16S rRNA Model Base Pair Collective Scoring Data for Helical Element 240
| Base Pair (240:286)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
125 |
130 |
111 |
0.87 |
0.97 |
0.99 |
1.96 |
0.99 |
1.00 |
0.58 |
0.59 |
0.00 |
0.84 |
7196 |
| 3 |
106 |
111 |
96 |
0.89 |
0.96 |
0.99 |
1.95 |
0.99 |
1.00 |
0.81 |
0.82 |
0.00 |
0.86 |
6203 |
| B |
93 |
99 |
87 |
0.91 |
0.97 |
0.99 |
1.96 |
0.99 |
0.99 |
0.66 |
0.66 |
0.00 |
0.84 |
4956 |
| A |
8 |
7 |
5 |
0.67 |
0.52 |
0.94 |
1.45 |
0.94 |
1.00 |
1.41 |
1.62 |
0.00 |
0.84 |
221 |
| C |
2 |
3 |
2 |
0.80 |
0.67 |
0.99 |
1.66 |
0.99 |
0.99 |
1.84 |
1.81 |
0.01 |
0.92 |
169 |
| E |
5 |
5 |
4 |
0.80 |
0.89 |
1.00 |
1.89 |
1.00 |
1.00 |
1.79 |
1.79 |
0.00 |
0.97 |
1026 |
| M |
17 |
16 |
13 |
0.79 |
0.95 |
0.99 |
1.94 |
0.99 |
1.00 |
0.78 |
0.76 |
0.00 |
0.68 |
832 |
| |
| Base Pair (241:285)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
174 |
165 |
145 |
0.85 |
0.92 |
0.95 |
1.87 |
0.95 |
1.00 |
0.17 |
0.17 |
0.00 |
0.84 |
7233 |
| 3 |
144 |
130 |
121 |
0.88 |
0.90 |
0.95 |
1.85 |
0.95 |
1.00 |
0.23 |
0.25 |
0.00 |
0.87 |
6240 |
| B |
128 |
117 |
111 |
0.91 |
0.94 |
0.96 |
1.90 |
0.96 |
0.99 |
0.15 |
0.12 |
0.00 |
0.85 |
4993 |
| A |
8 |
8 |
8 |
1.00 |
0.95 |
0.99 |
1.94 |
0.99 |
1.00 |
1.42 |
1.50 |
0.00 |
0.83 |
221 |
| C |
3 |
2 |
2 |
0.80 |
0.67 |
0.99 |
1.66 |
0.99 |
0.99 |
1.79 |
1.87 |
0.01 |
0.92 |
169 |
| E |
8 |
5 |
2 |
0.31 |
0.07 |
0.00 |
0.07 |
0.88 |
1.00 |
1.40 |
1.91 |
0.00 |
0.97 |
1026 |
| M |
27 |
33 |
22 |
0.73 |
0.71 |
0.97 |
1.68 |
0.97 |
1.00 |
1.19 |
1.11 |
0.00 |
0.68 |
832 |
| |
| Base Pair (242:284)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
149 |
129 |
82 |
0.59 |
0.53 |
0.71 |
1.24 |
0.67 |
0.99 |
0.42 |
0.56 |
0.00 |
0.84 |
7218 |
| 3 |
83 |
62 |
48 |
0.66 |
0.60 |
0.76 |
1.36 |
0.64 |
0.99 |
0.47 |
0.73 |
0.00 |
0.87 |
6225 |
| B |
72 |
53 |
44 |
0.70 |
0.46 |
0.72 |
1.18 |
0.76 |
0.99 |
0.47 |
0.68 |
0.00 |
0.85 |
4979 |
| A |
4 |
4 |
2 |
0.50 |
0.57 |
0.81 |
1.38 |
0.81 |
0.99 |
0.51 |
0.80 |
0.00 |
0.83 |
220 |
| C |
2 |
2 |
2 |
1.00 |
0.75 |
0.99 |
1.74 |
0.99 |
0.99 |
1.81 |
1.82 |
0.01 |
0.92 |
169 |
| E |
7 |
5 |
2 |
0.33 |
0.00 |
0.00 |
0.00 |
0.04 |
0.99 |
1.75 |
1.96 |
0.00 |
0.97 |
1026 |
| M |
64 |
65 |
32 |
0.50 |
0.64 |
0.81 |
1.45 |
0.81 |
0.99 |
