LOCUS TTRRNA DEFINITION Fragments of a Tetrahymena gene for 26s rRNA (with intron). ACCESSION V01416 J01235 VERSION V01416.1 GI:10840 KEYWORDS 26S ribosomal RNA; ribosomal RNA. SOURCE Tetrahymena thermophila. ORGANISM Tetrahymena thermophila Eukaryota; Alveolata; Ciliophora; Oligohymenophorea; Hymenostomatida; Tetrahymenina; Tetrahymena. REFERENCE 2 (bases 1 to 517) AUTHORS Pyle,A.M., Murphy,F.L. and Cech,T.R. TITLE RNA substrate binding site in the catalytic core of the Tetrahymena ribozyme JOURNAL Nature 358 (6382), 123-128 (1992) MEDLINE 92310586 FEATURES Location/Qualifiers source 1..517 /organism="Tetrahymena thermophila" /db_xref="taxon:5911" precursor_RNA <1..>517 /note="primary transcript" rRNA <1..52 /note="26s rRNA exon" intron 53..465 /note="intron" rRNA 466..>517 /note="26s rRNA exon" BASE COUNT 154 a 99 c 133 g 131 t ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~U||aaa( 61 -uagcaauau uuacc----- ---------- ---------- ---------- ---------- 121 ---------- ---------- --)------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- --------|u uu|Ggaggg- |aaa-|AGUu 661 aucagg---- ---------- ---------- ---------( caugca---- ---------- 721 ---------- ---------- ---------- ---------- ---------) ---------- 781 ------ccug g-uaGCU|A- |GUC-Uu--- uaaacc-|(a auaga----- ---|------ 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- |--uugcau- 1021 c-|------- ---------- ---------- ---------- ---------- -------ggu 1081 uua--aaAGG C|-AA|GACC -GUC|AAAU| UG-CGGG|aa ag|G-GG--- (--uca--ac 1141 AG|CCGu--U CAGU-ACCA- ---|------ ---------- ----|----- A|-G-UCU-C 1201 -A-GGG-(GA AA--)CUU-U G-A-GA-UG- G|-----CC- U-----(UGC AA--)----- 1261 --A-GG|GUA UGGUAAUAA- GCUG-A-C-G G|acaugg|- ---------- --(-----)- 1321 ---------- ------UCC| -UAA|CCACG CA|GCC-|AA -|GUCC---- ----(----- 1381 ---------- ---------- )|U|AA---- |gucaacag- ---------( aucuu----- 1441 ---------- ----)|---- ------cugu -u-g-au|A| U--------- -G-GAU|-G| 1501 CAGU|-UCA| CAGACUA|-A AU|GUCGG-U C|G|GGGaag a--------( uguau----- 1561 ---------- ---------- ---------- ---------- ---)------ --ucuuCUCA 1621 |UAAGAUA|U AGUCG|-|GA -|ccu|cucc u---(UAAU- ----)----g ggag|---|c 1681 uagcgg---- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---- auga---|ag ug------(- 1801 augcaa---- )|----cacu |----gga-g |-------cc gcugg|---g |aacuaauuu 1861 guaugc---- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ------|--- ---------| (gaaa----- ---------) |--------- 1981 ---------- ---------- ----guauau ugauuaguu| -|-------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---|uuggag uac----|UC 2221 |G||uaaggu agccaaaugc cucgucaucu aauuagugac gcgca~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS MASK DEFINITION MASK ACCESSION NONE VERSION NONE KEYWORDS NONE SOURCE MASK ORGANISM MASK REFERENCE NONE AUTHORS NONE TITLE NONE JOURNAL NONE MEDLINE NONE FEATURES NONE ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~++++ ++++||+--- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ----+++|++ |++++++--- ---------- ---------- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 -----+++++ +|+++|++++ ++++|++++| +++++++|++ ++|++++--- ---------- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ------+++| ++++|+++++ ++|++++|++ +|++++---- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- -+++++|++| 1501 ++++|++++| +++++++|++ ++|+++++++ +|+|+++--- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- -----+++++ 1621 |+++++++|+ +++++|+|++ +|+++|++++ ++++++++++ ++++++++++ ++++------ 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- ---------- -------|++ ++++++++++ 1801 ++++++++++ ++++++++++ ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- --------++ 2221 |+||~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS AB055864 DEFINITION Stichococcus bacillaris gene for 18S rRNA, partial sequence, strain:CCAP379/7. ACCESSION AB055864 VERSION AB055864.1 GI:13122408 KEYWORDS . SOURCE Stichococcus bacillaris (strain:CCAP379/7) DNA. ORGANISM Stichococcus bacillaris Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Microthamniales; Stichococcus. REFERENCE 2 (bases 1 to 3184) AUTHORS Hanagata,N. TITLE Direct Submission JOURNAL Submitted (15-FEB-2001) Nobutaka Hanagata, The University of Tokyo, Research Center for Advanced Science and Technology; Komaba 4-6-1, Meguro-ku, Tokyo 153-8904, Japan (E-mail:hanagata@bio.rcast.u-tokyo.ac.jp, Tel:81-3-5452-5320, Fax:81-3-5452-5321) MEDLINE NONE FEATURES Location/Qualifiers source 1..3184 /organism="Stichococcus bacillaris" /strain="CCAP379/7" /db_xref="taxon:37433" rRNA join(<1..564,1023..1376,2091..2693,3165..>3184) /product="18S ribosomal RNA" intron 565..1022 intron 1377..2090 intron 2694..3164 BASE COUNT 778 a 756 c 905 g 745 t ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~gggcaaguc uggU||g--( 61 ggcua-ucaa c(gccaucau uuaaaaugcu )--guuga-- ---------- ---------- 121 ---------- ---------- --)------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- --------|- -c|Gccaga- |gau-|AGUg 661 gg-------- ---------- ---------- ---------( gcagcuug-( gaaa---)-c 721 gagcuguuau g--------- ---------- ---------- ---------) ---------- 781 ---------- c-cuGCU|A- |guc-gau-g cagccg-|(a cuccu----- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- |--gau-cg- 1021 gg|------- ---------- ---------- ---------- ---------- ------)--- 1081 uggcugccgg c|-aa|GACG ACCU|GGA-| AC-GGGG|aa --|g-gccc- (-------uc 1141 ac|cuccuuu gc-------- ---|(ccug- ---------- ---)------ ---------- 1201 ---------- ---------- ---------- ---------- ---------- ----)----- 1261 ---------- --------g- cgga-g-g-a g|acau--|- ---------- --(-----)- 1321 ---------- ----ggguu| --aa|UC-CC GU|GGC-|GA -|gcuggugc ggg-(guga- 1381 ---------- ---------- )|-|------ |--------- ---------( ---------- 1441 ---------- ----)|---- ---------- -------|-| ---ccugcac aacagc|--| 1501 CGUC|-GUA| ACGCACG|-G UA|AGGCG-U C|g|gccgac ucuc-----( uuucuuauuu 1561 ugauc----- ---------- ---------- ---------- ---)-----g agagccggcu 1621 |UAAGGGA|C GUGCU|A|AA -|cc-|cacc c---(gauga gaaa)----g ggug|---|c 1681 ccuggac--- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---- auga---|ga g-------(c 1801 ccgauc---- )|-----cuc |-----gaag |------guc cgugg|---g |aggca---- 1861 ------(-ag a--------- ---------- ---------- ---------- ---------- 1921 ---------- -------gug uu--ggaag| (gaaa----- ---------) |uguccagac 1981 ac-------- ---------- ---------- ----ugccu| -|ggua---- --ucagucaa 2041 ------ucag aagcucucac acacaugugc aguuguguga guggauauga cguca----- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- -------|UU 2221 |G||gccagc agccgcggua auu~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS PBU18981 DEFINITION Plasmodiophora brassicae small subunit ribosomal RNA gene. ACCESSION U18981 NID g1066346 VERSION U18981.1 GI:1066346 KEYWORDS . SOURCE Plasmodiophora brassicae. ORGANISM Plasmodiophora brassicae Eukaryota; Plasmodiophorida; Plasmodiophoridae; Plasmodiophora. REFERENCE 3 (bases 1 to 3026) AUTHORS Castlebury,L.A. TITLE Direct Submission JOURNAL Submitted (21-DEC-1994) Lisa A. Castlebury, National Center for Toxicological Research, Division of Microbiology, 3900 NCTR Drive, Jefferson, AR 72079, USA MEDLINE NONE FEATURES Location/Qualifiers source 1..3026 /organism="Plasmodiophora brassicae" /specific_host="Brassica spp." /db_xref="taxon:37360" /lab_host="Brassica pekinensis (Lour.) Rupr." /dev_stage="resting spores" primer_bind complement(1..21) /citation=[1] /citation=[2] exon 1..566 /citation=[1] /citation=[2] rRNA join(1..566,955..1582,1966..2556,2999..3026) /evidence=experimental /product="small subunit ribosomal RNA" intron 567..954 /citation=[1] exon 955..1582 /citation=[1] /citation=[2] intron 1583..1965 /citation=[1] exon 1966..2556 /citation=[1] /citation=[2] intron 2557..2998 /citation=[1] exon 2999..3026 /citation=[1] /citation=[2] primer_bind 3003..3026 /citation=[1] /citation=[2] BASE COUNT 757 a 680 c 843 g 744 t 2 others ORIGIN 1 |aaugagaac aaguuaaacc uauuaucgag gauccauugg agggcaaguc uggU||g--( 61 gacgauucga cag(-ugucu guuug----- )cuguugg-- ---------- ---------- 121 ---------- ---------- --)------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- --------|- -c|Gccaga- |gau-|AGUa 661 cg-------- ---------- ---------- ---------( gcuucu---( cuuuuaa)-- 721 -agaaguuau g--------- ---------- ---------- ---------) ---------- 781 ---------- c-guGCU|A- |guc-ga--g cagcc--|(c aaucu-ag-- ---|------ 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- |--uug-ug- 1021 gg|------- ---------- ---------- ---------- ---------- ---c-u)--- 1081 -ggcugccgg c|-ga|GGUA ACCU|GGU-| AC-GAGG|aa --|g-gc--- (------uua 1141 ac|ggauu-- ---------- ---|-uuuga u--------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ----)----- 1261 ---------- ---------- ---a-a-u-c c|uau---|- ---------- --(-----)- 1321 ---------- ------gcu| --aa|UC-UC GU|GGC-|GA -|gccugugc cgaa(gcga- 1381 ---------- ---------- )|-|------ |--------- ---------( ---------- 1441 ---------- ----)|---- ---------- -------|-| uucgggcaua ga-ggc|--| 1501 CGUC|-GUA| ACGCGCG|-G AA|AGGUA-C C|g|ggcggg cu-------( uccac----- 1561 ---------- ---------- ---------- ---------- ---)------ -aguccg-cu 1621 |CAAGGAA|C GUGCU|-|AA u|cc-|cauu c---(gaaa- ----)----g aa--|a--|a 1681 ugccugaucg acu------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---- ggua---|gc g-------(c 1801 ccacaa---- )|-----cgc |-----aaag |gacgaucgu gcagu|gugu |ggcgcgu-- 1861 -------g-- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ------|uga ugga-----| (ggaa----- ---------) |ugc-cau-- 1981 ---|------ ---------- --------ca gacgagacc| c|ggu----- ---------| 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---|------ auaug--|uu 2221 |G||gccagc agccgcggua auuccagcuc caauagcgua uauuaaag~~ ~~~~~~~~~| 2281 |||| // LOCUS AF110343 DEFINITION Roccella canariensis Myllys 132 (S) small subunit ribosomal RNA gene, partial sequence. ACCESSION AF110343 NID g5730466 VERSION AF110343.1 GI:5730466 KEYWORDS . SOURCE Roccella canariensis. ORGANISM Roccella canariensis Eukaryota; Fungi; Ascomycota; Euascomycetes; Loculoascomycetes; Arthoniales; Roccellaceae; Roccella. REFERENCE 3 (bases 1 to 1390) AUTHORS Myllys,L. TITLE Direct Submission JOURNAL Submitted (02-DEC-1998) Department of Botany, University of Stockholm, Lilla Frescativaegen 5, Stockholm S-106 91, Sweden MEDLINE NONE FEATURES Location/Qualifiers source 1..1390 /organism="Roccella canariensis" /specimen_voucher="Myllys 132 (S)" /db_xref="taxon:72318" rRNA join(<1..259,327..360,426..488,688..784,1137..>1390) /product="small subunit ribosomal RNA" BASE COUNT 318 a 328 c 387 g 349 t 8 others ORIGIN 1 |~~~~~~~~~ ~~~~uaaaua ccuuaacgag gaacaauugg agggcaaguc uggU||g--( 61 gacg---a-g aug--uccca gcggcauagc acugcuga-- ---------- ---------- 121 ---------- ---------- --)------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- --------|- -c|Gccaga- |aau-|AGCg 661 gg-------- ---------- ---------- ---------( gcuuu----- ---------- 721 ---------- ---------- ---------- ---------- ---------) ---------- 781 ---------c c-ccGUG|G- |guc-ga--g caccc--|(g agucc-ccgc gu-|------ 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- |--ggu-ag- 1021 gg|------- ---------- ---------- ---------- ---------- ------)--- 1081 -gggugccgg c|-ga|GACA ACCU|GGG-| UC-GGGG|ga --|g-gu--- (--------c 1141 uu|gggugag ccgcuu---- ---|(gauu- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ----)----- 1261 ---------- -----gagc- gguc-c-u-c c|u-----|- ---------- --(-----)- 1321 ---------- ------gcu| --aa|UC-CC GA|GCG-|Gn -|nccu---- ----(acg-- 1381 ---------- ---------- )|-|------ |--------- ---------( ---------- 1441 ---------- ----)|---- ---------- -------|-| ---------g nn-nnn|--| 1501 CCGU|-GUA| GAGCGCG|-C AC|AGGUG-U C|g|gccag- ---------( ccucugu--- 1561 ---------- ---------- ---------- ---------- ---)------ ----cuggcu 1621 |UAAGGGA|C GUGCC|a|uc -|cc-|cgcu c---(gaaa- ----)----g agcg|---|c 1681 cucggg---- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|--uc caag---|cu --------(c 1801 ccuacucugc )|-----gag |-------gc |-------cc cgagg|---- |aaccccg-- 1861 ------(auc auc------- ---------- ---------- ---------- ---------- 1921 ---------- ------|--- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- --ugggguu| -|gggucccc nga------| 2041 guu------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ----ucgggg gau|------ uuuua--|ga 2221 |G||gccagc agccgcggua auuccagcuc caauagcg~~ ~~~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS AB045703 DEFINITION Tilletiopsis flava gene for 18S rRNA, partial sequence. ACCESSION AB045703 VERSION AB045703.1 GI:14626070 KEYWORDS . SOURCE Tilletiopsis flava (strain:JCM 10219) DNA. ORGANISM Tilletiopsis flava Eukaryota; Fungi; Basidiomycota; Ustilaginomycetes; Exobasidiomycetidae; Georgefischeriales; Tilletiariaceae; mitosporic Tilletiariaceae. REFERENCE 2 (bases 1 to 2842) AUTHORS Takashima,M. TITLE Direct Submission JOURNAL Submitted (06-JUL-2000) Masako Takashima, RIKEN (The Institute of Physical and Chemical Research), Japan Collection of Microorganisms; 2-1 Hirosawa, Wako, Saitama 351-0198, Japan (E-mail:masako@jcm.riken.go.jp, Tel:81-48-467-9560, Fax:81-48-462-4617) MEDLINE NONE FEATURES Location/Qualifiers source 1..2842 /organism="Tilletiopsis flava" /strain="JCM 10219" /db_xref="taxon:58914" rRNA join(<1..503,836..1703,2038..2376,2812..2842) /product="18S ribosomal RNA" intron 504..835 /note="group I intron" intron 1704..2037 /note="group I intron" gene 2377..2811 /gene="group I intron" intron 2377..2811 /gene="group I intron" BASE COUNT 724 a 619 c 786 g 713 t ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~gg agggcaaguc uggU||g--( 61 aaca--ucag u(gcu----- )--------- ---acuga-- ---------- ---------- 121 ---------- ---------- --)------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- --------|- -c|Gccagu- |aag-|AGCa 661 gg-------- ---------- ---------- ---------( cauaaguauc a--------- 721 ---------- ---------- ---------- ---------- ---------) ---------- 781 ---------- c-cuGCU|A- |guc-gau-g cgagu--|(u uccac-cu-- ---|------ 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- |--ucu-ug- 1021 gg|------- ---------- ---------- ---------- ---------- ---u--)--- 1081 -gcucgccgg c|-ga|GGUA ACCU|UGU-| AC-GGGG|ga --|c-ucu-- (-------ac 1141 ag|caucg-- ---------- ---|(guau- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ------)--- ----)----- 1261 ---------- ---------- ---c-g-a-u g|ac----|- ---------- --(-----)- 1321 ---------- ------gag| --aa|UC-CC GU|GGC-|GA -|gccgc--- ----(gcaa- 1381 ---------- ---------- )|-|------ |--------- ---------( ---------- 1441 ---------- ----)|---- ---------- -------|-| ---------- g-----|--| 1501 CGUU|cGUA| ACGCGCG|-C AA|AGGUA-C C|g|guucua uu-------( ucau------ 1561 ---------- ---------- ---------- ---------- ---)------ -gauagagcu 1621 |CAAGGGA|C GUGCU|a|uu -|cc-|cgcu c---(gaaa- ----)----g agcg|u--|c 1681 ugccgc---- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---- -ugg---|ag cc------(c 1801 ccaaga---- )|----ggcu |------aag |-------gu gacgg|---a |gagcga--- 1861 ---------- ---------- ---------- ------agcc gcagg----- ---------- 1921 ---------- ---------- ----ag---- -gaaa----- ---------- -ugccugcgg 1981 ---|aug--- ---------- ---------- -ucaagcuc| -|gguagauu cau------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- --------aa 2221 |G||-ccagc agccgcggua auuccag~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS AB027318 DEFINITION Cordyceps capitata DNA for 18S ribosomal RNA. ACCESSION AB027318 VERSION AB027318.1 GI:7619916 KEYWORDS . SOURCE Cordyceps capitata DNA. ORGANISM Cordyceps capitata Eukaryota; Fungi; Ascomycota; Hypocreales; Clavicipitaceae; Cordyceps. REFERENCE 2 (bases 1 to 2235) AUTHORS Nikoh,N. TITLE Direct Submission JOURNAL Submitted (17-MAY-1999) to the DDBJ/EMBL/GenBank databases. Naruo Nikoh, NIBH, Insect-Parasitic Symbiotic Microorganisms Research Group; 1-1 Higashi, Tsukuba, Ibaraki 305-8566, Japan (E-mail:nikoh@nibh.go.jp, Tel:81-298-54-6087, Fax:81-298-54-6080) MEDLINE NONE FEATURES Location/Qualifiers source 1..2235 /organism="Cordyceps capitata" /db_xref="taxon:45235" rRNA 1..2235 /product="18S ribosomal RNA" BASE COUNT 510 a 565 c 670 g 490 t ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~aauugg agggcaaguc uggU||g--( 61 aac------- -----gucgc ugg------- ---------- ---------- ---------- 121 ---------- ---------- --)------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- --------|- -c|Gccaga- |gau-|AGCc 661 g--------- ---------- ---------- ---------( cccucgguaa acaac----- 721 ---------- ---------- ---------- ---------- ---------) ---------- 781 ---------- --cgGCU|A- |guc-ga--g cgcucg-|(u ugcg------ ---|------ 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- |--uga-cg- 1021 gg|------- ---------- ---------- ---------- ---------- ------)--- 1081 ugagcgccgg c|-ga|GACA ACCU|GGA-| UC-GGGG|aa --|g-gc--- (--------u 1141 aa|gggccc- ---------- ---|(cgc-- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ------)--- ----)----- 1261 ---------- ---------- --gg-g-c-c u|a-c---|- ---------- --(-----)- 1321 ---------- ------gcu| --ga|UC-CC GA|GCA-|GA -|gccac--- ----(gcccg 1381 ---------- ---------- )|-|------ |--------- ---------( ---------- 1441 ---------- ----)|---- ---------- -------|-| ---------- gu-ggc|--| 1501 CUGU|-GUA| GAGCGCG|-C CA|AGGUG-U C|g|gucccg agg------( ucu------- 1561 ---------- ---------- ---------- ---------- ---)------ ccucggggcu 1621 |UAAGGUA|C GUGCC|-|AA -|uc-|cccu gc--(gaaa- ----)---gc aggg|---|c 1681 ccugcgg--- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---- aaca---|gc a-------(c 1801 ccgucg---- )|-----ugc |-----gaag |------ccg caggg|---a |gccccccu- 1861 ------(ccc c--------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- -gggggggc| -|gugugcua ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- -------|cA 2221 |G||gccagc agccgcggua auuccag~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS AB003944 DEFINITION Trichocoma paradoxa gene for 18S rRNA, strain IFO 30659, partial sequence. ACCESSION AB003944 NID g6172359 VERSION AB003944.1 GI:6172359 KEYWORDS 18S ribosomal RNA; 18S rRNA. SOURCE Trichocoma paradoxa (strain:IFO 30659) DNA. ORGANISM Trichocoma paradoxa Eukaryota; Fungi; Ascomycota; Plectomycetes; Eurotiales; Trichocomaceae; Trichocoma. REFERENCE 2 (bases 1 to 2196) AUTHORS Ogawa,H. TITLE Direct Submission JOURNAL Submitted (16-MAY-1997) to the DDBJ/EMBL/GenBank databases. Hiroyuki Ogawa, The University of Tokyo, Institute of Molecular and Cellular Biosciences; Yayoi 1-1-1, Bunkyo-ku, Tokyo 113, Japan (E-mail:KFR00124@niftyserve.or.jp, Tel:03-3812-2111, Fax:03-3818-0444) MEDLINE NONE FEATURES Location/Qualifiers source 1..2196 /organism="Trichocoma paradoxa" /strain="IFO 30659" /db_xref="taxon:76771" rRNA join(<1..542,962..