| GCU-GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUU| UUUUUA-A-U 1921 UAAC-GC--- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( ---------- )--------U 2101 |UGUCAUUUA GAAAUACUGC UGGU(UA-UU ----)----- ---------- ---------A 2161 CCGGAGGAAG GUGAGGACGA CGUC-AA--G UCAUCAUGCC CCUUAUAUCC UGGGCUAC-A 2221 CACGUGCUAC AAUGGU--UA AGACAAUAAG UU----GCAA UUUU------ ---------- 2281 ----(----G UGA-)----- ---------- ----AAAU-G AGCUAAUC-U UA--AAACUU 2341 AGCCUAAGUU CGGAUUGUAG GC(--UGAAA CUC)GCCUAC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCUAU)AC GGCGGUGAAU AC--GUU--- ---------- 2461 -------CUC GGGCCUUGUA CACACCGCCC GUCACACCAU GGAAGUCGG- CUGUGCCCGA 2521 AGUUAUU--- AUCUU-GCCU -(-----GAA A------)-A G-AGG-GAA- AU-ACCU-AA 2581 GG-CCUGGCU GGUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGUGG 2641 CUGGAACAAC UCCC~~~-|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS Eugl.gr2_C 2717 bp RNA RNA 02-JUL-1998 DEFINITION Euglena gracilis. ACCESSION No information KEYWORDS No information. SOURCE Euglena gracilis. ORGANISM Euglena gracilis. REFERENCE 1 AUTHORS Orsat,B., Spielmann,A. and Stutz,E. Hallick,R.B., Hong,L., Drager,R.G., Favreau,M.R., Monfort,A., TITLE Complete sequence of Eugena gracilis chloroplast DNA JOURNAL Nucleic Acids Res. 21, 3537-3544 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X70810 operon= rrnB gene common_name= euglenophycean alga BASE COUNT 425 a 282 c 421 g 364 t 1225 others ORIGIN 1 ~~~~~~~~~~ UGGAAAUGAC GAG-UU(U-G A)UCCU|UGC UCAGGGUGAA CGC-UGGCGG 61 UAUGCUU--A ACACAUGCAA GUUGAACG-A A--------- ----AUUACU A(GC------ 121 ---------- --AA------ )UAGUAAU-- -----|---- ------UU-- AGU--GGCGG 181 ACGGGUGAGU AA-UAUGUAA GA-AUCUGC- GCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGC------- --GAGGAAUA ACAG------ ---------- --------AU G(GAAA)CGU 361 -UUGCUAAUG CC-UCAUAAU ---------- ---------- -------UUA CUAGAUC-UA 421 U-------(G UGA---)--- ----GUAGCU AGUUAAA--- ---------- ---------- 481 GA-------- ------(--- -------GAA UU-----)-- -------|-- ---UCGCCUA 541 GGCA-UGA|G -CUUGCAU|- CUGAUUA-GC UUGUUGG-UG -AG(G-UAAA GG)-CUUACC 601 AA|GGCGACG AU-CAGUAGC UG|AUUU(GA GA)GGAUGAU CAGC|CACAC UGGGA(UUGA 661 GA-ACG)GAA CAGA-C--UU C(UA-CG)GA -A--GGCAG- CAGUGAGG-A AUUUUCCG-C 721 AAU-GGGC-( -GCAA)-GCC U-GACGGA|G CAAUACCGCG UGAAGGAAGA CGGCC(---U 781 UUG--)GG-U U--GAAAACC UC|UUUU-CU CAAAGAAGAA ---------- (--GAAA--) 841 ---------- UGACG-GU-A UUU-GAGGAA -UAAGCAUC- GGCU-AAUU- CCGUG(CCA- 901 -GCAGCC-GC GGU---AA-) UACGGGA|GA UGCGAGCGUU AU-CCGGAAU UAUUGGGC|G 961 UAAAGAGUUU GUAGGCG|GU CAAGUGUG-| UUU-AAUGUU AAAAGUCAAA GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACU UUGG-AA-GG GCAUU--AAA -AAC-U-GCU -AG-A-CUUG AG-UA-UGGU 1141 A-----GGGG UGAAG|GGAA UUUCCAG-UG UAGCG(GUGA AA)UGCGUAG AGA---UUGG 1201 AAAGAACACC AAU---GGC( GAAG)GC-A- CUUUU-CUA- GGCCA--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACGCU 1321 -GAG-AAACG AAAGCUGAGG GAGCAAACAG G(AUU-A-GA UAC)-CCU-G UAG--UC-UU 1381 G-GCCGUAAA CUAUGGAU-- --AC-UA|AG UG-GUGC--- ------U--- --------(- 1441 -------GAA AG---)U--- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ------GCAC UGCU-GUAGU (UAAC)ACGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGCUU (GCAC)AAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU-GGA GCAUGUGGUU UAAUUCG-(A UGCAACA)CG 1681 AAGAACCUUA CCAGGAUUUG ACA----GG| -AU-CUA--- G------GAA GUUU-----( 1741 GAA-A-)GAA CG-CAG---U A--CC----- ----(UUCG- -----)---- -----GGUA- 1801 ---------- -----|UCUA GACA|C|AGG UGGUGCAUG| GCU-GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUU| UUUUUA-A-U 1921 UAAC-GC--- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( ---------- )--------U 2101 |UGUCAUUUA GAAAUACUGC UGGU(UA-UU ----)----- ---------- ---------A 2161 CCGGAGGAAG GUGAGGACGA CGUC-AA--G UCAUCAUGCC CCUUAUAUCC UGGGCUAC-A 2221 CACGUGCUAC AAUGGU--UA AGACAAUAAG UU----GCAA UUUU------ ---------- 2281 ----(----G UGA-)----- ---------- ----AAAU-G AGCUAAUC-U UA--AAACUU 2341 AGCCUAAGUU CGGAUUGUAG GC(--UGAAA CUC)GCCUAC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCUAU)AC GGCGGUGAAU AC--GUU--- ---------- 2461 -------CUC GGGCCUUGUA CACACCGCCC GUCACACCAU GGAAGUCGG- CUGUGCCCGA 2521 AGUUAUU--- AUCUU-GCCU -(-----GAA A------)-A G-AGG-GAA- AU-ACCU-AA 2581 GG-CCUGGCU GGUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGUGG 2641 CUGGAACAAC UCCC~~~-|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS Eugl.gr3_C 2717 bp RNA RNA 02-JUL-1998 DEFINITION Euglena gracilis. ACCESSION No information KEYWORDS No information. SOURCE Euglena gracilis. ORGANISM Euglena gracilis. REFERENCE 1 AUTHORS Orsat,B., Spielmann,A. and Stutz,E. Hallick,R.B., Hong,L., Drager,R.G., Favreau,M.R., Monfort,A., TITLE Complete sequence of Eugena gracilis chloroplast DNA JOURNAL Nucleic Acids Res. 21, 3537-3544 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X70810 operon= rrnC gene common_name= euglenophycean alga BASE COUNT 425 a 282 c 421 g 364 t 1225 others ORIGIN 1 ~~~~~~~~~~ UGGAAAUGAC GAG-UU(U-G A)UCCU|UGC UCAGGGUGAA CGC-UGGCGG 61 UAUGCUU--A ACACAUGCAA GUUGAACG-A A--------- ----AUUACU A(GC------ 121 ---------- --AA------ )UAGUAAU-- -----|---- ------UU-- AGU--GGCGG 181 ACGGGUGAGU AA-UAUGUAA GA-AUCUGC- GCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGC------- --GAGGAAUA ACAG------ ---------- --------AU G(GAAA)CGU 361 -UUGCUAAUG CC-UCAUAAU ---------- ---------- -------UUA CUAGAUC-UA 421 U-------(G UGA---)--- ----GUAGCU AGUUAAA--- ---------- ---------- 481 GA-------- ------(--- -------GAA UU-----)-- -------|-- ---UCGCCUA 541 GGCA-UGA|G -CUUGCAU|- CUGAUUA-GC UUGUUGG-UG -AG(G-UAAA GG)-CUUACC 601 AA|GGCGACG AU-CAGUAGC UG|AUUU(GA GA)GGAUGAU CAGC|CACAC UGGGA(UUGA 661 GA-ACG)GAA CAGA-C--UU C(UA-CG)GA -A--GGCAG- CAGUGAGG-A AUUUUCCG-C 721 AAU-GGGC-( -GCAA)-GCC U-GACGGA|G CAAUACCGCG UGAAGGAAGA CGGCC(---U 781 UUG--)GG-U U--GAAAACC UC|UUUU-CU CAAAGAAGAA ---------- (--GAAA--) 841 ---------- UGACG-GU-A UUU-GAGGAA -UAAGCAUC- GGCU-AAUU- CCGUG(CCA- 901 -GCAGCC-GC GGU---AA-) UACGGGA|GA UGCGAGCGUU AU-CCGGAAU UAUUGGGC|G 961 UAAAGAGUUU GUAGGCG|GU CAAGUGUG-| UUU-AAUGUU AAAAGUCAAA GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACU UUGG-AA-GG GCAUU--AAA -AAC-U-GCU -AG-A-CUUG AG-UA-UGGU 1141 A-----GGGG UGAAG|GGAA UUUCCAG-UG UAGCG(GUGA AA)UGCGUAG AGA---UUGG 1201 AAAGAACACC AAU---GGC( GAAG)GC-A- CUUUU-CUA- GGCCA--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACGCU 1321 -GAG-AAACG AAAGCUGAGG GAGCAAACAG G(AUU-A-GA UAC)-CCU-G UAG--UC-UU 1381 G-GCCGUAAA CUAUGGAU-- --AC-UA|AG UG-GUGC--- ------U--- --------(- 1441 -------GAA AG---)U--- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ------GCAC UGCU-GUAGU (UAAC)ACGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGCUU (GCAC)AAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU-GGA GCAUGUGGUU UAAUUCG-(A UGCAACA)CG 1681 AAGAACCUUA CCAGGAUUUG ACA----GG| -AU-CUA--- G------GAA GUUU-----( 1741 GAA-A-)GAA CG-CAG---U A--CC----- ----(UUCG- -----)---- -----GGUA- 1801 ---------- -----|UCUA GACA|C|AGG UGGUGCAUG| GCU-GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUU| UUUUUA-A-U 1921 UAAC-GC--- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( ---------- )--------U 2101 |UGUCAUUUA GAAAUACUGC UGGU(UA-UU ----)----- ---------- ---------A 2161 CCGGAGGAAG GUGAGGACGA CGUC-AA--G UCAUCAUGCC CCUUAUAUCC UGGGCUAC-A 2221 CACGUGCUAC AAUGGU--UA AGACAAUAAG UU----GCAA UUUU------ ---------- 2281 ----(----G UGA-)----- ---------- ----AAAU-G AGCUAAUC-U UA--AAACUU 2341 AGCCUAAGUU CGGAUUGUAG GC(--UGAAA CUC)GCCUAC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCUAU)AC GGCGGUGAAU AC--GUU--- ---------- 2461 -------CUC GGGCCUUGUA CACACCGCCC GUCACACCAU GGAAGUCGG- CUGUGCCCGA 2521 AGUUAUU--- AUCUU-GCCU -(-----GAA A------)-A G-AGG-GAA- AU-ACCU-AA 2581 GG-CCUGGCU GGUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGUGG 2641 CUGGAACAAC UCCC~~~-|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS 2.11.2.1.3 2717 bp RNA RNA 09-JAN-1999 DEFINITION 2.11.2.1.3 OCHROSPHAERA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.11.2.1.3 OCHROSPHAERA_SUBGROUP. ORGANISM 2.11.2.1.3 OCHROSPHAERA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 2717 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~-----~ ~~~~~~~~~~ ~~~~~~---- -----~~~~~ ~~~--~~~~~ 181 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--~ 301 ~~~------- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 -~~~~~~~~~ ~~~~~~~~~~ ---------- ---------- -------~~~ ~~~~~~~~~~ 421 ~~------~~ ~~~~~-~~-- ----~~~~~~ ~~~~~~~~~~ ~~-------- ---------- 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~-~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~-~~~~~ -~--~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 721 ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 781 ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 901 ~~~~~~~-~~ ~~~---~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~|~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~------ 1081 ---~~~~~~~ ~~~~~~~-~~ ~~~~~--~~~ ~~~~~~-~~~ -~~-~-~~~~ ~~-~~~~~~~ 1141 ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~---~~~~ 1201 ~~~~~~~~~~ ~~~~--~~~~ ~~~~~~~-~- ~~~~~-~~~~ ~~~~~--~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ~~~~~~~~~~ 1321 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~--~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~-- --~~-~~~~~ ~~-~~~~~~~ ~~~~~~~--- --------~- 1441 -------~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---------- 1501 ---------- ---------- ---------- --~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 1561 -~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~---~~| ~~~-~~~~~~ ~------~~~ ~~~~~~---~ 1741 ~~~-~~~~~~ ~~-~~~~~~~ ~~~~~~~--- ----~~~~~~ -----~~--- -----~~~~~ 1801 ~~-------- -----~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~-~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ 1921 ~~~~-~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------~ --~~~~~--- ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ----~~---- ---~~~~~~~ ~~~------~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 2221 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~---~~~~ ~~~~------ ---------- 2281 ----~----~ ~~~-~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~--~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- 2401 ---~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~-- ---------- 2461 -------~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~~ ~-~~~~~~~~ ~~~~~~~-~~ 2581 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS Ochs.nea_C 2717 bp RNA RNA 02-JUL-1998 DEFINITION Ochrosphaera neapolitana. ACCESSION No information KEYWORDS No information. SOURCE Ochrosphaera neapolitana. ORGANISM Ochrosphaera neapolitana. REFERENCE 1 AUTHORS Huss,V.A.R. and Engel,H. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: X80390|g516142 common_name= haptophyte BASE COUNT 394 a 310 c 434 g 340 t 1239 others ORIGIN 1 ~~~~~~~~~~ UGCCUGCAGA GAG-UU(Y-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCUU--A ACACAUGCAA GUCGGACG-A G--------- --------AG U(UU------ 121 ---------- -UUA------ )ACU------ -----|---- ------CU-- AGU--GGCGA 181 ACGGGUGCGU AA-UACGUGA GA-AUCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GGGGAAUA ACUG------ ---------- --------UU G(GAAA)CGA 361 -YAGCUAAAU CC-CCAU-AU ---------- ---------- ---------- --------GC 421 C-------(G AGA---)--- ----GGU--- ---GAAAU-- ---------- ---------- 481 AGU------- ------(--- -------UUA C------)-- -------|-- --ACUGCCUA 541 AGGA-UGA|G -CUCGCGC|- CUGAUUA-GC UUGUUGG-UA -AG(G-UAAC GG)-CUUACC 601 AA|GGCCACG AU-CAGUAGC UG|GUUU(GA GA)GAAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UC-CG)GG -A--GGCAG- CAGUGAGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUACCGCG UGAGGGAUGA AGGAU(---U 781 UUG--)GU-C U--GUAAACC UC|UUUU-CU CAAGAAAGAA ---------- (--GUUC--) 841 ---------- UGACG-GU-A CUU-GAGGAA -UAAGCAUC- GGCU-AACU- CCGUG(CCA- 901 -GCAGCC-GC GGU---AA-) UACGGGG|GA UGCAAGCGUU AU-CCGGAAU CAUUGGGC|G 961 UAAAGCGCCU GUAGGUU|GU CUAAUAAG-| UCU-GUUGUU AAAGACUAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CUGG-GA-AA GCGAU--GGA -AAC-U-AAU -AG-G-CUUG AG-UA-UGGU 1141 A-----GGGG UAGAG|GGAA UUUCUAG-UG UAGCG(GUGA AA)UGCGUAG AUA---UUAG 1201 AAAGAACACC GGU---GGC( GAAA)GC-G- CUCUA-CUG- GGCCA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACACU 1321 -GAG-AGGCG AAAGCUAGGG GAGCAAAAGG G(AUU-A-GA UAC)-CCCUG UAG--UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC-UA|GG UG-UUGUAU- ---------- --------(- 1441 --------UA UU---)---- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ----GUACAG UAUC-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGCUC (GCAA)GGGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU-GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UA| -CU-ACA--G A------UCU UUUU-----( 1741 GAG-A-)CGA AA-GAG---U G--CC----- ----(UUYG- -----)---- -----GGAA- 1801 ---------- -----|UGUA GAUA|C|AGG UGGUGCAUG| GCU-GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UUUUUA-G-U 1921 UGCC-A--A- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --UUUAU--- )-------UG 2101 |GGAUCUCUA GAGAGACUGC CGGU(GAUAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUAUGUCC UGGGCCAC-A 2221 CACGUGCUAC AAUGAC--AA AGACAAAGAG UC----GCAA AUUC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GAAC-U AGCUAAUC-U CAU-AAACUU 2341 UGUCCAAGUU CGGAUUGUAG GC(--UGCAA CUC)GCCUAC AUGAAGUUGG AAUCGCU--- 2401 ---AGUAAU- CGCUGG(UC- -AGC-AU)AC AGCGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGGAGCUGG- UCAUACCCAA 2521 CACCGUU--- AGUCU-AACC -(-----AUU U------)-G G-AGG-ACG- AC-GUCU-AA 2581 GG-UAGGGCU AGUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGNGG 2641 NUGGAUCACC UCCUUG~-|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS 2.11.2.1.4 2717 bp RNA RNA 09-JAN-1999 DEFINITION 2.11.2.1.4 PYRENOMONAS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.11.2.1.4 PYRENOMONAS_SUBGROUP. ORGANISM 2.11.2.1.4 PYRENOMONAS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 2717 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~-----~ ~~~~~~~~~~ ~~~~~~---- -----~~~~~ ~~~--~~~~~ 181 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--~ 301 ~~~------- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 -~~~~~~~~~ ~~~~~~~~~~ ---------- ---------- -------~~~ ~~~~~~~~~~ 421 ~~------~~ ~~~~~-~~-- ----~~~~~~ ~~~~~~~~~~ ~~-------- ---------- 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~-~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~-~~~~~ -~--~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 721 ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 781 ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 901 ~~~~~~~-~~ ~~~---~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~|~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~------ 1081 ---~~~~~~~ ~~~~~~~-~~ ~~~~~--~~~ ~~~~~~-~~~ -~~-~-~~~~ ~~-~~~~~~~ 1141 ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~---~~~~ 1201 ~~~~~~~~~~ ~~~~--~~~~ ~~~~~~~-~- ~~~~~-~~~~ ~~~~~--~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ~~~~~~~~~~ 1321 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~--~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~-- --~~-~~~~~ ~~-~~~~~~~ ~~~~~~~--- --------~- 1441 -------~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---------- 1501 ---------- ---------- ---------- --~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 1561 -~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~---~~| ~~~-~~~~~~ ~------~~~ ~~~~~~---~ 1741 ~~~-~~~~~~ ~~-~~~~~~~ ~~~~~~~--- ----~~~~~~ -----~~--- -----~~~~~ 1801 ~~-------- -----~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~-~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ 1921 ~~~~-~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------~ --~~~~~--- ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ----~~---- ---~~~~~~~ ~~~------~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 2221 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~---~~~~ ~~~~------ ---------- 2281 ----~----~ ~~~-~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~--~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- 2401 ---~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~-- ---------- 2461 -------~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~~ ~-~~~~~~~~ ~~~~~~~-~~ 2581 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS Crpm.phi_C 2717 bp RNA RNA 02-JUL-1998 DEFINITION Cryptomonas phi str. F (2-flagellae cryptomonad) -- chloroplast. ACCESSION No information KEYWORDS No information. SOURCE Cryptomonas phi str. F (2-flagellae cryptomonad) -- chloroplast. ORGANISM Cryptomonas phi. REFERENCE 1 AUTHORS Douglas,S.E. and Turner,S. TITLE cyanobacterium-like ancestor Molecular evidence for the origin of plastids from a JOURNAL J. Mol. Evol. 33, 267-273 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: S73904 legacy_attribute= clone pBSc15.5 common_name= 2-flagellae cryptomonad isolate_name= F BASE COUNT 414 a 311 c 432 g 336 t 1224 others ORIGIN 1 ~~~~~~~~~~ AAAUCAUGGA GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCUU--A ACACAUGCAA GUCGUACG-A A--------- -------AGU U(UU------ 121 ---------- --U------- )AACU----- -----|---- ------UU-- AGU--GGCGG 181 ACGGGUGAGU AA-CACGUGA GA-AUCUAC- CCUUAGG--- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GGGGGAUA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CU-CCAU-AU ---------- ---------- ---------- --------GC 421 U-------(G AAG---)--- ----AGU--- ---GAAA--- ---------- ---------- 481 GG-------- ------(--- -------GAA A------)-- -------|-- ---CCACCUA 541 AGGA-AGA|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UA -GG(G-UAAG GG)-CCUACC 601 AA|GGCGACG AU-CAGUAGC UG|GUUU(GA GA)GGACGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GCAA)-GCC U-GACGGA|G CAAUACCGCG UGAGGGAUGA AGGCC(---U 781 GUG--)GG-U U--GUAAACC UC|UUUU-CU CAAGGAAGAA ---------- (--GUUC--) 841 ---------- UGACG-GU-A CUU-GAGGAA -UAAGCAUC- GGCU-AACU- CUGUG(CCA- 901 -GCAGCC-GC GGU---AA-) UACAGAG|GA UGCAAGCGUU AU-CCGGAAU UACUGGGC|A 961 UAAAGCGUCU GUAGGUU|GU UUAGUAAG-| UCU-GCUGUU AAAGACUAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CUAG-AA-AA GCAGU--GGA -AAC-U-GCU -AG-A-CUUG AG-UG-UGGU 1141 A-----GAGG UAGAG|GGAA UUCCUAG-UG UAGCG(GUGA AA)UGCGUAG AUA---UUAG 1201 GAAGAACACC AAU---GGC( GAAA)GC-A- CUUUA-CUG- GGCCA--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- AACUGACACU 1321 -GAG-AGACG ACAGCUAGGG GAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG--UC-CU 1381 A-GCCGUAAA CUAUGGAU-- --AC-UA|GA UG-UUGUACG ------U--- --------(- 1441 -------AUU AA---)CC-- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---CGUACAG UAUC-GUAGC (UAAG)GCGU 1561 -UAAGUAUCC |C|GCCUGGG AAGUACGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU-GGA GUAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGUUUG ACA----UG| -UC-ACA--A A------UUU UCUU-----( 1741 GAA-A-)AAG AA-AAG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|UGUG AACA|C|AGG UGGUGCAUG| GCU-GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG UAACCCUUG| UUUUUA-G-U 1921 UGCC-AUCA- ---------- ---------- --------U- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --UAAGU--- )-------UG 2101 |GGCACUUUA AAAAGACUGC CGGU(GAUAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GUGAGGACGA CGUC-AA--G UCAGCAUGCC CCUUACACUC UGGGCUAC-A 2221 CACGUACUAC AAUGGU--CG AGACAAAAAG UC----GCAA ACUU------ ---------- 2281 ----(----G UGA-)----- ---------- ----AAGU-A AGCUAAUC-U UAU-AAACUC 2341 GAUCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGUUGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCUAU)AC GGCGGUGAAU CC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAU GGAAGCUAG- UCAUACCCAA 2521 AGUCGUU--- ACCUU-AACC -(-----AUU C------)-G G-AGG-GGG- GC-GCCU-AA 2581 GG-UAGGGUU AGUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUUA~-|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS 2.11.2.2 2717 bp RNA RNA 09-JAN-1999 DEFINITION 2.11.2.2 GREEN_PLANT_CHLOROPLASTS. ACCESSION No information KEYWORDS No information. SOURCE 2.11.2.2 GREEN_PLANT_CHLOROPLASTS. ORGANISM 2.11.2.2 GREEN_PLANT_CHLOROPLASTS. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 2717 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~-----~ ~~~~~~~~~~ ~~~~~~---- -----~~~~~ ~~~--~~~~~ 181 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--~ 301 ~~~------- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 -~~~~~~~~~ ~~~~~~~~~~ ---------- ---------- -------~~~ ~~~~~~~~~~ 421 ~~------~~ ~~~~~-~~-- ----~~~~~~ ~~~~~~~~~~ ~~-------- ---------- 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~-~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~-~~~~~ -~--~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 721 ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 781 ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 901 ~~~~~~~-~~ ~~~---~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~|~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~------ 1081 ---~~~~~~~ ~~~~~~~-~~ ~~~~~--~~~ ~~~~~~-~~~ -~~-~-~~~~ ~~-~~~~~~~ 1141 ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~---~~~~ 1201 ~~~~~~~~~~ ~~~~--~~~~ ~~~~~~~-~- ~~~~~-~~~~ ~~~~~--~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ~~~~~~~~~~ 1321 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~--~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~-- --~~-~~~~~ ~~-~~~~~~~ ~~~~~~~--- --------~- 1441 -------~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---------- 1501 ---------- ---------- ---------- --~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 1561 -~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~---~~| ~~~-~~~~~~ ~------~~~ ~~~~~~---~ 1741 ~~~-~~~~~~ ~~-~~~~~~~ ~~~~~~~--- ----~~~~~~ -----~~--- -----~~~~~ 1801 ~~-------- -----~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~-~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ 1921 ~~~~-~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------~ --~~~~~--- ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ----~~---- ---~~~~~~~ ~~~------~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 2221 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~---~~~~ ~~~~------ ---------- 2281 ----~----~ ~~~-~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~--~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- 2401 ---~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~-- ---------- 2461 -------~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~~ ~-~~~~~~~~ ~~~~~~~-~~ 2581 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS 2.11.2.2.1 2717 bp RNA RNA 09-JAN-1999 DEFINITION 2.11.2.2.1 GREEN_ALGA_CHLOROPLASTS. ACCESSION No information KEYWORDS No information. SOURCE 2.11.2.2.1 GREEN_ALGA_CHLOROPLASTS. ORGANISM 2.11.2.2.1 GREEN_ALGA_CHLOROPLASTS. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 2717 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~-----~ ~~~~~~~~~~ ~~~~~~---- -----~~~~~ ~~~--~~~~~ 181 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--~ 301 ~~~------- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 -~~~~~~~~~ ~~~~~~~~~~ ---------- ---------- -------~~~ ~~~~~~~~~~ 421 ~~------~~ ~~~~~-~~-- ----~~~~~~ ~~~~~~~~~~ ~~-------- ---------- 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~-~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~-~~~~~ -~--~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 721 ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 781 ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 901 ~~~~~~~-~~ ~~~---~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~|~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~------ 1081 ---~~~~~~~ ~~~~~~~-~~ ~~~~~--~~~ ~~~~~~-~~~ -~~-~-~~~~ ~~-~~~~~~~ 1141 ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~---~~~~ 1201 ~~~~~~~~~~ ~~~~--~~~~ ~~~~~~~-~- ~~~~~-~~~~ ~~~~~--~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ~~~~~~~~~~ 1321 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~--~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~-- --~~-~~~~~ ~~-~~~~~~~ ~~~~~~~--- --------~- 1441 -------~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---------- 1501 ---------- ---------- ---------- --~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 1561 -~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~---~~| ~~~-~~~~~~ ~------~~~ ~~~~~~---~ 1741 ~~~-~~~~~~ ~~-~~~~~~~ ~~~~~~~--- ----~~~~~~ -----~~--- -----~~~~~ 1801 ~~-------- -----~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~-~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ 1921 ~~~~-~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------~ --~~~~~--- ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ----~~---- ---~~~~~~~ ~~~------~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 2221 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~---~~~~ ~~~~------ ---------- 2281 ----~----~ ~~~-~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~--~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- 2401 ---~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~-- ---------- 2461 -------~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~~ ~-~~~~~~~~ ~~~~~~~-~~ 2581 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS Pyrm.par_C 2717 bp RNA RNA 02-JUL-1998 DEFINITION Pyramimonas parkeae str. NIES 254 (green alga) -- chloroplast. ACCESSION No information KEYWORDS No information. SOURCE Pyramimonas parkeae str. NIES 254 (green alga) -- chloroplast. ORGANISM Pyramimonas parkeae. REFERENCE 1 AUTHORS ,H. Kim,Y.-S., Oyaizu,H., Matsumoto,S., Watanabe,M.M. and Nozaki TITLE Chlamydomonas parkeae (Chlorophyta): molecular phylogeny of a green alga with a peculiar pigment composition Chloroplast small-subunit ribosomal RNA gene sequence from JOURNAL Eur. J. Phycol. 29, 213-217 (1994) STANDARD No information COMMENTS common_name= green alga isolate_name= NIES 254 NB: bases 181-221 not aligned BASE COUNT 393 a 321 c 451 g 327 t 1225 others ORIGIN 1 .......... .......... ...-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGAACG-G ---------- UGUUUUUUUU C(UU------ 121 ---------- --CG------ )GAGAAAAAU CU---|---- -------U-- UCU--U-CGG 181 ACGGGUGAGU AA-CGCGUAA GA-AGCCUA- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GGGGGACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CC-CUAU-AA ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGU--- ---UAAAU-- ---------- ---------- 481 CG--UUUUUA AAAUGA(--- ---GGAGUUA AAUCGAA)-- -UUAU-A|AA AUUUGGCCUA 541 AGGA-GGG|G -CUUGCGU|- CUGAUUA-GU UAGUUGG-CA -GG(G-UAAA GG)-CCUACC 601 AA|GGCAACG AU-CAGUAGC UG|GUUU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|C GAAUGCCGCG UGGAGGAAGA CGGCC(---G 781 GUG--)GG-U U--GUAAACU CC|UUUU-CU CAGAGAAGAA ---------- (--GUUC--) 841 ---------- UGACG-GU-A UCU-GAGGAA -UAAGCAUC- GGCU-AACU- CCGUG(CCA- 901 -GCAGCC-GC GGU---AA-) UACGGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GU UUCGUAAG-| UCC-GCUGUG AAAGAGUCCA GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACU GUAG-AU-CC GCAGU--GGA -AAC-U-ACG -AG-A-CUGG AG-UG-UGGU 1141 A-----GGGG CAGAG|GGAA UUCCCGG-UG UAGCG(GUGA AA)UGCGUAG AUA---UCGG 1201 GAGGAACACC AAU---GGC( G...)..-.- .....-.... UACCA--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 -GAG-AGACG AAAGCUAAGG GAGCGAAAAG G(AUU-A-GA UAC)-CCUUG UAG--UC-UU 1381 A-GCCGUAAA CGAUGGAU-- --AC-UA|AG UG-CUGCGAG -----AG--- --------(- 1441 -------UUU UU---)AUG- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---CUUGCAC UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUAUGCUC (GCAA)GGGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU-GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-GCG--A A------UUU UUCA-----( 1741 GAG-A-)UGA GA-AAG---U G--NC----- ----(UUCG- -----)---- -----G-AA- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGCAUG| GCU-GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUUA| UCCUUA-G-U 1921 ACUA-A-GCC ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --UAAUA--- )------GGU 2101 |UAGU--CUA AAGAGACUGC CAGU(GAUAA ----)----- ---------- ---------A 2161 CUGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACGCCC UGGGCGAC-A 2221 GACGUGCUAC AAUGGC--CG GGACAAAGAG AU----GCGA UCUC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GAGU-A AGCUAAGC-U CAA-AAACCC 2341 GGUCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGGUGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -A-CGAU)AC GGCGGUGAAA CU--GUA--- ---------- 2461 -------CCC GUGCCUUGUA CACACCGCCC GUCACACCUU GAGAGAGGG- UUCAUGCCAA 2521 AGUUGUU--- ACCCU-AACC -(-----UUC G------)-G G-AGG-GGG- AU-GCCU-AA 2581 GC-AGGUCUG CGCGACUGAG GUGAAGUCGU AACAAGGUAG .......(.. ..)..AGUCC 2641 CUGGAUCACC UCCUUC~-|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS Clmy.par_C 2717 bp RNA RNA 02-JUL-1998 DEFINITION Chlamydomonas parkeae str. NIES-440 (green alga) -- chloroplast. ACCESSION No information KEYWORDS No information. SOURCE Chlamydomonas parkeae str. NIES-440 (green alga) -- chloroplast. ORGANISM Chlamydomonas parkeae. REFERENCE 1 AUTHORS ,H. Kim,Y.