0.44 |
0.33 |
0.00 |
0.68 |
832 |
| |
|
| Base Pair (245:283) (Tertiary)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
46 |
39 |
29 |
0.68 |
0.98 |
0.99 |
1.97 |
0.00 |
0.00 |
0.93 |
0.94 |
0.00 |
0.84 |
7222 |
| 3 |
29 |
31 |
26 |
0.87 |
0.99 |
1.00 |
1.99 |
0.00 |
0.00 |
1.03 |
1.02 |
0.00 |
0.87 |
6230 |
| B |
24 |
24 |
21 |
0.88 |
0.98 |
1.00 |
1.98 |
0.00 |
0.00 |
1.17 |
1.16 |
0.00 |
0.85 |
4985 |
| A |
2 |
3 |
2 |
0.80 |
0.99 |
0.99 |
1.99 |
0.00 |
0.00 |
1.01 |
1.01 |
0.00 |
0.84 |
221 |
| C |
1 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.01 |
1.95 |
1.95 |
0.00 |
0.93 |
170 |
| E |
3 |
4 |
3 |
0.86 |
0.75 |
1.00 |
1.75 |
0.00 |
0.00 |
1.94 |
1.94 |
0.00 |
0.97 |
1024 |
| M |
16 |
8 |
3 |
0.25 |
0.61 |
0.94 |
1.56 |
0.01 |
0.03 |
0.91 |
1.06 |
0.00 |
0.68 |
830 |
| |
|
| Base Pair (247:277)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
22 |
26 |
17 |
0.71 |
0.96 |
0.99 |
1.96 |
0.99 |
1.00 |
1.32 |
1.32 |
0.00 |
0.85 |
7251 |
| 3 |
11 |
14 |
10 |
0.80 |
0.96 |
0.99 |
1.96 |
0.99 |
1.00 |
1.44 |
1.43 |
0.00 |
0.87 |
6257 |
| B |
5 |
8 |
4 |
0.61 |
0.24 |
0.99 |
1.23 |
0.99 |
1.00 |
1.96 |
1.93 |
0.00 |
0.85 |
5011 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
2.00 |
2.00 |
0.00 |
0.84 |
221 |
| C |
1 |
2 |
0 |
0.00 |
0.20 |
0.00 |
0.20 |
0.98 |
1.00 |
1.95 |
1.81 |
0.00 |
0.93 |
170 |
| E |
6 |
6 |
6 |
1.00 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
1.06 |
1.06 |
0.00 |
0.97 |
1025 |
| M |
10 |
10 |
7 |
0.70 |
0.97 |
0.99 |
1.96 |
0.99 |
0.99 |
0.64 |
0.66 |
0.00 |
0.68 |
832 |
| |
| Base Pair (248:276)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
125 |
117 |
94 |
0.78 |
0.95 |
0.99 |
1.93 |
0.99 |
0.99 |
0.87 |
0.89 |
0.00 |
0.85 |
7247 |
| 3 |
111 |
104 |
82 |
0.76 |
0.91 |
0.98 |
1.90 |
0.98 |
0.99 |
1.10 |
1.12 |
0.00 |
0.87 |
6253 |
| B |
97 |
93 |
71 |
0.75 |
0.91 |
0.98 |
1.89 |
0.98 |
0.99 |
1.12 |
1.12 |
0.00 |
0.85 |
5006 |
| A |
4 |
4 |
4 |
1.00 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
1.69 |
1.69 |
0.00 |
0.84 |
223 |
| C |
5 |
3 |
3 |
0.75 |
0.62 |
0.98 |
1.61 |
0.98 |
1.00 |
1.73 |
1.81 |
0.00 |
0.93 |
170 |
| E |
10 |
7 |
7 |
0.82 |
0.65 |
0.98 |
1.63 |
0.98 |
1.00 |
1.67 |
1.74 |
0.00 |
0.97 |
1024 |
| M |
9 |
10 |
9 |
0.95 |
0.85 |
1.00 |
1.84 |
1.00 |
1.00 |
1.48 |
1.49 |