>2196) /product="18S rRNA" exon <1..542 intron 543..961 /note="Group I intron" exon 962..>2196 BASE COUNT 552 a 495 c 615 g 534 t ORIGIN 1 |~~~~~~~~~ ~~ucuaaaua ccuuaacgag gaacaauugg agggcaaguc uggU||g--( 61 aacca-ucag u(uccaccau )--------- ---gcuga-- ---------- ---------- 121 ---------- ---------- --)------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- --------|- -c|Gccaga- |gau-|AGUa 661 gg-------- ---------- ---------- ---------( gcccucuc-( uccg---)-g 721 ggaggguuau g--------- ---------- ---------- ---------) ---------- 781 ---------- c-cuGCU|A- |guc-ga--g cacucg-|(c aaucg----- ---|------ 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- |--cga-ug- 1021 gg|------- ---------- ---------- ---------- ---------- ------)--- 1081 ugagugccgg c|-ga|GGUG ACCU|GGU-| AC-GGGG|aa --|g-cc--- (--------u 1141 aa|gggug-- ---------- ---|-cggcc cacaagggag gccaguaa-- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ----)----- 1261 ---------- ---------- ---c-a-u-c u|au----|- ---------- --(-----)- 1321 ---------- ------ggu| --aa|UC-CC GU|GGC-|GA -|gccug--- ----(uuug- 1381 ---------- ---------- )|-|------ |--------- ---------( ---------- 1441 ---------- ----)|---- ---------- -------|-| ---------- ca-ggc|--| 1501 CGUC|-GUA| ACGCGCG|-G AA|AGGCA-C C|g|gucacu a--------( caggu----- 1561 ---------- ---------- ---------- ---------- ---)------ --uaguggcu 1621 |CAAGGGA|C GUGCU|-|GU -|cc-|cauc c---(gaaa- ----)----g gaug|---|c 1681 -uucaac--- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---- ugga---|gc a-------(c 1801 ccaucg---- )|-----ugu |-----aaag |------guu gaagg|---- |aggcuuaca 1861 gc----(--- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ------|--- ---------- |(aggcc--- ---------) |--------- 1981 ---|------ ---------- --------gc uguaagccu| -|gggaguuc uuauugugg| 2041 cau-ggugaa guccacucgg cauucauaau gucgucccca ugucagucga ugagugua-- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---|------ -uaaa--|AC 2221 |G||gccagc agccgcggua auuccagcuc caauagcgua u~~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS AY571893 DEFINITION Hildenbrandia rubra strain BC2 small subunit ribosomal RNA gene, group IE intron. ACCESSION AY571893 VERSION AY571893.1 GI:50299447 KEYWORDS . SOURCE Hildenbrandia rubra ORGANISM Hildenbrandia rubra Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 2 (bases 1 to 546) AUTHORS Muller,K.M., Ellenor,D.W., Sherwood,A.R., Sheath,R.G., Cannone,J.J. and Gutell,R.R. TITLE Direct Submission JOURNAL Submitted (10-MAR-2004) Biology, University of Waterloo, 200 University Ave West, Waterloo, ON N2L 3G1, Canada MEDLINE NONE FEATURES Location/Qualifiers source 1..546 /organism="Hildenbrandia rubra" /mol_type="genomic DNA" /strain="BC2" /db_xref="taxon:31481" rRNA join(<1..40,501..>546) /product="small subunit ribosomal RNA" intron 41..500 /note="group IE intron" ORIGIN 1 |~~~~~~~~~ ~~~~ugcggc uuaauuugac ucaacacggg aaaacuuacc aggu||u--( 61 aa--cugaca uuau------ ---------- -----gucug ---------- ---------- 121 ---------- ---------- --)------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- --------|- -g|Gccugg- |gau-|AGUg 661 gggauuagcg gug------- ---------- ---------( -auuug---- ---------- 721 ---------- ---------- ---------- ---------- ---------) -----ugccg 781 uugauuuaug c-cuGCU|A- |gug-u---c aaca---|(- -uuua-cuca ugu|agagg( 841 aagu-----) ccucau---- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- |--uuu-uc- 1021 gg|gcauugg g|-gccgcgg cauaaaau-( uuaaau--)a uuuuugcccg cggu-u)--- 1081 --uguuggcg c|-gA|CACC AGCU|GGU-| AC-AGGG|ga c-|g-c---- (--------u 1141 ac|gggcuuc ac-------- ---|(uca-- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ------)--- ----)----- 1261 ---------- --------g- uggg-g-u-c u|ac----|- ---------- --(-----)- 1321 ---------- -------gc| -caa|UC-CU GU|GGU-|GA -|gcuaga-- ----(guuaa 1381 acg------- ---------- )|-|------ |--------- ---------( ---------- 1441 ---------- ----)|---- ---------- -------|-| ---------u cu-agc|--| 1501 CAUC|-GCA| ACGCGCG|-c ca|AGCGG-U G|g|gcauuu uc-------( uca------- 1561 ---------- ---------- ---------- ---------- ---)------ -gaggaugcu 1621 |UAAGGGA|C GUGCU|a|au -|cc-|cugg ----(gcaau ----)----c cgag|---|c 1681 uaguuuuu-- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---- -gga---|gg g-------(c 1801 cggaaa---- -|-----ccc |-------aa |----agaac acuag|---- |agcc----- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---aca|cuu uu-------| --augcucaa ucg(gaaa)u gauugg-a-- 1981 agaa------ ---------- ---------- -----ggcu| -|ggu-aauu cuggauuua| 2041 aucuacgcca augcgaacac g-auuuuuaa a--------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---|------ -------|AU 2221 |G||ccggac auagugagga uugacagauu gagagcucuu ucuugauucu ~~~~~~~~~| 2281 |||| // LOCUS NN18SRRNI DEFINITION N.nigra 18S ribosomal RNA (intron 1). ACCESSION X91897 NID g4138278 VERSION NONE KEYWORDS 18S ribosomal RNA; 18S rRNA gene. SOURCE Nadsoniella nigra. ORGANISM Nadsoniella nigra Eukaryota; Fungi; Ascomycota; mitosporic Ascomycota; Nadsoniella. REFERENCE 2 (bases 1 to 430) AUTHORS Haase,G. TITLE Direct Submission JOURNAL Submitted (02-OCT-1995) G. Haase, Institute of Medical Microbiology, Klinikum RWTH, D- 52057 Aachen, FRG MEDLINE NONE FEATURES Location/Qualifiers source 1..430 /organism="Nadsoniella nigra" /strain="CBS 535.94" /db_xref="taxon:52866" rRNA 1..430 /gene="18S rRNA" /note="intron 1" gene 1..430 /gene="18S rRNA" BASE COUNT 95 a 115 c 128 g 92 t ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~ac ucaacacggg gaaacucacc gggU||u--( 61 aa--c-g--a ccuucg---- -gacaguuac gacaugucug ---------- ---------- 121 ---------- ---------- --)------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- --------|- -g|Gcccgg- |gac-|AGUg 661 ggaaaggg-- ---------- ---------- ---------( acgc------ ---------- 721 ---------- ---------- ---------- ---------- ---------) ---------- 781 ----ccuuuu c-cuGCU|A- |gua-ca--c aacc---|(- ---ga-ucca ugu|-gagg( 841 aagu-----) ccuccuu--- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- |----u-uc- 1021 gg|gcau-gg a|-gcagcgc ccc------( ccuuucuc)- ----gggggc cugu-a)--- 1081 --gguuggug c|-aA|CACC AGCU|GGU-| AC-AGGA|ga c-|g-cc--- (accucacaa 1141 uu-------- ---------- ---|------ ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ----)----- 1261 ---------- ---------- ---------- -|------|- ---------- --(-----)- 1321 ---------- ------ggc| -cga|UC-CU GU|GGU-|GA -|gucggga- ----(guaac 1381 g--------- ---------- )|-|------ |--------- ---------( ---------- 1441 ---------- ----)|---- ---------- -------|-| --------uc cu-ggc|--| 1501 CAUC|-GCA| ACGCGCG|-c aa|AGCGG-U G|g|guaggg ccccc----( uuaggauacu 1561 aau------- ---------- ---------- ---------- ---)----gg ggguccugcu 1621 |UAAGGUA|C GUGCU|a|au -|c--|ccau gg--(gaugg uaaa)---cc augg|---|c 1681 ucaaaguaug ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---- --gg---|ag gu------(c 1801 cgaau----- -|----acuu |-------aa |-----caac uuggg|---- |gcagcau-- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ----ac|cua ---------| (ucg------ ---------) |--------- 1981 -uag|----- ---------- ---------- --gugcugu| -|guacgcgg gaacuacac| 2041 cuaacgguuc ccccggcuua a--------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---|------ -------|AU 2221 |G||ccggac augcuuagga uugacagauu gauagcucuu uc~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS AF015912 DEFINITION Cryptendoxyla hypophloia 18S ribosomal RNA gene, partial sequence. ACCESSION AF015912 NID g2653819 VERSION NONE KEYWORDS . SOURCE Cryptendoxyla hypophloia. ORGANISM Cryptendoxyla hypophloia Eukaryotae; mitochondrial eukaryotes; Fungi; Ascomycota; Euascomycetes; Plectomycetes; Eurotiales; Pseudeurotiaceae; Cryptendoxyla. REFERENCE 2 (bases 1 to 644) AUTHORS Suh,S.-O. TITLE Direct Submission JOURNAL Submitted (23-JUL-1997) Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA MEDLINE NONE FEATURES Location/Qualifiers source 1..644 /organism="Cryptendoxyla hypophloia" /isolate="8574" /db_xref="taxon:64883" rRNA join(<1..86,520..>644) /product="18S ribosomal RNA" intron 87..519 /note="group I intron" BASE COUNT 153 a 145 c 195 g 151 t ORIGIN 1 |~~~~~~~~~ ~~~~~~~~gc uuaauuugac ucaacacggg gaaacucacc aggU||u--( 61 aa--c-u--a c-uacg---- -cgcaguaga ugcacgucug ---------- ---------- 121 ---------- ---------- --)------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- --------|- -g|Gccugg- |aaa-|AGUa 661 gg-------- ---------- ---------- ---------( cuuagu---- ---------- 721 ---------- ---------- ---------- ---------- ---------) ---------- 781 ---------- c-cuGCU|A- |gug-c---c gac----|(- -uuua-ccua cgu|ggagg( 841 aagcaauug) ccucc----- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- |--aac-uca 1021 gg|gcgu-ag g|-cgauggc uu-------( uaau----)- -----aagcc gucg-u)--- 1081 ---gucggug c|-gA|CACC AGCU|GGU-| AC-AGGG|ga c-|g-cc--- (--------u 1141 aa|ccg-ucu ---------- ---|(uauag ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ------)--- ----)----- 1261 ---------- ---------- -gga-c-c-g g|c-----|- ---------- --(-----)- 1321 ---------- ------ggc| ccga|UC-CU GU|GGC-|GA -|gcccga-- ----(guagc 1381 g--------- ---------- )|-|------ |--------- ---------( ---------- 1441 ---------- ----)|---- ---------- -------|-| ---------u cg-ggc|--| 1501 CGUC|-GCA| ACGCACG|-c ua|AGCGG-U G|g|gcucuc ---------( aaca------ 1561 ---------- ---------- ---------- ---------- ---)------ ---gagggcu 1621 |UAAGGUA|C GUGCU|a|au -|---|ccac gg--(gauaa ----)---cc gugg|---|c 1681 cgccuugacu ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---- ---a---|gu u-------(c 1801 cgaguuuacg a|-----agc |-------aa |---ggcggg ggugg|---- |acaggcg-- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ----cu|gca ag-------| (gcc------ ---------) |--------c 1981 uugu|c---- ---------- ---------- --ugcuugu| -|ggaacaau uuucuagua| 2041 aagu-cauau guuaugaagc uuuauuggag aguugaaaaa ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---|------ -------|AU 2221 |G||ccagac acaaguagga uugacagauu gag~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS AB031195 DEFINITION Cordyceps coccidiicola gene for 18S rRNA, partial sequence. ACCESSION AB031195 VERSION AB031195.1 GI:7619985 KEYWORDS 18S rRNA; 18S ribosomal RNA. SOURCE Cordyceps coccidiicola DNA. ORGANISM Cordyceps coccidiicola Eukaryota; Fungi; Ascomycota; Hypocreales; Clavicipitaceae; Cordyceps. REFERENCE 2 (bases 1 to 3039) AUTHORS Nikoh,N. and Fukatsu,T. TITLE Direct Submission JOURNAL Submitted (17-AUG-1999) to the DDBJ/EMBL/GenBank databases. Naruo Nikoh, NIBH, Insect-Parasitic Symbiotic Microorganisms Research Group; 1-1 Higashi, Tsukuba, Ibaraki 305-8566, Japan (E-mail:nikoh@nibh.go.jp, Tel:81-298-54-6087, Fax:81-298-54-6080) MEDLINE NONE FEATURES Location/Qualifiers source 1..3039 /organism="Cordyceps coccidiicola" /db_xref="taxon:102624" rRNA <1..>3039 /product="18S ribosomal RNA" BASE COUNT 649 a 848 c 993 g 549 t ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~uuugac ucaacacggg gaaacucacc aggU||u--( 61 ga-aggagg- ---acg---- -------aga --c-cgucug ---------- ---------- 121 ---------- ---------- --)------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- --------|- -g|Gccugg- |aac-|AGUg 661 gcggg----- ---------- ---------- ---------( cgccu(accc )aggcgcc-- 721 ---------- ---------- ---------- ---------- ---------) ---------- 781 ------cucg c-ccGCU|A- |gug-u---c gagc---|(- -cuca-uccg cgc|-gggg( 841 aagc-----) ccccgu---- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- |---ug-uc- 1021 gg|gcgc-gg a|gcggcgca ccc------( cucgccc-)- ----gggugc gccgug)--- 1081 --gcucgaug c|-gA|CACC AGCU|GGA-| AC-AGGG|ga c-|g-cc--- (--------c 1141 ac|ccgcgg- ---------- ---|(gaga- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ------)--- ----)----- 1261 ---------- ---------- --cc-g-c-g g|a-----|- ---------- --(-----)- 1321 ---------- ------ggc| -cga|CC-CU GU|GGC-|GA -|gcccag-- ----(guugc 1381 u--------- ---------- )|-|------ |--------- ---------( ---------- 1441 ---------- ----)|---- ---------- -------|-| -|-------c ug-ggc|--| 1501 CGUC|-GCA| ACGCGCG|-c aa|AGCGG-U G|g|gccgaa ucgccc---( gagg------ 1561 ---------- ---------- ---------- ---------- ---)----gg gcggucggcu 1621 |UAAGGUA|C GUGCU|G|AU -|c--|ccac gg--(gacga ----)---cc gugg|---|c 1681 uccccug--- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---- aaua---|gg c-------(c 1801 cgaca----c )|-----gcc |-----gaag |-----cagc gggag|---- |gcgggcggc 1861 acccc(cucg c)ggggggcc gcccggggaa gggcgccgcc gggg(accg) ucccgg|ggc 1921 gccca----- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------| -|-------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---|------ -------|GU 2221 |G||ccagac acaaugagga uugacagauu gagagcucuu u~~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS AB014043 DEFINITION Xylaria polymorpha gene for 18S rRNA, partial sequence. ACCESSION AB014043 NID g3299797 VERSION NONE KEYWORDS 18S rRNA; 18S ribosomal RNA. SOURCE Xylaria polymorpha (strain:IFO9780) DNA. ORGANISM Xylaria polymorpha Eukaryota; Fungi; Ascomycota; Euascomycetes; Pyrenomycetes; Xylariales; Xylariaceae; Xylaria. REFERENCE 2 (bases 1 to 3032) AUTHORS Kawasaki,H. and Miyado,S. TITLE Direct Submission JOURNAL Submitted (15-MAY-1998) to the DDBJ/EMBL/GenBank databases. Hiroko Kawasaki, Osaka University, International Center of Biotechnology; Yamada-oka 2-1, Suita, Osaka 565-0871, Japan (E-mail:kawasaki@icb.osaka-u.ac.jp, Tel:81-6-879-7455, Fax:81-6-879-7454) MEDLINE NONE FEATURES Location/Qualifiers source 1..3032 /organism="Xylaria polymorpha" /strain="IFO9780" /db_xref="taxon:77046" rRNA <1..>3032 /product="18S rRNA" BASE COUNT 799 a 610 c 791 g 824 t 8 others ORIGIN 1 |~~~~~~~gg agccugcggc uuaauuugac ucaacacggg gaaacucacc aggu||u--( 61 aa--cug--- ---------- -aacaguunc ----ugucug ---------- ---------- 121 ---------- ---------- --)------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- --------|- -g|Gccugg- |aaa-|AGUg 661 a--------- ---------- ---------- ---------( uuaauu---- ---------- 721 ---------- ---------- ---------- ---------- ---------) ---------- 781 ---------- --uuGCU|A- |gug-cu--a gaca---|(- -cucg-ucua cgc|-ggga( 841 aagc-----) ucccg----- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- |---au-uc- 1021 gg|gcgu-ag a|gcgguagc ---------( acu-----)- -------gcu aucg-a)--- 1081 -ugucuagug c|-gA|CACC AGCU|GGU-| AC-AGGG|ga c-|g-cc--- (--------u 1141 ca|uaccu-- ---------- ---|(uauu- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ------)--- ----)----- 1261 ---------- ---------- ---a-g-g-u a|c-----|- ---------- --(-----)- 1321 ---------- ------ggc| -cga|UC-CU GU|GGC-|GA -|gcucag-- ----(guugc 1381 g--------- ---------- )|-|------ |--------- ---------( ---------- 1441 ---------- ----)|---- ---------- -------|-| -|-------c ug-agc|--| 1501 CGUU|-GCA| ACGCGCG|-c aa|AGCGGAU G|g|gcuaua ua-------( unua------ 1561 ---------- ---------- ---------- ---------- ---)------ -uauauggcu 1621 |UAAGGUA|C GUGCU|a|au -|c--|cuau ga--(gaaa- ----)---uc guag|---|c 1681 cuccuug--- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---- aaua---|gg u-------(c 1801 cgaau----- )|-----auc |----caaag |------caa ggagg|---- |gcaaggcug 1861 gu-------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- -----c|ugu ---------| (uuauu---- ---------) |--------- 1981 -aca|u---- ---------- -------acu uagccuugc| -|guauuuaa ggggaagga| 2041 uauauauaua uacuaaaguu cuuauggcuu uauugucaua gguucuuagu auauacuuuc 2101 uccucucaaa ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---|------ -------|gu 2221 |G||ccagac acaaugagga uugacagauu gagagcucuu ucuugau~~~ ~~~~~~~~~| 2281 |||| // LOCUS BNIGNO25 DEFINITION Bensingtonia sakaguchii strain OK255. ACCESSION:AB0017 6 Sequence updated (27-Oct-1998). VERSION NONE KEYWORDS:18S ribosomal RNA; 18S rRNA. SOURCE BNIGNO25 ORGANISM Bensingtonia sakaguchii strain OK255. REFERENCE NONE AUTHORS NONE TITLE NONE JOURNAL NONE MEDLINE NONE FEATURES NONE ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~ggaaguuug aggcaauaac aggU||u--( 61 aa----ccua uau------- --caca---- ---------- ---------- ---------- 121 ---------- ---------- --)------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- --------|- -g|Gccugu- |aau-|AGCa 661 g--------- ---------- ---------- ---------( uugccucaga cuguuacaau 721 uuu------- ---------- ---------- ---------- ---------) ---------- 781 ---------- --cuGCU|A- |guc-ca--a ug-u---|(- -uuaa-ucuc ugu|uggag( 841 aagu-----) cuccuuuc-- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- |--cug-uc- 1021 gg|gcag-ag a|cgguug-- ---------( cuug----)- ---------c aacugu)--- 1081 ---acauggg c|-AA|CACA ACCU|GGU-| AC-AAGG|ga c-|g-ccu-- (--------- 1141 aa|cuc---- ---------- ---|(aaaa- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ------)--- ----)----- 1261 ---------- ---------- -------g-a g|a-----|- ---------- --(-----)- 1321 ---------- -----aggc| -cga|CC-AU GU|GGC-|GA -|gcuuga-- ----(guaac 1381 g--------- ---------- )|-|------ |--------- ---------( ---------- 1441 ---------- ----)|---- ---------- -------|-| ---------u ca-agc|--| 1501 CGUC|-GCA| ACGCGCG|ac aa|AGGUG-U G|g|gucaac uu-------( uuuau----- 1561 ---------- ---------- ---------- ---------- ---)------ -aaguuggcu 1621 |UAAGGUA|C GUGCU|-|ac u|cc-|caga g---(gauaa ----)----c ucug|---|c 1681 aacagugu-- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---- -caa---|gg g-------(c 1801 cgacaa---- )|-----acc |------aaa |-----acac uguug|---- |ggcaaaagu 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ------|--- ---------| (uaauc---- ---------) |--------- 1981 ---------- ---------- ---------- gcuuuugcu| -|gguuuuaa ---------| 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---|------ -------|au 2221 |G||cuguga ugcccuuaga uguuc~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS CRPRGEAC DEFINITION Cryphonectria parasitica 18S ribosomal RNA (18S rRNA) gene, group I intron. ACCESSION L42441 NID g832838 VERSION L42441.1 GI:832838 KEYWORDS 18S ribosomal RNA. SOURCE Cryphonectria parasitica (tissue library: ATCC #38755) DNA. ORGANISM Cryphonectria parasitica Eukaryota; Fungi; Ascomycota; Euascomycetes; Pyrenomycetes; Diaporthales; Valsaceae; Cryphonectria. REFERENCE 1 (sites) AUTHORS Chen,B., Chen,C.