16S rRNA Model Base Pair Collective Scoring Data for Helical Element 1047
| Base Pair (1047:1210)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
26 |
74 |
10 |
0.20 |
0.10 |
0.00 |
0.10 |
0.83 |
1.00 |
1.83 |
1.21 |
0.00 |
0.80 |
6840 |
| 3 |
8 |
43 |
0 |
0.00 |
0.06 |
0.00 |
0.06 |
0.80 |
1.00 |
1.88 |
1.16 |
0.01 |
0.76 |
5532 |
| B |
2 |
40 |
0 |
0.00 |
0.07 |
0.00 |
0.07 |
0.95 |
1.00 |
1.94 |
1.58 |
0.01 |
0.73 |
4341 |
| A |
0 |
0 |
0 |
0.00 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
1.96 |
1.96 |
0.00 |
0.73 |
193 |
| C |
0 |
3 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.93 |
1.00 |
2.00 |
1.59 |
0.01 |
0.89 |
163 |
| E |
6 |
3 |
0 |
0.00 |
0.01 |
0.00 |
0.01 |
0.09 |
1.00 |
1.68 |
1.74 |
0.00 |
0.94 |
994 |
| M |
18 |
28 |
10 |
0.43 |
0.61 |
0.96 |
1.58 |
0.96 |
1.00 |
1.65 |
1.52 |
0.00 |
0.99 |
1150 |
| |
| Base Pair (1048:1209)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
46 |
41 |
16 |
0.37 |
0.86 |
0.98 |
1.83 |
0.98 |
1.00 |
1.18 |
1.19 |
0.00 |
0.81 |
6897 |
| 3 |
5 |
8 |
3 |
0.46 |
0.78 |
1.00 |
1.78 |
1.00 |
1.00 |
1.88 |
1.83 |
0.00 |
0.77 |
5588 |
| B |
4 |
8 |
3 |
0.50 |
0.79 |
1.00 |
1.79 |
1.00 |
1.00 |
1.87 |
1.80 |
0.00 |
0.74 |
4392 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
2.00 |
2.00 |
0.00 |
0.75 |
198 |
| C |
0 |
1 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.99 |
1.00 |
2.00 |
1.95 |
0.00 |
0.90 |
163 |
| E |
1 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
1.98 |
1.96 |
0.00 |
0.94 |
994 |
| M |
41 |
32 |
13 |
0.36 |
0.57 |
0.87 |
1.44 |
0.87 |
0.99 |
0.84 |
1.09 |
0.00 |
0.99 |
1151 |
| |
|
| Base Pair (1050:1208)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
17 |
21 |
7 |
0.37 |
0.93 |
0.99 |
1.91 |
0.99 |
0.99 |
1.32 |
1.26 |
0.00 |
0.79 |
6785 |
| 3 |
5 |
6 |
0 |
0.00 |
0.07 |
0.00 |
0.07 |
0.99 |
1.00 |
1.95 |
1.86 |
0.00 |
0.76 |
5475 |
| B |
5 |
5 |
0 |
0.00 |
0.03 |
0.00 |
0.03 |
0.99 |
0.99 |
1.96 |
1.88 |
0.00 |
0.73 |
4294 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
2.00 |
2.00 |
0.00 |
0.75 |
197 |
| C |
2 |
3 |
1 |
0.40 |
0.40 |
0.98 |
1.38 |
0.98 |
0.99 |
1.87 |
1.84 |
0.00 |
0.90 |
163 |
| E |
0 |
1 |
0 |
0.00 |
0.14 |
0.00 |
0.14 |
0.98 |
1.00 |
1.95 |
1.83 |
0.00 |
0.93 |
980 |
| M |
10 |
12 |
6 |
0.55 |
0.79 |
0.98 |
1.77 |
0.98 |
0.99 |
1.40 |
1.42 |
0.00 |
0.99 |
1152 |
| |
| Base Pair (1051:1207)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
48 |
48 |
23 |
0.48 |
0.94 |
0.97 |
1.92 |
0.97 |
0.99 |
0.48 |
0.55 |
0.00 |
0.80 |
6871 |
| 3 |
22 |
22 |
12 |
0.55 |
0.94 |
0.98 |
1.92 |
0.98 |
0.99 |
0.85 |
0.91 |
0.00 |
0.77 |
5561 |
| B |
21 |
19 |
11 |
0.55 |
0.95 |
0.97 |
1.92 |
0.97 |
0.99 |
0.85 |
0.92 |
0.00 |
0.74 |
4362 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.97 |
0.98 |
1.86 |
1.96 |
0.00 |
0.75 |
198 |
| C |
3 |
2 |
2 |
0.80 |
0.00 |
0.00 |
0.00 |
0.99 |
0.99 |
1.95 |
2.00 |