-S., Oyaizu,H., Matsumoto,S., Watanabe,M.M. and Nozaki TITLE Chlamydomonas parkeae (Chlorophyta): molecular phylogeny of a green alga with a peculiar pigment composition Chloroplast small-subunit ribosomal RNA gene sequence from JOURNAL Eur. J. Phycol. 29, 213-217 (1994) STANDARD No information COMMENTS common_name= green alga isolate_name= NIES-440 BASE COUNT 359 a 288 c 382 g 293 t 1395 others ORIGIN 1 .......... .......... .AG-UU(U-G A)UACU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCCU--A ACACAUGCAA GUCGAACG-A A--------- ----UUAAUG G(GC------ 121 ---------- --AA------ )CUAUUAG-- -----|---- ------UU-- AGU--GGCGG 181 ACGGGUGCGU AA-CGCGUAA GA-ACCUAC- CUUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------U 301 GGA------- --GGGGGAUA ACUA------ ---------- --------CG G(GAAA)CUG 361 -UUGCUAAUA CC-CCAUAAU ---------- ---------- -------... .......... 421 ..------(. .....-).-- ----...... .......... ..-------- ---------- 481 .......... ......(... .......... .......).. .......|.. .......... 541 ....-...|. -......U|- CUGAUUA-GC UAGUUGG-UG -GG(G-UAAA AG)-CCUCCC 601 AA|GGCCACG AU-CAGUAGC UG|GUUU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGAGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUACCGCG UGAGGGAAGA AGGCC(---U 781 GUG--)GG-U C--GUAAACC UC|UUUN-GG GAGAGAAGAA ---------- (--UAAA--) 841 ---------- UGACA-AU-A CCU-GAAGAA -UAAGCUCC- GGCU-AACU- CUGUG(CCA- 901 -GCAGCC-GC GGU---AA-) UACAGAG|GG AGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GU CUGAAAAG-| UCU-GCUGUC AAAUACCCAG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC UUGG-GC-AG GCAGU--AG- GUAC-U-UUC -AG-A-CUUG AG-UG-CGGU 1141 A-----GAGG UAGUG|GGAA UCCCUAG-CG UAACA(GUGA AA)UGUGUAG AUU---UUAG 1201 GGAGAACACC AGC---GGC( GAAG)G.-.- .....-.... .....--... .......... 1261 .......... .......... .......... .........- ---------- ...UGACACU 1321 -GAG-AGACG AAAGC..... .......AAG G(AUU-A-GA UAC)-CCUUG ...--..... 1381 ...CUGUAAA CGAUGGAA-- --AC-UA|AG UG-CUGCCGA ---------- --------(- 1441 ---------- -----)---- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ----AUGCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUUUCC |C|GCCUGGG GAGUAUGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU-GGA UUAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGUUUG ACA----UG| -CU-CAG--C A------AUU UUCC-----( 1741 GAG-A-)UGG AU-GAG---U G-CCA----- ----(GAAA- -----)---- -----UGAG- 1801 ---------- -----|CUGA GUCA|C|AGG UGGUGCAUG| GCU-GUCGUC A|-G-CUCGU 1861 |GCG(UUGA) CGUGUAUGG( UUAAGU)CCU GCAACGAGCG CAACCCUCG| UCUUUA-G-U 1921 UAAA------ ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( ---------- )--------- 2101 |--UACUCUA AAGAGACUGC CAGU(GC-AA ----)----- ---------- ---------A 2161 CUGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACACCC UGGGCUAC-A 2221 CACGUAAUAC AAUGGU--UG GG........ ...---.... ....------ ---------- 2281 ----(----. ...-)-.... .......... .........C AGCAAAUC-U GUU-AAACCC 2341 AACCUCAGUU CGGAUGGUAG GC(--UGCAA CUC)GCCUGC AUGAAGUCGG AAUUGUU--- 2401 ---AGUAAU- CGCCAA(UC- -AGC-AU)GU GGCGGUGAAU AC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACAUCAA GAAAGGAGA- UUCCUCCCAA 2521 AGCCAGU--- AGUCU-AACC -(-----GUU U------)-G G-AAG-GCG- CU-GUCA-AA 2581 GG-AUGGGUU UCUGAUCAUG .......... .......... .......(.. ..)..AGUCC 2641 CUGGAUCACC UCCUUC~-|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS Yamg.uni_C 2717 bp RNA RNA 02-JUL-1998 DEFINITION Yamagishiella unicocca str. X-441 (green alga) -- chloroplast. ACCESSION No information KEYWORDS No information. SOURCE Yamagishiella unicocca str. X-441 (green alga) -- chloroplast. ORGANISM Yamagishiella unicocca. REFERENCE 1 AUTHORS ,H. Kim,Y.-S., Oyaizu,H., Matsumoto,S., Watanabe,M.M. and Nozaki TITLE Chlamydomonas parkeae (Chlorophyta): molecular phylogeny of a green alga with a peculiar pigment composition Chloroplast small-subunit ribosomal RNA gene sequence from JOURNAL Eur. J. Phycol. 29, 213-217 (1994) STANDARD No information COMMENTS common_name= green alga isolate_name= X-441 BASE COUNT 383 a 332 c 441 g 301 t 1260 others ORIGIN 1 .......... .......... ...-..(... .)....|... ...GGACGAA CGC-UGGCGG 61 GCUGCCU--A ACACAUGCAA GUCGAACG-A G--------- ----CAUUUC A(UUCAUUUC 121 UUCCGGGGAA A--------- )-GAAGUG-- -U---|---- ------GU-- AGU--GGCGG 181 ACGGGUGCGU AA-CGCGUAA GA-ACCUAC- CUAU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GGGGGAUA ACAU------ ---------- --------UG G(GAAA)CUG 361 -UUGCUAAUA CCCCCUAAAA ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGU--- ---GAAA--- ---------- ---------- 481 GGU------- ------(--- -------GUA AA-----)-- -------|-- --ACCACCGA 541 UAGA-GGG|G -CUUGCGU|- CUGAUUA-GC UAGUUGG-UG -GG(G-UAAC GG)-CCUCCC 601 AA|GGCCACG AU-CAGUAGC UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGU-GAGGA AUUUUUCG-C 721 AAU-GGGC-( -GCAA)-GCC U-GACGAA|G CAAUGCCGCG UGUAGGAAGA AGGCC(---U 781 GUG--)GG-U C--GUAAACU GC|UUUU-CU CAGAGAAGAA ---------- (--GUUC--) 841 ---------- UGACG-GU-A UCU-GAGGAA -UAAGCACC- GGCU-AACU- CUGU-(-GCC 901 AGCAGCC-GC GGU---AA-) UACAGAG|GG UGCAAGCGUU GU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UCGUAAAG-| UCU-AAUGUC AAAUACCCGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC UUGG-AC-CG GCAUU--GGA -GAC-U-CAC -GG-A-CUUG AG-UA-CGGU 1141 A-----GAGG CAGAG|GGAA UUCCAAG-UG GAGCG(GUGA AA)UGCGUAG AGA---UUUG 1201 GAGGAACGCC AGU---GGC( GAAG)GC-G- CUCUG-CUG- GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- AACUGACACU 1321 -GAG-AGACG AAAGCUGGGG GAGCGAAAAG G(AUU-A-GA UAC)-CCUAG UAG--UC-CC 1381 A-GCCGUAAA CUAUGGAG-- --AC-UA|AG UG-CUGC--- ---------- --------(- 1441 -------CAC AA---)---- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ------GCAG UGCU-GUAUC (UAAC)GCGU 1561 -UAAGUCUCC |C|GCCUGGA GAGUACGGCU (GGAA)AGAU GAAACUCAAA GGAAUUGACG 1621 GGGACCC-GC ACA------- AGCGGU-GGA UUAUGUGGAU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGUUUG ACA----UG| -UC-AAG--A A------CUU CCCA-----( 1741 GAA-A-)UGG GA-AGG---U G--CC----- ----(-AAC- -----)---- -----GGAG- 1801 ---------- -----|CUUG AACA|C|AGG UGGUGCAUG| GCU-GUCGUC A|-G-CUCGU 1861 |GCU(GUGA) AGUGUAUAG( UUAAGU)CUC AUAACGAGCG CAACCCUCG| UCUUUA-G-U 1921 UGCC------ ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --AGUUU--- )--------- 2101 |GGUUCUCUA AAGAGACUGC CAGU(G-UAA ----)----- ---------- ---------G 2161 CUGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACACCC UGGGCUUC-A 2221 CACGUAAUAC AAUGGU--UG GGACAAUCAG AA----GCGA UCUC------ ---------- 2281 ----(----G UGA-)----- ---------- ----GAGC-U AGCGGAUC-U GUU-AAACCC 2341 AACCUCAGUU CGGAUUGUAG GC(--UGCAA CUC)GCCUAC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCAG(UC- -AGC-AU)AU GGCGGUGAAU AC--GUU--- ---------- 2461 -------CCC GGGUCUUGUA CACACCGCCC GUCACACCCA GGAAGCUGG- UCCUGCUCCA 2521 AGUCGUU--- ACCCU-AACC -(-----UUC G------)-G G-AGG-GGG- GC-GCCU-AA 2581 AG-CAGGGCU AGUGACCAGG GUGAAGUCGU AACAAGGUAG .......(.. ..)..AGUCC 2641 CUGGAUCACC UCCUUC~-|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS Gonm.pec_C 2717 bp RNA RNA 02-JUL-1998 DEFINITION Gonium pectorale str. NIES-468 (green alga) -- chloroplast. ACCESSION No information KEYWORDS No information. SOURCE Gonium pectorale str. NIES-468 (green alga) -- chloroplast. ORGANISM Gonium pectorale. REFERENCE 1 AUTHORS ,H. Kim,Y.-S., Oyaizu,H., Matsumoto,S., Watanabe,M.M. and Nozaki TITLE Chlamydomonas parkeae (Chlorophyta): molecular phylogeny of a green alga with a peculiar pigment composition Chloroplast small-subunit ribosomal RNA gene sequence from JOURNAL Eur. J. Phycol. 29, 213-217 (1994) STANDARD No information COMMENTS common_name= green alga isolate_name= NIES-468 BASE COUNT 376 a 318 c 429 g 312 t 1282 others ORIGIN 1 .......... .......... ...-..(... .)....|... .......GAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGAACG-A G--------- ----CAUUUC A(UU------ 121 ---------- ---C------ )UGAAAUG-- -U---|---- ------GU-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUAC- CUAU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------C 301 GGA------- --GGGGGAUA ACAU------ ---------- --------UG G(GAAA)CUG 361 -UUGCUAAUA CC-CCAUAAA ---------- ---------- -------A-- --------GC 421 U-------(G AGG---)--- ----AGU--- ---GAAA--- ---------- ---------- 481 GGU------- ------(--- -------UAA A------)-- -------|-- --ACCGCCAA 541 UAGA-GGG|G -CUUGCGU|- CUGAUUA-GC UAGUUGG-UG GGG(G-UAAU -G)-CCUCCC 601 AA|GGCCACG AU-CAAUAGC UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGAG-GA AUUUUUCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGAA|G CAAUGCCGCG UGCAGGUAGA AGGCC(---U 781 GUG--)GG-U U--GUAAACU GC|UUUU-CU CAGAGAAGAA ---------- (--GUUC--) 841 ---------- UGACG-GU-A UCU-GAGGAA -UAAGCACC- GGCU-AACU- CUGUG(CC-- 901 AGCAGCC-GC GGU---AA-) UACAGAG|GG UGCAAGCGUU GU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UCGUAAAG-| UCU-AAUGUC AAAUACCCGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC UUGG-AU-CG GCAUU---GA GCAC-U-CAC -GG-A-CUUG AG-UA-CGGU 1141 A-----GAGG CAGAG|GGAA UUCCAAG-UG GAGCG(GUGA AA)UGCGUAG AGA---UUUG 1201 GAGGAACACC AGU---GGC( GAAG)GC-G- CUCUG-CUG- GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- AACUGACACU 1321 -GAG-AGACG AAAGCUGGGG GAGCGAAAAG G(AUU-A-GA UAC)-CCUAG UAG--UC-CC 1381 A-GCCGUAAA CUAUGGAG-- --AC-UA|AG UG-CUGC--- ---------- --------(- 1441 -------UUU UU---)U--- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ------GCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUCUCC |C|GCCUGGG GAGUAUGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU-GGA UUAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGUUUG ACA----UG| -UC-AAG--A A------CUC UUCA-----( 1741 GAA-A-)UGG GG-AGN---N NG-------- ----(UAAC- -----)---- -----GGAA- 1801 ---------- -----|CUUG AACA|C|AGG UGGUGCAUG| GCU-GUCGUC A|-G-CUCGU 1861 |GCU(GUGA) AGUGUAUAG( UUAAGU)CUC AUAACGAGCG CAACCCUCG| UCUUUA-G-U 1921 UGCC------ ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --AGUUU--- )--------- 2101 |GGUUCUCUA AAGAGACUGC CAGU(G-UAA ----)----- ---------- ---------G 2161 CUGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACACCC UGGGCUUC-A 2221 CACGUAAUAC AAUGGU--UG GGACAAUCAG AA----GCGA UCUC------ ---------- 2281 ----(----G UGA-)----- ---------- ----GAGC-A AGCGGAUC-U GUG-AAACCC 2341 AACCUCAGUU CGGAUUGUAG GC(--UGCAA CUC)GCCUAC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCAG(UC- -AG-UAU)AU GGCGGUGAAU AC--GUU--- ---------- 2461 -------CCC GGGUCUUGUA CACACCGCCC GUCACACCCC GGAAGCUGG- UUCUGCUCCA 2521 AGUCGUU--- ACCCU-AACC -(-----UUU UU-----)-G G-AGG-GGG- GC-GCCU-AA 2581 AG-CAGGGCU AGUGACCAGG GUGAAGUCGU AACAAGGUA. .......(.. ..)..AGUCC 2641 CUGGAUCACC UCCUUC~-|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS 2.11.2.2.2 2717 bp RNA RNA 09-JAN-1999 DEFINITION 2.11.2.2.2 CHAROPHYTA-EMBRYOPHYTA_CHLOROPLASTS. ACCESSION No information KEYWORDS No information. SOURCE 2.11.2.2.2 CHAROPHYTA-EMBRYOPHYTA_CHLOROPLASTS. ORGANISM 2.11.2.2.2 CHAROPHYTA-EMBRYOPHYTA_CHLOROPLASTS. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 2717 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~-----~ ~~~~~~~~~~ ~~~~~~---- -----~~~~~ ~~~--~~~~~ 181 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--~ 301 ~~~------- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 -~~~~~~~~~ ~~~~~~~~~~ ---------- ---------- -------~~~ ~~~~~~~~~~ 421 ~~------~~ ~~~~~-~~-- ----~~~~~~ ~~~~~~~~~~ ~~-------- ---------- 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~-~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~-~~~~~ -~--~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 721 ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 781 ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 901 ~~~~~~~-~~ ~~~---~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~|~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~------ 1081 ---~~~~~~~ ~~~~~~~-~~ ~~~~~--~~~ ~~~~~~-~~~ -~~-~-~~~~ ~~-~~~~~~~ 1141 ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~---~~~~ 1201 ~~~~~~~~~~ ~~~~--~~~~ ~~~~~~~-~- ~~~~~-~~~~ ~~~~~--~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ~~~~~~~~~~ 1321 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~--~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~-- --~~-~~~~~ ~~-~~~~~~~ ~~~~~~~--- --------~- 1441 -------~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---------- 1501 ---------- ---------- ---------- --~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 1561 -~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~---~~| ~~~-~~~~~~ ~------~~~ ~~~~~~---~ 1741 ~~~-~~~~~~ ~~-~~~~~~~ ~~~~~~~--- ----~~~~~~ -----~~--- -----~~~~~ 1801 ~~-------- -----~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~-~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ 1921 ~~~~-~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------~ --~~~~~--- ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ----~~---- ---~~~~~~~ ~~~------~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 2221 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~---~~~~ ~~~~------ ---------- 2281 ----~----~ ~~~-~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~--~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- 2401 ---~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~-- ---------- 2461 -------~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~~ ~-~~~~~~~~ ~~~~~~~-~~ 2581 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS Clst.ehr_C 2717 bp RNA RNA 02-JUL-1998 DEFINITION Closterium ehrenbergii str. NIES-228 (green alga) -- chloroplast. ACCESSION No information KEYWORDS No information. SOURCE Closterium ehrenbergii str. NIES-228 (green alga) -- chloroplast. ORGANISM Closterium ehrenbergii. REFERENCE 1 AUTHORS ,H. Kim,Y.-S., Oyaizu,H., Matsumoto,S., Watanabe,M.M. and Nozaki TITLE Chlamydomonas parkeae (Chlorophyta): molecular phylogeny of a green alga with a peculiar pigment composition Chloroplast small-subunit ribosomal RNA gene sequence from JOURNAL Eur. J. Phycol. 