-H., Bowman,B.H. and Nuss,D.L. TITLE Phenotypic changes associated with hypovirus RNA transfection of plant pathogenic fungi phylogenetically related to Cryphonectria parasitica JOURNAL Unpublished (1995) COMMENT reference reports bases 1 to 1381 and 1929 to 2292. MEDLINE NONE FEATURES Location/Qualifiers source 1..2292 /organism="Cryphonectria parasitica" /db_xref="taxon:5116" /tissue_lib="ATCC #38755" misc_RNA 1382..1928 /note="group I intron" BASE COUNT 574 a 517 c 630 g 571 t ORIGIN 1 |~~cuuagag ggacuaucgg cucaagccga uggaaguuug aggcaauaac aggU||u--( 61 aa--c---au u--------- --caca---- ---------- ---------- ---------- 121 ---------- ---------- --)------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- --------|- -g|Gccugu- |aaa-|AGUa 661 g--------- ---------- ---------- ---------( accucauuaa auauua---- 721 ---------- ---------- ---------- ---------- ---------) ---------- 781 ---------- --cuGCU|A- |guc-ga--u gcauc--|(- ---gu-ucuc cgc|-gggg( 841 aagc-----) ccccau---- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- |--uua-uc- 1021 gg|gcgg-ag a|-uaugcug aagcaucug( auua----)- cagugcucag ugua-a)--- 1081 --gaugccgg c|-GA|CACC ACCU|GGU-| AC-AGGG|ga c-|g-ccu-- (--------- 1141 cg|cgguu-- ---------- ---|(ucca- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ------)--- ----)----- 1261 ---------- ---------- ---a-a-c-c g|a-----|- ---------- --(-----)- 1321 ---------- -----aggc| -caa|UC-CU GU|GGC-|GA -|gcucgg-- ----(gucgc 1381 g--------- ---------- )|-|------ |--------- ---------( ---------- 1441 ---------- ----)|---- ---------- -------|-| ---------c ug-agc|--| 1501 CGUC|-GCA| ACGCGCG|-c ua|AGGGG-U G|g|gcuagu cc-------( ugcg------ 1561 ---------- ---------- ---------- ---------- ---)------ -gggcuggcu 1621 |UAAGGUA|C GUGCU|-|aa u|cc-|accg c---(gaaaa ----)----g cggu|---|c 1681 ucguguga-- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---- -gaa---|ga c-------(c 1801 cgauaa---- )|-----guc |------gag |-----ucac acggg|---- |ggcuuc--- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ------|uga cag------| (ugau----- ---------) |-------uu 1981 gucg|u---- ---------- ---------- ---ggggcu| -|gguacagu ggggaaugu| 2041 cagcauacag ggggaacagu cauggaaguc gugguuaccc uagaacaugc uuuagugacc 2101 cuagcgcaug gucuaguagc ccuagacugg agagucguag uuacucuaga agacuuuuug 2161 uugacuguuc uuguuccuuc uugcuugaca uaacccacuc aac|------ -------|au 2221 |G||cuguga ugcccuuaga uguucugggc cgcacgcgcg cuacac~~~~ ~~~~~~~~~| 2281 |||| // LOCUS AB027322 DEFINITION Cordyceps inegoensis DNA for 18S ribosomal RNA. ACCESSION AB027322 VERSION AB027322.1 GI:7619920 KEYWORDS . SOURCE Cordyceps inegoensis DNA. ORGANISM Cordyceps inegoensis Eukaryota; Fungi; Ascomycota; Hypocreales; Clavicipitaceae; Cordyceps. REFERENCE 2 (bases 1 to 2958) AUTHORS Nikoh,N. TITLE Direct Submission JOURNAL Submitted (17-MAY-1999) to the DDBJ/EMBL/GenBank databases. Naruo Nikoh, NIBH, Insect-Parasitic Symbiotic Microorganisms Research Group; 1-1 Higashi, Tsukuba, Ibaraki 305-8566, Japan (E-mail:nikoh@nibh.go.jp, Tel:81-298-54-6087, Fax:81-298-54-6080) MEDLINE NONE FEATURES Location/Qualifiers source 1..2958 /organism="Cordyceps inegoensis" /db_xref="taxon:94207" rRNA 1..2958 /product="18S ribosomal RNA" BASE COUNT 688 a 750 c 906 g 614 t ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~ggaaguuug aggcaauaac aggU||u--( 61 ga--cc--au u--------- ---aca---- ---------- ---------- ---------- 121 ---------- ---------- --)------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- --------|- -g|Gccugu- |aac-|AGUg 661 g--------- ---------- ---------- ---------( gccucacuaa agauua---- 721 ---------- ---------- ---------- ---------- ---------) ---------- 781 ---------- --ccGCU|A- |guc-ca--g cgac---|(- -uuua-ccuc cgc|-gggg( 841 aagc-----) cccca----- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- |--uua-uc- 1021 gg|gcgg-ag g|-gggcccu ---------( gaagaa--)- -------agg gccc-u)--- 1081 --gucgcggg c|-GA|CACC ACCU|GGA-| AC-AGGG|aa c-|g-cc--- (-------ug 1141 aa|cccuu-- ---------- ---|(gguu- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ----)----- 1261 ---------- ---------- ---g-g-g-g g|ac----|- ---------- --(-----)- 1321 ---------- ------ggc| -cga|UC-CU GU|GGC-|GA -|gccugg-- ----(guugc 1381 g--------- ---------- )|-|------ |--------- ---------( ---------- 1441 ---------- ----)|---- ---------- -------|-| ---------c ca-ggc|--| 1501 CGUU|-GCA| ACGCGCG|-c aa|AGGGG-U G|g|gccuuc ---------( acc------- 1561 ---------- ---------- ---------- ---------- ---)------ ---gaaggcu 1621 |UAAGGUA|C GUGCU|-|aa u|cc-|cgug g---(gcaa- ----)----c cacg|---|c 1681 cucugcg--- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---- acua---|gg c-------(c 1801 cgauaa---- )|-----gcc |-----gaag |------ugc agggg|---- |agccacggg 1861 cgc------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- (ugcg----- ---------) ---------- 1981 ---------- ---------- -------gcg cccggggcu| -|ggggccuc cgcgg-(cgc 2041 uc)ucgcggg ggccau---- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---|------ -------|cu 2221 |G||cuguga ugcccuuaga uguucugggc cg~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS AB079125 DEFINITION Beauveria bassiana genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 26S rRNA, partial and complete sequences. ACCESSION AB079125 VERSION AB079125.1 GI:18461162 KEYWORDS . SOURCE Beauveria bassiana (strain:IFO 8554) DNA. ORGANISM Beauveria bassiana Eukaryota; Fungi; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreales; Clavicipitaceae; Cordyceps. REFERENCE 2 (bases 1 to 3053) AUTHORS Yokoyama,E. and Hara,A. TITLE Direct Submission JOURNAL Submitted (30-JAN-2002) Eiji Yokoyama, Meijo University, The Agricultural High-Tech Research Center; Tempaku-ku, Nagoya, Aichi 468-8502, Japan (E-mail:yokoyama@ccmfs.meijo-u.ac.jp, Tel:81-52-832-1151(ex.3671)) MEDLINE NONE FEATURES Location/Qualifiers source 1..3053 /organism="Beauveria bassiana" /strain="IFO 8554" /db_xref="taxon:5582" rRNA <1..2515 /product="18S ribosomal RNA" misc_RNA 2516..2676 /note="ITS1" rRNA 2677..2834 /product="5.8S ribosomal RNA" misc_RNA 2835..2995 /note="ITS2" rRNA 2996..>3053 /product="26S ribosomal RNA" BASE COUNT 755 a 765 c 839 g 694 t ORIGIN 1 |~~~~~~~~~ ~gacuaucgg cucaagccga uggaaguuug aggcaauaac aggU||u--( 61 ga--c-c-ua ---------- --caca---- ---------- ---------- ---------- 121 ---------- ---------- --)------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- --------|- -g|Gccugu- |cac-|AGUg 661 g--------- ---------- ---------- ---------( uccucacuaa aauau----- 721 ---------- ---------- ---------- ---------- ---------) ---------- 781 ---------- --ccGCU|A- |guc-ga--g cgca---|(- -uuua-ccuc ugu|uggga( 841 aagc-----) ucccuu---- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- |--uua-cu- 1021 gg|gcag-ag g|-agacggc ---------( cgcc----)- -------gcc gucuu-)--- 1081 --ugcgucgg c|-GA|CACU ACCU|GGU-| AC-AGGG|ga c-|g-ccu-- (-------ga 1141 aa|------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ----)----- 1261 ---------- ---------- ---------- -|------|- ---------- --(-----)- 1321 ---------- -----gggc| -cga|UC-CU GU|GGC-|GA -|gcucgg-- ----(gucgc 1381 g--------- ---------- )|-|------ |--------- ---------( ---------- 1441 ---------- ----)|---- ---------- -------|-| ---------c cg-agc|--| 1501 CGUC|-GCA| ACGCACG|-c ua|AGGAG-U G|g|gcuag- ---------( gaaa------ 1561 ---------- ---------- ---------- ---------- ---)------ ----cuagcu 1621 |UAAGGUA|C GUGCU|-|aa u|cc-|cacg g---(gcaa- ----)----c cgug|---|c 1681 ucgaucg--- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---- aaua---|gg c-------(c 1801 caguaa---- )|-----gcc |-----gaag |------cga ucggg|---- |gcucuuggg 1861 uaguuccgga gcggcuugcu guccccuggg gaagaacgac gccccgcguc uguucgaacc 1921 gggaggcgac aaga------ ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------| -|-------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- -------|au 2221 |G||cuguga ugcccuuaga uguucugggc cgcacgcgcg ~~~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS AB012952 DEFINITION Nectria ochroleuca gene for 18S rRNA, partial sequence. ACCESSION AB012952 NID g3721660 VERSION NONE KEYWORDS 18S ribosomal RNA; 18S rRNA. SOURCE Nectria ochroleuca (strain:IAM 14570) DNA. ORGANISM Nectria ochroleuca Eukaryota; Fungi; Ascomycota; Euascomycetes; Pyrenomycetes; Hypocreales; Hypocreaceae; Nectria. REFERENCE 2 (bases 1 to 2472) AUTHORS Ogawa,H. and Sugiyama,J. TITLE Direct Submission JOURNAL Submitted (14-APR-1998) to the DDBJ/EMBL/GenBank databases. Hiroyuki Ogawa, National Institute of Genetics, Center for Information Biology; Yata 1111, Mishima, Shizuoka 411-8540, Japan (E-mail:KFR00124@nifty.ne.jp, Tel:81-559-81-6895, Fax:81-559-81-6896) MEDLINE NONE FEATURES Location/Qualifiers source 1..2472 /organism="Nectria ochroleuca" /strain="IAM 14570" /db_xref="taxon:29856" exon <1..1127 rRNA join(<1..1127,1491..1751,2127..>2472) /product="18S rRNA" intron 1128..1490 /function="Group I intron" exon 1491..1751 intron 1752..2126 /function="Group I intron" exon 2127..>2472 BASE COUNT 642 a 571 c 678 g 581 t ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~ga uggaaguuug aggcaauaac aggU||u--( 61 aa--ccu-au u--------- --caca---- ---------- ---------- ---------- 121 ---------- ---------- --)------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- --------|- -g|Gccugu- |aac-|AGUa 661 ga-------- ---------- ---------- ---------( ccucuugaaa uau------- 721 ---------- ---------- ---------- ---------- ---------) ---------- 781 ---------- u-cuGCU|A- |guc-ca--a cga----|(- -cuca-ccuc cgu|agggg( 841 aagc-----) ccccua---- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- |--aug-uc- 1021 gg|gcgg-ag g|-aggccuc ---------( ugua----)- -------gag gucuaa)--- 1081 ---ucguggg c|-gA|CACU ACCU|GGU-| AC-AGGG|ga c-|g-ccu-- (--------- 1141 au|cccgagu ---------- ---|(uaac- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ------)--- ----)----- 1261 ---------- ---------- -gcu-c-g-g g|------|- ---------- --(-----)- 1321 ---------- -----aggc| -caa|UC-CU GU|GGC-|GA -|gucugg-- ----(guugc 1381 g--------- ---------- )|-|------ |--------- ---------( ---------- 1441 ---------- ----)|---- ---------- -------|-| ---------c ca-gac|--| 1501 CGUC|-GCA| ACGCGCG|-g aa|AGGAG-U G|g|gcuc-- ---------( uucg------ 1561 ---------- ---------- ---------- ---------- ---)------ -----gagcu 1621 |UAAGGUA|C GUGCU|-|aa u|cc-|caug g---(ggaa- ----)----c caug|---|c 1681 cacuaug--- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---- acua---|gg c-------(c 1801 cgacaa---- -|-----gcc |-----gaag |------cau agagg|---- |ggc------ 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- -----a|ggc gc-------| (ugga----- ---------) |--------g 1981 cgcc|c---- ---------- ---------- ------gcu| -|ggaa-cuc acugucgcg| 2041 guccgccgcg gc-gugggaa ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---|------ -------|au 2221 |G||cuguga ugcccuuaga uguu~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS AF150489 DEFINITION Fusarium solani f. robiniae strain SUF577 small subunit ribosomal RNA gene, partial sequence. ACCESSION AF150489 VERSION AF150489.1 GI:7648661 KEYWORDS . SOURCE Fusarium solani f. robiniae. ORGANISM Fusarium solani f. robiniae Eukaryota; Fungi; Ascomycota; anamorphic Ascomycota; Fusarium. REFERENCE 2 (bases 1 to 1051) AUTHORS Suga,H., Hyakumachi,M. and Kageyama,K. TITLE Direct Submission JOURNAL Submitted (12-MAY-1999) Molecular Genetics Research Center, Gifu University, Gifu 501-1112, Japan MEDLINE NONE FEATURES Location/Qualifiers source 1..1051 /organism="Fusarium solani f. robiniae" /strain="SUF577" /db_xref="taxon:121877" /note="forma: robiniae" rRNA join(<1..276,712..>1051) /product="small subunit ribosomal RNA" misc_RNA 277..711 /note="intron-like sequence" BASE COUNT 225 a 282 c 322 g 222 t ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~ga uggaaguuug aggcaauaac aggU||u--( 61 aa--c---a- ---------- --caca---- ---------- ---------- ---------- 121 ---------- ---------- --)------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- --------|- -g|Gccugu- |aac-|AGUg 661 g--------- ---------- ---------- ---------( gccucuauaa aaaagau--- 721 aa-------- ---------- ---------- ---------- ---------) ---------- 781 ---------- --ccGCU|A- |guc-ca--g cac----|(- -uuua-ccuc cgu|agggg( 841 aagc-----) ccccaa---- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- |--cua-uc- 1021 gg|gcgg-ag g|aggca--- ---------( cucaga--)- ---------- ugccgu)--- 1081 ---gugcggg c|-aA|CACC ACCU|GGA-| AC-AGGG|aa c-|g-cc--- (-------ua 1141 cg|------- ---------- ---|(----- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ------)--- ----)----- 1261 ---------- ---------- ---------- -|------|- ---------- --(-----)- 1321 ---------- ------ggc| -cga|UC-CU GU|GGC-|GA -|gccugg-- ----(guagc 1381 u--------- ---------- )|-|------ |--------- ---------( ---------- 1441 ---------- ----)|---- ---------- -------|-| ---------c ca-ggc|--| 1501 CGUC|-GCA| ACGCGCG|-c ua|AGGGG-U G|g|gcuggu cucc-----( cuuc------ 1561 ---------- ---------- ---------- ---------- ---)-----g ggggccggcu 1621 |UAAGGUA|C GUGCU|-|aa u|cc-|cacg g---(gaaa- ----)----c cgug|---|c 1681 ucccucau-- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---- -gga---|gg c-------(c 1801 cgauag---- -|-----gcc |------aaa |-----gugu uggag|---- |ggu-gccgc 1861 ugggagcu(u cag)ggcucu cggcugcgcu ggugcuucgc ugcagcgucc gcugcagggc 1921 gggacaaccc ccu---cggg ggacguggac cgccc-gcgg acgcugagcc acggcgag-- 1981 ---------- ---------- ---------- ---------| -|-------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------g cuuaa--|uu 2221 |G||cuguga ugcccuuaga uguucugggc cgc~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS AF258604 DEFINITION Scytalidium dimidiatum strain IP252799 18S ribosomal RNA gene, partial sequence. ACCESSION AF258604 VERSION AF258604.1 GI:9280424 KEYWORDS . SOURCE Scytalidium dimidiatum. ORGANISM Scytalidium dimidiatum Eukaryota; Fungi; Ascomycota; anamorphic Ascomycota; Scytalidium. REFERENCE 2 (bases 1 to 2142) AUTHORS Machouart,M., Lorenzo,F., Lacroix,C., Giudicelli,C., Le Gall,I. and Derouin,F. TITLE Direct Submission JOURNAL Submitted (20-APR-2000) Parasitology-Mycology Laboratory, UFR Lariboisiere Saint Louis Universite Paris 7; Centre d'Etude du Polymorphisme Humain (CEPH), 15 rue de l'ecole de medecine, Paris 75006, France MEDLINE NONE FEATURES Location/Qualifiers source 1..2142 /organism="Scytalidium dimidiatum" /strain="IP252799" /db_xref="taxon:108428" /note="isolated from human skin" rRNA join(<1..1399,1794..>2142) /note="numbering of variable regions are according to the Saccharomyces cerevisiae sequence in GenBank Accession Number Z75578 and to J. Med. Microbiol. 