16S rRNA Model Base Pair Collective Scoring Data for Helical Element 406
| Base Pair (406:436)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
30 |
18 |
5 |
0.21 |
0.47 |
0.99 |
1.46 |
0.99 |
1.00 |
0.58 |
0.59 |
0.01 |
0.63 |
7096 |
| 3 |
5 |
9 |
1 |
0.14 |
0.05 |
0.00 |
0.05 |
0.99 |
1.00 |
1.00 |
0.96 |
0.00 |
0.71 |
6109 |
| B |
3 |
9 |
1 |
0.17 |
0.05 |
0.00 |
0.05 |
0.99 |
1.00 |
1.97 |
1.93 |
0.00 |
0.83 |
4861 |
| A |
2 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.99 |
0.99 |
1.86 |
1.91 |
0.00 |
0.82 |
218 |
| C |
2 |
3 |
1 |
0.40 |
0.33 |
0.99 |
1.32 |
0.99 |
0.99 |
1.91 |
1.85 |
0.00 |
0.89 |
162 |
| E |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
-0.02 |
0.00 |
0.00 |
0.00 |
1030 |
| M |
23 |
6 |
3 |
0.21 |
0.05 |
0.00 |
0.05 |
0.10 |
0.11 |
-0.75 |
-0.43 |
0.00 |
0.00 |
833 |
| |
| Base Pair (407:435)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
161 |
129 |
109 |
0.75 |
0.88 |
0.94 |
1.83 |
0.94 |
0.99 |
-0.58 |
-0.53 |
0.01 |
0.63 |
7123 |
| 3 |
129 |
109 |
98 |
0.82 |
0.90 |
0.95 |
1.85 |
0.95 |
0.99 |
-0.43 |
-0.35 |
0.00 |
0.71 |
6135 |
| B |
117 |
102 |
93 |
0.85 |
0.89 |
0.95 |
1.84 |
0.95 |
1.00 |
0.31 |
0.42 |
0.00 |
0.83 |
4877 |
| A |
12 |
7 |
5 |
0.53 |
0.65 |
0.95 |
1.59 |
0.95 |
0.97 |
1.23 |
1.33 |
0.00 |
0.86 |
228 |
| C |
12 |
11 |
7 |
0.61 |
0.51 |
0.77 |
1.28 |
0.77 |
0.97 |
0.76 |
0.99 |
0.00 |
0.90 |
163 |
| E |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
1030 |
| M |
20 |
9 |
4 |
0.28 |
0.01 |
0.00 |
0.01 |
0.10 |
0.11 |
-0.58 |
-0.36 |
0.00 |
0.00 |
833 |
| |
| Base Pair (408:434)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
116 |
108 |
98 |
0.88 |
0.93 |
0.98 |
1.91 |
0.98 |
0.99 |
-0.17 |
-0.18 |
0.01 |
0.64 |
7231 |
| 3 |
92 |
89 |
83 |
0.92 |
0.93 |
0.98 |
1.91 |
0.98 |
0.99 |
0.09 |
0.08 |
0.00 |
0.72 |
6242 |
| B |
79 |
80 |
75 |
0.94 |
0.94 |
0.98 |
1.92 |
0.98 |
0.99 |
1.05 |
1.02 |
0.00 |
0.85 |
4983 |
| A |
13 |
9 |
8 |
0.73 |
0.77 |
0.91 |
1.68 |
0.91 |
0.99 |
0.52 |
0.71 |
0.00 |
0.86 |
229 |
| C |
7 |
8 |
7 |
0.93 |
0.92 |
0.97 |
1.89 |
0.97 |
0.97 |
0.98 |
0.95 |
0.00 |
0.90 |
164 |
| E |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
1030 |
| M |
17 |
11 |
8 |
0.57 |
0.06 |
0.00 |
0.06 |
0.10 |
0.11 |
-0.62 |
-0.47 |
0.00 |
0.00 |
833 |
| |
| Base Pair (409:433)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
90 |
103 |
41 |
0.42 |
0.70 |
0.83 |
1.52 |
0.56 |
1.00 |
-0.39 |
-0.39 |
0.02 |
0.62 |
7256 |
| 3 |
73 |
86 |
30 |
0.38 |
0.68 |
0.82 |
1.51 |
0.55 |
1.00 |
-0.21 |
-0.19 |
0.03 |
0.70 |
6267 |
| B |
73 |
79 |
30 |
0.40 |
0.68 |
0.82 |
1.51 |
0.55 |
1.00 |
0.65 |
0.68 |
0.00 |
0.85 |
5000 |
| A |
0 |
7 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
-0.54 |
0.00 |
0.00 |
237 |
| C |
4 |
3 |
3 |
0.86 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
1.79 |
1.77 |
0.01 |
0.89 |
164 |
| E |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