0.00 |
0.90 |
163 |
| E |
1 |
3 |
1 |
0.50 |
0.89 |
1.00 |
1.89 |
1.00 |
1.00 |
1.81 |
1.79 |
0.00 |
0.94 |
997 |
| M |
23 |
24 |
9 |
0.38 |
0.85 |
0.95 |
1.81 |
0.95 |
0.98 |
0.74 |
0.76 |
0.00 |
0.99 |
1152 |
| |
| Base Pair (1052:1206)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
20 |
13 |
0 |
0.00 |
0.68 |
0.99 |
1.67 |
0.01 |
0.97 |
1.78 |
1.75 |
0.00 |
0.79 |
6733 |
| 3 |
5 |
7 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.95 |
1.94 |
0.00 |
0.75 |
5423 |
| B |
5 |
6 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.96 |
1.95 |
0.00 |
0.72 |
4234 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.02 |
0.99 |
1.84 |
2.00 |
0.00 |
0.70 |
186 |
| C |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
2.00 |
1.95 |
0.00 |
0.90 |
163 |
| E |
0 |
1 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.97 |
1.94 |
0.00 |
0.94 |
999 |
| M |
15 |
6 |
0 |
0.00 |
0.77 |
0.96 |
1.73 |
0.04 |
0.84 |
1.36 |
1.23 |
0.00 |
0.99 |
1152 |
| |
| Base Pair (1053:1205)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
7 |
20 |
0 |
0.00 |
0.01 |
0.00 |
0.01 |
0.18 |
1.00 |
1.35 |
1.79 |
0.00 |
0.81 |
6891 |
| 3 |
2 |
13 |
0 |
0.00 |
0.01 |
0.00 |
0.01 |
0.03 |
1.00 |
1.95 |
1.77 |
0.00 |
0.78 |
5581 |
| B |
2 |
12 |
0 |
0.00 |
0.01 |
0.00 |
0.01 |
0.04 |
1.00 |
1.95 |
1.75 |
0.00 |
0.75 |
4383 |
| A |
0 |
1 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.01 |
1.00 |
1.96 |
1.92 |
0.00 |
0.75 |
197 |
| C |
0 |
1 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.01 |
1.00 |
2.00 |
1.95 |
0.00 |
0.90 |
163 |
| E |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.99 |
1.98 |
0.00 |
0.94 |
997 |
| M |
5 |
6 |
0 |
0.00 |
0.06 |
0.00 |
0.06 |
0.92 |
0.99 |
1.55 |
1.90 |
0.00 |
0.99 |
1152 |
| |
|
| Base Pair (1056:1204)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
20 |
12 |
7 |
0.44 |
0.84 |
0.97 |
1.82 |
0.97 |
0.97 |
1.31 |
1.36 |
0.00 |
0.81 |
6897 |
| 3 |
6 |
3 |
1 |
0.22 |
0.08 |
0.00 |
0.08 |
0.97 |
0.97 |
1.79 |
1.95 |
0.00 |
0.78 |
5588 |
| B |
6 |
3 |
1 |
0.22 |
0.08 |
0.00 |
0.08 |
0.97 |
0.97 |
1.76 |
1.95 |
0.00 |
0.75 |
4386 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
2.00 |
2.00 |
0.00 |
0.75 |
198 |
| C |
1 |
1 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.99 |
0.99 |
1.95 |
1.95 |
0.00 |
0.90 |
163 |
| E |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
1.99 |
1.98 |
0.00 |
0.95 |
1000 |
| M |
13 |
8 |
6 |
0.57 |
0.64 |
0.96 |
1.60 |
0.96 |
0.97 |
1.58 |
1.49 |
0.00 |
0.99 |
1151 |
| |
| Base Pair (1057:1203)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
11 |
43 |
4 |
0.15 |
0.47 |
0.82 |
1.29 |
0.82 |
0.97 |
1.32 |
0.64 |
0.00 |
0.80 |
6802 |
| 3 |
3 |
26 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.79 |
0.96 |
1.97 |
1.10 |
0.00 |
0.76 |
5492 |
| B |
2 |
15 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.99 |
1.00 |
1.98 |
1.88 |
0.00 |
0.73 |