1998; 47:811-820 and Mycoses 1996; 39:25-30" /product="18S ribosomal RNA" misc_feature 37..77 /note="Region: variable region V1" misc_feature 103..260 /note="Region: variable region V2" misc_feature 436..507 /note="Region: variable region V3" misc_feature 589..820 /note="Region: variable region V4" misc_feature 1007..1050 /note="Region: variable region V5" misc_feature 1314..1371 /note="Region: variable region V7" intron 1400..1793 /note="putative group I intron" misc_feature 1836..1917 /note="Region: variable region V8" misc_feature 2036..2106 /note="Region: variable region V9" BASE COUNT 514 a 496 c 612 g 520 t ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~cga uggaaguuug aggcaauaac aggU||u--( 61 ga--cgaca- ---------- --aaca---- ---------- ---------- ---------- 121 ---------- ---------- --)------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- --------|- -g|Gccugu- |gac-|AGCg 661 gg-------- ---------- ---------- ---------( gcuucgaacu uuccguguuu 721 uuuuuuuu-c u--------- ---------- ---------- ---------) ---------- 781 ---------- u-ccGCU|A- |guc-gau-c aucc---|(- ---gu-gacg gcc|-gggc( 841 aagc-----) gcccga---- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- |--gua-cc- 1021 ag|gacc-gu c|-gggcccc c--------( gagaag-g)- ------gggg gccu-a)--- 1081 --ggaugcgg c|-aA|GACG ACCC|GGU-| UC-GGGG|aa c-|g-ccagc (gugc----- 1141 ---------- ---------- ---------- ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ----)----- 1261 ---------- ---------- ---------- --------|- ---------- --(-----)- 1321 ---------- ---gcuggc| -cga|UC-CC GA|GGC-|GA -|ggugcc-- ----(guagc 1381 g--------- ---------- )|-|------ |--------- ---------( ---------- 1441 ---------- ----)|---- ---------- -------|-| ---------g gc-acc|--| 1501 CGUC|-GUA| ACGCGCG|-g ua|GGGCG-U C|g|gucccc ccucc----( cacggc---- 1561 ---------- ---------- ---------- ---------- ---)----gg aggggaggcu 1621 |UAAGGUA|C GUGCU|-|aa a|c--|cccc a---(gcga- ----)----u gggg|---|c 1681 cuguagg--- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---- aaaa---|gc c-------(c 1801 ugguac---- -|-----ggc |-----gaag |------ccu acggg|---- |gaccgcc-- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- (cgau----- ---------) ---------- 1981 ---------- ---------- ---------- --ggcgguc| g|gaugccgg (cgggccacg 2041 gagccc)ccg gcgucg---- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ----a--|uu 2221 |G||cuguua ugcccuuaga uguucugggc cg~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS CA25SRRN DEFINITION C.albicans gene for 25S rRNA. ACCESSION X74272 NID g433077 VERSION X74272.1 GI:433077 KEYWORDS 25S ribosomal RNA; ribosomal RNA; self-splicing intron. SOURCE Candida albicans. ORGANISM Candida albicans Eukaryota; Fungi; Ascomycota; Hemiascomycetes; Saccharomycetales; Candidaceae; Candida. REFERENCE 2 (bases 41 to 419) AUTHORS Mercure,S., Montplaisir,S. and Lemay,G. TITLE Correlation between the presence of a self-splicing intron in the 25S rDNA of C.albicans and strains susceptibility to 5-fluorocytosine JOURNAL Nucleic Acids Res. 21 (25), 6020-6027 (1993) MEDLINE 94119705 FEATURES Location/Qualifiers source 1..459 /organism="Candida albicans" /isolate="patient 4-1" /db_xref="taxon:5476" /clone="pBS4b2" rRNA join(<1..40,420..459) /product="25S ribosomal RNA" exon <1..40 /number=1 intron 41..419 /note="group 1" /number=1 exon 420..459 /number=2 BASE COUNT 110 a 104 c 152 g 93 t ORIGIN 1 |~~~~~~~~~ ~~~~caacca agcgcgggua aacggcggga guaacuauga cucU||c--( 61 aaccuauaa- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- --)------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- --------|- -g|Ggaggca |aa--|AGUa 661 gggacgccau gguuucc-a- ---------- ---------( gaaa------ ---------- 721 ---------- ---------- ---------- ---------- ---------) -ugggccgcg 781 guguuuuuga c-cuGCU|A- |guc-ga--u cuggcca|(g -acgu-a--- ---|------ 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- |u-cug-ug- 1021 gg|------- ---------- ---------- ---------- ---------- ------)--- 1081 uggccagcgg c|-ga|CAUA ACCU|GGU-| AC-GGGG|aa --|g-gccuc (----gaagc 1141 ag|uguu--c accuugggag ugc|(gcaa- ---------- ---)------ ---------- 1201 ---------- ---------- ---------- ---------- ---------- ----)----- 1261 ---------- gcacaaaga- ggug-a-g-u g|guguau|- ---------- --(-----)- 1321 ---------- ---gggguu| --aa|UC-CC GU|GGC-|GA -|gccgucag ggc-(gcga- 1381 ---------- ---------- )|-|------ |--------- ---------( ---------- 1441 ---------- ----)|---- ---------- -------|-| -guucuggca gu-ggc|--| 1501 CGUC|-GUA| GAGCACG|-G AA|AGGUA-U G|g|gcuggc uc-------( ucu------- 1561 ---------- ---------- ---------- ---------- ---)------ -gagucggcu 1621 |UAAGGUA|C GUGCC|-|GU -|cc-|caca c---(gauga aaa-)----g ugug|---|c 1681 ggugcag--- ------(--- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---- aaua---|gu u-------(c 1801 ccacag---- )|-----aac |-----gaag |------cug cgccg|---- |gagaaa--- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ------|--- ---------- |(gcga---- ---------) |--------- 1981 ---|------ ---------- ---------- ---uuucuu| -|ggagca-- ---------| 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---|------ -------|AU 2221 |G||cuuaag guagccaaau gccucgucau cuaauuagug acgc~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS AF405231 DEFINITION Candida dubliniensis 26S ribosomal RNA gene, partial sequence. ACCESSION AF405231 VERSION AF405231.2 GI:17505185 KEYWORDS . SOURCE Candida dubliniensis. ORGANISM Candida dubliniensis Eukaryota; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; mitosporic Saccharomycetales; Candida. REFERENCE 3 (bases 1 to 4621) AUTHORS Kim,D., Shin,W.S., Kim,K. and Koh,C.-M. TITLE Direct Submission JOURNAL Submitted (11-DEC-2001) Microbiology, Yonsei Univ. Wonju College of Medicine, Ilsan-Dong, Wonju 220-701, S. Korea REMARK Sequence update by submitter COMMENT On Dec 11, 2001 this sequence version replaced gi:15341512. MEDLINE NONE FEATURES Location/Qualifiers source 1..4621 /organism="Candida dubliniensis" /db_xref="taxon:42374" rRNA <1..206 /product="18S ribosomal RNA" misc_RNA 207..244 /product="internal transcribed spacer 1" rRNA 245..502 /product="5.8S ribosomal RNA" misc_RNA 503..658 /product="internal transcribed spacer 2" rRNA join(659..2902,3526..>4621) /note="putative" /product="28S ribosomal RNA" BASE COUNT 1228 a 908 c 1260 g 1225 t ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~gggua aacggcggga guaacuauga cucU||c--( 61 aaccuauaa- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- --)------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- --------|- -g|Ggaggca |aa--|AGUa 661 gggacgcuau gguuucc-ca ---------- ---------( gaaa------ ---------- 721 ---------- ---------- ---------- ---------- ---------) uggggccgag 781 guguuuuuga c-cuGCU|A- |guc-ga--u cugguua|(a -uuag-guau uuu|guaua- 841 uuac------ uuauca-gag uauucuccug guauuauaca uuuuacuuua ugacgacaac 901 uauuacccgc gggacaacca uuucuugauu uauuuacugc aagugauucu agaauauggu 961 gauuccaguu auaacaccaa cuguuaugac acaaguguga uacagucaua |agcug-ug- 1021 gg|------- ---------- ---------- ---------- ---------- ------)--- 1081 uaaccagcgg c|-ga|CAUA ACCU|GGU-| AC-GGGG|aa --|g-gccuc (----gaagc 1141 ag|uaua--u auuuu----- ---|(gggau ugaaaaucgg guugcaaaa- cuuuuguuuu 1201 -u-gga-aac ac--gguu-g g-u-ga-gga aa-----aa- a----aaaau auuuuu-ucc 1261 ccgcacuuga ------agac aaua-u-a-u g|uuguau|- ---------- --(-----)- 1321 ---------- ---gggguu| --aa|UC-CC GU|GGC-|GA -|gccgucag agc-(gcga- 1381 ---------- ---------- )|-|------ |--------- ---------( ---------- 1441 ---------- ----)|---- ---------- -------|-| -guucuggca gu-ggc|--| 1501 CGUC|-GUA| GAGCACG|-G AA|AGGUA-U G|g|gcuggc uc-------( ucu------- 1561 ---------- ---------- ---------- ---------- ---)------ -gagucggcu 1621 |UAAGGUA|C GUGCC|-|GU -|cc-|caca c---(gauga aaa-)----g ugug|---|c 1681 ggugcag--- ------(--- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---- aaua---|gu u-------(c 1801 ccacag---- )|-----aac |-----gaag |------cug cgccg|---- |gagaaa--- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ------|--- ---------- |(gcga---- ---------) |--------- 1981 ---|------ ---------- ---------- ---uuucuu| -|ggagca-- ---------| 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---|------ -------|AU 2221 |G||cuuaag guagccaaau gccucgucau cuaauuag~~ ~~~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS RELSRRNA DEFINITION R.elatiana complete gene of large subunit rRNA. ACCESSION X78521 NID g643022 VERSION X78521.1 GI:643022 KEYWORDS large subunit ribosomal RNA. SOURCE Rotaliella elatiana. ORGANISM Rotaliella elatiana Eukaryota; Granuloreticulosea; Foraminifera; Rotaliina; Rotaliidae; Rotaliella. REFERENCE 3 (bases 1 to 4731) AUTHORS Pawlowski,J., Bolivar,I., Fahrni,J. and Zaninetti,L. TITLE Taxonomic identification of foraminifera using ribosomal DNA sequences JOURNAL Micropaleontology 40, 373-377 (1994) COMMENT On Feb 5, 1995 this sequence version replaced gi:468812. MEDLINE NONE FEATURES Location/Qualifiers source 1..4731 /organism="Rotaliella elatiana" /strain="Elat'87" /db_xref="taxon:35210" /clone="ROTE (2TA-0), ROTE (10-31)" rRNA 1..4731 /gene="large subunit rRNA" /product="LSU rRNA" gene 1..4731 /gene="large subunit rRNA" misc_feature 3110..3639 /gene="large subunit rRNA" /note="internally transcribed spacer" BASE COUNT 1338 a 856 c 931 g 1605 t 1 others ORIGIN 1 |uggcuucag cauuuuaagc gcgggucaac ggcgggagua acuaugacuc ucuU||aa-( 61 accuauaugg uuuaauuaua uauacuuuuu uuuuaaaaaa uuguauauau auaaaacucu 121 cauuuggcau auuauuauua cc-------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- --------|- uu|Gagaga- |aau-|AGAc 661 caa------- ---------- ---------- ---------( cauguauuua aaaccuauuu 721 ucuuuucaau uuaaauacuu guuac----- ---------- ---------) ---------- 781 ---------u u-ggUCU|A- |gug-gc--a acgca--|(- -auuu-uaa- ---|------ 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- |--uua-ca- 1021 gg|------- ---------- ---------- ---------- ---------- --au-g)--- 1081 -ugcguucug c|-ga|GACA AGCU|GGU-| UA-GAGG|aa --|g-gu--- (--------- 1141 -u|cuauugu g--------- ---|(uuuaa ---------- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ----)----- 1261 ---------- ---------- uaca-u-a-a g|------|- ---------- --(-----)- 1321 ---------- ------acu| --aa|cc-uc ua|gaug|AA -|acuucuca ----(auuuu 1381 uuauuaauuu aaaaaaaaaa )|-|------ |--------- ---------( ---------- 1441 ---------- ----)|---- ---------- -------|-| ----ugauu- ---agu|--| 1501 UCAU|-GUA| GAGCUCG|-C CA|AGCUG-U C|g|guuaug g--------( guuagauuga 1561 uuuuuuuuuc uuucuuuugg aauaaaaaaa agaggauauu uua)------ --ucauagcu 1621 |UAAGGAA|C GGGCC|-|uu u|auu|caua c---(gaaa- ----)----g uaug|---|u 1681 guuauau--- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---- -uua---|ca ag------(c 1801 cuguaa---- )|----cuug |------aag |------aua uaaca|---- |gggu----- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ----uu|cua ---------- |(uuuauu-- ---------) |--------- 1981 uag|uu---- ---------- ---------- -----acuc| -|aau-aaua agcauaauu| 2041 cuuuuua-gc uu-uu----- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- auguagcuga uau|------ -------aaa 2221 |G||aaggua gccaaaugcc ucgucauuua auuggugacg cgcaugaaug gaucaacga| 2281 |||| // LOCUS SP11512 DEFINITION Skeletonema pseudocostatum 28S rRNA gene, ITS2, group I intron. ACCESSION Y11512 NID g3367774 VERSION Y11512.1 GI:3367774 KEYWORDS 28S ribosomal RNA; 28S rRNA gene; group I intron; internal transcribed spacer 2; ITS2. SOURCE Skeletonema pseudocostatum. ORGANISM Skeletonema pseudocostatum Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Skeletonemataceae; Skeletonema. REFERENCE 2 (bases 1 to 3878) AUTHORS Van der Auwera,G. and De Wachter,R. TITLE Structure of the large subunit rDNA from a diatom, and comparison between small and large subunit ribosomal RNA for studying stramenopile evolution JOURNAL J. Eukaryot. Microbiol. 45, 515-521 (1998) COMMENT Related sequence Y11511. MEDLINE NONE FEATURES Location/Qualifiers source 1..3878 /organism="Skeletonema pseudocostatum" /db_xref="taxon:41457" misc_feature <1..142 /note="ITS2, internal transcribed spacer 2" /evidence=experimental rRNA 143..2397 /gene="28S rRNA" /evidence=experimental /product="28S ribosomal rRNA" gene 143..3878 /gene="28S rRNA" intron 2398..2812 /gene="28S rRNA" /note="group I intron" /evidence=experimental rRNA 2815..>3878 /gene="28S rRNA" /evidence=experimental /product="28S ribosomal RNA" BASE COUNT 1043 a 782 c 1064 g 989 t ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~gcgggagua acuaugacuc ucuU||aa-( 61 aacucgaguu aguuuucauu gcuacu---- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- --------|- uu|Gagaga- |gau-|AGGa 661 ggg------- ---------- ---------- ---------( caaggucugu agccagaucu 721 uguuau---- ---------- ---------- ---------- ---------) ---------- 781 ---------g c-cuUCU|A- |guc-ga--g gugcc--|(c -acua-ag-- ---|------ 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- |--uug-ug- 1021 gg-------- ---------- ---------- ---------- ---------- -----u)--- 1081 -ggcacccgg c|-aa|GAUA ACCU|GGU-| AC-GGGG|aa --|g-gc--- (--------u 1141 ua|ccugaga aggaacgggc acc|(gcuua uagcaa---- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ----)----- 1261 ---------- ggugccugc- ucug-g-a-g g|gu----|- ---------- --(-----)- 1321 ---------- ------gcu| --aa|uc-uc gu|GGC-|GA -|gccgauca aga-(guga- 1381 ---------- ---------- )|-|------ |--------- ---------( ---------- 1441 ---------- ----)|---- ---------- -------|-| -ucuugguca au-ggc|--| 1501 CGUC|-GUA| UCGCGCG|-G AA|AGGUA-U C|g|augggc ucgg-----( uccg------ 1561 ---------- ---------- ---------- ---------- ---)-----c cgagucuguu 1621 |UAAGGGA|C GUGCA|-|ag u|cc-|gaug c---(gaaa- ----)----g cauc|---|a 1681 guguuac--- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---- ugga---|gc a-------(c 1801 ccacaa---- )|-----ugc |-----aaag |------gua ucacu|---- |agcc----- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ------guac auauua|cga gagcucug-- |(aggaaaug ---------) |-cugag--c 1981 ucg|-a---- ---------- ---------- -----ggcu| -|ggu----- ---------| 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------a uua|------ -------aau 2221 |G||aaggua gccaaaugcc ucgucaucua auua~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS AF197121 DEFINITION Metarhizium anisopliae var. anisopliae strain 11 28S ribosomal RNA gene, group-IB intron. ACCESSION AF197121 VERSION AF197121.1 GI:9081972 KEYWORDS . SOURCE Metarhizium anisopliae var. anisopliae. ORGANISM Metarhizium anisopliae var. anisopliae Eukaryota; Fungi; Ascomycota; anamorphic Ascomycota; Metarhizium. REFERENCE 2 (bases 1 to 337) AUTHORS Mavridou,A. and Typas,M.A. TITLE Direct Submission JOURNAL Submitted (21-OCT-1999) Genetics & Biotechnology, Faculty of Biology, University of Athens, Panepistemiopolis, Athens 15701, Greece MEDLINE NONE FEATURES Location/Qualifiers source 1..337 /organism="Metarhizium anisopliae var. anisopliae" /strain="11" /variety="anisopliae" /db_xref="taxon:92636" intron <1..>337 /note="group-IB intron in 28S ribosomal RNA gene complex" BASE COUNT 63 a 92 c 128 g 54 t ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ gaaucagcgg ggaaagaaga cccU||g--( 61 aacaagca-- --ucaa---- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -c|Gggguc- |aau-|AGCg 661 gu-------- ---------- ---------- ---------( ca-------- ---------- 721 ---cgu---- ---------- ---------- ---------- ---------) ---------- 781 ---------- g-ccGCU|A- |guc-ca--g cagccg-|(a -ucag----- ---|------ 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- |--uug-ug- 1021 gg|------- ---------- ---------- ---------- ---------- ------)--- 1081 uggcugcggg c|-ga|GACA ACCU|GGU-| AC-GGGG|ga --|g-cu--- ---------- 1141 ac|ggggga- ---------- ----(gggcg gcuggcgcg- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ------)--- ----)----- 1261 ---------- ---------- --uc-c-u-c -|cuac--|- ---------- --(-----)- 1321 ---------- ------ggu| --ga|UC-CC GU|GGC-|GA -|gccu---- ----(cucg- 1381 ---------- ---------- )|-|------ |--------- ---------( ---------- 1441 ---------- ----)|---- ---------- -------|-| ---------- -g-ggc|--| 1501 CGUC|-GUA| ACGCGCG|-G AA|AGGUG-U C|g|gucggu gguc-----( gcga------ 1561 ---------- ---------- ---------- ---------- ---)-----g gccgccggcu 1621 |UAAGGGA|C GUGCU|a|aa -|cc-|c-gg c---(gaaa- ----)----g ccug|---|c 1681 ccuguga--- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---- cgga---|gc g-------(c 1801 ccacag---- )|-----cgu |-----aaag |------ucc caggg|---- |ggccguacu 1861 uguacaacac ucgggaggaa augcccgggc ggaggccggu auauuuua-- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------| -|-------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---|------ -------|GU 2221 |G||uguuga gcuugacucu aguuug~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS AB044640 DEFINITION Cordyceps prolifica gene for 26S rRNA, partial sequence. ACCESSION AB044640 VERSION AB044640.1 GI:15425655 KEYWORDS . SOURCE Cordyceps prolifica DNA. ORGANISM Cordyceps prolifica Eukaryota; Fungi; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreales; Clavicipitaceae; Cordyceps. REFERENCE 2 (bases 1 to 2549) AUTHORS Nikoh,N. and Fukatsu,T. TITLE Direct Submission JOURNAL Submitted (13-JUN-2000) Naruo Nikoh, National Institute of Bioscience and Human-Technology, Insect-Parasitic/Symbiotic Microorganisms Research Group; 1-1 Higashi, Tsukuba, Ibaraki 305-8566, Japan (E-mail:nikoh@nibh.go.jp, Tel:81-298-61-6087, Fax:81-298-61-6080) MEDLINE 21396391 FEATURES Location/Qualifiers source 1..2549 /organism="Cordyceps prolifica" /db_xref="taxon:94209" rRNA <1..