0.00 |
0.68 |
832 |
| |
| Base Pair (249:275)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
47 |
29 |
16 |
0.42 |
0.12 |
0.00 |
0.12 |
0.09 |
0.98 |
1.44 |
1.81 |
0.00 |
0.85 |
7256 |
| 3 |
18 |
16 |
11 |
0.65 |
0.63 |
0.99 |
1.62 |
0.01 |
0.98 |
1.86 |
1.86 |
0.00 |
0.87 |
6263 |
| B |
11 |
12 |
8 |
0.70 |
0.75 |
1.00 |
1.74 |
0.00 |
0.99 |
1.89 |
1.88 |
0.00 |
0.86 |
5017 |
| A |
2 |
2 |
2 |
1.00 |
0.95 |
1.00 |
1.94 |
0.00 |
0.92 |
1.60 |
1.58 |
0.00 |
0.84 |
223 |
| C |
1 |
1 |
1 |
1.00 |
1.00 |
1.00 |
2.00 |
0.00 |
0.98 |
1.84 |
1.84 |
0.00 |
0.93 |
170 |
| E |
5 |
2 |
1 |
0.29 |
0.18 |
0.00 |
0.18 |
0.02 |
0.99 |
1.80 |
1.90 |
0.00 |
0.97 |
1023 |
| M |
28 |
12 |
4 |
0.20 |
0.03 |
0.00 |
0.03 |
0.81 |
0.98 |
0.88 |
1.48 |
0.00 |
0.68 |
831 |
| |
|
| Base Pair (252:274)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
74 |
79 |
54 |
0.71 |
0.94 |
0.98 |
1.92 |
0.98 |
0.99 |
1.02 |
1.00 |
0.00 |
0.84 |
7244 |
| 3 |
32 |
34 |
30 |
0.91 |
0.96 |
0.99 |
1.95 |
0.99 |
0.99 |
1.32 |
1.31 |
0.00 |
0.87 |
6251 |
| B |
25 |
25 |
24 |
0.96 |
0.90 |
1.00 |
1.90 |
1.00 |
1.00 |
1.86 |
1.85 |
0.00 |
0.85 |
5006 |
| A |
2 |
2 |
2 |
1.00 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
1.26 |
1.26 |
0.00 |
0.84 |
222 |
| C |
1 |
1 |
1 |
1.00 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
1.84 |
1.84 |
0.00 |
0.93 |
170 |
| E |
5 |
7 |
4 |
0.67 |
0.66 |
0.96 |
1.62 |
0.96 |
0.97 |
1.59 |
1.47 |
0.00 |
0.97 |
1023 |
| M |
41 |
44 |
23 |
0.54 |
0.78 |
0.91 |
1.70 |
0.91 |
0.93 |
0.30 |
0.30 |
0.00 |
0.67 |
831 |
| |
| Base Pair (253:273)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
68 |
73 |
58 |
0.82 |
0.95 |
0.99 |
1.95 |
0.99 |
0.99 |
1.08 |
1.06 |
0.00 |
0.83 |
7209 |
| 3 |
50 |
56 |
46 |
0.87 |
0.93 |
0.99 |
1.92 |
0.99 |
0.99 |
1.57 |
1.56 |
0.00 |
0.86 |
6207 |
| B |
32 |
37 |
30 |
0.87 |
0.93 |
1.00 |
1.92 |
1.00 |
1.00 |
1.72 |
1.71 |
0.00 |
0.85 |
4958 |
| A |
6 |
5 |
5 |
0.91 |
0.99 |
1.00 |
1.98 |
1.00 |
1.00 |
0.75 |
0.75 |
0.00 |
0.84 |
223 |
| C |
1 |
2 |
1 |
0.67 |
0.00 |
0.00 |
0.00 |
0.99 |
1.00 |
2.00 |
1.95 |
0.00 |
0.93 |
170 |
| E |
12 |
14 |
11 |
0.85 |
0.90 |
0.98 |
1.88 |
0.98 |
0.98 |
1.32 |
1.30 |
0.00 |
0.97 |
1026 |
| M |
17 |
15 |
11 |
0.69 |
0.94 |
0.98 |
1.92 |
0.98 |
0.98 |
-0.21 |
-0.21 |
0.01 |
0.57 |
