Last modified on 10 September 2001.
Literature Reference:
Bhattacharya D., Cannone J.J., and Gutell R.R. (2001)
Group I Intron Lateral Transfer Between Red and Brown Algal Ribosomal RNA.
Current Genetics. 40:82-90.
| Manuscript Figures |
Figure 1: Analysis of intron secondary structures (Composite)
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(PDF) | |
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| Figure 2: Plots of uncorrected pairwise substitutions vs. values corrected for multiple hits for the group I intron data set from Figure 3. | (PDF) | ||
| Figure 3: Phylogeny of IC1 and IE introns interrupting the nuclear SSU rRNA of different eukaryotes. | (PDF) | ||
| Figure 4: Phylogeny of selected red algae (Rhodophytes) and stramenopiles based on SSU rRNA sequence comparisons. | (PDF) | ||
| Manuscript Tables |
Table 1: List of organisms containing the inserted helix in the P5b region of the IC1 516 introns. | (HTML) | |
| Table 2: Base-pair frequencies for the inserted helix in P5b found in the red and brown algae. | (HTML) | ||
| Additional Tables |
Table: List of 61 Acanthamoebidae SSU rRNA sequences. | (HTML) | |
| Table: List of 373 stramenopile SSU rRNA sequences. | (HTML) | ||
| Alignment Files |
18S rRNA | Alignment in AE2 (Macke) Format (file size: 4.6 MB). | (AE2) |
| Alignment in GenBank Format (file size: 3.7 MB). | (GB) | ||
| List of Sequences in the Alignment. | (HTML) | ||
| Group I Introns | Alignment in AE2 (Macke) Format (file size: x.x MB). | (AE2) | |
| Alignment in GenBank Format (file size: x.x MB). | (GB) | ||
| List of Sequences in the Alignment. | (HTML) | ||
| Intron Secondary Structure Diagrams |
Acanthamoeba griffini (U02540 | U07412) | PS | PDF | |
| Acanthamoeba griffini (S81337) | PS | PDF | ||
| Aureoumbra lagunensis (U40258) | PS | PDF | ||
| Bangia atropurpurea (D88387) | PS | PDF | ||
| Bangia fuscopurpurea (AF342745) | PS | PDF | ||
| Porphyra leucosticta (AF342746) | PS | PDF | ||
| Tetrahymena thermophila (J01235 | V01416) | PS | PDF | ||