4291 |
| A |
0 |
4 |
0 |
0.00 |
0.01 |
0.00 |
0.01 |
0.38 |
0.99 |
1.96 |
1.05 |
0.00 |
0.75 |
198 |
| C |
0 |
3 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.93 |
1.00 |
2.00 |
1.65 |
0.00 |
0.90 |
163 |
| E |
1 |
7 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.83 |
1.95 |
1.27 |
0.00 |
0.94 |
999 |
| M |
8 |
14 |
4 |
0.36 |
0.78 |
0.98 |
1.76 |
0.98 |
1.00 |
1.38 |
1.31 |
0.00 |
0.99 |
1152 |
| |
|
| Base Pair (1058:1199)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
15 |
12 |
2 |
0.15 |
0.03 |
0.00 |
0.03 |
0.01 |
0.97 |
1.71 |
1.91 |
0.00 |
0.81 |
6900 |
| 3 |
1 |
2 |
0 |
0.00 |
0.03 |
0.00 |
0.03 |
0.00 |
1.00 |
1.93 |
1.97 |
0.00 |
0.78 |
5594 |
| B |
1 |
2 |
0 |
0.00 |
0.04 |
0.00 |
0.04 |
0.00 |
1.00 |
1.94 |
1.98 |
0.00 |
0.75 |
4395 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
2.00 |
2.00 |
0.00 |
0.74 |
195 |
| C |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.93 |
2.00 |
0.01 |
0.88 |
161 |
| E |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.99 |
1.93 |
1.98 |
0.00 |
0.95 |
1000 |
| M |
14 |
10 |
2 |
0.17 |
0.03 |
0.00 |
0.03 |
0.08 |
0.84 |
1.10 |
1.71 |
0.00 |
0.99 |
1150 |
| |
| Base Pair (1059:1198)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
51 |
51 |
39 |
0.77 |
0.97 |
0.99 |
1.97 |
0.99 |
1.00 |
1.17 |
1.18 |
0.00 |
0.81 |
6911 |
| 3 |
38 |
38 |
29 |
0.76 |
0.98 |
0.99 |
1.97 |
0.99 |
1.00 |
1.10 |
1.11 |
0.00 |
0.78 |
5602 |
| B |
33 |
35 |
26 |
0.77 |
0.98 |
0.99 |
1.98 |
0.99 |
0.99 |
1.03 |
1.04 |
0.00 |
0.75 |
4398 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
2.00 |
2.00 |
0.00 |
0.75 |
198 |
| C |
2 |
3 |
2 |
0.80 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
1.77 |
1.81 |
0.01 |
0.89 |
163 |
| E |
5 |
3 |
3 |
0.75 |
0.53 |
0.99 |
1.52 |
0.99 |
1.00 |
1.83 |
1.89 |
0.00 |
0.95 |
1002 |
| M |
11 |
10 |
8 |
0.76 |
0.91 |
1.00 |
1.91 |
1.00 |
1.00 |
1.74 |
1.74 |
0.00 |
0.99 |
1151 |
| |
| Base Pair (1060:1197)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
24 |
24 |
18 |
0.75 |
0.99 |
1.00 |
1.99 |
1.00 |
1.00 |
1.04 |
1.06 |
0.00 |
0.80 |
6845 |
| 3 |
14 |
16 |
14 |
0.93 |
0.99 |
1.00 |
1.99 |
1.00 |
1.00 |
1.18 |
1.20 |
0.00 |
0.77 |
5535 |
| B |
11 |
14 |
12 |
0.96 |
0.92 |
1.00 |
1.92 |
1.00 |
1.00 |
1.80 |
1.81 |
0.00 |
0.74 |
4340 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
2.00 |
2.00 |
0.00 |
0.75 |
197 |
| C |
0 |
1 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.99 |
1.00 |
1.93 |
1.95 |
0.01 |
0.89 |
163 |
| E |
3 |
2 |
2 |
0.80 |
0.33 |
1.00 |
1.33 |
1.00 |
1.00 |
1.93 |
1.96 |
0.00 |
0.94 |
994 |
| M |
10 |
7 |
4 |
0.47 |
0.88 |
0.99 |
1.86 |
0.99 |
1.00 |
1.51 |
1.54 |
0.00 |
0.99 |
1152 |
| |
|
| Base Pair (1061:1195) (Tertiary)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
7 |
21 |
2 |
0.14 |
0.74 |
0.98 |
1.72 |
0.98 |
1.00 |
1.64 |
1.56 |
0.00 |
0.79 |
6774 |
| 3 |
2 |
16 |
1 |
0.11 |
0.10 |