29, 213-217 (1994) STANDARD No information COMMENTS common_name= green alga isolate_name= NIES-228 BASE COUNT 369 a 365 c 474 g 282 t 1227 others ORIGIN 1 .......... ..NAAGGAUC CAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCCU--A ACACAUGCAA GUCGUACG-G A--------- -------ACC A(UUC----- 121 ---------- --AU------ )UGGU----- -----|---- ------UC-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCCU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------U 301 GGC------- --GGGGGACA ACCA------ ---------- --------CU G(GAAA)CGG 361 -UGGCUAAUA CC-CCAU-AU ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGU--- ---AAAA--- ---------- ---------- 481 GGA------- ------(--- -------GGA A------)-- -------|-- --UCCACCAA 541 GGGA-GGG|G -CUUGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-UAAU GG)-CUUACC 601 AA|GGCGACG AU-CAGUAGC UG|GUCU(GA GA)GGAUGAC CAGC|CACAC UGGGA(CUGA 661 GACACG)GUC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGCCGCG UGGGGGAAUA AGGCC(---C 781 ACG--)GG-U C--GUAAACC CC|UUUU-CU CAGAGAAGAA ---------- (--GGGA--) 841 ---------- UGACG-GU-A UCU-GGGGAA -UAAGCAUC- GGCU-AACU- CUGUG(CCA- 901 -GCAGCC-GC GGU---AA-) GACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUCUUAAG-| UCU-GCUGUC AAAUCCCCGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CUGG-CC-AG GCGGU--GGA -GAC-U-ACU -AG-A-CUUG AG-UA-CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 AAAGAACACC AAA---GGC( GAAG)GC-A- CUCGU-CUG- GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- GANUGACACU 1321 -GAG-AGACA GAGACUAGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG--UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC-UA|AG GC-CUGUGCG ------U--- --------(- 1441 -------AUC GA---)CC-- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---CGUACAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUUC |C|GCCUGGG GAGUACGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGUU-GGA GCAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGCUUA ACA----UG| -CC-GCG--A A------GCC CCCU-----( 1741 GAA-A-)GGG GG-GAG---U G--CC----- ----(UUCG- -----)---- -----G-AG- 1801 ---------- -----|CGCG GACA|C|AGG UAAUGCAUG| GCU-GUCGUC A|-G-CUCGU 1861 |GCC(GUGA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG UAACCCUCG| UGUUUA-G-U 1921 UGCC-AGCAG ---------- ---------- --------U- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --UCCGG--- )------CCG 2101 |GGAACCCUA GACAGACUGC CAGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAGCAUGCC CCUUACGCCC UGGGCCAC-A 2221 CACGUGCUAC AAUGGU--CG GGACAAUGGG AU----GCUA CCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GCGC-A AGCCAACC-U CAA-AAACCC 2341 GGCCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGGCGG AAUCGCU--- 2401 ---AGUAAU- CGCAGG(UC- -AG-CAU)AC UGCGGUGAAU AC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAU GGGAGCUGG- UUUUGCCCGA 2521 AGUCGUU--- ACUCC-AACC -(-----GCA -------)-G A-GGG-GGA- UCCGGAU-GC 2581 CG-ACGGGCU AGUGACUGGA GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGAGUCC 2641 CUGGAUCACC UCCUUC~-|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS Spgn.com_C 2717 bp RNA RNA 02-JUL-1998 DEFINITION Sphagnum compactum. ACCESSION No information KEYWORDS No information. SOURCE Sphagnum compactum. ORGANISM Sphagnum compactum. REFERENCE 1 AUTHORS Vilgalys,R. Mishler,B.D., Thrall,P.H., Hopple,J.S.,Jr., De Luna,E. and TITLE Cladistic analysis of chloroplast-encoded 16S and 23S ribosomal RNA genes A molecular approach to the phylogeny of Bryophytes: JOURNAL The Bryologist 95, 172-180 (1992) STANDARD No information COMMENTS legacy_attribute= date_source=5/9/89 geog_source= Durham Co., North Carolina common_name= bryophyte BASE COUNT 50 a 39 c 71 g 38 t 2519 others ORIGIN 1 .......... .......... ...-..(... .)....|... .......... .......... 61 .......... .......... .......... .......... .......... .(.A------ 121 ---------- --GU------ )GG-U----- -GUUU|---- ------UC-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGGACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -UUGCUAAUA CC-CCAU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAA--- ---------- ---------- 481 GGA------- ------(--- -------GGA A------)-- -------|-- --UCCGCCCA 541 AGGA-GGG|G -CUUNCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-CAAU GG)-CUUACC 601 AA|GGCGACG AU-CAGUAGC UG|NNCU(GA GA)GG..... ....|..... .....(.... 661 ......)... .......-.. .(..-..).. -.--...... .......... ........-. 721 .........( -....).... .-......|. .......... .......... .....(..-. 781 .....).... .--....... ..|....... .......... .......... (........) 841 .......... .....-.... .......... .......... .........- .....(.... 901 .......-.. ...---..-) .......|.. .......... ..-....... ........|. 961 .......... .......|.. ........-| ...-...... .......... ..(....... 1021 .......... .......... .......... .......... .......... ....------ 1081 ---...)... .......-.. .....--... ......-... -..-.-.... ..-....... 1141 ..----.... .....|.... .......-.. .....(.... ..)....... ...---.... 1201 .......... ....--...( ....)..-.- .....-.... .....--... .......... 1261 .......... .......... .......... .........- ---------- .......... 1321 -......... .......... .......... .(...-.... ...)...... ...--..... 1381 .......... ........-- --..-..|.. ..-....... .......--- --------(- 1441 -------... ..---).... .......... .......... .......--- ---------- 1501 ---------- ---------- ---------- --........ ....-..... (....).... 1561 -......... |.|....... .......... (....).... .......... .......... 1621 .......... .......... ......-... .......... ........(. .......).. 1681 .......... .......... ....---..| ...-...... .------... ......---( 1741 ...-..)... ..-....... .......--- ----(..... -----).--- -----..... 1801 ..-------- -----|.... ....|.|... .........| ...-...... .|..-..... 1861 |...(....) .........( ......)... .......... .........| ......-... 1921 ....-..... -......... .......... .........- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --.....--- )......... 2101 |......... .......... ....(..... ----).---- ---....... ...------. 2161 .......... .......... .......--. .......... .......... ........-. 2221 .......... .......-.. .......... ...---.... ....------ ---------- 2281 ----(----. ...-)-.... .......... .......... ........-. .......... 2341 .......... .......... ..(--..... ...)...... .......... .......--- 2401 ---....... ......(... -......).. .......... ...-....-- ---------- 2461 -------... .......... .......... .......... .......... .......... 2521 .......--- .......... .(........ .....--).. .-........ .......-.. 2581 ..-....... .......... .......... .......... .......(.. ..)....... 2641 .......... .......-|. .......... .......... .......... .....~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS Polt.com_C 2717 bp RNA RNA 02-JUL-1998 DEFINITION Polytrichum commune. ACCESSION No information KEYWORDS No information. SOURCE Polytrichum commune. ORGANISM Polytrichum commune. REFERENCE 1 AUTHORS Vilgalys,R. Mishler,B.D., Thrall,P.H., Hopple,J.S.,Jr., De Luna,E. and TITLE Cladistic analysis of chloroplast-encoded 16S and 23S ribosomal RNA genes A molecular approach to the phylogeny of Bryophytes: JOURNAL The Bryologist 95, 172-180 (1992) STANDARD No information COMMENTS legacy_attribute= date_source=5/9/89 common_name= moss geog_source= Durham Co., North Carolina BASE COUNT 50 a 38 c 73 g 40 t 2516 others ORIGIN 1 .......... .......... ...-..(... .)....|... .......... .......... 61 .......... .......... .......... .......... .......... .(.A------ 121 ---------- --GU------ )GG-U----- -GUUU|---- ------UU-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGGACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -UUGCUAAUA CC-CCAU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAA--- ---------- ---------- 481 GGA------- ------(--- -------GGA A------)-- -------|-- --UCCGCCCA 541 AGGA-GGG|G -CUUGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-CAAU GG)-CUUACC 601 AA|GGCGACG AU-CAGUAGC UG|GUCU(GA GA)GG..... ....|..... .....(.... 661 ......)... .......-.. .(..-..).. -.--...... .......... ........-. 721 .........( -....).... .-......|. .......... .......... .....(..-. 781 .....).... .--....... ..|....... .......... .......... (........) 841 .......... .....-.... .......... .......... .........- .....(.... 901 .......-.. ...---..-) .......|.. .......... ..-....... ........|. 961 .......... .......|.. ........-| ...-...... .......... ..(....... 1021 .......... .......... .......... .......... .......... ....------ 1081 ---...)... .......-.. .....--... ......-... -..-.-.... ..-....... 1141 ..----.... .....|.... .......-.. .....(.... ..)....... ...---.... 1201 .......... ....--...( ....)..-.- .....-.... .....--... .......... 1261 .......... .......... .......... .........- ---------- .......... 1321 -......... .......... .......... .(...-.... ...)...... ...--..... 1381 .......... ........-- --..-..|.. ..-....... .......--- --------(- 1441 -------... ..---).... .......... .......... .......--- ---------- 1501 ---------- ---------- ---------- --........ ....-..... (....).... 1561 -......... |.|....... .......... (....).... .......... .......... 1621 .......... .......... ......-... .......... ........(. .......).. 1681 .......... .......... ....---..| ...-...... .------... ......---( 1741 ...-..)... ..-....... .......--- ----(..... -----).--- -----..... 1801 ..-------- -----|.... ....|.|... .........| ...-...... .|..-..... 1861 |...(....) .........( ......)... .......... .........| ......-... 1921 ....-..... -......... .......... .........- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --.....--- )......... 2101 |......... .......... ....(..... ----).---- ---....... ...------. 2161 .......... .......... .......--. .......... .......... ........-. 2221 .......... .......-.. .......... ...---.... ....------ ---------- 2281 ----(----. ...-)-.... .......... .......... ........-. .......... 2341 .......... .......... ..(--..... ...)...... .......... .......--- 2401 ---....... ......(... -......).. .......... ...-....-- ---------- 2461 -------... .......... .......... .......... .......... .......... 2521 .......--- .......... .(........ .....--).. .-........ .......-.. 2581 ..-....... .......... .......... .......... .......(.. ..)....... 2641 .......... .......-|. .......... .......... .......... .....~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS Thdm.del_C 2717 bp RNA RNA 02-JUL-1998 DEFINITION Thuidium delicatulum. ACCESSION No information KEYWORDS No information. SOURCE Thuidium delicatulum. ORGANISM Thuidium delicatulum. REFERENCE 1 AUTHORS Vilgalys,R. Mishler,B.D., Thrall,P.H., Hopple,J.S.,Jr., De Luna,E. and TITLE Cladistic analysis of chloroplast-encoded 16S and 23S ribosomal RNA genes A molecular approach to the phylogeny of Bryophytes: JOURNAL The Bryologist 95, 172-180 (1992) STANDARD No information COMMENTS legacy_attribute= date_source=11/18/88 common_name= mat-forming plant geog_source= McDowell Co., North Carolina BASE COUNT 51 a 39 c 71 g 39 t 2517 others ORIGIN 1 .......... .......... ...-..(... .)....|... .......... .......... 61 .......... .......... .......... .......... .......... .(.A------ 121 ---------- --GU------ )GG-U----- -GUUU|---- ------UC-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGGACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -UUGCUAAUA CC-CCAU-AA ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---GAAA--- ---------- ---------- 481 GGA------- ------(--- -------GGA A------)-- -------|-- --UCCACCCA 541 AGGA-GGG|G -CUUGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-CAAU GG)-CUUACC 601 AA|GGCGACG AU-CAGUAGC UG|NUCU(GA GA)GG..... ....|..... .....(.... 661 ......)... .......-.. .(..-..).. -.--...... .......... ........-. 721 .........( -....).... .-......|. .......... .......... .....(..-. 781 .....).... .--....... ..|....... .......... .......... (........) 841 .......... .....-.... .......... .......... .........- .....(.... 901 .......-.. ...---..-) .......|.. .......... ..-....... ........|. 961 .......... .......|.. ........-| ...-...... .......... ..(....... 1021 .......... .......... .......... .......... .......... ....------ 1081 ---...)... .......-.. .....--... ......-... -..-.-.... ..-....... 1141 ..----.... .....|.... .......-.. .....(.... ..)....... ...---.... 1201 .......... ....--...( ....)..-.- .....-.... .....--... .......... 1261 .......... .......... .......... .........- ---------- .......... 1321 -......... .......... .......... .(...-.... ...)...... ...--..... 1381 .......... ........-- --..-..|.. ..-....... .......--- --------(- 1441 -------... ..---).... .......... .......... .......--- ---------- 1501 ---------- ---------- ---------- --........ ....-..... (....).... 1561 -......... |.|....... .......... (....).... .......... .......... 1621 .......... .......... ......-... .......... ........(. .......).. 1681 .......... .......... ....---..| ...-...... .------... ......---( 1741 ...-..)... ..-....... .......--- ----(..... -----).--- -----..... 1801 ..-------- -----|.... ....|.|... .........| ...-...... .|..-..... 1861 |...(....) .........( ......)... .......... .........| ......-... 1921 ....-..... -......... .......... .........- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --.....--- )......... 2101 |......... .......... ....(..... ----).---- ---....... ...------. 2161 .......... .......... .......--. .......... .......... ........-. 2221 .......... .......-.. .......... ...---.... ....------ ---------- 2281 ----(----. ...-)-.... .......... .......... ........-. .......... 2341 .......... .......... ..(--..... ...)...... .......... .......--- 2401 ---....... ......(... -......).. .......... ...-....-- ---------- 2461 -------... .......... .......... .......... .......... .......... 2521 .......--- .......... .(........ .....--).. .-........ .......-.. 2581 ..-....... .......... .......... .......... .......(.. ..)....... 2641 .......... .......-|. .......... .......... .......... .....~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS Pisu.sat_C 2717 bp RNA RNA 02-JUL-1998 DEFINITION Pisum sativum str. Rosakrona (pea; garden pea) -- chloroplast. ACCESSION No information KEYWORDS No information. SOURCE Pisum sativum str. Rosakrona (pea; garden pea) -- chloroplast. ORGANISM Pisum sativum. REFERENCE 1 AUTHORS Sun,E., Wu,B.-W. and Tewari,K.K. TITLE promoter In vitro analysis of the pea chloroplast 16S rRNA gene JOURNAL Mol. Cell. Biol. 9, 5650-5659 (1989) STANDARD No information REFERENCE 2 AUTHORS Shapiro,D.R. and Tewari,K.K. TITLE Nucleotide sequences of transfer RNA genes in the Pisum sativum chloroplast DNA JOURNAL Plant Mol. Biol. 6, 1-12 (1986) STANDARD No information REFERENCE 3 AUTHORS Khanna,N.C., Lakhani,S. and Tewari,K.K. TITLE Identification of the template binding polypeptide in the pea chloroplast transcriptional complex JOURNAL No information STANDARD No information REFERENCE 4 AUTHORS Sun,E., Shapiro,D.R., Wu,B.W. and Tewari,K.K. TITLE Specific in vitro transcription of 16S rRNA gene by pea chloroplast RNA polymerase JOURNAL Plant Mol. Biol. 6, 429-439 (1986) STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: M16874|g343039 (bases 328 to 545) legacy_attribute= A prior version of this sequence was S81977 in Genbank release 75.0. common_name= pea; garden pea isolate_name= Rosakrona NB: M16874 (328..