840 |
| |
| Base Pair (254:272)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
33 |
44 |
22 |
0.57 |
0.76 |
0.99 |
1.75 |
0.99 |
0.99 |
1.22 |
1.08 |
0.02 |
0.77 |
7105 |
| 3 |
4 |
15 |
3 |
0.32 |
0.22 |
0.99 |
1.22 |
0.99 |
1.00 |
1.96 |
1.91 |
0.00 |
0.85 |
6090 |
| B |
1 |
8 |
0 |
0.00 |
0.03 |
0.00 |
0.03 |
0.99 |
1.00 |
1.98 |
1.94 |
0.00 |
0.83 |
4855 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
2.00 |
2.00 |
0.00 |
0.80 |
212 |
| C |
2 |
2 |
2 |
1.00 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
1.91 |
1.91 |
0.00 |
0.93 |
170 |
| E |
3 |
7 |
3 |
0.60 |
0.47 |
0.98 |
1.45 |
0.98 |
1.00 |
1.87 |
1.77 |
0.00 |
0.97 |
1023 |
| M |
27 |
27 |
17 |
0.63 |
0.88 |
0.93 |
1.81 |
0.93 |
0.94 |
-0.90 |
-0.84 |
0.14 |
0.29 |
853 |
| |
| Base Pair (255:271)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
24 |
31 |
18 |
0.66 |
0.75 |
0.99 |
1.74 |
0.99 |
1.00 |
1.16 |
1.04 |
0.02 |
0.77 |
7290 |
| 3 |
11 |
15 |
10 |
0.77 |
0.82 |
1.00 |
1.82 |
1.00 |
1.00 |
1.85 |
1.85 |
0.00 |
0.87 |
6269 |
| B |
1 |
2 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
1.98 |
1.99 |
0.00 |
0.86 |
5019 |
| A |
2 |
4 |
2 |
0.67 |
0.86 |
0.97 |
1.84 |
0.97 |
0.99 |
1.29 |
1.21 |
0.00 |
0.85 |
224 |
| C |
2 |
3 |
2 |
0.80 |
0.67 |
0.99 |
1.66 |
0.99 |
0.99 |
1.91 |
1.79 |
0.01 |
0.93 |
170 |
| E |
8 |
9 |
8 |
0.94 |
0.92 |
0.99 |
1.91 |
0.99 |
1.00 |
1.60 |
1.58 |
0.00 |
0.97 |
1026 |
| M |
11 |
13 |
6 |
0.50 |
0.64 |
0.78 |
1.41 |
0.78 |
0.97 |
-0.57 |
-0.57 |
0.13 |
0.12 |
859 |
| |
| Base Pair (256:270)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
107 |
38 |
24 |
0.33 |
0.24 |
0.93 |
1.17 |
0.93 |
0.94 |
0.85 |
0.99 |
0.02 |
0.77 |
7283 |
| 3 |
91 |
30 |
20 |
0.33 |
0.24 |
0.94 |
1.17 |
0.93 |
0.94 |
1.51 |
1.77 |
0.00 |
0.87 |
6262 |
| B |
72 |
12 |
6 |
0.14 |
0.07 |
0.00 |
0.07 |
0.92 |
0.93 |
1.54 |
1.90 |
0.00 |
0.85 |
5014 |
| A |
12 |
12 |
8 |
0.67 |
0.72 |
0.90 |
1.62 |
0.84 |
0.97 |
0.68 |
0.55 |
0.00 |
0.84 |
223 |
| C |
8 |
3 |
2 |
0.36 |
0.06 |
0.00 |
0.06 |
0.91 |
0.91 |
1.52 |
1.68 |
0.00 |
0.93 |
170 |
| E |
7 |
6 |
6 |
0.92 |
0.82 |
0.99 |
1.81 |
0.99 |
0.99 |
1.71 |
1.68 |
0.00 |
0.97 |
1025 |
| M |
8 |
5 |
2 |
0.31 |
0.05 |
0.00 |
0.05 |
0.12 |
0.12 |
-0.47 |
-0.42 |
0.00 |
0.00 |
859 |
| |