>2549 /product="26S ribosomal RNA" BASE COUNT 573 a 703 c 805 g 468 t ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ggca gaaucagcgg ggaaagaaga cccU||g--( 61 agagcagc-- --ucaa---- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -c|Gggguc- |caa-|AAUa 661 gcg------- ---------- ---------- ---------( ca-------- ---------- 721 ---cau---- ---------- ---------- ---------- ---------) ---------- 781 ---------c g-cuAUU|A- |guc-ca--g cggccg-|-a -ccau----- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- |--cug-ca- 1021 gg|------- ---------- ---------- ---------- ---------- ------)--- 1081 uggccgcggg c|-ga|GACA ACCU|GGU-| AC-GGGG|aa --|g-cc--- ---------u 1141 aa|------- ---------- -----gggcg -ccgagaag- ---------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ----)----- 1261 ---------- ---------- --gc-g---c -|cuac--|- ---------- --(-----)- 1321 ---------- ------ggu| --ga|UC-CC GU|GGC-|GA -|gccccc-- ----(uccuu 1381 gcacuacagu gcagc----- )|-|------ |--------- ---------( ---------- 1441 ---------- ----)|---- ---------- -------|-| ---------g gg-ggc|--| 1501 CGUC|-GUA| ACGCGCG|-G UA|AGGUG-U C|g|gucg-- ---------( cggggguggg 1561 ggaguucgcc cagcgaggcc cccccagccc cuc------- ---)------ -----cggcu 1621 |UAAGGUA|C GUGCU|a|aa -|cc-|cagg c---(gaaa- ----)----g ccug|---|c 1681 gcccagu--- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---- cgga---|gu g-------(c 1801 cugcag---- )|-----cac |-----gaac |------ucu gggcg|---- |gguggccgg 1861 ggcgaugcgu cgaucgaucg agagagcgcg gccgcccgcc gguaguugaa a--------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------| -|-------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---|------ -------|AU 2221 |G||-guuga gcuugacucu aguuugacau ugugaaaag~ ~~~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS AB044639 DEFINITION Cordyceps kanzashiana gene for 26S rRNA, partial sequence. ACCESSION AB044639 VERSION AB044639.1 GI:15425654 KEYWORDS . SOURCE Cordyceps kanzashiana DNA. ORGANISM Cordyceps kanzashiana Eukaryota; Fungi; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreales; Clavicipitaceae; Cordyceps. REFERENCE 2 (bases 1 to 2385) AUTHORS Nikoh,N. and Fukatsu,T. TITLE Direct Submission JOURNAL Submitted (13-JUN-2000) Naruo Nikoh, National Institute of Bioscience and Human-Technology, Insect-Parasitic/Symbiotic Microorganisms Research Group; 1-1 Higashi, Tsukuba, Ibaraki 305-8566, Japan (E-mail:nikoh@nibh.go.jp, Tel:81-298-61-6087, Fax:81-298-61-6080) MEDLINE 21396391 FEATURES Location/Qualifiers source 1..2385 /organism="Cordyceps kanzashiana" /db_xref="taxon:94210" rRNA <1..>2385 /product="26S ribosomal RNA" BASE COUNT 527 a 626 c 774 g 458 t ORIGIN 1 |~~~~~~~~~ ~~~~~~gaag cagaauucgg uaagcguugg auuguucacc cacU||ag-( 61 accacuggag ucuacagaau guuuguuucc a--------- ---------- ---------- 121 ---------- ---------- --)------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- --------|- uu|Gguggg- |aac-|AGUc 661 gg-------- ---------- ---------- ---------( ugcugcuggu ccgucgucgu 721 cccccgggga cgcgcgaacc ucgc------ ---------- ---------) ---------- 781 ---------- c-cgGCU|A- |guc-ga--u guggc--|(- -auac----- ---|------ 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- |accug-ca- 1021 gg|c------ ---------- ---------- ---------- ---------- ------)--- 1081 -gucacacgg c|-ga|CACA ACCU|GGU-| UC-GGGG|ga --|g-gc--- (--------- 1141 ua|agg---- ---------- ---|(gagac ccgaccugac cugcucaggc gggcu----- 1201 ---------- ---------- ---------- ---------- ---------- ---------- 1261 ---------- ---------- -------c-c u|ag----|- ---------- --(-----)- 1321 ---------- ------gcu| --aa|UC-UC GA|GUAC|GA -|gccgcggc gaga(gcga- 1381 ---------- ---------- )|-|------ |--------- ---------( ---------- 1441 ---------- ----)|---- ---------- -------|-| -ucuc-ccgu ca-ggc|--| 1501 CUAC|-GUA| GAGCGCG|-G AA|AGGUG-U G|g|gcgauc ---------( cucgguacag 1561 a--------- ---------- ---------- ---------- ---)------ ---ggucgcu 1621 |UAAGGGA|C GUGCC|a|ga -|cc-|cucg g---(GAAA- ----)----c cgag|---|u 1681 cacggagg-- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---- guga---|gg a-------(c 1801 cugcag---- )|-----ucu |------gag |-----cccc uguga|---- |aggcgcacc 1861 gcuccucugc gagcgacgag ccgcggcagc aaauggccgc ggcgagccug guaaagugcc 1921 cuggaggaga cccuccaggg aga------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------| -|-------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- -------|uc 2221 |G||aauagg gaacgugagc uggguuuaga ccgucgugag ~~~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS GGU17160 DEFINITION Gaeumannomyces graminis var. tritici 26S ribosomal RNA gene, partial sequence. ACCESSION U17160 VERSION U17160.1 GI:882130 KEYWORDS . SOURCE Gaeumannomyces graminis var. tritici. ORGANISM Gaeumannomyces graminis var. tritici Eukaryota; Fungi; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetes incertae sedis; Magnaporthaceae; Gaeumannomyces. REFERENCE 2 (bases 1 to 790) AUTHORS Tan,M. TITLE Direct Submission JOURNAL Submitted (08-NOV-1994) Mui-Keng Tan, NSW Agriculture, Biological & Chemical Research Institute, Victoria Rd/Pemberton St., Rydalmere, NSW 2116, Australia MEDLINE 97315306 PUBMED 9169556 FEATURES Location/Qualifiers source 1..1639 /organism="Gaeumannomyces graminis var. tritici" /db_xref="taxon:36779" /clone="90921/28FN" /tissue_type="mycelium" /dev_stage="mycelia, young" exon <1..630 /number=1 rRNA join(<1..630,1071..1184,1594..>1639) /product="26S ribosomal RNA" intron 631..1070 /note="transcribed insertion sequence" /number=1 exon 1071..1184 /number=2 intron 1185..1593 /note="transcribed insertion sequence" /number=2 exon 1594..1639 /number=3 BASE COUNT 385 a 391 c 496 g 366 t 1 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~gg auuguucacc cacU||aa-( 61 guuccua--- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- --)------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- --------|- uu|Ggugg-- |uaau|AGUc 661 gg-------- ---------- ---------- ---------( gggucggccc agguacuggg 721 ugagaucaug ---------- ---------- ---------- ---------) ---------- 781 ---------- c-cgGCU|A- |guc-ga--u acagu--|(- -uuuauaccc a--|------ 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- |--cug-ca- 1021 gg|------- ---------- ---------- ---------- ---------- -----u)--- 1081 -gcuguacgg c|-ga|CACA ACCU|GGU-| UC-GGGG|ga --|g-gc--- (--------u 1141 aa|ggcg--- ---------- ---|(agguu aauuguauug ca-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ----)----- 1261 ---------- ---------- -----c-g-c u|au----|- ---------- --(-----)- 1321 ---------- ------gcu| --aa|UC-CC GA|GCG-|GA -|gygcug-- ----(ggcg- 1381 ---------- ---------- )|-|------ |--------- ---------( ---------- 1441 ---------- ----)|---- ---------- -------|-| ---------- ca-ggc|--| 1501 CCGU|-GUA| GAGCGCG|-G AA|AGGUG-U G|g|gcucau ---------( uug------- 1561 ---------- ---------- ---------- ---------- ---)------ ---augggcu 1621 |UAAGGGA|C GUGCC|a|aa -|cc-|cucg g---(GAAA- ----)----c cgag|---|c 1681 cccaugc--- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---- ucaa---|gc g-------(c 1801 cugcag---- )|-----cgu |-----aaag |-----gcau agggg|---- |gcgu----- 1861 ------(ac- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ------|cgc ucucg----- |(gucaaa-- ---------) |-----cgag 1981 acg|acaagc uuuggaggga aauauccaaa gcga-gccu| -|gguauucu ucggagaauc 2041 -auuuuuguu acuagucuuc uccgggg--- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- -aagc--|-U 2221 |G||aauagg gaacgugag~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS AB014041 DEFINITION Xylaria polymorpha gene for 18S rRNA, partial sequence. ACCESSION AB014043 NID g3299797 VERSION NONE KEYWORDS 18S rRNA; 18S ribosomal RNA. SOURCE Xylaria polymorpha (strain:IFO9780) DNA. ORGANISM Xylaria polymorpha Eukaryota; Fungi; Ascomycota; Euascomycetes; Pyrenomycetes; Xylariales; Xylariaceae; Xylaria. REFERENCE 2 (bases 1 to 3032) AUTHORS Kawasaki,H. and Miyado,S. TITLE Direct Submission JOURNAL Submitted (15-MAY-1998) to the DDBJ/EMBL/GenBank databases. Hiroko Kawasaki, Osaka University, International Center of Biotechnology; Yamada-oka 2-1, Suita, Osaka 565-0871, Japan (E-mail:kawasaki@icb.osaka-u.ac.jp, Tel:81-6-879-7455, Fax:81-6-879-7454) MEDLINE NONE FEATURES Location/Qualifiers source 1..3032 /organism="Xylaria polymorpha" /strain="IFO9780" /db_xref="taxon:77046" rRNA <1..>3032 /product="18S rRNA" BASE COUNT 799 a 610 c 791 g 824 t 8 others ORIGIN 1 |~~~~~~~~~ ~~~cugaaac uuaaagaaau ugacggaagg gcaccaccag gagU||a--( 61 -aaccgc--- -----agu-- -----uancu c--------- ---------- ---------- 121 ---------- ---------- --)------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- --------|- -u|Gcucc-- |uaaa|AGC- 661 ---------- -uggucc(ga aa--)ggguu ---------( aggugguugc uaauauaca- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ----GCU|A- |GUC-ag--- c--------- --gucu---- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 --g--c-UGG C|-GA|CACC -CUC|CAAU| UG-CGGG|GA AC|U-CC|-- ---U----AA 1141 AG|CAU---C AACU-ACCg- ---------- ---------- ---------- c--g-gcc-- 1201 -u-guc-(GA AA--)gau-a a-g-gu-gc- a|gca-|CC- A-GGU-(uaa ug--)--gc- 1261 c-ucgg|GUA UGGUAAAAA- CGUU-G-G-U G|A-----|u g--------- --(uu-a-)- 1321 ----cn|--- --au|-GGA| -CAA|UC-CG CA|GCC-|AA g|CACC---- ----(----- 1381 ---------- ---------- )|-|------ |--------- ---------( uuaa------ 1441 ---------- ----)|---- -----au--- ---------- ---------- -G-GUG|-A| 1501 AGGU|-UCA| GAGACUU|-G AC|GGGGG-U G|G|GUAccg a--------( agugguuguu 1561 gu-------- ---------- ---------- ---------- ---)------ --uuggUGCU 1621 |UAAGAUA|A AGUCC|-|AU -|gac|uaug cu--(gaaa- ----)---ag cuug|---|u 1681 gaauaacuug uacaucag|g ucuc------ ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---- -------|-- ---------- 1801 ---------- ---------- |--------- |--------- uau--|---- |--------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------| -|-------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------a -------|AC 2221 |G||ggagcc ugcggcuuaa uuugacucaa cacggggaaa cucaccaggu ~~~~~~~~~| 2281 |||| // LOCUS AB012951 DEFINITION Nectria ochroleuca gene for 18S rRNA, partial sequence. ACCESSION AB012952 NID g3721660 VERSION NONE KEYWORDS 18S ribosomal RNA; 18S rRNA. SOURCE Nectria ochroleuca (strain:IAM 14570) DNA. ORGANISM Nectria ochroleuca Eukaryota; Fungi; Ascomycota; Euascomycetes; Pyrenomycetes; Hypocreales; Hypocreaceae; Nectria. REFERENCE 2 (bases 1 to 2472) AUTHORS Ogawa,H. and Sugiyama,J. TITLE Direct Submission JOURNAL Submitted (14-APR-1998) to the DDBJ/EMBL/GenBank databases. Hiroyuki Ogawa, National Institute of Genetics, Center for Information Biology; Yata 1111, Mishima, Shizuoka 411-8540, Japan (E-mail:KFR00124@nifty.ne.jp, Tel:81-559-81-6895, Fax:81-559-81-6896) MEDLINE NONE FEATURES Location/Qualifiers source 1..2472 /organism="Nectria ochroleuca" /strain="IAM 14570" /db_xref="taxon:29856" exon <1..1127 rRNA join(<1..1127,1491..1751,2127..>2472) /product="18S rRNA" intron 1128..1490 /function="Group I intron" exon 1491..1751 intron 1752..2126 /function="Group I intron" exon 2127..>2472 BASE COUNT 642 a 571 c 678 g 581 t ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~aau ugacggaagg gcaccaccag gggU||u--( 61 -aac-agac- -cgcagucgc uc-------- ---------- ---------- ---------- 121 ---------- ---------- --)------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- --------|- -u|Gcccc-- |uaaa|AGC- 661 ---------- -agccgg(ga aa--)cuggu u--------( aggugggaaa guccuuggcc 721 ggaaggccga auacu----- ---------- ---------- ---------- ---------- 781 ---------- ----GCU|A- |GUC-auc-- ---------- --gaac---- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 ---g-A-UGG C|-AA|CACC -CUC|AAAC| UGACGGG|AA CG|U-CC|-- ---U----AA 1141 AG|CCG--AU CAAC-ACCA- ---------- ---------- ---------- A--G-CAG-g 1201 -c-gucc(GA AA--)ggu-g c-C-UG-UG- G|----|CC- G-AGC-(uaa ua--)--GC- 1261 C-CUGG|AGA UGGUAAAAG- CUUG-AUC-G G|A-----|u g--------- --(cu-a-)- 1321 ----ca|--- --au|-GGA| -UAA|CU-CG CA|GCC-|AA g|cccc---- ----(----- 1381 ---------- ---------- )|U|ac---- |gugu----- ---------( uccg------ 1441 ---------- ----)|---- ---------- -a-c-au|A| C--------- -g-ggg|-A| 1501 AGGU|-UCA| GAGACUU|-A AC|GGGGG-U G|G|GUGugg u--------( guag------ 1561 ---------- ---------- ---------- ---------- ---)------ --accaUGCC 1621 |UAAGAUA|A AGUCC|-|GU -|c--|cgcc ugc-(gaaa- ----)--gcu ugcg|---|- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---- -------|-- ---------- 1801 ---------- ---------- |--------- |--------- -----|---- |--------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------| -|-------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- --aauacaac cgu|--aaaa -------|AC 2221 |G||ggagcc ugcggcuuaa uuugacucaa c~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS AB031191 DEFINITION Cordyceps coccidiicola gene for 18S rRNA, partial sequence. ACCESSION AB031195 VERSION AB031195.1 GI:7619985 KEYWORDS 18S rRNA; 18S ribosomal RNA. SOURCE Cordyceps coccidiicola DNA. ORGANISM Cordyceps coccidiicola Eukaryota; Fungi; Ascomycota; Hypocreales; Clavicipitaceae; Cordyceps. REFERENCE 2 (bases 1 to 3039) AUTHORS Nikoh,N. and Fukatsu,T. TITLE Direct Submission JOURNAL Submitted (17-AUG-1999) to the DDBJ/EMBL/GenBank databases. Naruo Nikoh, NIBH, Insect-Parasitic Symbiotic Microorganisms Research Group; 1-1 Higashi, Tsukuba, Ibaraki 305-8566, Japan (E-mail:nikoh@nibh.go.jp, Tel:81-298-54-6087, Fax:81-298-54-6080) MEDLINE NONE FEATURES Location/Qualifiers source 1..3039 /organism="Cordyceps coccidiicola" /db_xref="taxon:102624" rRNA <1..>3039 /product="18S ribosomal RNA" BASE COUNT 649 a 848 c 993 g 549 t ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~agaaau ugacggaagg gcaccaccag gggU||a--( 61 -aaca----- -----c---- ---gcagucg -cuc------ ---------- ---------- 121 ---------- ---------- --)------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- --------|- -u|Gcccc-- |caag|AGCA 661 ---------- --gccgg(ga aa--)ccgg- ---------( ccggucgggu ccuuggccgc 721 gaggccgaag ca-------- ---------- ---------- ---------- ---------- 781 ---------- ---cGCU|A- |GUC-Gcccc ---------- --cc------ ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------g 1081 ggg--C--GG C|-GA|CACC -CUC|CAAU| UG-CGGG|GA C-|U-CC|-- ---Cua--aa 1141 gc|CGA---C CGGG-ACCA- ---------- ---------- ---------- A--G-CGG-G 1201 -C-GCC-(GA GAg-)GGC-G UcC-CG-UG- G|----|cc- g-ggu-(uaa cg--)--ac- 1261 c-ccgg|GUA CGGUAACAC- GCCG-G-U-C G|ga----|u g--------- --(gaaga)- 1321 ----ca|--- --au|-GGG| -UGA|UC-CG CA|GCC-|AA G|CGCC---- ----(----- 1381 ---------- ---------- )|u|acc--- |cggc----- ---------( gggugagccc 1441 acgggcgacc c---)|---- ---------g -c-c-gc|A| G--------- -G-GCG|-A| 1501 AGGU|-CCA| GAGACUU|-G AC|GGGGG-U G|G|GUCggg cg-------( cgcg------ 1561 ---------- ---------- ---------- ---------- ---)------ -cgcccGGCC 1621 |UAAGAUG|A AGUCC|-|Gu -|---|cugc gcgc(GAGA- ----)gcgcg acag|---|- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---- -------|-- ---------- 1801 ---------- ---------- |--------- |--------- -----|---- |--------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------| -|-------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ----agcccu gaagaaa|aC 2221 |G||ggagcc ugcggcuuaa uuugacucaa cacggggaaa c~~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS AB079121 DEFINITION Beauveria bassiana genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 26S rRNA, partial and complete sequences. ACCESSION AB079125 VERSION AB079125.1 GI:18461162 KEYWORDS . SOURCE Beauveria bassiana (strain:IFO 8554) DNA. ORGANISM Beauveria bassiana Eukaryota; Fungi; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreales; Clavicipitaceae; Cordyceps. REFERENCE 2 (bases 1 to 3053) AUTHORS Yokoyama,E. and Hara,A. TITLE Direct Submission JOURNAL Submitted (30-JAN-2002) Eiji Yokoyama, Meijo University, The Agricultural High-Tech Research Center; Tempaku-ku, Nagoya, Aichi 468-8502, Japan (E-mail:yokoyama@ccmfs.meijo-u.ac.jp, Tel:81-52-832-1151(ex.3671)) MEDLINE NONE FEATURES Location/Qualifiers source 1..3053 /organism="Beauveria bassiana" /strain="IFO 8554" /db_xref="taxon:5582" rRNA <1..2515 /product="18S ribosomal RNA" misc_RNA 2516..2676 /note="ITS1" rRNA 2677..2834 /product="5.8S ribosomal RNA" misc_RNA 2835..2995 /note="ITS2" rRNA 2996..>3053 /product="26S ribosomal RNA" BASE COUNT 755 a 765 c 839 g 694 t ORIGIN 1 |~~~~~~~~~ ~~~~~gaaac uuaaagaaau ugacggaagg gcaccaccag gggU||a--( 61 -aaccgcuuc augcagcc-- ---gcaguag -cuc------ ---------- ---------- 121 ---------- ---------- --)------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- --------|- -u|Gcucc-- |caaa|AGCA 661 ---------- ---gccc(ga aa--)gggu- ---------( ca-guggugu uccuguccgc 721 gcucc-ggcg cggcgaacca ag-------- ---------- ---------- ---------- 781 ---------- ---uGCU|A- |GUC-UC--- ---------- --uccg---- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 --g--a--GG C|-GA|CACC -CUC|AAAU| UG-CGGG|AA AC|U-UC|-- ---U----AA 1141 AA|CCA---G UGUC-ACCA- ---------- ---------- ---------- A--G-CCG-G 1201 -C-GUC-(GA AAA-)GGC-g u-c-gg-ug- g|----|ccg g-ggc-(aau g---)--ac- 1261 c-uagg|GUA CGGUAAAAG- CACA-C-U-G G|au----|- ---------- --(a--u-)- 1321 ------|--- --au|-GGA| -CAA|UC-CG CA|GCC-|AA G|CCUC---- ----(----- 1381 ---------- ---------- )|-|------ |--------- ---------( guc------- 1441 ---------- ----)|---- ---------- -------|A| C--------- -G-GGG|-A| 1501 AGGU|-UCA| GAGACUA|-A AU|GGGGG-U G|G|GUAgug ---------( ugcuggagga 1561 uucguccucc gagcgcucgc ucaca----- ---------- ---)------ ---cacUGCU 1621 |UAAGAUA|U AGUCC|-|gc -|c--|cgcg cug-(GAAA- ----)--cag cgcg|---|g 1681 auuggcaagc uca------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---- -------|-- ---------- 1801 ---------- ---------- |--------- |--------- -----|---- |--------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------| -|-------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- -------aau aa-----|AC 2221 |G||ggagcc ugcggcuuaa uuugacucaa cacggggaaa cucaccag~~ ~~~~~~~~~| 2281 |||| // LOCUS AB007681 DEFINITION Graphium penicillioides gene for 18S rRNA, partial sequence, strain:JCM9299 (CBS470.71). ACCESSION AB007681 NID g4586362 VERSION AB007681.1 GI:4586362 KEYWORDS 18S ribosomal RNA. SOURCE Graphium penicillioides (strain:JCM9299 (CBS470.71)) DNA. ORGANISM Graphium penicillioides Eukaryota; Fungi; Ascomycota; Euascomycetes; Pyrenomycetes; Microascales; Microascaceae; mitosporic Microascaceae; Graphium. REFERENCE 2 (bases 1 to 2105) AUTHORS Okada,G. and Takematsu,A. TITLE Direct Submission JOURNAL Submitted (28-SEP-1997) to the DDBJ/EMBL/GenBank databases. Gen Okada, The Institute of Physical and Chemical Research (RIKEN), Japan Collection of Microorganisms; Hirosawa 2-1, Wako, Saitama 351-0198, Japan (E-mail:okada@ulmus.riken.go.jp, Tel:+81-48-462-1111(ex.5124), Fax:+81-48-462-4619) COMMENT The sequence was determined by A. Takematsu. MEDLINE NONE FEATURES Location/Qualifiers source 1..2105 /organism="Graphium penicillioides" /strain="JCM9299 (CBS470.71)" /db_xref="taxon:67620" rRNA join(<1..1142,1501..