0.00 |
0.10 |
0.97 |
1.00 |
1.95 |
1.79 |
0.00 |
0.76 |
5466 |
| B |
1 |
11 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.99 |
1.00 |
1.98 |
1.94 |
0.00 |
0.73 |
4267 |
| A |
1 |
2 |
1 |
0.67 |
0.00 |
0.00 |
0.00 |
0.44 |
1.00 |
1.62 |
1.01 |
0.00 |
0.74 |
197 |
| C |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
2.00 |
1.94 |
0.01 |
0.89 |
162 |
| E |
0 |
3 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.99 |
1.00 |
1.97 |
1.96 |
0.00 |
0.94 |
998 |
| M |
5 |
5 |
1 |
0.20 |
0.98 |
0.99 |
1.98 |
0.99 |
1.00 |
1.03 |
1.04 |
0.00 |
0.99 |
1151 |
| |
| Base Pair (1062:1194) (Tertiary)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
14 |
27 |
5 |
0.24 |
0.07 |
0.00 |
0.07 |
0.20 |
0.21 |
1.82 |
1.11 |
0.00 |
0.81 |
6909 |
| 3 |
7 |
8 |
3 |
0.40 |
0.09 |
0.00 |
0.09 |
0.19 |
0.21 |
1.83 |
1.11 |
0.00 |
0.78 |
5600 |
| B |
3 |
1 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
1.97 |
1.98 |
0.00 |
0.75 |
4400 |
| A |
1 |
1 |
0 |
0.00 |
0.01 |
0.00 |
0.01 |
0.47 |
0.99 |
1.04 |
1.55 |
0.00 |
0.75 |
198 |
| C |
0 |
3 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.01 |
0.01 |
2.00 |
1.78 |
0.00 |
0.90 |
163 |
| E |
3 |
6 |
3 |
0.67 |
0.75 |
0.99 |
1.74 |
0.99 |
1.00 |
1.77 |
1.76 |
0.00 |
0.94 |
998 |
| M |
7 |
16 |
2 |
0.17 |
0.00 |
0.00 |
0.00 |
0.23 |
0.24 |
1.81 |
1.12 |
0.00 |
0.99 |
1151 |
| |
| Base Pair (1063:1193)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
19 |
21 |
9 |
0.45 |
0.93 |
0.99 |
1.92 |
0.99 |
0.99 |
1.35 |
1.32 |
0.00 |
0.81 |
6907 |
| 3 |
6 |
9 |
4 |
0.53 |
0.98 |
1.00 |
1.98 |
1.00 |
1.00 |
1.31 |
1.31 |
0.00 |
0.78 |
5598 |
| B |
3 |
6 |
1 |
0.22 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
1.98 |
1.98 |
0.00 |
0.75 |
4397 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
2.00 |
2.00 |
0.00 |
0.75 |
198 |
| C |
2 |
1 |
1 |
0.67 |
0.50 |
0.99 |
1.49 |
0.99 |
1.00 |
1.91 |
1.95 |
0.00 |
0.90 |
163 |
| E |
3 |
3 |
3 |
1.00 |
0.33 |
1.00 |
1.33 |
1.00 |
1.00 |
1.98 |
1.96 |
0.00 |
0.95 |
999 |
| M |
11 |
11 |
4 |
0.36 |
0.64 |
0.98 |
1.62 |
0.95 |
0.95 |
1.61 |
1.58 |
0.00 |
0.99 |
1151 |
| |
| Base Pair (1064:1192)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
53 |
71 |
16 |
0.26 |
0.58 |
0.89 |
1.47 |
0.76 |
0.78 |
0.99 |
1.00 |
0.00 |
0.81 |
6914 |
| 3 |
9 |
32 |
6 |
0.29 |
0.82 |
0.96 |
1.78 |
0.80 |
0.82 |
1.23 |
1.21 |
0.00 |
0.78 |
5606 |
| B |
2 |
24 |
1 |
0.08 |
0.00 |
0.00 |
0.00 |
0.97 |
0.99 |
1.99 |
1.78 |
0.00 |
0.75 |
4404 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
2.00 |
2.00 |
0.00 |
0.75 |
198 |
| C |
1 |
8 |
1 |
0.22 |
0.06 |
0.00 |
0.06 |
0.90 |
0.96 |
1.95 |
1.40 |
0.00 |
0.90 |
163 |
| E |
7 |
8 |
5 |
0.67 |
0.44 |
0.94 |
1.38 |
0.02 |
0.05 |
1.45 |
1.45 |
0.00 |
0.95 |
1000 |
| M |
43 |
31 |
9 |
0.24 |
0.26 |
0.54 |
0.80 |
0.54 |
0.55 |
0.55 |
0.73 |
0.00 |
0.99 |
1150 |
| |
Last generated : Fri Jun 16 2000 (14 : 29)