>545), M16862 (328..>545), & M30826 (328. .>545) are identical. BASE COUNT 53 a 47 c 78 g 40 t 2499 others ORIGIN 1 ........GA AGCUCAUGGA GAG-UU(U-G A)UC-U|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--U ACACAUGCAA GUCGGACG-G G--------- --------AA G(UGG----- 121 ---------- --UG------ )UUU------ -----|---- ------CC-- AGU--GGCGA 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGGACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CC-CCGU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---GAAA--- ---------- ---------- 481 GGA------- ------(--- -------GGA A------)-- -------|-- --UCCGCCCA 541 AGGA-GGG|G -CUCGCGU|- CUGAUU.... .......... ...(.-.... ..)....... 601 ..|....... ..-....... ..|....(.. ..)....... ....|..... .....(.... 661 ......)... .......-.. .(..-..).. -.--...... .......... ........-. 721 .........( -....).... .-......|. .......... .......... .....(..-. 781 .....).... .--....... ..|....... .......... .......... (........) 841 .......... .....-.... .......... .......... .........- .....(.... 901 .......-.. ...---..-) .......|.. .......... ..-....... ........|. 961 .......... .......|.. ........-| ...-...... .......... ..(....... 1021 .......... .......... .......... .......... .......... ....------ 1081 ---...)... .......-.. .....--... ......-... -..-.-.... ..-....... 1141 ..----.... .....|.... .......-.. .....(.... ..)....... ...---.... 1201 .......... ....--...( ....)..-.- .....-.... .....--... .......... 1261 .......... .......... .......... .........- ---------- .......... 1321 -......... .......... .......... .(...-.... ...)...... ...--..... 1381 .......... ........-- --..-..|.. ..-....... .......--- --------(- 1441 -------... ..---).... .......... .......... .......--- ---------- 1501 ---------- ---------- ---------- --........ ....-..... (....).... 1561 -......... |.|....... .......... (....).... .......... .......... 1621 .......... .......... ......-... .......... ........(. .......).. 1681 .......... .......... ....---..| ...-...... .------... ......---( 1741 ...-..)... ..-....... .......--- ----(..... -----).--- -----..... 1801 ..-------- -----|.... ....|.|... .........| ...-...... .|..-..... 1861 |...(....) .........( ......)... .......... .........| ......-... 1921 ....-..... -......... .......... .........- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --.....--- )......... 2101 |......... .......... ....(..... ----).---- ---....... ...------. 2161 .......... .......... .......--. .......... .......... ........-. 2221 .......... .......-.. .......... ...---.... ....------ ---------- 2281 ----(----. ...-)-.... .......... .......... ........-. .......... 2341 .......... .......... ..(--..... ...)...... .......... .......--- 2401 ---....... ......(... -......).. .......... ...-....-- ---------- 2461 -------... .......... .......... .......... .......... .......... 2521 .......--- .......... .(........ .....--).. .-........ .......-.. 2581 ..-....... .......... .......... .......... .......(.. ..)....... 2641 .......... .......-|. .......... .......... .......... .....~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS Epif.vir_C 2717 bp RNA RNA 02-JUL-1998 DEFINITION Epifagus virginiana. ACCESSION No information KEYWORDS No information. SOURCE Epifagus virginiana. ORGANISM Epifagus virginiana. REFERENCE 1 AUTHORS Wolfe,K.H., Katz-Downie,D.S., Morden,C.W. and Palmer,J.D. TITLE parasitic plant: accelerated sequence evolution, altered, promoter structure, and tRNA pseudogenes Evolution of the plastid ribosomal RNA operon in a nongreen JOURNAL Plant Mol. Biol. 18, 1037-1048 (1992) STANDARD No information REFERENCE 2 AUTHORS Wolfe,K.H., Morden,C.W. and Palmer,J.D. TITLE Function and evolution of a minimal plastid genome from a nonphotosynthetic parasitic plant JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 10648-10652 (1992) STANDARD No information REFERENCE 3 AUTHORS Wolfe,K.H., Morden,C.W., Ems,S.C. and Palmer,J.D. TITLE Rapid evolution of the plastid translational apparatus in a nonphotosynthetic plant: loss or accelerated sequence evolution of tRNA and ribosomal protein genes JOURNAL J. Mol. Evol. 35, 304-317 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: M81884 common_name= beechdrops NB: seq. in GB# M81884 & X62099 differ by one base ('U') at 3' end X62099 16S part is bases 1 to 610; 1976 to 4164 BASE COUNT 373 a 349 c 479 g 292 t 1224 others ORIGIN 1 .......... .UAUAAUGGA GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGGACG-G G--------- --------AA G(UGG----- 121 ---------- --UG------ )UUU------ -----|---- ------CC-- GGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCCU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGAACA ACAG------ ---------- --------CC G(GAAA)CGG 361 -CUGCUAAUA CC-UCGU-AA ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---UAAA--- ---------- ---------- 481 GGA------- ------(--- -------GGA A------)-- -------|-- --UCCGCCCG 541 AGGA-GGG|G -CUUGCGU|- CUGAUUA-GC UAGUUGG-UG -GG(G-CAAU AG)-CUUACC 601 AA|GGCGAUG AU-CAGUAGC UG|GUCC(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GC- U-GACGGA|G CAAUGCCGCG UGGAGGUAGA AGGCC(---C 781 ACG--)GG-U C--GUGAACU UC|UUUU-AC CGAAGAAGAA ---------- (--GCAA--) 841 ---------- UGACG-GU-A UCU-GGGGAA -UAAGCAUC- GGCU-AACU- CUGUG(CCA- 901 -GCAGCC-GC GGU---AA-) GACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUUUUAUG-| UCC-GCCGUC AAAUACCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CCGG-AC-AG GCGGU--GGA -AAC-U-AUC -UA-G-CUGG AG-UA-CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGUUUAG AGA---UCGG 1201 GAAGAACACC AAC---GGC( GAAA)GC-A- CUCUG-CUG- GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 -UAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG--UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC-UA|GG CG-CUGUGCG ------U--- --------(- 1441 -------AUC GA---)CC-- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---CGUGCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUAUGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU-GGA GCAUGUGGUU UAAUUCG-(A UGCAAAG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-GCG--A A------UCC UCUU-----( 1741 GAA-A-)GAG AG-GGG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGCAUG| GCU-GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CCC GUAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCC-CUCG- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --UUUAA--- )----UUUGU 2101 |GGAACCCUG AACAGACUGC CGGC(GAGAA ----)----- ---------- ---------G 2161 CCAGAGGAAG GUGAGGAUGA CGUC-AA--G UCAUCAUGCC CCUUAUGCCC UGGGCGAC-A 2221 CACGUGCUAC AACGGC--CG GGACAAAGGG UC----GCGA UCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGU-G AGCUAACC-C CAA-AAACCC 2341 GUCCUCAGUU CGGAUUGCAG AC(--UGCAA CUC)GUCUGC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU UA--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAU GGAAGCUGG- CCAUGCCCGA 2521 AGUCGUU--- AUCUU-AACC -(-----AAA A------)-G G-AGG-GGG- AU-GCCG-AA 2581 GG-CAGGGCU AGUGACUGGA GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCAG 2641 CUGGAUCACC UCCUUUU-|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS Nico.ta2_C 2717 bp RNA RNA 02-JUL-1998 DEFINITION Nicotiana tabacum. ACCESSION No information KEYWORDS No information. SOURCE Nicotiana tabacum. ORGANISM Nicotiana tabacum. REFERENCE 1 AUTHORS Zoubenko,O.V., Allison,L.A., Svab,Z. and Maliga,P. TITLE region of the tobacco plastid genome Efficient targeting of foreign genes into the repeated JOURNAL Nucleic Acids Res. 22, 3819-3824 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U12809|g559545 (bases 1 to 1324) complement legacy_attribute= Cloning vector pPRV1 common_name= common tobacco; tobacco; American tobacco BASE COUNT 331 a 314 c 430 g 249 t 1393 others ORIGIN 1 ~~~~~~~~~~ ~UCUCAUGGA GAG-UU(C-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGGACG-G G--------- --------AA G(UGG----- 121 ---------- --UG------ )UUU------ -----|---- ------CC-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGAACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CC-CCGU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAA--- ---------- ---------- 481 GGA------- ------(--- -------GGA A------)-- -------|-- --UCCGCCCG 541 AGGA-GGG|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-CAAU AG)-CUUACC 601 AA|GGCGAUG AU-CAGUAGC UG|GUCC(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GC- U-GACGGA|G CAAUGCCGCG UGGAGGUAGA AGGCC(---C 781 ACG--)GG-U C--GUGAACU UC|UUUU-CC CGGAGAAGAA ---------- (--GCAA--) 841 ---------- UGACG-GU-A UCU-GGGGAA -UAAGCAUC- GGCU-AACU- CUGUG(CCA- 901 -GCAGCC-GC GGU---AA-) UACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUUUUAAG-| UCC-GCCGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-AG GCGGU--GGA -AAC-U-ACC -AA-G-CUGG AG-UA-CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 AAAGAACACC AAC---GGC( GAAA)GC-A- CUCUG-CUG- GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 -GAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG--UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC-UA|GG CG-CUGUGCG ------U--- --------(- 1441 -------AUC GA---)CC-- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---CGUGCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU-GGA GCAUGUGGUU UAAUUCG-(A UGCAAAG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-GCG--A A------UCC UCUU-----( 1741 GAA-A-)GAG AG-GGG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGCAUG| GCU-GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCC-AUCG- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --UUGAG--- )------UUU 2101 |GGAACCCUG AACAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAUCAUGCC CCUUAUGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG GGACAAAGGG UC----GCGA UCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----G-GU-G AGCUAACC-C CAA-AAACCC 2341 GUCCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU U..-....-- ---------- 2461 -------... .......... .......... .......... .......... .......... 2521 .......--- .......... .(........ .....--).. .-........ .......-.. 2581 ..-....... .......... .......... .......... .......(.. ..)....... 2641 .......... .......-|. .......... .......... .......... .....~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS Nico.ta3_C 2717 bp RNA RNA 02-JUL-1998 DEFINITION Nicotiana tabacum. ACCESSION No information KEYWORDS No information. SOURCE Nicotiana tabacum. ORGANISM Nicotiana tabacum. REFERENCE 1 AUTHORS Zoubenko,O.V., Allison,L.A., Svab,Z. and Maliga,P. TITLE plastid genome Efficient targeting of foreign genes into the tobacco JOURNAL Nucleic Acids Res. 22, 3819-3824 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U12810|g559546 (bases 1 to 1324) complement legacy_attribute= Cloning vector pPRV100A common_name= common tobacco; tobacco; American tobacco BASE COUNT 331 a 314 c 430 g 249 t 1393 others ORIGIN 1 .......... .UCUCAUGGA GAG-UU(C-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGGACG-G G--------- --------AA G(UGG----- 121 ---------- --UG------ )UUU------ -----|---- ------CC-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGAACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CC-CCGU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAA--- ---------- ---------- 481 GGA------- ------(--- -------GGA A------)-- -------|-- --UCCGCCCG 541 AGGA-GGG|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-CAAU AG)-CUUACC 601 AA|GGCGAUG AU-CAGUAGC UG|GUCC(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GC- U-GACGGA|G CAAUGCCGCG UGGAGGUAGA AGGCC(---C 781 ACG--)GG-U C--GUGAACU UC|UUUU-CC CGGAGAAGAA ---------- (--GCAA--) 841 ---------- UGACG-GU-A UCU-GGGGAA -UAAGCAUC- GGCU-AACU- CUGUG(CCA- 901 -GCAGCC-GC GGU---AA-) UACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUUUUAAG-| UCC-GCCGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-AG GCGGU--GGA -AAC-U-ACC -AA-G-CUGG AG-UA-CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 AAAGAACACC AAC---GGC( GAAA)GC-A- CUCUG-CUG- GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 -GAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG--UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC-UA|GG CG-CUGUGCG ------U--- --------(- 1441 -------AUC GA---)CC-- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---CGUGCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU-GGA GCAUGUGGUU UAAUUCG-(A UGCAAAG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-GCG--A A------UCC UCUU-----( 1741 GAA-A-)GAG AG-GGG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGCAUG| GCU-GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCC-AUCG- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --UUGAG--- )------UUU 2101 |GGAACCCUG AACAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAUCAUGCC CCUUAUGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG GGACAAAGGG UC----GCGA UCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----G-GU-G AGCUAACC-C CAA-AAACCC 2341 GUCCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU U..-....-- ---------- 2461 -------... .......... .......... .......... .......... .......... 2521 .......--- .......... .(........ .....--).. .-........ .......-.. 2581 ..-....... .......... .......... .......... .......(.. ..)....... 2641 .......... .......-|. .......... .......... .......... .....