>2105) /note="Corresponding to 24-1774 nt positon of 18S rRNA S. cerevisiae: Acc#(M27607)" /product="18S rRNA" intron 1143..1500 /note="group I intron just after 1165 nt position in S. cerevisiae" BASE COUNT 528 a 490 c 586 g 494 t 7 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~ggaagg gcaccaccag gggU||a--( 61 -aacugcaaa gccguaucgc uc-------- ---------- ---------- ---------- 121 ---------- ---------- --)------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- -u|Gcccc-- |ggaa|AGCg 661 agcc------ ---------- ---------- ----cguaac ggguccagu- gg-ucgcc-- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ------ggca u-uCGCU|Aa |GUCugc--- ---------- --acgcgca- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 -----G-cGG C|-GA|CACC -CUC|AAAU| UG-CGGG|GA AC|C-CU|-- ---C----GA 1141 AG|GGC--GU CACU-CCUA- ---------- ---------- ---------- A--G--GA-C 1201 -G-GUC-(GA AA--)GGC-G C-GCUA-UG- G|----|ng- c-agc-(gua acg-)--gc- 1261 u-g-cn|nUA CAGGGACAA- CGUG-Anc-c u|agg---|- ---------- --(-----)- 1321 ---------- ------AGG| -CGA|UU-CG AA|GCC-|AA G|cuccu--- ----(-accn 1381 gcgccccggc gccg------ )|-|------ |--------- ---------( ---------- 1441 ---------- ----)|---- ---------- -------|U| A--------g -g-gag|-A| 1501 AGGU|-CCA| GAGACUU|-G AC|GGGGG-U G|G|GUAggu cc-------( ucgc------ 1561 ---------- ---------- ---------- ---------- ---)------ -gggccCGCC 1621 |UAAGAUA|A AGUCC|g|ug -|---|ccun cgc-(GAGA- ----)--gcg cggg|---|a 1681 augcu----- ------(cca ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---- -------|-- ---------- 1801 ---------- ---------- |--------- |--------- -agca|---- |--------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------| -|-------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- --gagccccg ga-----|aa 2221 |G||ggg--c ugcggcuuaa uuugacucaa cacgggg~~~ ~~~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS AB055861 DEFINITION Stichococcus bacillaris gene for 18S rRNA, partial sequence, strain:CCAP379/7. ACCESSION AB055864 VERSION AB055864.1 GI:13122408 KEYWORDS . SOURCE Stichococcus bacillaris (strain:CCAP379/7) DNA. ORGANISM Stichococcus bacillaris Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Microthamniales; Stichococcus. REFERENCE 2 (bases 1 to 3184) AUTHORS Hanagata,N. TITLE Direct Submission JOURNAL Submitted (15-FEB-2001) Nobutaka Hanagata, The University of Tokyo, Research Center for Advanced Science and Technology; Komaba 4-6-1, Meguro-ku, Tokyo 153-8904, Japan (E-mail:hanagata@bio.rcast.u-tokyo.ac.jp, Tel:81-3-5452-5320, Fax:81-3-5452-5321) MEDLINE NONE FEATURES Location/Qualifiers source 1..3184 /organism="Stichococcus bacillaris" /strain="CCAP379/7" /db_xref="taxon:37433" rRNA join(<1..564,1023..1376,2091..2693,3165..>3184) /product="18S ribosomal RNA" intron 565..1022 intron 1377..2090 intron 2694..3164 BASE COUNT 778 a 756 c 905 g 745 t ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~aga agucguaaca aggU||uuc( 61 -c-----uuu cgucca---- --gguc-aua u-ucaaaauc accugcu--- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------g aa|Gccuc-- -----|AGC- 661 ---------- --cgccc(ga aa--)gggug ---------- -cucgc---- -cgcgacuu- 721 --uauucgac accguuuaaa aa--u-aaa- ----gagcga gcugaaagu- ---------- 781 ---------- ----GCU|A- |GUC-GG--- ---------- --cucucuau ucaaaaggga 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 -----C-CGG C|-GA|CACC -GUC|AAAU| UG-CGGG|GA CG|C-CC|-- ---Ac---CC 1141 GA|CUCu--C GAAC-ACCA- ---------- ---------- ---------- A--G-CGG-c 1201 -ucgcc-(ga caa-)ggc-G C-C-CG-CG- G|----|CC- GGGGU-(-aa cg--)--AC- 1261 C-CAGG|GUA UGGUAACAG- CGUC-GaG-A G|g-----|a gaugccgcgg uu(uuauu)a 1321 aacgcggugg aagu|-GGG| -UCA|UC-CG CA|GCC-|AA -|GUCC---- ----(----- 1381 ---------- ---------- )|U|AC---- |ggccuu--- --------u( uccuacuugu 1441 g--------- ----)|---- --------ag -g-g-cc|A| AA-------- -G-GAU|-G| 1501 CUGU|-UCA| CAGACUA|-C AU|GGCGG-U G|G|GUAcgc uuuuuc---( uauuc----- 1561 ---------- ---------- ---------- ---------- ---)---gaa ugagcgUGCC 1621 |UAAGAUA|U AGUCG|-|GG -|ccc|cccc g---(GCAA- ----)----c gggg|---|- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---- -------|-- ---------- 1801 ---------- ---------- |--------- |--------- -----|---- |--------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------| -|-------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- --uguugggu aagcaaacca aaccag---- -cgcagu-uu uca----|CC 2221 |G||uuccgu aggugaaccu gcggaagg~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS AF342745 DEFINITION Bangia fuscopurpurea 18S small subunit ribosomal RNA gene, complete sequence. ACCESSION AF342745 VERSION AF342745.1 GI:13445799 KEYWORDS . SOURCE Bangia fuscopurpurea. ORGANISM Bangia fuscopurpurea Eukaryota; Rhodophyta; Bangiophyceae; Bangiales; Bangiaceae; Bangia. REFERENCE 2 (bases 1 to 3341) AUTHORS Bhattacharya,D., Mueller,K.M., Oliveira,M.C. and Sheath,R.G. TITLE Direct Submission JOURNAL Submitted (25-JAN-2001) Biological Sciences, University of Iowa, 239 Biology Building, Iowa City, IA 52242, USA MEDLINE NONE FEATURES Location/Qualifiers source 1..3341 /organism="Bangia fuscopurpurea" /strain="SAG B 59.81" /db_xref="taxon:101920" rRNA join(1..562,1559..2787,3312..3341) /note="SSU rRNA" /product="18S small subunit ribosomal RNA" /evidence=not_experimental intron 563..1558 /note="group I intron" /evidence=not_experimental intron 2788..3311 /note="group I intron" /evidence=not_experimental BASE COUNT 864 a 743 c 902 g 832 t ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~gucguaaca aggU||uu-( 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- --)-gcu|[a aggcaacag- --(aagu-)- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 -----cuuga auggccuu]| cuguaggaag cgcuuacc|g aa|Gccuu-- |----|UGCA 661 ---------- --gccc-(ga aa--)-gggu ---------- cgcgau---- -cgcgacuuu 721 ac-------- ---uaaau-a acga------ ------aucg ccuuaaa--- ---------- 781 ---------- ---UGCA|A- |GUG-GC--- ---------- --gggcacua ugau(ucag) 841 auca-----u caagcca--- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 -----G-CUG C|-GA|CUUU -CUC|AAAU| UG-CGGG|AA CA|C-CC|-- ---Ua---AA 1141 GC|CGA---U AGAU-ACCG- ---------- ---------- ---------- C--G-GCC-G 1201 -C-GUG-(ga uuaa)CAC-G U-A-G--CG- C|agca|GC- A-Gggg(uag ug--)c-cc- 1261 U-U-GU|GGA UGGUAAAAA- CUCU-C-U-C G|gaua--|u gagucac--- --(gcac-)- 1321 --augacuaa gaau|-GGG| -CAA|UC-CG CA|GCC-|AA g|CUCC---- ----(----- 1381 ---------- ---------- )|a|aua--- |ccuggc--- ---------( uuu------- 1441 ---------- ----)|---- --------gu -c-g-gg|u| ---------- -G-GAG|-A| 1501 AGGU|-UCA| CAGACUG|-U AA|GGGAA-G G|G|GUGgag c--------( cacaauu-gu 1561 g--------- ---------- ---------- ---------- ---)------ --gcacUGCU 1621 |UAAGAGA|C AGUCG|-|GU -|c--|cccu gc--(GAAA- ----)---gc agug|---|u 1681 uccgugg--- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---- --aggau|gg guc-uugc(- 1801 gaag------ )guaagaacc |-|agaga-g |------cca cggga|---- |gcuucuc-- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- (uucg----- ---------- ---------- 1981 ---------- ---------- ---------- --aagaagu| -|------gg guaguuuc(c 2041 aaauuaac-- ---------- ---------- --)gaaa--- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -ucauua--- ---------- -------|AC 2221 |G||uuccgu aggugaaccu gcagaaggau caag~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS PRHRLFLA DEFINITION Porphyra spiralis var. amlifolia ACCESSION L26177 VERSION NONE KEYWORDS NONE SOURCE PRHRLFLA ORGANISM Porphyra spiralis var. amlifolia REFERENCE NONE AUTHORS NONE TITLE NONE JOURNAL NONE MEDLINE NONE FEATURES NONE ORIGIN 1 |~~~~~~~au cauuaaaucu uaucauuuag aggaaggaga agucguaaca aggU||uuc( 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- --)cgaa|[a ggg(gcaaag aggacuagug acucauccaa 181 agacuuacga gaugcuuuau uagacgcacu gcguguauga agacacuugg aacuccgggu 241 gguuacgcau gagacggcag uagaugcgac uuuuguucag gucgccggac uccaacguua 301 aaugcgccuu guugacacac uuagcguugu ggcacgugug ggacgccucu ucaccaggga 361 gagggagacg cucagucgcu gccaccgcga caaugaugug gcaauaguac uucgugccuu 421 gauagcgcag uuggacguaa ccgccagaga ccuuagcagg ggcguagucc gucacaaugc 481 agccguucuc cauggagugc gaaugcuucu cuaacugcuc caguacagcu ugcuggacgu 541 gauggagcaa gaacuucucg uaagcguggg ugggcgcgac guccauggua augagaccuu 601 cucugcagga cauacccu]| ---------- -----acu|g aa|Gccuu-- |----|UGCG 661 ---------- --gccc-(ga aa--)-gggu ---------- gcgcggu--- -cacgacauu 721 ---------- ----aaau-a aaga------ -----gccgu guucaa---- ---------- 781 ---------- ---CGCA|A- |GUG-AC--- ---------- --ggggagag aggacugaaa 841 guga-----c ggggaaaagu cgcu(uuugu u)ggcgacuu ucccgagugg gggaugccaa 901 gguauuauau cgcgguauau auauauccua caauagacga cgcagucagu ccgaaaaccc 961 a--------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 -----G-UUG C|-UA|CCUU -UUC|AAAU| UG-CGGG|AA UC|C-CC|-- ---Ua---AG 1141 AG|CCCa--U CACU-ACCG- ---------- ---------- ---------- C--G-GCC-G 1201 -UUGUG-(ga aaa-)CAC-U C-G-G--UG- C|agca|GG- C-Gagg(uag uu--)c-cc- 1261 c-G-CU|GGA UGGUAAUAA- GGUG-AuG-G G|Auu---|- gu-cuc---- --(uaga-)- 1321 ---gacuu-g caau|-GGG| -CAA|UC-CG CA|GCC-|AA g|UCCC---- ----(----- 1381 ---------- ---------- )|u|gu---- |--------- ---------( caa------- 1441 ---------- ----)|---- ---------- -------|a| u--------- -G-GGA|-A| 1501 AGGU|-UCA| CAGACUG|-U AA|GGAAA-G G|G|GUGccg c--------( uuccuauuac 1561 ---------- ---------- ---------- ---------- ---)------ --gcggCGCU 1621 |UAAGAGA|C AGUCG|-|GU -|c--|cccu gc--(GAAA- ----)---gc agag|---|u 1681 cccga----- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|-auu ggaggaa|aa ggc-ccau(- 1801 uaaaa----- )gugggcuuu |-|ggaga-g |------ccu cggga|---- |ggcc----- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- (agagaggaa aggcuccgcg cccuccucac 1981 uc-------- ---------- ---------- -----ggcu| -|-------g gguucaag(u 2041 cc-------- ---------- ---------- --)uuug--- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -acuuu---- ---------- -------|AU 2221 |G||uuccgu aggugaaccu gcagaaggau caagc~~~~~ ~~~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS HLDRGEA DEFINITION Hildenbrandia rubra 18S ribosomal RNA gene, complete exons. ACCESSION L19345 NID g348832 VERSION L19345.1 GI:348832 KEYWORDS 18S ribosomal RNA. SOURCE Hildenbrandia rubra vegetative DNA. ORGANISM Hildenbrandia rubra Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 1 (bases 1 to 2283) AUTHORS Ragan,M.A., Bird,C.J., Rice,E.L. and Singh,R.K. TITLE The nuclear 18S ribosomal RNA gene of the red alga Hildenbrandia rubra contains a group I intron JOURNAL Nucleic Acids Res. 21, 3898-3898 (1993) MEDLINE 93376522 FEATURES Location/Qualifiers source 1..2283 /organism="Hildenbrandia rubra" /db_xref="taxon:31481" /tissue_type="vegetative" primer_bind 1..22 /note="PCR amplification primer; putative" exon 23..1750 /note="putative" /product="18S ribosomal RNA" intron 1751..2252 /note="group I intron; putative" exon 2253..2256 /note="putative" /product="18S ribosomal RNA" primer_bind 2257..2281 /note="PCR amplification primer; putative" BASE COUNT 563 a 476 c 684 g 559 t 1 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~guaaca aggU||uuu( 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- --)|---|[a u(ccu)---- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ------au]| ---------- -------g|g aa|Gccuu-- |----|UGCA 661 ---------- --gccc-(ga ugaa)-gggu ---------- gggcg-c--- ucgcgacuag 721 au-------- ----aaau-a augacgaa-- -------ugc cugaaa---- ---------- 781 ---------- ---UGCA|A- |GCG-GC--- ---------- --ggaacauc u(cuuuua)g 841 ggug-----u uug------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 -----G-CCG C|-GA|UCUU -CUC|AAAU| UG-CGGG|AA AA|gugc|-- ---UcaaaUU 1141 GG|CCGu-aA AGAC-ACCG- ---------- ---------- ---------- C--G-GCU-C 1201 UU-GUG-(ga caa-)CAC-A G-A-G--UG- C|agca|GG- C-Gggg(uag ca--)c-cc- 1261 U-G-CU|GGA UGGUAACAG- AUCU-UuC-G G|Aca---|- ---------- --(cgg--)- 1321 ---------- ----|-GCC| -UAA|UC-CG CA|GCC-|AA g|CUCC---- ----(----- 1381 ---------- ---------- )|G|UA---- |gcgcauu-- ---------( uuuguu---- 1441 ---------- ----)|---- -------agu -g-c-gu|c| ---------- -G-GAG|-A| 1501 AGGU|-UCA| CAGACUG|-U AA|GGGAA-G G|G|GUUcgc ac-------( uugu------ 1561 ---------- ---------- ---------- ---------- ---)------ -gugcgGGCU 1621 |UAAGAGA|C AGUCG|-|GU -|cc-|cucu gu--(GAGA- ----)---gc agag|---|u 1681 uccgggu--- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---u ugaggaa|gg ugc-gccg(- 1801 ccgacaaa-- )ugggccacc |-|agaga-g |-----cgcc uggag|---- |agucg---- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- (uguguuuug cggguguuug cggauaacuc 1981 gcgcgcguga u--------- ---------- ----uggcu| -|-------- -uuucuga(a 2041 cggaa----- ---------- ---------- --)ucaa--- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -aaa------ ---------- -------|AU 2221 |G||uuccgu aggugaaccu gcagaaggau cagaa~~~~~ ~~~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS AY571894 DEFINITION Hildenbrandia rubra strain MA small subunit ribosomal RNA gene, group IC1 intron. ACCESSION AY571894 VERSION AY571894.1 GI:50299448 KEYWORDS . SOURCE Hildenbrandia rubra ORGANISM Hildenbrandia rubra Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 2 (bases 1 to 498) AUTHORS Muller,K.M., Ellenor,D.W., Sherwood,A.R., Sheath,R.G., Cannone,J.J. and Gutell,R.R. TITLE Direct Submission JOURNAL Submitted (10-MAR-2004) Biology, University of Waterloo, 200 University Ave West, Waterloo, ON N2L 3G1, Canada MEDLINE NONE FEATURES Location/Qualifiers source 1..498 /organism="Hildenbrandia rubra" /mol_type="genomic DNA" /strain="MA" /db_xref="taxon:31481" rRNA <1..>8 /product="small subunit ribosomal RNA" intron 9..>498 /note="group IC1 intron" ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~aaca aggU||uua( 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- --)----|[u c(auu)---- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ------ga]| ---------- ---agacg|g ca|Gcuuu-- |----|AGCA 661 ---------- --gccu-(aa uaa-)-gggu ---------- ggcug-c--- ucgcuucuau 721 aacaucauau auaaaaau-a augacagc-- -------agc cugaaa---- ---------- 781 ---------- ---UGCA|A- |GCG-GC--- ---------- --gg(cucau a)-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 -----G-CCG C|-AA|CUUU -CUC|AAAU| UG-CGGG|AA AA|gugc|-- ---Ucaaa-U 1141 G-|CCGa-cA AGAC-ACCG- ---------- ---------- ---------- C--G-GCU-C 1201 AU-GUG-(ga uaa-)CAC-A G-A-G--UG- C|agca|GG- U-Aggg(uaa ug--)c-uc- 1261 U-A-CU|GGA UGGUAAUAG- CUCU-UuC-G G|Aua---|- ---------- --(ugu--)- 1321 ---------- ----|-GCC| -UAA|UC-CG CA|GCC-|AA g|CUCC---- ----(----- 1381 ---------- ---------- )|G|UA---- |gcac----- ---------( acgccgcguc 1441 gcgcgcgc-- ----)|---- ---------- -g-u-gc|c| ---------- -G-GAA|-A| 1501 AGGU|-UCA| CAGACUG|-U AA|GGGAA-G G|G|GUCuac gcacacgaa( aacaugaaaa 1561 acaugaagau ug-------- ---------- ---------- ---)uuugug cgcgggGGCU 1621 |UAAGAGA|C AGUCG|-|GU -|cc-|cucu gu--(GAGA- ----)---gc agag|---|u 1681 ucugggu--- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|uuuu agaggaa|gg cgc-gcca(- 1801 cc-u-aaa-- )uaggccgcc |-|ggaga-g |-----cgcc cagag|---- |aauca---- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- (ugugauaag cggcauu--- ---------- 1981 ---------- ---------- ---------- ----ugag~| ~|~~~~~~~~ ~~~~~~~~(~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 2221 |~||~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS AY571895 DEFINITION Hildenbrandia rubra strain NS small subunit ribosomal RNA gene, group IC1 intron. ACCESSION AY571895 VERSION AY571895.1 GI:50299449 KEYWORDS . SOURCE Hildenbrandia rubra ORGANISM Hildenbrandia rubra Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 2 (bases 1 to 498) AUTHORS Muller,K.M., Ellenor,D.W., Sherwood,A.R., Sheath,R.G., Cannone,J.J. and Gutell,R.R. TITLE Direct Submission JOURNAL Submitted (10-MAR-2004) Biology, University of Waterloo, 200 University Ave West, Waterloo, ON N2L 3G1, Canada MEDLINE NONE FEATURES Location/Qualifiers source 1..498 /organism="Hildenbrandia rubra" /mol_type="genomic DNA" /strain="NS" /db_xref="taxon:31481" rRNA <1..>8 /product="small subunit ribosomal RNA" intron 9..