1030 |
| M |
13 |
14 |
8 |
0.59 |
0.04 |
0.00 |
0.04 |
0.06 |
0.10 |
-0.54 |
-0.47 |
0.00 |
0.00 |
833 |
| |
|
| Base Pair (416:427)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
48 |
72 |
10 |
0.17 |
0.07 |
0.00 |
0.07 |
0.19 |
0.97 |
0.35 |
0.05 |
0.00 |
0.61 |
7239 |
| 3 |
26 |
58 |
3 |
0.07 |
0.05 |
0.00 |
0.05 |
0.17 |
0.97 |
0.66 |
0.32 |
0.00 |
0.69 |
6249 |
| B |
26 |
58 |
3 |
0.07 |
0.05 |
0.00 |
0.05 |
0.17 |
0.97 |
1.73 |
1.30 |
0.00 |
0.85 |
4982 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
237 |
| C |
11 |
7 |
3 |
0.33 |
0.04 |
0.00 |
0.04 |
0.48 |
0.93 |
1.20 |
0.96 |
0.01 |
0.89 |
163 |
| E |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
1030 |
| M |
11 |
7 |
4 |
0.44 |
0.03 |
0.00 |
0.03 |
0.07 |
0.10 |
-0.46 |
-0.42 |
0.00 |
0.00 |
835 |
| |
| Base Pair (417:426)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
39 |
43 |
20 |
0.49 |
0.71 |
0.97 |
1.69 |
0.09 |
0.99 |
0.20 |
0.23 |
0.00 |
0.62 |
7257 |
| 3 |
25 |
29 |
13 |
0.48 |
0.82 |
0.98 |
1.81 |
0.08 |
0.99 |
0.48 |
0.47 |
0.00 |
0.69 |
6265 |
| B |
25 |
29 |
13 |
0.48 |
0.82 |
0.98 |
1.81 |
0.08 |
0.99 |
1.51 |
1.48 |
0.00 |
0.85 |
4998 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
237 |
| C |
5 |
3 |
2 |
0.50 |
0.11 |
0.00 |
0.11 |
0.09 |
0.98 |
1.66 |
1.56 |
0.00 |
0.91 |
165 |
| E |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
1030 |
| M |
9 |
11 |
5 |
0.50 |
0.01 |
0.00 |
0.01 |
0.06 |
0.10 |
-0.43 |
-0.38 |
0.00 |
0.00 |
835 |
| |
| Base Pair (418:425)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
106 |
107 |
97 |
0.91 |
0.97 |
0.99 |
1.96 |
0.99 |
0.99 |
-0.25 |
-0.22 |
0.01 |
0.61 |
7217 |
| 3 |
91 |
91 |
84 |
0.92 |
0.97 |
0.99 |
1.96 |
0.99 |
0.99 |
-0.04 |
-0.01 |
0.01 |
0.68 |
6227 |
| B |
91 |
91 |
84 |
0.92 |
0.97 |
0.99 |
1.96 |
0.99 |
0.99 |
0.80 |
0.90 |
0.01 |
0.84 |
4960 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
237 |
| C |
10 |
9 |
9 |
0.95 |
0.96 |
0.99 |
1.96 |
0.99 |
1.00 |
1.11 |
1.13 |
0.00 |
0.90 |
163 |
| E |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
1030 |
| M |
5 |
7 |
4 |
0.67 |
0.06 |
0.00 |
0.06 |
0.09 |
0.10 |
-0.48 |
-0.47 |
0.00 |
0.00 |
835 |
| |
| Base Pair (419:424)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
103 |
33 |
16 |
0.23 |
0.10 |
0.00 |
0.10 |
0.82 |
1.00 |
-0.04 |
0.46 |
0.02 |
0.59 |
7217 |
| 3 |
86 |
23 |
10 |
0.18 |
0.06 |
0.00 |
0.06 |
0.82 |
1.00 |
0.19 |
0.79 |
0.02 |
0.67 |
6225 |
| B |
86 |
23 |
10 |
0.18 |
0.06 |
0.00 |
0.06 |
0.82 |
1.00 |
1.00 |
1.89 |
0.03 |
0.82 |
4957 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
237 |
| C |
10 |
7 |
4 |
0.47 |
0.21 |
0.88 |
1.09 |
0.88 |
0.99 |
1.33 |
1.63 |
0.00 |
0.90 |
165 |
| E |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
1030 |
| M |
7 |
3 |
2 |
0.40 |
0.04 |
0.00 |
0.04 |
0.07 |
0.08 |
-0.42 |
-0.41 |
0.00 |
0.00 |
835 |
| |
Last generated : Fri Jun 16 2000 (14 : 29)