~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS Nico.ta4_C 2717 bp RNA RNA 02-JUL-1998 DEFINITION Nicotiana tabacum. ACCESSION No information KEYWORDS No information. SOURCE Nicotiana tabacum. ORGANISM Nicotiana tabacum. REFERENCE 1 AUTHORS Zoubenko,O.V., Allison,L.A., Svab,Z. and Maliga,P. TITLE Efficient targeting of foreign genes into the tobacco plastid genome JOURNAL Nucleic Acids Res. 22, 3819-3824 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U12811|g559547 (bases 1 to 1324) complement legacy_attribute= Cloning vector pPRV100B common_name= common tobacco; tobacco; American tobacco BASE COUNT 331 a 314 c 430 g 249 t 1393 others ORIGIN 1 .......... .UCUCAUGGA GAG-UU(C-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGGACG-G G--------- --------AA G(UGG----- 121 ---------- --UG------ )UUU------ -----|---- ------CC-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGAACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CC-CCGU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAA--- ---------- ---------- 481 GGA------- ------(--- -------GGA A------)-- -------|-- --UCCGCCCG 541 AGGA-GGG|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-CAAU AG)-CUUACC 601 AA|GGCGAUG AU-CAGUAGC UG|GUCC(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GC- U-GACGGA|G CAAUGCCGCG UGGAGGUAGA AGGCC(---C 781 ACG--)GG-U C--GUGAACU UC|UUUU-CC CGGAGAAGAA ---------- (--GCAA--) 841 ---------- UGACG-GU-A UCU-GGGGAA -UAAGCAUC- GGCU-AACU- CUGUG(CCA- 901 -GCAGCC-GC GGU---AA-) UACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUUUUAAG-| UCC-GCCGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-AG GCGGU--GGA -AAC-U-ACC -AA-G-CUGG AG-UA-CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 AAAGAACACC AAC---GGC( GAAA)GC-A- CUCUG-CUG- GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 -GAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG--UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC-UA|GG CG-CUGUGCG ------U--- --------(- 1441 -------AUC GA---)CC-- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---CGUGCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU-GGA GCAUGUGGUU UAAUUCG-(A UGCAAAG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-GCG--A A------UCC UCUU-----( 1741 GAA-A-)GAG AG-GGG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGCAUG| GCU-GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCC-AUCG- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --UUGAG--- )------UUU 2101 |GGAACCCUG AACAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAUCAUGCC CCUUAUGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG GGACAAAGGG UC----GCGA UCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----G-GU-G AGCUAACC-C CAA-AAACCC 2341 GUCCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU U..-....-- ---------- 2461 -------... .......... .......... .......... .......... .......... 2521 .......--- .......... .(........ .....--).. .-........ .......-.. 2581 ..-....... .......... .......... .......... .......(.. ..)....... 2641 .......... .......-|. .......... .......... .......... .....~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS Nico.ta5_C 2717 bp RNA RNA 02-JUL-1998 DEFINITION Nicotiana tabacum. ACCESSION No information KEYWORDS No information. SOURCE Nicotiana tabacum. ORGANISM Nicotiana tabacum. REFERENCE 1 AUTHORS Zoubenko,O.V., Allison,L.A., Svab,Z. and Maliga,P. TITLE plastid genome Efficient targeting of foreign genes into the tobacco JOURNAL Nucleic Acids Res. 22, 3819-3824 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U12812|g559548 (bases 1 to 1324) complement legacy_attribute= Cloning vector pPRV111A common_name= common tobacco; tobacco; American tobacco BASE COUNT 331 a 314 c 430 g 249 t 1393 others ORIGIN 1 .......... .UCUCAUGGA GAG-UU(C-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGGACG-G G--------- --------AA G(UGG----- 121 ---------- --UG------ )UUU------ -----|---- ------CC-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGAACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CC-CCGU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAA--- ---------- ---------- 481 GGA------- ------(--- -------GGA A------)-- -------|-- --UCCGCCCG 541 AGGA-GGG|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-CAAU AG)-CUUACC 601 AA|GGCGAUG AU-CAGUAGC UG|GUCC(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GC- U-GACGGA|G CAAUGCCGCG UGGAGGUAGA AGGCC(---C 781 ACG--)GG-U C--GUGAACU UC|UUUU-CC CGGAGAAGAA ---------- (--GCAA--) 841 ---------- UGACG-GU-A UCU-GGGGAA -UAAGCAUC- GGCU-AACU- CUGUG(CCA- 901 -GCAGCC-GC GGU---AA-) UACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUUUUAAG-| UCC-GCCGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-AG GCGGU--GGA -AAC-U-ACC -AA-G-CUGG AG-UA-CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 AAAGAACACC AAC---GGC( GAAA)GC-A- CUCUG-CUG- GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 -GAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG--UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC-UA|GG CG-CUGUGCG ------U--- --------(- 1441 -------AUC GA---)CC-- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---CGUGCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU-GGA GCAUGUGGUU UAAUUCG-(A UGCAAAG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-GCG--A A------UCC UCUU-----( 1741 GAA-A-)GAG AG-GGG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGCAUG| GCU-GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCC-AUCG- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --UUGAG--- )------UUU 2101 |GGAACCCUG AACAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAUCAUGCC CCUUAUGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG GGACAAAGGG UC----GCGA UCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----G-GU-G AGCUAACC-C CAA-AAACCC 2341 GUCCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU U..-....-- ---------- 2461 -------... .......... .......... .......... .......... .......... 2521 .......--- .......... .(........ .....--).. .-........ .......-.. 2581 ..-....... .......... .......... .......... .......(.. ..)....... 2641 .......... .......-|. .......... .......... .......... .....~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS Nico.ta6_C 2717 bp RNA RNA 02-JUL-1998 DEFINITION Nicotiana tabacum. ACCESSION No information KEYWORDS No information. SOURCE Nicotiana tabacum. ORGANISM Nicotiana tabacum. REFERENCE 1 AUTHORS Zoubenko,O.V., Allison,L.A., Svab,Z. and Maliga,P. TITLE plastid genome Efficient targeting of foreign genes into the tobacco JOURNAL Nucleic Acids Res. 22, 3819-3824 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U12813|g559550 (bases 1 to 1324) complement legacy_attribute= Cloning vector pPRV111B common_name= common tobacco; tobacco; American tobacco BASE COUNT 331 a 314 c 430 g 249 t 1393 others ORIGIN 1 .......... .UCUCAUGGA GAG-UU(C-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGGACG-G G--------- --------AA G(UGG----- 121 ---------- --UG------ )UUU------ -----|---- ------CC-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGAACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CC-CCGU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAA--- ---------- ---------- 481 GGA------- ------(--- -------GGA A------)-- -------|-- --UCCGCCCG 541 AGGA-GGG|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-CAAU AG)-CUUACC 601 AA|GGCGAUG AU-CAGUAGC UG|GUCC(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GC- U-GACGGA|G CAAUGCCGCG UGGAGGUAGA AGGCC(---C 781 ACG--)GG-U C--GUGAACU UC|UUUU-CC CGGAGAAGAA ---------- (--GCAA--) 841 ---------- UGACG-GU-A UCU-GGGGAA -UAAGCAUC- GGCU-AACU- CUGUG(CCA- 901 -GCAGCC-GC GGU---AA-) UACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUUUUAAG-| UCC-GCCGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-AG GCGGU--GGA -AAC-U-ACC -AA-G-CUGG AG-UA-CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 AAAGAACACC AAC---GGC( GAAA)GC-A- CUCUG-CUG- GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 -GAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG--UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC-UA|GG CG-CUGUGCG ------U--- --------(- 1441 -------AUC GA---)CC-- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---CGUGCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU-GGA GCAUGUGGUU UAAUUCG-(A UGCAAAG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-GCG--A A------UCC UCUU-----( 1741 GAA-A-)GAG AG-GGG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGCAUG| GCU-GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCC-AUCG- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --UUGAG--- )------UUU 2101 |GGAACCCUG AACAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAUCAUGCC CCUUAUGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG GGACAAAGGG UC----GCGA UCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----G-GU-G AGCUAACC-C CAA-AAACCC 2341 GUCCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU U..-....-- ---------- 2461 -------... .......... .......... .......... .......... .......... 2521 .......--- .......... .(........ .....--).. .-........ .......-.. 2581 ..-....... .......... .......... .......... .......(.. ..)....... 2641 .......... .......-|. .......... .......... .......... .....~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS Nico.ta7_C 2717 bp RNA RNA 02-JUL-1998 DEFINITION Nicotiana tabacum. ACCESSION No information KEYWORDS No information. SOURCE Nicotiana tabacum. ORGANISM Nicotiana tabacum. REFERENCE 1 AUTHORS Zoubenko,O.V., Allison,L.A., Svab,Z. and Maliga,P. TITLE plastid genome Efficient targeting of foreign genes into the tobacco JOURNAL Nucleic Acids Res. 22, 3819-3824 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U12814|g559552 (bases 1 to 1324) complement legacy_attribute= Cloning vector pPRV112A common_name= common tobacco; tobacco; American tobacco BASE COUNT 331 a 314 c 430 g 249 t 1393 others ORIGIN 1 .......... .UCUCAUGGA GAG-UU(C-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGGACG-G G--------- --------AA G(UGG----- 121 ---------- --UG------ )UUU------ -----|---- ------CC-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGAACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CC-CCGU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAA--- ---------- ---------- 481 GGA------- ------(--- -------GGA A------)-- -------|-- --UCCGCCCG 541 AGGA-GGG|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-CAAU AG)-CUUACC 601 AA|GGCGAUG AU-CAGUAGC UG|GUCC(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GC- U-GACGGA|G CAAUGCCGCG UGGAGGUAGA AGGCC(---C 781 ACG--)GG-U C--GUGAACU UC|UUUU-CC CGGAGAAGAA ---------- (--GCAA--) 841 ---------- UGACG-GU-A UCU-GGGGAA -UAAGCAUC- GGCU-AACU- CUGUG(CCA- 901 -GCAGCC-GC GGU---AA-) UACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUUUUAAG-| UCC-GCCGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-AG GCGGU--GGA -AAC-U-ACC -AA-G-CUGG AG-UA-CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 AAAGAACACC AAC---GGC( GAAA)GC-A- CUCUG-CUG- GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 -GAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG--UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC-UA|GG CG-CUGUGCG ------U--- --------(- 1441 -------AUC GA---)CC-- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---CGUGCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU-GGA GCAUGUGGUU UAAUUCG-(A UGCAAAG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-GCG--A A------UCC UCUU-----( 1741 GAA-A-)GAG AG-GGG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGCAUG| GCU-GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCC-AUCG- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --UUGAG--- )------UUU 2101 |GGAACCCUG AACAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAUCAUGCC CCUUAUGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG GGACAAAGGG UC----GCGA UCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----G-GU-G AGCUAACC-C CAA-AAACCC 2341 GUCCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU U..-....-- ---------- 2461 -------... .......... .......... .......... .......... .......... 2521 .......--- .......... .(........ .....--).. .-........ .......-.. 2581 ..-....... .......... .......... .......... .......(.. ..)....... 2641 .......... .......-|. .......... .......... .......... .....~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS Nico.ta8_C 2717 bp RNA RNA 02-JUL-1998 DEFINITION Nicotiana tabacum. ACCESSION No information KEYWORDS No information. SOURCE Nicotiana tabacum. ORGANISM Nicotiana tabacum. REFERENCE 1 AUTHORS Zoubenko,O.V., Allison,L.A., Svab,Z. and Maliga,P. TITLE plastid genome Efficient targeting of foreign genes into the tobacco JOURNAL Nucleic Acids Res. 22, 3819-3824 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: U12815|g559554 (bases 1 to 1324) complement legacy_attribute= Cloning vector pPRV112B common_name= common tobacco; tobacco; American tobacco BASE COUNT 331 a 314 c 430 g 249 t 1393 others ORIGIN 1 .......... .UCUCAUGGA GAG-UU(C-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGGACG-G G--------- --------AA G(UGG----- 121 ---------- --UG------ )UUU------ -----|---- ------CC-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGAACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CC-CCGU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAA--- ---------- ---------- 481 GGA------- ------(--- -------GGA A------)-- -------|-- --UCCGCCCG 541 AGGA-GGG|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-CAAU AG)-CUUACC 601 AA|GGCGAUG AU-CAGUAGC UG|GUCC(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GC- U-GACGGA|G CAAUGCCGCG UGGAGGUAGA AGGCC(---C 781 ACG--)GG-U C--GUGAACU UC|UUUU-CC CGGAGAAGAA ---------- (--GCAA--) 841 ---------- UGACG-GU-A UCU-GGGGAA -UAAGCAUC- GGCU-AACU- CUGUG(CCA- 901 -GCAGCC-GC GGU---AA-) UACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUUUUAAG-| UCC-GCCGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-AG GCGGU--GGA -AAC-U-ACC -AA-G-CUGG AG-UA-CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 AAAGAACACC AAC---GGC( GAAA)GC-A- CUCUG-CUG- GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 -GAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG--UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC-UA|GG CG-CUGUGCG ------U--- --------(- 1441 -------AUC GA---)CC-- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---CGUGCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU-GGA GCAUGUGGUU UAAUUCG-(A UGCAAAG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-GCG--A A------UCC UCUU-----( 1741 GAA-A-)GAG AG-GGG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGCAUG| GCU-GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCC-AUCG- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --UUGAG--- )------UUU 2101 |GGAACCCUG AACAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAUCAUGCC CCUUAUGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG GGACAAAGGG UC----GCGA UCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----G-GU-G AGCUAACC-C CAA-AAACCC 2341 GUCCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU U..