| Base Pair (257:269)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
154 |
193 |
58 |
0.33 |
0.48 |
0.68 |
1.17 |
0.68 |
0.99 |
0.41 |
0.27 |
0.02 |
0.76 |
7236 |
| 3 |
127 |
179 |
51 |
0.33 |
0.48 |
0.69 |
1.17 |
0.69 |
0.99 |
1.03 |
0.95 |
0.00 |
0.86 |
6215 |
| B |
115 |
171 |
44 |
0.31 |
0.30 |
0.62 |
0.92 |
0.62 |
1.00 |
1.31 |
0.96 |
0.00 |
0.85 |
4967 |
| A |
3 |
2 |
2 |
0.80 |
0.86 |
0.99 |
1.84 |
0.99 |
0.99 |
1.51 |
1.56 |
0.00 |
0.84 |
223 |
| C |
18 |
10 |
3 |
0.21 |
0.00 |
0.00 |
0.00 |
0.43 |
0.99 |
1.06 |
1.38 |
0.01 |
0.93 |
170 |
| E |
9 |
6 |
5 |
0.67 |
0.44 |
0.97 |
1.41 |
0.97 |
0.97 |
1.59 |
1.68 |
0.00 |
0.97 |
1025 |
| M |
9 |
4 |
4 |
0.61 |
0.04 |
0.00 |
0.04 |
0.10 |
0.10 |
-0.47 |
-0.41 |
0.00 |
0.00 |
859 |
| |
| Base Pair (258:268)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
222 |
214 |
143 |
0.66 |
0.80 |
0.91 |
1.72 |
0.91 |
0.96 |
0.30 |
0.27 |
0.02 |
0.77 |
7275 |
| 3 |
186 |
187 |
124 |
0.67 |
0.80 |
0.91 |
1.71 |
0.92 |
0.96 |
0.90 |
0.95 |
0.00 |
0.87 |
6254 |
| B |
165 |
171 |
111 |
0.66 |
0.80 |
0.91 |
1.71 |
0.91 |
0.97 |
0.93 |
0.91 |
0.00 |
0.85 |
5005 |
| A |
5 |
2 |
2 |
0.57 |
0.29 |
0.95 |
1.24 |
0.95 |
0.95 |
1.66 |
1.87 |
0.00 |
0.84 |
223 |
| C |
24 |
17 |
10 |
0.49 |
0.72 |
0.91 |
1.63 |
0.91 |
0.99 |
0.79 |
0.92 |
0.00 |
0.93 |
170 |
| E |
16 |
14 |
11 |
0.73 |
0.78 |
0.93 |
1.71 |
0.93 |
0.94 |
0.84 |
1.13 |
0.00 |
0.97 |
1026 |
| M |
12 |
10 |
9 |
0.82 |
0.03 |
0.00 |
0.03 |
0.10 |
0.10 |
-0.44 |
-0.39 |
0.00 |
0.00 |
859 |
| |
| Base Pair (259:267)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
59 |
52 |
48 |
0.86 |
0.78 |
0.98 |
1.76 |
0.98 |
0.99 |
0.94 |
0.91 |
0.02 |
0.77 |
7297 |
| 3 |
48 |
42 |
39 |
0.87 |
0.78 |
0.99 |
1.76 |
0.99 |
0.99 |
1.59 |
1.66 |
0.00 |
0.87 |
6276 |
| B |
25 |
21 |
20 |
0.87 |
0.44 |
0.99 |
1.42 |
0.99 |
0.99 |
1.81 |
1.90 |
0.00 |
0.86 |
5029 |
| A |
4 |
4 |
4 |
1.00 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
1.24 |
1.25 |
0.00 |
0.84 |
222 |
| C |
4 |
2 |
2 |
0.67 |
0.67 |
0.99 |
1.66 |
0.99 |
0.99 |
1.75 |
1.78 |
0.00 |
0.93 |
170 |
| E |
19 |
17 |
15 |
0.83 |
0.91 |
0.98 |
1.89 |
0.98 |
0.98 |
0.97 |
1.01 |
0.00 |
0.97 |
1025 |
| M |
7 |
8 |
7 |
0.93 |
0.03 |
0.00 |
0.03 |
0.10 |
0.10 |
-0.40 |
-0.36 |
0.00 |
0.00 |
859 |
| |
Last generated : Fri Jun 16 2000 (14 : 29)