>498 /note="group IC1 intron" ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~aaca aggU||uuc( 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- --)--ac|[a u(uga)---- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ------au]| ---------- -----acg|g aa|Gccuu-- |----|UGCA 661 ---------- --gccc-(ga u-aa)-gggu ---------- gggcg-c--- ucgcgacuuu 721 uau------- ---aucauau auaaaaauaa ugacagcagc cugaaa---- ---------- 781 ---------- ---UGCA|A- |GCG-GC--- ---------- --g(cucaua )--------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 -----G-CCG C|-AA|CUUU -CUC|AAAU| UG-CGGG|AA AA|gugc|-- ---Ucaaa-U 1141 G-|CCGa-cA AGAC-ACCG- ---------- ---------- ---------- C--G-GCU-C 1201 AU-GUG-(ga uaa-)CAC-A G-A-G--UG- C|agca|GG- U-Aggg(uaa ug--)c-uc- 1261 U-A-CU|GGA UGGUAAUAG- CUCU-UuC-G G|Aua---|- ---------- --(ugu--)- 1321 ---------- ----|-GCC| -UAA|UC-CG CA|GCC-|AA g|CUCC---- ----(----- 1381 ---------- ---------- )|G|UA---- |gcac----- ---------( acgccgcguc 1441 gcgcgcgc-- ----)|---- ---------- -g-u-gc|c| ---------- -G-GAA|-A| 1501 AGGU|-UCA| CAGACUG|-U AA|GGGAA-G G|G|GUCuac gcacacgaa( aacaugaaaa 1561 acaugaagau ug-------- ---------- ---------- ---)uuugug cgcgggGGCU 1621 |UAAGAGA|C AGUCG|-|GU -|cc-|cucu gu--(GUGA- ----)---gc agag|---|u 1681 ucugggu--- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|uuuu agaggaa|gg cgc-gcca(- 1801 cc-u-aaa-- )uaggccgcc |-|ggaga-g |-----cgcc cagag|---- |aauca---- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- (ugugcuaag cggcauu--- ---------- 1981 ---------- ---------- ---------- ----ugauu| ~|~~~~~~~~ ~~~~~~~~(~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 2221 |~||~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS AY571896 DEFINITION Hildenbrandia rubra strain CT small subunit ribosomal RNA gene, group IC1 intron. ACCESSION AY571896 VERSION AY571896.1 GI:50299450 KEYWORDS . SOURCE Hildenbrandia rubra ORGANISM Hildenbrandia rubra Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 2 (bases 1 to 463) AUTHORS Muller,K.M., Ellenor,D.W., Sherwood,A.R., Sheath,R.G., Cannone,J.J. and Gutell,R.R. TITLE Direct Submission JOURNAL Submitted (10-MAR-2004) Biology, University of Waterloo, 200 University Ave West, Waterloo, ON N2L 3G1, Canada MEDLINE NONE FEATURES Location/Qualifiers source 1..463 /organism="Hildenbrandia rubra" /mol_type="genomic DNA" /strain="CT" /db_xref="taxon:31481" rRNA <1..>8 /product="small subunit ribosomal RNA" intron 9..>463 /note="group IC1 intron" ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~aaca aggU||uuc( 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- --)|---|-a u-cuucugga ggucacuugc c--------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- --------|g aa|Gccuu-- |----|UGCA 661 ---------- --gccc-(ga u-aa)-gggu ---------- gggcg-u--- ucgcgacu-u 721 aaa------- ---aaaau-a augauaac-- -------agc cugaaa---- ---------- 781 ---------- ---UGCA|A- |GCG-GC--- ---------- --g(uuuaca )--------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 -----G-CCG C|-AA|CUUU -CUC|AAAU| UG-CGGG|AA AA|-ugc|-- ---ucaaa-U 1141 G-|CCGa-aA AGAC-ACCG- ---------- ---------- ---------- C--G-GCU-C 1201 AU-GUG-(ga uaa-)CAC-A G-A-G--CG- C|agca|GG- U-Aggg(uaa ug--)c-uc- 1261 U-A-CU|GGA UGGUAAUAG- CUCU-UuC-G G|Aua---|- ---------- --(ugu--)- 1321 ---------- ----|-GCC| -UGA|UC-CG CA|GCC-|AA u|UUCC---- ----(----- 1381 ---------- ---------- )|G|UA---- |gcgcacgca ---------( ugu------- 1441 ---------- ----)|---- -----ugcgu -g-c-gc|c| ---------- -G-GAA|-A| 1501 AGGU|-UCA| CAGACUG|-U AA|GGGAA-G G|G|GUCcgu ---------( cgucgcacaa 1561 guggc----- ---------- ---------- ---------- ---)------ ---gcgGGCU 1621 |UAAGAGA|C AGUCG|-|GU -|cc-|cucu gu--(GCGA- ----)---gc agag|---|u 1681 ucugggu--- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|-uuu agaggaa|gg cgc-gcca(- 1801 cc-u-aaa-- )uaggccgcc |-|ggaga-g |-----cgcc cagag|---- |aauca---- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- (ugugcuaug cggcauu--- ---------- 1981 ---------- ---------- ---------- ----uggg~| ~|~~~~~~~~ ~~~~~~~~(~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 2221 |~||~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS AY571897 DEFINITION Hildenbrandia rubra strain CA small subunit ribosomal RNA gene, group IC1 intron. ACCESSION AY571897 VERSION AY571897.1 GI:50299451 KEYWORDS . SOURCE Hildenbrandia rubra ORGANISM Hildenbrandia rubra Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 2 (bases 1 to 526) AUTHORS Muller,K.M., Ellenor,D.W., Sherwood,A.R., Sheath,R.G., Cannone,J.J. and Gutell,R.R. TITLE Direct Submission JOURNAL Submitted (10-MAR-2004) Biology, University of Waterloo, 200 University Ave West, Waterloo, ON N2L 3G1, Canada MEDLINE NONE FEATURES Location/Qualifiers source 1..526 /organism="Hildenbrandia rubra" /mol_type="genomic DNA" /strain="CA" /db_xref="taxon:31481" rRNA <1..>8 /product="small subunit ribosomal RNA" intron 9..>526 /note="group IC1 intron" ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~aaca aggU||uuu( 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- --)|---|-u accagugaaa uac------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- -------g|g aa|Gccuu-- |----|UGCA 661 ---------- --gccc-(ga cc--)-ggga acgguaagaa gggugagcgc ucgcgacugg 721 ga-------- ---uaaag-a augacgaa-- -------cgc uuag------ ---------- 781 ---------- ---UGCA|A- |GCG-GC--- ---------- --ggaacaga uu(uuuugau 841 gguu-----u )aaucuguuc gg-------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 -----G-CCG C|-AA|CUUU -UCC|AAAU| UG-CGGG|AA AA|gcgc|-- ---ucaauUU 1141 GG|CCG--gA AGAC-ACCG- ---------- ---------- ---------- C--G-GCU-C 1201 UA-GUG-(ga caa-)CAC-A G-A-G--UG- C|agca|GG- C-Gggg(uag ca--)c-cc- 1261 U-G-CU|GGA UGGUAACAG- UUCU-UcC-G G|Aca---|- ---------- --(cgg--)- 1321 ---------- ----|-GCC| -UAA|UC-CG CA|GCC-|AA g|CUCC---- ----(----- 1381 ---------- ---------- )|G|UA---- |gcac----- ---------( auu------- 1441 ---------- ----)|---- ---------- -g-u-gc|c| ---------- -G-GAG|-A| 1501 AGGU|-UCA| CAGACUG|-U AA|GGGAA-G G|G|GUCcgc guaugcg--( cguaugcgca 1561 ---------- ---------- ---------- ---------- ---)--cgcg uacgcgGGCU 1621 |UAAGAGA|C AGUCG|-|GU -|cc-|cucu gu--(GAAA- ----)---gc agag|---|u 1681 uccgggu--- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---u ugaggaa|gg ugu-gccg(- 1801 gcaaaa---- )uggcccgcc |-|ugaga-g |-----cgcc cggag|---- |aaucg---- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- (ugug----- ---cgcacgc a--------c 1981 gc-a-cguga u--------- ---------- ----uggcu| -|-------- ----cuga-a 2041 caggagaauu gcccacgcca c~~~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 2221 |~||~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS AY571898 DEFINITION Hildenbrandia rubra strain AK small subunit ribosomal RNA gene, group IC1 intron. ACCESSION AY571898 VERSION AY571898.1 GI:50299452 KEYWORDS . SOURCE Hildenbrandia rubra ORGANISM Hildenbrandia rubra Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 2 (bases 1 to 513) AUTHORS Muller,K.M., Ellenor,D.W., Sherwood,A.R., Sheath,R.G., Cannone,J.J. and Gutell,R.R. TITLE Direct Submission JOURNAL Submitted (10-MAR-2004) Biology, University of Waterloo, 200 University Ave West, Waterloo, ON N2L 3G1, Canada MEDLINE NONE FEATURES Location/Qualifiers source 1..513 /organism="Hildenbrandia rubra" /mol_type="genomic DNA" /strain="AK" /db_xref="taxon:31481" rRNA join(<1..8,511..>513) /product="small subunit ribosomal RNA" intron 9..510 /note="group IC1 intron" ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~aaca aggU||uuu( 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- --)|---|[a u(ccu)---- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ------au]| ---------- -------g|g aa|Gccuu-- |----|UGCA 661 ---------- --gccc-(ga ugaa)-gggu ---------- gggcg-c--- ucgcgacuag 721 au-------- ----aaau-a augacgaa-- -------ugc cugaaa---- ---------- 781 ---------- ---UGCA|A- |GCG-GC--- ---------- --ggaacauc u(cuuuua)g 841 ggug-----u uug------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 -----G-CCG C|-GA|UCUU -CUC|AAAU| UG-CGGG|AA AA|gugc|-- ---UcaaaUU 1141 GG|CCGu-aA AGAC-ACCG- ---------- ---------- ---------- C--G-GCU-C 1201 UU-GUG-(ga caa-)CAC-A G-A-G--UG- C|agca|GG- C-Gggg(uag ca--)c-cc- 1261 U-G-CU|GGA UGGUAACAG- AUCU-UuC-G G|Aca---|- ---------- --(cgg--)- 1321 ---------- ----|-GCC| -UAA|UC-CG CA|GCC-|AA g|CUCC---- ----(----- 1381 ---------- ---------- )|G|UA---- |gcgcauu-- ---------( uuuguu---- 1441 ---------- ----)|---- -------agu -g-c-gu|c| ---------- -G-GAG|-A| 1501 AGGU|-UCA| CAGACUG|-U AA|GGGAA-G G|G|GUUcgc ac-------( uugu------ 1561 ---------- ---------- ---------- ---------- ---)------ -gugcgGGCU 1621 |UAAGAGA|C AGUCG|-|GU -|cc-|cucu gu--(GAGA- ----)---gc agag|---|u 1681 uccgggu--- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---u ugaggaa|gg ugc-gccg(- 1801 ccgacaaa-- )ugggccacc |-|agaga-g |-----cgcc uggag|---- |agucg---- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- (uguguuuug cggguguuug cggauaacuc 1981 gcgcgcguga u--------- ---------- ----uggcu| -|-------- -uuucuga(a 2041 cggaa----- ---------- ---------- --)ucaa--- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -aaa------ ---------- -------|AU 2221 |G||uuc~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS AY571899 DEFINITION Hildenbrandia rubra strain NF small subunit ribosomal RNA gene, group IC1 intron. ACCESSION AY571899 VERSION AY571899.1 GI:50299453 KEYWORDS . SOURCE Hildenbrandia rubra ORGANISM Hildenbrandia rubra Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 2 (bases 1 to 505) AUTHORS Muller,K.M., Ellenor,D.W., Sherwood,A.R., Sheath,R.G., Cannone,J.J. and Gutell,R.R. TITLE Direct Submission JOURNAL Submitted (10-MAR-2004) Biology, University of Waterloo, 200 University Ave West, Waterloo, ON N2L 3G1, Canada MEDLINE NONE FEATURES Location/Qualifiers source 1..505 /organism="Hildenbrandia rubra" /mol_type="genomic DNA" /strain="NF" /db_xref="taxon:31481" gene <1..>505 /gene="small subunit ribosomal RNA" intron <1..>505 /gene="small subunit ribosomal RNA" /note="group IC1 intron" ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~aaca aggU||uuu( 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- --)|---|[a u(ccu)---- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ------au]| ---------- -------g|g aa|Gccuu-- |----|UGCA 661 ---------- --gccc-(ga ugaa)-gggu ---------- gggcg-c--- ucgcgacuag 721 au-------- ----aaau-a augacgaa-- -------ugc cugaaa---- ---------- 781 ---------- ---UGCA|A- |GCG-GC--- ---------- --ggaacauc u(cuuuua)g 841 ggug-----u uug------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 -----G-CCG C|-GA|UCUU -CUC|AAAU| UG-CGGG|AA AA|gugc|-- ---UcaaaUU 1141 GG|CCGu-aA AGAC-ACCG- ---------- ---------- ---------- C--G-GCU-C 1201 UU-GUG-(ga caa-)CAC-A G-A-G--UG- C|agca|GG- C-Gggg(uag ca--)c-cc- 1261 U-G-CU|GGA UGGUAACAG- AUCU-UuC-G G|Aca---|- ---------- --(cgg--)- 1321 ---------- ----|-GCC| -UAA|UC-CG CA|GCC-|AA g|CUCC---- ----(----- 1381 ---------- ---------- )|G|UA---- |gcgcauu-- ---------( uuuguu---- 1441 ---------- ----)|---- -------agu -g-c-gu|c| ---------- -G-GAG|-A| 1501 AGGU|-UCA| CAGACUG|-U AA|GGGAA-G G|G|GUUcgc ac-------( uugu------ 1561 ---------- ---------- ---------- ---------- ---)------ -gugcgGGCU 1621 |UAAGAGA|C AGUCG|-|GU -|cc-|cucu gu--(GAGA- ----)---gc agag|---|u 1681 uccgggu--- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---u ugaggaa|gg ugc-gccg(- 1801 ccgacaaa-- )ugggccacc |-|agaga-g |-----cgcc uggag|---- |agucg---- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- (uguguuuug cggguguuug cggauaacuc 1981 gcgcgcguga u--------- ---------- ----uggcu| -|-------- -uuucuga(a 2041 cggaa----- ---------- ---------- --)ucaa--- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -a~~~~~~~~ ~~~~~~~~~~ ~~~~~~~|~~ 2221 |~||~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS AF076995 DEFINITION Hildenbrandia rubra small subunit ribosomal RNA gene, complete sequence. ACCESSION AF076995 NID g3598963 VERSION NONE KEYWORDS . SOURCE Hildenbrandia rubra. ORGANISM Hildenbrandia rubra Eukaryota; Rhodophyta; Florideophyceae; Hildenbrandiales; Hildenbrandiaceae; Hildenbrandia. REFERENCE 2 (bases 1 to 2268) AUTHORS Saunders,G.W. and Bailey,J.C. TITLE Direct Submission JOURNAL Submitted (09-JUL-1998) Biology, University of New Brunswick, Fredericton, NB E3B 6E1, Canada MEDLINE NONE FEATURES Location/Qualifiers source 1..2268 /organism="Hildenbrandia rubra" /db_xref="taxon:31481" primer_bind 1..20 /note="Hild2" rRNA join(21..1724,2238..2241) /note="nuclear SSU rRNA" /product="small subunit ribosomal RNA" intron 1725..2237 /note="putative group I intron" primer_bind complement(2242..2268) /note="G07" BASE COUNT 577 a 481 c 658 g 551 t 1 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ aggaaggaga agucguaaca aggU||uuc( 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- --)--ac|[a u(uga)---- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- )--------- 601 ---------- ------au]| ---------- -----acg|g aa|Gccuu-- |----|UGCA 661 ---------- --gccc-(ga uaa-)-gggu ---------- gggcg-c--- ucgcgacuuu 721 uau------- ---aucauau aunaaaauaa ugacagcagc cugaaa---- ---------- 781 ---------- ---UGCA|A- |GCG-GC--- ---------- --(gcucaua )--------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 -----G-CCG C|-AA|CUUU -CUC|AUAU| UG-CGGG|AA -A|gugc|-- ---Ucaaa-U 1141 gc|cga--cA AGAC-ACCG- ---------- ---------- ---------- C--G-GCU-C 1201 AU-GUG-(ga uaa-)CAC-A G-A-G--UG- C|agca|GG- U--agg(uga ug--)cucu- 1261 A-A-CU|GAG UGGUAAUAG- cucu-u-u-c g|gau---|- ---------- --(augu-)- 1321 ---------- ----|-GCC| -UAA|UC-CG CA|GCC-|AA g|CUCC---- ----(----- 1381 ---------- ---------- )|G|UA---- |gcacacgcc gcg------( ucg------- 1441 ---------- ----)|---- ---cgcgcgc -g-u-gc|c| ---------- -G-GAA|-A| 1501 AGGU|-UCA| CAGACUG|-U AA|GGGAA-G G|G|GUCu-- ---------( acgcacacga 1561 aaacaug(aa aaa)caugaa gauuguuugu gcgcgg---- ---)------ -----gGGCU 1621 |UAAGAGA|C AGUCG|-|GU -|cc-|cucu gu--(GUGA- ----)---gc agag|---|u 1681 ucugggu--- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|uuuu agaggaa|gg cgc-gcca(- 1801 cc-u-aaa-- )uaggccgcc |-|ggaga-g |-----cgcc cagag|---- |aauca---- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- (ugugcuaag cggcauu--- ---------- 1981 ---------- ---------- ---------- ----ugauu| -|-------- ----gguc(g 2041 agaaca---- ---------- ---------- --)gaaa--- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- -caaaa---- ---------- -------|ug 2221 |U||uuccgu aggugaaccu gcagaaggau caagcu~~~~ ~~~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS AF101826 DEFINITION Bensingtonia yamatoana 18S ribosomal RNA gene, partial sequence. ACCESSION AF101826 NID g5453123 VERSION AF101826.1 GI:5453123 KEYWORDS . SOURCE Bensingtonia yamatoana. ORGANISM Bensingtonia yamatoana Eukaryota; Fungi; Basidiomycota; Urediniomycetes; Sporidiobolaceae; mitosporic Sporidiobolaceae; Bensingtonia. REFERENCE 2 (bases 1 to 2623) AUTHORS Bai,F.Y., Takashima,M. and Nakase,T. TITLE Direct Submission JOURNAL Submitted (27-OCT-1998) Department of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Zhong-Guan-Cun, Beijing 100080, P. R. China MEDLINE NONE FEATURES Location/Qualifiers source 1..2623 /organism="Bensingtonia yamatoana" /strain="AS 2.1973" /db_xref="taxon:4996" /country="China: Yunnan" rRNA <1..>2623 /product="18S ribosomal RNA" BASE COUNT 706 a 526 c 683 g 700 t 8 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~auuuag aggaaguaaa agucguaaca aggU||uuc( 61 -cguagaaag uacgaacgaa uuuaaugauu cuucugcggu ugaaacuuau c--------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- --------|g aa|Gccuu-- |----|AGUA 661 ---------- --gccu-(ga aa--)-gggu ---------- gcuuug---- -(cgcgacua 721 uaa------- ---acaauga ---------- )cgaagcuua aa-------- ---------- 781 ---------- ---UGCU|A- |GUG-AA--- ga-------- --caguguuc gcacugaaua 841 a--------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 -uc--U-Uwr m|AAA|mACC -AUC|GAAU| Us-CGGG|GA CG|s-CC|-- ---Uu---AG 1141 AG|CUU---C ACGU-ACGG- ---------- ---------- ---------- C--C-AAU-C 1201 -G-UUC-(GA AA--)GGAUU G-A-UU-CG- G|ca--|UC- A-GGU-(yaa ug--)--GC- 1261 C-UCGA|GUA UCGUAAUAA- CCGU-G-A-A G|auu---|- ---------- --(-----)- 1321 ---------- ------GGG| -UAA|UC-CG CA|GCC-|AA -|GUGC---- ----(----- 1381 ---------- ---------- )|U|AA---- |acaagua-- ---------( uugguaaacu 1441 c--------- ----)|---- -------uac -u-u-gc|A| U--------- -G-CUA|-A| 1501 UGGU|-UCA| CAGACUA|-A GU|GAUGG-U U|G|GGGaga u--------( gucua----- 1561 ---------- ---------- ---------- ---------- ---)------ --gucuCCCU 1621 |UAAGAwA|U AGUCG|-|GG -|---|cacc ucgg(GAAA- ----)-ccuu ggug|g--|- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---- -------|-- ---------- 1801 ---------- ---------- |-~~~~~~-~ |----~~~~~ ~~~~~|---~ |~~~~~~~~~ 1861 ~~~~~~---- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1981 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| ~|~~~~~~~~ ~~~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~|~~ 2221 |~||~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS AB045701 DEFINITION Tilletiopsis flava gene for 18S rRNA, partial sequence. ACCESSION AB045703 VERSION AB045703.1 GI:14626070 KEYWORDS . SOURCE Tilletiopsis flava (strain:JCM 10219) DNA. ORGANISM Tilletiopsis flava Eukaryota; Fungi; Basidiomycota; Ustilaginomycetes; Exobasidiomycetidae; Georgefischeriales; Tilletiariaceae; mitosporic Tilletiariaceae. REFERENCE 2 (bases 1 to 2842) AUTHORS Takashima,M. TITLE Direct Submission JOURNAL Submitted (06-JUL-2000) Masako Takashima, RIKEN (The Institute of Physical and Chemical Research), Japan Collection of Microorganisms; 2-1 Hirosawa, Wako, Saitama 351-0198, Japan (E-mail:masako@jcm.riken.go.jp, Tel:81-48-467-9560, Fax:81-48-462-4617) MEDLINE NONE FEATURES Location/Qualifiers source 1..2842 /organism="Tilletiopsis flava" /strain="JCM 10219" /db_xref="taxon:58914" rRNA join(<1..503,836..1703,2038..2376,2812..2842) /product="18S ribosomal RNA" intron 504..835 /note="group I intron" intron 1704..2037 /note="group I intron" gene 2377..2811 /gene="group I intron" intron 2377..2811 /gene="group I intron" BASE COUNT 724 a 619 c 786 g 713 t ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~g aggaaguaca agucauaaca aggU||uuc( 61 -ugcagaaca agucgaagau caguaaugau uccuucugca gacagcacuu gcu------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------g aa|Gccuu-- |----|AGCU 661 ---------- --gc-cc(ga aag-)ggugc ---------- gugccgugac uauaaaaaau 721 ggca------ ---------- ---------- -cauugcuua aa-------- ---------- 781 ---------- ---AGCU|A- |GUC-au--- uc-------- --cucg---- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 -ga--a-uGG C|-AA|CACU -GUC|AAAU| UG-CGGG|GA AA|C-CC|-- ---Uu---AG 1141 AG|CUC---A GACU-ACGG- ---------- ---------- ---------- C--G-GCC-U 1201 -U-CUC-(GA AA--)GAG-U U-G-GUGCA- G|ca--|GC- A-GGU-(uaa ug--)--GC- 1261 C-UCGC|GGA UCGUAACAA- CGUC-U-G-A G|auu---|- ---------- --(-----)- 1321 ---------- ------GGG| -UAA|UC-UG CA|GCC-|AA g|cgcuu--- ----(----- 1381 ---------- ---------- -|-|-C---- |GUcuugc-- ---------( cuaguu---- 1441 ---------- ----)|---- --------gc aa-guAC|a| u--------- ---gcg|ug| 1501 cUGU|-UCA| CAGGCCA|-A AU|GGUAG-U G|G|GUGgac cc-------( uccu------ 1561 ---------- ---------- ---------- ---------- ---)------ -ggaucUGCU 1621 |UAAGAUA|U GGUCG|-|GU -|c--|ccuc ugc-(GAAA- ----)--gca gggg|---|- 1681 -ugaguuguc uguugugucu gac(gaaa)g ucauu-cacg cugaaguacg aa-------- 1741 ---------- ---------- ---------- -----|---- -------|-- ---------- 1801 ---------- ---------- |--------- |--------- -----|---- |--------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------| -|-------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- -------|AC 2221 |G||uucugu aggugaaccu gcagaaggau cauua~~~~~ ~~~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS AF065831 DEFINITION Venturia inaequalis strain 685BF 18S ribosomal RNA and 5.8S ribosomal RNA genes, partial sequence. ACCESSION AF065831 NID g4106758 VERSION NONE KEYWORDS . SOURCE Venturia inaequalis. ORGANISM Venturia inaequalis Eukaryota; Fungi; Ascomycota; Euascomycetes; Loculoascomycetes; Dothideales; Venturiaceae; Venturia. REFERENCE 2 (bases 1 to 660) AUTHORS Schnabel,G. and Jones,A.L. TITLE Direct Submission JOURNAL Submitted (18-MAY-1998) Botany and Plant Pathology, Michigan State University, 103 Pesticide Research Center, East Lansing, MI 48824-1312, USA MEDLINE NONE FEATURES Location/Qualifiers source 1..660 /organism="Venturia inaequalis" /strain="685BF" /db_xref="taxon:5025" rRNA join(<1..37,426..456) /product="18S ribosomal RNA" intron 38..425 /note="group I" misc_RNA 457..610 /product="internal transcribed spacer" rRNA 611..