-....-- ---------- 2461 -------... .......... .......... .......... .......... .......... 2521 .......--- .......... .(........ .....--).. .-........ .......-.. 2581 ..-....... .......... .......... .......... .......(.. ..)....... 2641 .......... .......-|. .......... .......... .......... .....~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS Bras.nap_C 2717 bp RNA RNA 02-JUL-1998 DEFINITION Brassica napus. ACCESSION No information KEYWORDS No information. SOURCE Brassica napus. ORGANISM Brassica napus. REFERENCE 1 AUTHORS Gao,X. JOURNAL Acta Genetica Sinica 16, 3-268 (1989) STANDARD No information COMMENTS common_name= forage rape; kale BASE COUNT 365 a 360 c 483 g 282 t 1227 others ORIGIN 1 ~~~~~~~~~~ ~UCUCAUGGA GAG-UU(C-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGGACG-G G--------- --------AA G(UGG----- 121 ---------- --UG------ )UUU------ -----|---- ------CC-- ACU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGAACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CC-CCGU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAA--- ---------- ---------- 481 GGA------- ------(--- -------GGA A------)-- -------|-- --UCCGCCCG 541 AGGA-GGG|G -CUCGCGU|- CGGAUUA-GC UAGUUGG-UG -AG(G-CAAU AG)-CUUACC 601 AA|GGCGAUG AU-CAGUAGC UG|GUCC(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGCCGCG UGGAGGUAGA AGGCC(---U 781 ACG--)GG-U C--CUGAACU UC|UUUU-CC CAGAGAAGAA ---------- (--GCAA--) 841 ---------- UGACG-GU-A UCU-GGGGAA -UAAGCAUC- GGCU-AACU- CUGUG(CCA- 901 -GCAGCC-GC GGU---AA-) UACAGAG|GA UGCAAGCGUU AU-CCGGA-U GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUUUUAAG-| UCC-GCCGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-AG GCGGU--GGA -AAC-U-ACC -AA-G-CUUG AG-UA-CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 AAAGAACACC AAC---GGC( GAAA)GC-A- CUCUG-CUG- GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 -GAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG--UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC-UA|GG CG-CUGUGCG ------U--- --------(- 1441 -------AUC GA---)CC-- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---CGUGCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU-GGA GCAUGUGGUU UAAUUCG-(A UGCAAAG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-GCG--A A------UCC UCUU-----( 1741 GAA-A-)GAG AG-GGG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGCAUG| GCU-GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCC-ACCG- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --UUGAG--- )------UUU 2101 |GGAACCCUG AACAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAUCAUGCC CCUUAUGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGG--CG GGACAAAGGG UC----GCGA UCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGU-G AGCUAACU-C CAA-AAACCC 2341 GUCCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAU GGGAGCUGG- CCAUGCCCGA 2521 AGUCGUU--- ACCUU-AACC -(-----GCA A------)-G G-AGG-GGG- GU-GCCG-AA 2581 GG-CAGGGCU AGUGACUGGA GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUUU~-|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS Adri.gla_C 2717 bp RNA RNA 02-JUL-1998 DEFINITION Adriana glabrata. ACCESSION No information KEYWORDS No information. SOURCE Adriana glabrata. ORGANISM Adriana glabrata. REFERENCE 1 AUTHORS Wilson,K.H. and Hills,H.G. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: L37578|g625012 common_name= euphorbialal dicotyledon plant BASE COUNT 348 a 340 c 459 g 266 t 1304 others ORIGIN 1 .......... .......... ...-..(... .)....|... .......... CGCUGGMCGG 61 CAUGCUU--A ACACAUGCAA GUCGGACG-G G--------- --------AA G(UGG----- 121 ---------- --UG------ )UUU------ -----|---- ------CC-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGAACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CC-CCGU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---MNAA--- ---------- ---------- 481 GGA------- ------(--- -------GGA A------)-- -------|-- --UCCNCCCG 541 AGGA-GGG|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-CAAU AG)-CUUACC 601 AA|GGUGAUG AU-CAGUAGC UG|GUCC(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGCCGCG UGGAGGUAGA AGGCC(---U 781 ACG--)GG-U C--GUGAACU UC|UUUU-CC CGGAGAAGAA ---------- (--GCAA--) 841 ---------- UGACG-GU-A UCU-GGGGAA -UAAGCAUC- GGCU-AACU- CUGUG(CCA- 901 -GCAGCC-GC GGU---AA-) UACAGAG|GA UNCAAGCGUW AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUUUUAAG-| UCC-GCCGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-AG GCGGU--GGA -AAC-U-GCC -AA-G-CUGG AG-UA-CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 AAAGAACACC AAC---GGC( GAAA)GC-A- CUCUG-CUG- GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 -GAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-AAGA UAC)CCCCAG UAG--UCCUA 1381 N-GCCGUAAA CGAUGGAU-- --AC-UG|GG CG-CUGUGCG ------U--- --------(- 1441 -------AUC GA---)CC-- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---CGUGCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|NCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGNCG 1621 GGGGCCC-GC ACA------- AGCGGU-GGA GCAUGUGGUU UAAUUCGA(U NCAAAAG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UV| -CC-GCG--A A------UCC UCUU-----( 1741 GAA-A-)GAG AG-GGG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGCAUG| NCU-GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCC-ACUG- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --UUGAG--- )------UUU 2101 |GGAACCCUG AGCAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAUCAUGCC CCUUAUGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG GGACAAAGGG UC----GCGA UCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGU-G AGCUAACU-C CAA-AAACCC 2341 GUCCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGUCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAU GGSMGCUGGN CCAUGCCCGA 2521 AGUCGUU--- ACCUU-AACC -(-----GCA A------)-G G-AGG-GGG- AU-GCCG-AA 2581 GG-CAGGGCU AGUGACUGGA GUGAAGUCGU AACAAGGUA. .......(.. ..)....... 2641 .......... .......-|. .......... .......... .......... .....~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS Ephr.pul_C 2717 bp RNA RNA 02-JUL-1998 DEFINITION Euphorbia pulcherrima. ACCESSION No information KEYWORDS No information. SOURCE Euphorbia pulcherrima. ORGANISM Euphorbia pulcherrima. REFERENCE 1 AUTHORS Wilson,K.H. and Hills,H.G. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: L37579|g625029 common_name= poinsettia BASE COUNT 345 a 336 c 455 g 266 t 1315 others ORIGIN 1 .......... .......... ...-..(... .)....|..C UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUGCAA GUCGGACG-G G--------- --------AA G(UGG----- 121 ---------- --UG------ )UUU------ -----|---- ------CC-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCU-C- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGAACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -NUGCUAAUA CC-CCGU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAA--- ---------- ---------- 481 GGA------- ------(--- -------GGA A------)-- -------|-- --UCCGCCCG 541 AGGA-GGG|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(N-CAAU AG)-CUUACC 601 AA|GGCGAUG AU-CAGUAGC UG|GUCC(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGCCGCG UGGAGGUAGA AGGCC(---U 781 ACG--)GG-U C--GUGAACU UC|UUUU-CC CGGAGAAGAA ---------- (--GCAA--) 841 ---------- UGACG-GU-A UCU-GGGGAA -UAAGCAUC- GNNU-ANCU- CUGUG(CCA- 901 -GCAGNC-GC GGU---AA-) UACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GN UUUUUAAG-| UCC-GCCGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-AG GNGGU--GGA -AAC-U-GCC -AA-G-CUCG AG-UA-CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 AAAGAACACC AAC---GGC( GAAA)GC-A- CUCUG-CUG- GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 -GAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG--UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC-UG|GG CG-CUGUGCG ------U--- --------(- 1441 -------AUU GA---)CC-- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---CGUGCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|CCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUG-CG 1621 GGGGCCC--C ACA------- AGCGGU-GGA GCAUGUGGUU UAAUUCG-(A UNCAAAG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-GCG--A A------UCC UCUU-----( 1741 GAA-A-)GAG AG-GGG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGCAUG| KCU-GUCGUC A|-G-CUCGU 1861 |NCC(GUAA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCC-ACUG- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --UUGAG--- )------UUU 2101 |GGAACCCUG AGCAGACUGC CGGU(GAUAA ----)----- ---------- ---------R 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAUCAUGCC CCUUAUGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG GGACAAAGGG UC----GCGA UCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGU-G ARCUAACU-C CMN-AAACCC 2341 GUCCUCAGUU CGGAUUUCAG GC(--UGCAA CUC)SCCUGC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGNGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGGCUUGUA CACACCGCCC GUCACACUAU GGGAGCUGG- CCAUGCCCGA 2521 AGUCGNU--- ACCUU-AACC -(-----GCA A------)-G G-AGG-GGG- AU-GCCG-AA 2581 GG-CAGGGCU AGUGACUGGA GUGAAGUCG. .......... .......(.. ..)....... 2641 .......... .......-|. .......... .......... .......... .....~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS Rici.com_C 2717 bp RNA RNA 02-JUL-1998 DEFINITION Ricinis communis. ACCESSION No information KEYWORDS No information. SOURCE Ricinis communis. ORGANISM Ricinis communis. REFERENCE 1 AUTHORS Wilson,K.H. and Hills,H.G. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: L37580|g625160 common_name= castor bean BASE COUNT 349 a 342 c 466 g 266 t 1294 others ORIGIN 1 .......... .......... ...-..(... .)....|..C UCAGGAUGAA CGC-UGGCGG 61 CAUGCUU--A ACACAUACAA GUCGGACG-G G--------- --------AA G(UGG----- 121 ---------- --UG------ )UUU------ -----|---- ------CC-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUAA GA-ACCUGC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------G 301 GGA------- --GGGGAACA ACAG------ ---------- --------CU G(GAAA)CGG 361 -CUGCUAAUA CC-CCGU-AG ---------- ---------- ---------- --------GC 421 U-------(G AGG---)--- ----AGC--- ---AAAA--- ---------- ---------- 481 GGA------- ------(--- -------GGA A------)-- -------|-- --UCCGCCCG 541 AGGA-GGG|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UG -AG(G-CAAU AG)-CUUACC 601 AA|GGCGAUG AU-CAGUAGC UG|GUCC(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GACACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGCCGCG UGGAGGUAGA AGGCC(---U 781 ACG--)GG-U C--GUGAACU UC|UUUU-CC CGGAGAAGAA ---------- (--GCAA--) 841 ---------- UGACG-GU-A UCU-GGGGAA -UAAGCAUC- GGCU-AACU- CUGUG(CCA- 901 -GCAGCC-GC GGU---AA-) UACAGAG|GA UGCAAGCGUU AU-CCGGAAU GAUUGGGC|G 961 UAAAGCGUCU GUAGGUG|GC UUUUUAAG-| UCC-GCCGUC AAAUCCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC CUGG-AC-AG GCGGU--GGA -AAC-U-GCC -AA-G-CUGG AG-UA-CGGU 1141 A-----GGGG CAGAG|GGAA UUUCCGG-UG GAGCG(GUGA AA)UGCGUAG AGA---UCGG 1201 AAAGAACACC AAC---GGC( GAAA)GC-A- CUCUG-CUG- GGCCG--A-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- CACUGACACU 1321 -GAG-AGACG AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG--UC-CU 1381 A-GCCGUAAA CGAUGGAU-- --AC-UG|GG CG-CUGUGCG ------U--- --------(- 1441 -------AUC GA---)CC-- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---CGUGCAG UGCU-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGUUC (GCAA)GAAU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU-GGA GCAUGUGGUU UAAUUCG-(A UGCAAAG)CG 1681 AAGAACCUUA CCAGGGCUUG ACA----UG| -CC-GCG--A A------UCC UCUU-----( 1741 GAA-A-)GAG AG-GGG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCG GACA|C|AGG UGGUGCAUG| GCU-GUCGUC A|-G-CUCGU 1861 |GCC(GUAA) GGUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UGUUUA-G-U 1921 UGCC-ACUG- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( --UUGAG--- )------UUU 2101 |GGAACCCUG AGCAGACUGC CGGU(GAUAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGAGGAUGA CGUC-AA--G UCAUCAUGCC CCUUAUGCCC UGGGCGAC-A 2221 CACGUGCUAC AAUGGC--CG GGACAAAGGG UC----GCGA UCCC------ ---------- 2281 ----(----G CGA-)----- ---------- ----GGGU-G AGCUAACU-C CAA-AAACCC 2341 GUCCUCAGUU CGGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGCCGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCCAU)AC GGCGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACUAU GGGAGCUGG- CCAUGCCCGA 2521 AGUCGUU--- ACCUU-AACC -(-----GCA A------)-G G-AGG-GGG- AU-GCCG-AA 2581 GG-CAGGGCU AGUGACUGGA GUG-AGUCGU .......... .......(.. ..)....... 2641 .......... .......-|. .......... .......... .......... .....~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS 2.11.2.3 2717 bp RNA RNA 09-JAN-1999 DEFINITION 2.11.2.3 CYANELLE_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.11.2.3 CYANELLE_GROUP. ORGANISM 2.11.2.3 CYANELLE_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 2717 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~-----~ ~~~~~~~~~~ ~~~~~~---- -----~~~~~ ~~~--~~~~~ 181 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--~ 301 ~~~------- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 -~~~~~~~~~ ~~~~~~~~~~ ---------- ---------- -------~~~ ~~~~~~~~~~ 421 ~~------~~ ~~~~~-~~-- ----~~~~~~ ~~~~~~~~~~ ~~-------- ---------- 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~-~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~-~~~~~ -~--~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 721 ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 781 ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 901 ~~~~~~~-~~ ~~~---~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~|~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~------ 1081 ---~~~~~~~ ~~~~~~~-~~ ~~~~~--~~~ ~~~~~~-~~~ -~~-~-~~~~ ~~-~~~~~~~ 1141 ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~---~~~~ 1201 ~~~~~~~~~~ ~~~~--~~~~ ~~~~~~~-~- ~~~~~-~~~~ ~~~~~--~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ~~~~~~~~~~ 1321 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~--~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~-- --~~-~~~~~ ~~-~~~~~~~ ~~~~~~~--- --------~- 1441 -------~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---------- 1501 ---------- ---------- ---------- --~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 1561 -~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~---~~| ~~~-~~~~~~ ~------~~~ ~~~~~~---~ 1741 ~~~-~~~~~~ ~~-~~~~~~~ ~~~~~~~--- ----~~~~~~ -----~~--- -----~~~~~ 1801 ~~-------- -----~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~-~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ 1921 ~~~~-~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------~ --~~~~~--- ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ----~~---- ---~~~~~~~ ~~~------~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 2221 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~---~~~~ ~~~~------ ---------- 2281 ----~----~ ~~~-~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~--~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- 2401 ---~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~-- ---------- 2461 -------~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~~ ~-~~~~~~~~ ~~~~~~~-~~ 2581 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS Cynp.par_C 2717 bp RNA RNA 02-JUL-1998 DEFINITION Cyanophora paradoxa. ACCESSION No information KEYWORDS No information. SOURCE Cyanophora paradoxa. ORGANISM Cyanophora paradoxa. REFERENCE 1 AUTHORS and Pace,N.R. Giovannoni,S.J., Turner,S., Olsen,G.J., Barns,S., Lane,D.J. TITLE chloroplasts Evolutionary relationships among cyanobacteria and green JOURNAL J. Bacteriol. 