>660 /product="5.8S ribosomal RNA" BASE COUNT 149 a 200 c 196 g 112 t 3 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~cuu ggucauuuag aggaacuaaa agucguaaca aggU||uuc( 61 -cgangaaca gugaucccuc ugcgagacgc uuacc----- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------g aa|Gccuu-- |----|UGCA 661 gc-------- ----ccc(gc aa--)ggggu gugcccgccg cgacuggaaa uaaugguugg 721 guca------ ---------- ---------- ---------- ---------- ---------- 781 ---------- ---UGCA|G- |GUC-GG--- cgcc------ --cccg---- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------g 1081 gcg--c-cgg c|-GA|CACU -UUC|GAAU| UG-CGGG|GA CG|U-CC|-- ---U------ 1141 cc|GUCG--A CCCU-ACCA- ---------- ---------- ---------- A--A-CCaGG 1201 -C-CGG-(AC AA--)CCG-G C-CAUG-UG- G|----|CC- U-CUGC(uan cg--)G-CA- 1261 G-A-NG|GGA UGGUAACAA- CGGGCUCG-A C|GA----|- ---------- --(-----)- 1321 ---------- ------GGG| -CAA|UC-CG CA|GCC-|AA c|UCCC---- ----(----- 1381 ---------- ---------- )|-|------ |-gccggcc- ---------( ---------- 1441 ---------- ----)|---- ---------- -------|-| ---------- -G-GGA|AG| 1501 GGGU|-UCA| CAGACUA|-A GU|GGAAG-U G|G|GCGggg g--------( gcaa------ 1561 ---------- ---------- ---------- ---------- ---)------ --ccccCGCU 1621 |UAAGAUA|U AGUCG|-|GG -|c--|ccuc ugg-(GAGA- ----)--cca gagg|aac|c 1681 cccg------ ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---- ---c---|gu ugc-----(- 1801 cgcc------ )----gcaac |u|------- |--------- cgggg|---- |--------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------| -|-------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---|-cacca aa-----|CC 2221 |G||uuccgu aggugaaccu gcggaaggau cauua----- ---------- ---------| 2281 |||| // LOCUS CG155ITS DEFINITION C.geophilum 155 partial rRNA genes and internal transcribed spacers 1 and 2. ACCESSION Z48521 NID g1185091 VERSION Z48521.1 GI:1185091 KEYWORDS internal transcribed spacer; ITS1; ITS2; ribosomal RNA; rRNA gene. SOURCE Cenococcum geophilum. ORGANISM Cenococcum geophilum Eukaryota; Fungi; Ascomycota; Euascomycetes; Loculoascomycetes; mitosporic Loculoascomycetes; Cenococcum. REFERENCE 2 (bases 1 to 1026) AUTHORS Shinohara,M.L. TITLE Direct Submission JOURNAL Submitted (27-FEB-1995) Mari L Shinohara, Biochemistry, Dartmouth Medical School, 7200 Vail Building, Hanover, NH, 03755-3844, U.S.A MEDLINE NONE FEATURES Location/Qualifiers source 1..1026 /organism="Cenococcum geophilum" /isolate="155" /db_xref="taxon:5570" intron 1..507 /note="Group I intron, CgSSU" rRNA <508..>536 /gene="SSU rRNA" /note="interrupted by CgSSU" gene 508..536 /gene="SSU rRNA" misc_feature 537..626 /note="internal transcribed spacer 1" /label=ITS1 rRNA 627..827 /gene="5.8S rRNA" gene 627..827 /gene="5.8S rRNA" misc_feature 828..966 /note="internal transcribed spacer 2" /label=ITS2 rRNA <967..>1026 /gene="LSU rRNA" gene 967..1026 /gene="LSU rRNA" BASE COUNT 255 a 246 c 278 g 246 t 1 other ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~ca aggU||uu-( 61 -ccguagaac aagucuugca ggaaugauuc cuugcgcagu guacacuugu a--------- 121 ---------- ---------- --)------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- --------|g aa|Gccuu-- |----|UGCA 661 ---------- --gc-cc-gc caa--gu--- ---------- agaucuaggc gacuuuaaau 721 aauuucuagg aucgcua--- ---------- ---------- ---------- ---------- 781 ---------- ---UGCC|A- |GUC-GgC-- Cc-------- --acgcaugu gu-------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 --G--C--GG C|-GA|CACU -UUC|GAAU| UGACGGG|GA UA|C-CC|-- ---U----AA 1141 AG|CCU---G UCGC-ACCA- ---------- ---------- ---------- A--C-UCU-A 1201 uG-UGG-(GA AA--)CCG-C U-A-GA-GGG G|----|CC- C-GUGC(uaa cu--)A-CA- 1261 C-G-GG|--- UGGUAACAG- ACGA-C-AuG G|auaccu|c cacgcu---- --(--uuu)g 1321 guguga--ua cuau---GG| -CAA|UC-CG CA|GCG-|AA g|CCUC---- ----(----- 1381 ---------- ---------- )|u|AA---- |guccgg--- ---------( ccg------- 1441 ---------- ----)|---- --------cc -g-g-au|a| u--------- -G-AGG|-A| 1501 ACGU|-UCA| CAGACUA|-A GU|GGAAG-U G|G|GUGGa- ---------( cguucgccgc 1561 ---------- ---------- ---------- ---------- ---)------ ----uCUGCU 1621 |UAAGAUA|U AGUCG|-|GG -|---|ccu- uugg(GAAA- ----)-cuaa gggg|---|g 1681 ugaguacacu gcucgaaauu caaacuugaa ggugucucgg auggcgccuu guguuagaau 1741 uugagacugu caacugccuc gugguuugac agcuc|---- -------|-- ---------- 1801 ---------- ---------- |--------- |--------- -----|---- |--------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------| -|-------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- -------uua aa-----|AC 2221 |G||uuccgu aggugaac-u gcggaaggau cauuacagaa aguaaagcgg aucaaac--| 2281 |||| // LOCUS ACU51945 DEFINITION Arthrobotrys cladodes isolate CCRC 32697 (=CBS 433.81) internal transcribed spacer 1, 5.8S ribosomal RNA gene; and internal transcribed spacer 2, complete sequence. ACCESSION U51945 NID g2951986 VERSION U51945.1 GI:2951986 KEYWORDS . SOURCE Arthrobotrys cladodes. ORGANISM Arthrobotrys cladodes Eukaryota; Fungi; Ascomycota; anamorphic Ascomycota; Arthrobotrys. REFERENCE 2 (bases 1 to 995) AUTHORS Tzean,S. TITLE Direct Submission JOURNAL Submitted (21-MAR-1996) Shean-shong Tzean, National Taiwan University, Plant Pathology and Entomology, 1, Roosevelt Rd. Sec. 4, Taipei, Taiwan 107, Republic of China MEDLINE NONE FEATURES Location/Qualifiers source 1..995 /organism="Arthrobotrys cladodes" /isolate="CCRC 32697 (=CBS 433.81)" /db_xref="taxon:47294" /tissue_type="mycelium" intron 16..409 misc_RNA 439..631 /note="ITS1" /product="internal transcribed spacer 1" rRNA 632..787 /product="5.8S ribosomal RNA" misc_RNA 788..956 /note="ITS2" /product="internal transcribed spacer 2" BASE COUNT 262 a 254 c 248 g 231 t ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~gucguaaca aggU||uu-( 61 -gaaguuugu ucccuuccac aggugacgcu cacgag---- ---------- ---------- 121 ---------- ---------- --)------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- --------|- aa|Gccuu-- |----|UGUg 661 a--------- ---cccc(gc aa--)gggg- ---------- uacccgccgc gacuguaaag 721 aauggaaugu ggguauuaaa ---------- ---------- ---------- ---------- 781 ---------- --ucGCA|A- |GUC-AG--- C--------- --cgcc---- ---------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 --G--C-UGG C|-AA|CACU -UUC|GAAU| UG-CGGG|AA CA|C-CC|-- ---U----AA 1141 AG|ccca--c cucU-ACCA- ---------- ---------- ---------- A--C-CAGcC 1201 -U--GA-(GA AA--)UCc-A G-C-UG-GG- G|----|CC- C-GUGU(uaa ca--)G-CA- 1261 C-G-GG|aaa uGGUCAUAA- ugag-gug-g g|auag--|g ucagcc---- --(uuucc)g 1321 guuggcauc- --au--GGA| -CAA|UC-CG CA|GCC-|AA g|UCCC---- ----(----- 1381 ---------- ---------- )|U|AA---- |ggucc---- ---------( agcug----- 1441 ---------- ----)|---- ---------g -g-g-cu|a| c--------- -G-GGA|-A| 1501 AGGU|-UCA| CAGACUA|-G GU|GGAAG-U G|G|GUUggu ---------( ucagc----- 1561 ---------- ---------- ---------- ---------- ---)------ ---accAACU 1621 |UAAGAUA|U AGUCG|-|GG -|---|cucu gcgc(GAAA- ----)-gcgg aggg|---|g 1681 agu------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---- -------|-- ---------- 1801 ---------- ---------- |--------- |--------- -----|---- |--------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------| -|-------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ---------- ----ca-|CU 2221 |G||uuccgu aggugaaccu gcggaaggau cauua~~~~~ ~~~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS AF197122 DEFINITION Metarhizium anisopliae var. anisopliae strain 33 28S ribosomal RNA gene, group-IB intron. ACCESSION AF197122 VERSION AF197122.1 GI:9081973 KEYWORDS . SOURCE Metarhizium anisopliae var. anisopliae. ORGANISM Metarhizium anisopliae var. anisopliae Eukaryota; Fungi; Ascomycota; anamorphic Ascomycota; Metarhizium. REFERENCE 2 (bases 1 to 436) AUTHORS Mavridou,A. and Typas,M.A. TITLE Direct Submission JOURNAL Submitted (21-OCT-1999) Genetics & Biotechnology, Faculty of Biology, University of Athens, Panepistemiopolis, Athens 15701, Greece MEDLINE NONE FEATURES Location/Qualifiers source 1..436 /organism="Metarhizium anisopliae var. anisopliae" /strain="33" /variety="anisopliae" /db_xref="taxon:92636" intron <1..>436 /note="33-int1; group-IB intron in 28S ribosomal RNA gene complex" BASE COUNT 111 a 110 c 128 g 87 t ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~aacuau gacU||c--( 61 -aacguucug agggauguau auuucacagc gggguuuggc aacuaaa--- ---------- 121 ---------- cuucgaga-- --)------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- --------|- -g|Gguca-- |----|AGUA 661 acgu------ ---------- ---------- ---------( aaaag----- ---------- 721 ---------- ---------- ---------- ---------- ---------) ---------- 781 --------gc g-UuGCU|A- |GUG-GG--- ---------- --cagugcug accucuggac 841 cggc-----g auccgcgacg agagacgcc- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 -----C-CCG C|-GA|CAUC -AUC|AAAU| UG-CGGG|GA CU|C-CC|-- ---U----AA 1141 AG|CUGU--G UGCU-ACUA- ---------- ---------- ---------- A--G-CAG-G 1201 -U-GCC-(GA AA--)cg--A C-C-UG-UG- G|----|CCG G-GGU-(-aa ug--)--AC- 1261 C-UGGG|GUA UAGUAAAAA- CGCA-C-C-A G|A-----|u g--------- --(cc-a-)- 1321 ---------- caau|-GGG| -UGA|UC-CG CA|GCC-|AA -|GUCC---- ----(----- 1381 ---------- ---------- )|U|AA---- |ggcaacagg ccucuuccc( gcccgug--- 1441 ---------- ----)|gggg agaguguccc gc-g-cu|A| U--------- -G-GAU|-G| 1501 CAGU|-UCA| ACGACUA|-A AC|GGUGA-U G|G|GCUagc guaa-----( ugaaugcgu( 1561 ucu)gcacac uc-------- ---------- ---------- ---)-----u uacgccGGCU 1621 |UAAGAUA|U AGUCU|-|AC -|ucc|cacu cc--(GAAA- ----)---gg ag-g|---|g 1681 gua------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---- -------|-- ---------- 1801 ---------- ---------- |--------- |--------- -----|---- |--------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------| -|-------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- --------cu aa-----|aa 2221 |G||cucuua aggu~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS AB044641 DEFINITION Cordyceps prolifica gene for 26S rRNA, partial sequence. ACCESSION AB044640 VERSION AB044640.1 GI:15425655 KEYWORDS . SOURCE Cordyceps prolifica DNA. ORGANISM Cordyceps prolifica Eukaryota; Fungi; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreales; Clavicipitaceae; Cordyceps. REFERENCE 2 (bases 1 to 2549) AUTHORS Nikoh,N. and Fukatsu,T. TITLE Direct Submission JOURNAL Submitted (13-JUN-2000) Naruo Nikoh, National Institute of Bioscience and Human-Technology, Insect-Parasitic/Symbiotic Microorganisms Research Group; 1-1 Higashi, Tsukuba, Ibaraki 305-8566, Japan (E-mail:nikoh@nibh.go.jp, Tel:81-298-61-6087, Fax:81-298-61-6080) MEDLINE 21396391 FEATURES Location/Qualifiers source 1..2549 /organism="Cordyceps prolifica" /db_xref="taxon:94209" rRNA <1..>2549 /product="26S ribosomal RNA" BASE COUNT 573 a 703 c 805 g 468 t ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~gcgcggg uaaacggcgg gaguaacuau gacU||c--( 61 -aa----acu u----u---- ---------- ---------- ---------- ---------- 121 ---------- ----gaga-- --)------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- --------|- -g|Ggucg-- |----|AGCa 661 gcgu------ ---------- ---------- ---------( aagag----- ---------- 721 ---------- ---------- ---------- ---------- ---------) ---------- 781 --------gc gaCUGCU|A- |GUG-GA--- gg-------- --ccugaaag c--------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- ---------- 1021 ---------- ---------- ---------- ---------- ---------- ---------- 1081 -cc--U-CCG C|-GA|CACC -GUC|AAAU| UG-CGGG|AA GU|U-CC|-- ---U----AA 1141 AG|CCGU--G UGCU-ACCA- ---------- ---------- ---------- A--G-CGG-G 1201 -C-GCC-(GA AA--)GGU-G C-C-CG-UG- G|----|CCG G-GGU-(-aa ug--)--AC- 1261 C-UAGG|GUA CGGUAACAA- CGCA-C-C-G G|a-----|u g--------- --(cc-a-)- 1321 ---------- caau|-GGA| -UGA|UC-CG CA|GCC-|AA -|GUCC---- ----(----- 1381 ---------- ---------- )|U|AA---- |gcgggcgag cccugg---( gccaa----- 1441 ---------- ----)|---c cggggcgaga -cac-gu|A| C--------- -G-GAU|-G| 1501 CAGU|-UCA| ACGACUA|-A AU|GGUGG-U G|G|GUuccu g--------( gggcgagggc 1561 cggcgcaacc uacgcgaccc ggcccccccc cua------- ---)------ --uaggGGCU 1621 |UAAGAUA|U AGUCU|-|AG -|ccc|cccg c---(GAAA- ----)----g cggg|---|- 1681 ---------- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---- -------|-- ---------- 1801 ---------- ---------- |--------- |--------- -----|---- |--------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------| -|-------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- ----cgggag ug-----|AU 2221 |G||cucuua agguagccaa augccucguc aucuaauuag ug~~~~~~~~ ~~~~~~~~~| 2281 |||| // LOCUS AF197124 DEFINITION Metarhizium anisopliae var. anisopliae strain 33 28S ribosomal RNA gene, group-IB intron. ACCESSION AF197124 VERSION AF197124.1 GI:9081975 KEYWORDS . SOURCE Metarhizium anisopliae var. anisopliae. ORGANISM Metarhizium anisopliae var. anisopliae Eukaryota; Fungi; Ascomycota; anamorphic Ascomycota; Metarhizium. REFERENCE 2 (bases 1 to 412) AUTHORS Mavridou,A. and Typas,M.A. TITLE Direct Submission JOURNAL Submitted (21-OCT-1999) Genetics & Biotechnology, Faculty of Biology, University of Athens, Panepistemiopolis, Athens 15701, Greece MEDLINE NONE FEATURES Location/Qualifiers source 1..412 /organism="Metarhizium anisopliae var. anisopliae" /strain="33" /variety="anisopliae" /db_xref="taxon:92636" intron <1..>412 /note="33-int3; group-IB intron in 28S ribosomal RNA gene complex" BASE COUNT 101 a 106 c 128 g 77 t ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~agaaaa guuaccacag ggaU||aa-( 61 -acuguaaua ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- --)------- ---------- ---------- ---------- 181 ---------- ---------- ---------- ---------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- ---------- ---------- ---------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- --------|- uu|Guccc-- |----|AGGC 661 cgggu----- ---------- ---------- ---------( cucauca--- ---------- 721 ---------- ---------- ---------- ---------- ---------) ---------- 781 -------gcc cggGCCU|A- |GUC-U---g guccccccc- --gaauagca cug------- 841 ---------- ---------- ---------- ---------- ---------- ---------- 901 ---------- ---------- ---------- ---------- ---------- ---------- 961 ---------- ---------- ---------- ---------- ---------- -----g-gg- 1021 g--------- ---------- ---------- ---------- ---------- -------aga 1081 auu--c-AGG C|-GA|CACA -C-U|GGA-| UG-CGGG|GA AC|U-CU|-- ---Cgu--UA 1141 GG|CGU---U UGGU-ACCA- ---------- ---------- ---------- C--C-CAG-C 1201 -A-GGA-(U- AAca)CCC-u g-c-ug-gu- u|----|cca a-ug--(aua cggg)---c- 1261 a-u-ca|--- -GGUAAAAA- UUCA-A-A-C G|auag--|- ---------- --(-----)- 1321 ---------- ------AGC| -CAA|UC-CG -A|GCC-|ag -|UUGGC--- ----(ug--- 1381 ---------- ---------- )|-|------ |cccca---- ---------( uggauu---- 1441 ---------- ----)|---- ---------u -g-g-gg|g| u--------G -C-UGG|-C| 1501 CGGU|-UCA| ACGCUCG|-C UA|AGGUG-U G|G|GUUgcg ggg------( agaaaaaaaa 1561 aagaaaaaua cagagggaau c--------- ---------- ---)------ ccccgcGGCU 1621 |UAAGGUA|C G---U|A|CG -|cc-|cauc c---(GAGA- ----)----g gaug|---|a 1681 caucgc---- ---------- ---------- ---------- ---------- ---------- 1741 ---------- ---------- ---------- -----|---- ua-----|gc ag------(- 1801 ugc------- )-----cugc |--cgaga-a |-------gc ggugu|-gac |gcccug--- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- (gcuucaggc cgggg----- ---------- 1981 ---------- ---------- ---------- ---cagggu| -|-------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- ---------- --------au ua-----|CG 2221 |G||aacugg cuuguggcgg ccaagcg~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~| 2281 |||| //