170, 3584-3592 (1988) STANDARD No information COMMENTS legacy_attribute= V.L. Stirewalt & D.Bryant, unpublished common_name= colorless flagellate alga NB: quite a few differences from Cynp.pa2_C BASE COUNT 384 a 336 c 457 g 318 t 1222 others ORIGIN 1 ~~~~~~~~~~ ~UACCAUGGA GAG-UU(U-G A)UCCU|GGC UCAGGAUGAA CGC-UGGCGG 61 UAUGCUU--A ACACAUGCAA GUCGAACG-A A--------- -------GAU C(GC------ 121 ---------- --AA------ )GAUC----- -----|---- ------UU-- AGU--GGCGG 181 ACGGGUGAGU AA-CGCGUGA GA-AUCUAC- CCUU------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------A 301 GGA------- --GGGGGACA ACAG------ ---------- --------UU G(GAAA)CGA 361 -CUGCUAAUA CC-CCAU-AU ---------- ---------- ---------- -------CCC 421 A-------(U UCG---)--- ----UGGU-- ---GAAA--- ---------- ---------- 481 AGA------- ------(--- -------GUA A------)-- -------|-- --UCUGCCUG 541 AGGA-AGA|G -CUCGCGU|- CUGAUUA-GC UAGUUGG-UG -GG(G-UAAA GG)-CCUACC 601 AA|GGCGACG AU-CAGUAGC UG|GUCU(GA GA)GGAUGAU CAGC|CACAC UGGGA(CUGA 661 GAUACG)GCC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUACCGCG UGAGGGAAGA CGGCC(---U 781 GUG--)GG-U U--GUAAACC UC|UUUU-CU UAGGGAAGAA ---------- (--UCAA--) 841 ---------- UGACG-GU-A CCU-AAGGAA -UAAGCAUC- GGCU-AACU- CCGUG(CCA- 901 -GCAGCC-GC GGU---AA-) UACGGAG|GA UGCAAGCGUU AU-CCGGAAU CAUUGGGC|G 961 UAAAGAGUUC GUAGGUG|GC UAAGCAAG-| UCU-GUUGUU AAAGGCUGGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UUA)ACC CCAA-AA-AG GCAAU--GGA -AAC-U-GUU -UG-G-CUUG AG-UA-CGGU 1141 A-----GGGG CAGAG|GGAA UUCCUGG-UG UAGCG(GUGA AA)UGCGUAG AUA---UCAG 1201 GAAGAACACC GAU---GGC( GAAA)GC-A- CUCUG-CUG- GGCCG--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- UACUGACACU 1321 -GAG-GAACG AAAGCUAGGG UAGCAAAUGG G(AUU-A-GA UAC)-CCCAG UAG--UC-CU 1381 A-GCCGUAAA CUAUGGAU-- --AC-UA|GG UG-UUGUGCG ------U--- --------(- 1441 -------AUC GA---)CC-- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---CGUACAG UACC-GUAGC (UAAC)GCGU 1561 -UAAGUAUCC |C|GCCUGGG GAGUACGCUC (GCAA)GAGU GAAACUCAAA GGAAUUGACG 1621 GGGGCCC-GC ACA------- AGCGGU-GGA GUAUGUGGUU UAAUUCG-(A UGCAACG)CG 1681 AAGAACCUUA CCAGGGUUUG ACA----UG| -UC-GCG--A A------UUU UCUU-----( 1741 GAA-A-)GAG AA-AAG---U G--CC----- ----(UUCG- -----)---- -----GGAA- 1801 ---------- -----|CGCG AACA|C|AGG UGGUGCAUG| GCU-GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UUUUUA-G-U 1921 UGCC-AUCA- -UUC------ ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( ---------- )----AGUUG 2101 |GGCACUCUA AAGAGACUGC CGGU(GACAA ----)----- ---------- ---------G 2161 CCGGAGGAAG GUGGGGAUGA CGUC-AA--G UCAGCAUGCC CCUUAUACCC UGGGCUAC-A 2221 CACGUACUAC AAUGGU--CG GGACAAUAGG UU----GCCA ACUU------ ---------- 2281 ----(----G CGA-)----- ---------- ----AAGU-G AGCUAAUC-C GUU-AAACCC 2341 GGCCUCAGUU CAGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGGUGG AAUCGCU--- 2401 ---AGUAAU- CGCCGG(UC- -AGCUAU)AC GGCGGUGAAU UC--GUU--- ---------- 2461 -------CCC GGGCCUUGUA CACACCGCCC GUCACACCAC GGGAGUCGG- CCAUGCCCGA 2521 AGUCGUU--- ACCCU-AACC -(----AUUU C------)-G G-AGG-GGG- AU-GCCU-AA 2581 GG-CAGGGCU GGUGACUGGG GUGAAGUCGU AACAAGGUAG CCGUACU(GG AA)GGUGCGG 2641 CUGGAUCACC UCCUUU.-|. .......... .......... .......... .....~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS 2.11.2.4 2717 bp RNA RNA 09-JAN-1999 DEFINITION 2.11.2.4 PSEUDANABAENA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.11.2.4 PSEUDANABAENA_GROUP. ORGANISM 2.11.2.4 PSEUDANABAENA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 2717) Corresponding GenBank entry: DIVIDER BASE COUNT 0 a 0 c 0 g 0 t 2717 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~-----~ ~~~~~~~~~~ ~~~~~~---- -----~~~~~ ~~~--~~~~~ 181 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--~ 301 ~~~------- --~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 -~~~~~~~~~ ~~~~~~~~~~ ---------- ---------- -------~~~ ~~~~~~~~~~ 421 ~~------~~ ~~~~~-~~-- ----~~~~~~ ~~~~~~~~~~ ~~-------- ---------- 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 541 ~~~~-~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~-~~~~~ -~--~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 721 ~~~~~~~~~~ -~~~~~~~~~ ~-~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 781 ~~~~~~~~~~ ~--~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ 901 ~~~~~~~-~~ ~~~---~~-~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~|~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~------ 1081 ---~~~~~~~ ~~~~~~~-~~ ~~~~~--~~~ ~~~~~~-~~~ -~~-~-~~~~ ~~-~~~~~~~ 1141 ~~----~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~---~~~~ 1201 ~~~~~~~~~~ ~~~~--~~~~ ~~~~~~~-~- ~~~~~-~~~~ ~~~~~--~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ~~~~~~~~~~ 1321 -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~-~~~~ ~~~~~~~~~~ ~~~--~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~-- --~~-~~~~~ ~~-~~~~~~~ ~~~~~~~--- --------~- 1441 -------~~~ ~~---~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---------- 1501 ---------- ---------- ---------- --~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 1561 -~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1681 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~---~~| ~~~-~~~~~~ ~------~~~ ~~~~~~---~ 1741 ~~~-~~~~~~ ~~-~~~~~~~ ~~~~~~~--- ----~~~~~~ -----~~--- -----~~~~~ 1801 ~~-------- -----~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~~~-~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ 1921 ~~~~-~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------~ --~~~~~--- ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ----~~---- ---~~~~~~~ ~~~------~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ 2221 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~---~~~~ ~~~~------ ---------- 2281 ----~----~ ~~~-~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~--~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- 2401 ---~~~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~~~~~~~~~ ~~~-~~~~-- ---------- 2461 -------~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~--- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~--~~~ ~-~~~~~~~~ ~~~~~~~-~~ 2581 ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~-~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS Psan.galea 2717 bp RNA RNA 02-JUL-1998 DEFINITION "Pseudanabaena galeata" str. CCC OL-75-PS. ACCESSION No information KEYWORDS No information. SOURCE "Pseudanabaena galeata" str. CCC OL-75-PS. ORGANISM "Pseudanabaena galeata". REFERENCE 1 AUTHORS and Pace,N.R. Giovannoni,S.J., Turner,S., Olsen,G.J., Barns,S., Lane,D.J. TITLE chloroplasts Evolutionary relationships among cyanobacteria and green JOURNAL J. Bacteriol. 170, 3584-3592 (1988) STANDARD No information COMMENTS isolate_name= CCC OL-75-PS BASE COUNT 255 a 212 c 289 g 207 t 1754 others ORIGIN 1 .......... .......... ...-..(... .)....|... .......... .......... 61 .......... .......... .......... .......... .......... .(........ 121 .......... ....-----. )......... .....|---- -----..... ...--..... 181 .......... ..-....... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......--. 301 ...------- --........ .......... .......... .......... .(GAAA)UGA 361 -CUGCUAAUA CC-GGAU-GU ---------- ---------- ---------- --------GC 421 U-------(U C-G---)--- ----GGU--- ---GAAA--- ---------- ---------- 481 G--------- ------(--- -------UUN A------)-- -------|-- ----UGCCUG 541 UAGA-UGA|G -CUUGCGU|- CCGAUUA-GC UAGAUGG-AG -UG(G-UAAC GG)-CACACC 601 AU|GGCGACG AU-CGGUAAC UG|GUCU(GA GA)GGAUGAC CAGU|CACAC UGGAA(CUGA 661 GACACG)GUC CAGA-C--UC C(UA-CG)GG -A--GGCAG- CAGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-NACGGA|G CAAUACCGCG UGAGGGACGA AGGUC(---U 781 GUN--)GA-U U--GUAAACC UN|UUUU-GU NAGGGAAGA- ---------- (--UAAU--) 841 ---------- -GANN-GU-A CCUACACGAA -UAAGCAUC- GGCU-AUCU- .....(.... 901 .......-.. ...---..-) .......|.. .......... ..-....... ........|. 961 .......... .......|.U UUUAUAAG-| UCU-GUUGUC AAA-CCCAGG GC(------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---UCA)ACC UUGG-AA-AG GCAAU--GGA -AAC-U-GUG -AG-A-CUAG AG-AG-AGAU 1141 A-----GGGG CAGGA|GGAA UUCCAGG-UG UAGCG(GUGA AA)UGCGUAG AUA---UCUG 1201 GAAGAACACC AGU---GGC( GAAA)GC-G- UCCUG-CUG- GAUCU--C-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- AACUGACGCU 1321 -GAA-GUACN AAAGCUAGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG--UC-CU 1381 A-GCCGUAAA CGAUGGGU-- --AC-UA|GG UG-UUGGCCG ------U--- --------(- 1441 -------AUN NA---)CC-- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---CGGUCAG UGCC-GUACG (UAAC)GCGU 1561 -UAAGUACCC |C|GCCUGGG GAGUACGGUC (GCAA)GAU. .......... .......... 1621 .......... .......... ......-... .......... ........(. .......).. 1681 .......... .......... ....---..| ...-...... .------... ......---( 1741 ...-..)... ..-....... G--C------ ----(U-CG- -----)---- -----GGAG- 1801 ---------- -----|CGCG AASA|C|AGG UGGUGCAUG| GCU-GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CAACCCUCG| UAUUUA-G-U 1921 UGCC-AUCA- -UUA------ ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( ---------- )----AGUUG 2101 |GGCRCUCUA GAUAGACUGC CGGU(GACAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GUGGGGAUGA CGUC-AA--G UCAUCAUGCC CCUUACGCCU UGGGCUAC-A 2221 CACGUACUAC AAUGGC--CG GGACAAAGAG UC----GCGA GCAU------ ---------- 2281 ----(----G CGA-)----- ---------- ----AUGC-A AGCUAAUC-U CAU-AAACCC 2341 NNUCUUAGUU CAGAUUGCAG GC(--UGCAA CUC)GCCUGC AUGAAGGCGG AAUCGCU--- 2401 ---AGUAAU- CGCAGG(UC- -AGC-AU)AC UGCGGUNAAU AC.-....-- ---------- 2461 -------... .......... .......... .......... .......... .......... 2521 .......--- .......... .(........ .....--).. .-........ .......-.. 2581 ..-....... .......... .......... .......... .......(.. ..)....... 2641 .......... .......-|. .......... .......... .......... .....~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| // LOCUS Psan.6903 2717 bp RNA RNA 02-JUL-1998 DEFINITION "Pseudanabaena" sp.. ACCESSION No information KEYWORDS No information. SOURCE "Pseudanabaena" sp. ORGANISM "Pseudanabaena" sp. REFERENCE 1 AUTHORS and Pace,N.R. Giovannoni,S.J., Turner,S., Olsen,G.J., Barns,S., Lane,D.J. TITLE chloroplasts Evolutionary relationships among cyanobacteria and green JOURNAL J. Bacteriol. 170, 3584-3592 (1988) STANDARD No information BASE COUNT 204 a 188 c 256 g 178 t 1891 others ORIGIN 1 .......... .......... ...-..(... .)....|... .......... .......... 61 .......... .......... .......... .......... .......... .(........ 121 .......... ....-----. )......... .....|---- -----..... ...--..... 181 .......... ..-....... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......--. 301 ...------- --........ .......... .......... .......... .(....)... 361 -......... .......... ---------- ---------- -------... .......... 421 ..------(. .....-).-- ----...... .......... ..-------- ---------- 481 .......... ......(... .......... .......).. .......|.. .......... 541 ....-...|. -.......|. ...AUUA-GC UAGAUGG-UG -GG(G-UAAC GG)-CCUACC 601 AU|GGCGACG AU-CGAUNAC UG|GUCU(GA GA)GGAUGAC CAGN|CNCNC UGGGA(CUGA 661 GACNCG)GCC NNNC-C--UC C(UA-CG)GG -A--GNCNG- CNGUGGGG-A AUUUUCCG-C 721 AAU-GGGC-( -GAAA)-GCC U-GACGGA|G CAAUGCCGCG UGAGGGACGA AGGUC(---U 781 GUG--)GA-U U--GUNAACC NN|UUUU-GU UGGGGAAGAU ---------- (-GAUAA--) 841 ---------- UGACG-GU-A CCC-AACGAA -UAAGCAUC- GGCU-AACU- .....(.... 901 .......-.. ...---..-) .......|.. .......... ..-....... ........|. 961 .......... .......|.. ........-| ...-...... .......... ..(....... 1021 .......... .......... .......... .......... .......... ....------ 1081 ---...)... .......-.. .....--... ...CGU-GUG -AG---CUAG AG-NG-AGAU 1141 A-----GGGG NAGGA|GGAA UUCCAGG-UG UAGCG(GUGA AA)UGCGUAG AUA---UCUG 1201 GAAGAACACC AGU---GGC( GAAA)GC-G- UCCUU-CUG- GAUCU--U-- ---------- 1261 ---------- ---------- ---------- ---------- ---------- AACUGACGCU 1321 -GAA-GUACN NAAGCUAGGG GAGCGAAUGG G(AUU-A-GA UAC)-CCCAG UAG--UC-CU 1381 A-GCCGUAAA CGAUGGAC-- --AC-UA|GG UG-UUGGCCG ------U--- --------(- 1441 -------AUC GA---)CC-- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---CGGUCAG UGCC-GUACG (UAAC)GCGU 1561 -UAAGUGUCC |N|GCCUGGG GAGUACGGUC (GCAA)GAU. .......... .......... 1621 .......... .......... ......-... .......... ........(. .......).. 1681 .......... .......... ....---..| ...-...... .------... ......---( 1741 ...-..)... ..-....... .......--- ----(..... -----).--- -----..... 1801 ..-------- -----|.... ...A|C|AGG UGGUGCAUG| GCU-GUCGUC A|-G-CUCGU 1861 |GUC(GUGA) GAUGUUGGG( UUAAGU)CCC GCAACGAGCG CUUCCCUCG| UAUUUA-G-U 1921 UGCC-AUCA- -UUA------ ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------( ---------- )----AGUUG 2101 |GGCACUCUA GAUAGACUGC CGGU(GACAA ----)----- ---------- ---------A 2161 CCGGAGGAAG GUGGGGAUGA CGUC-AA--G UCAUCAUGCC CCUUACGCCU UGGGCUAC-A 2221 CACGUACUAC AAUGGC--CG GGACAAAGAG UC----GCAA GCAU------ ---------- 2281 ----(----G CGA-)----- ---------- ----AUGC-A AGCCUAUC-U CAU-AAACCC 2341 NGUCUUAGUU CAGAUUGCAG GC(--UGCAA CUC)GCCUNC AUGNAGGCGG AAUCGCU--- 2401 ---AGUAAU- CGCAGG(UC- -AGC-AU)AC UGCGGUNAAU AC--GUU--- ---------- 2461 -------C.. .......... .......... .......... .......... .......... 2521 .......--- .......... .(........ .....--).. .-........ .......-.. 2581 ..-....... .......... .......... .......... .......(.. ..)....... 2641 .......... .......-|. .......... .......... .......... .....~~~~~ 2701 ~~~~~~~~~~ ~~~~~~| //