16S rRNA Model Base Pair Collective Scoring Data for Helical Element 921
| Base Pair (921:1396)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
11 |
9 |
6 |
0.60 |
0.90 |
1.00 |
1.89 |
1.00 |
1.00 |
1.77 |
1.80 |
0.00 |
0.70 |
5964 |
| 3 |
6 |
5 |
2 |
0.36 |
0.86 |
1.00 |
1.85 |
1.00 |
1.00 |
1.79 |
1.82 |
0.00 |
0.69 |
4935 |
| B |
5 |
5 |
2 |
0.40 |
0.88 |
1.00 |
1.87 |
1.00 |
1.00 |
1.75 |
1.79 |
0.00 |
0.65 |
3789 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
2.00 |
2.00 |
0.00 |
0.65 |
171 |
| C |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
2.00 |
2.00 |
0.00 |
0.85 |
154 |
| E |
1 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
1.97 |
1.99 |
0.00 |
0.92 |
974 |
| M |
5 |
4 |
4 |
0.89 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
1.72 |
1.66 |
0.00 |
0.75 |
876 |
| |
| Base Pair (922:1395)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
8 |
1 |
1 |
0.22 |
0.09 |
0.00 |
0.09 |
1.00 |
1.00 |
1.94 |
1.99 |
0.00 |
0.70 |
5971 |
| 3 |
6 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
1.96 |
1.99 |
0.00 |
0.69 |
4942 |
| B |
5 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
1.96 |
1.99 |
0.00 |
0.65 |
3794 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
2.00 |
2.00 |
0.00 |
0.65 |
172 |
| C |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
2.00 |
2.00 |
0.00 |
0.85 |
154 |
| E |
1 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
1.95 |
1.99 |
0.00 |
0.92 |
975 |
| M |
2 |
1 |
1 |
0.67 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
1.91 |
1.97 |
0.01 |
0.75 |
876 |
| |
|
| Base Pair (923:1393)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
44 |
54 |
18 |
0.37 |
0.60 |
0.94 |
1.54 |
0.94 |
0.99 |
1.31 |
1.56 |
0.00 |
0.70 |
5965 |
| 3 |
17 |
14 |
8 |
0.52 |
0.84 |
0.99 |
1.83 |
0.99 |
0.99 |
1.67 |
1.75 |
0.00 |
0.68 |
4916 |
| B |
14 |
12 |
7 |
0.54 |
0.40 |
0.99 |
1.39 |
0.99 |
0.99 |
1.87 |
1.94 |
0.00 |
0.64 |
3773 |
| A |
1 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
1.93 |
2.00 |
0.00 |
0.64 |
169 |
| C |
4 |
4 |
1 |
0.25 |
0.00 |
0.00 |
0.00 |
0.95 |
0.98 |
1.74 |
1.86 |
0.01 |
0.83 |
153 |
| E |
2 |
2 |
1 |
0.50 |
0.10 |
0.00 |
0.10 |
0.99 |
1.00 |
1.90 |
1.96 |
0.00 |
0.92 |
973 |
| M |
23 |
36 |
9 |
0.30 |
0.51 |
0.67 |
1.18 |
0.67 |
0.97 |
1.06 |
1.02 |
0.00 |
0.77 |
897 |
| |
| Base Pair (924:1392)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
14 |
9 |
3 |
0.26 |
0.07 |
0.00 |
0.07 |
0.99 |
1.00 |
1.94 |
1.96 |
0.00 |
0.70 |
5980 |
| 3 |
5 |
3 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
1.96 |
1.97 |
0.00 |
0.69 |
4928 |
| B |
4 |
3 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
1.96 |
1.97 |
0.00 |
0.65 |
3785 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
1.93 |
2.00 |
0.00 |
0.64 |
169 |
| C |
0 |
2 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.99 |
0.99 |
2.00 |
1.95 |
0.00 |
0.85 |
154 |
| E |
1 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
1.98 |
1.96 |
0.00 |
0.92 |
973 |
| M |
9 |
4 |
3 |
0.46 |
0.13 |
0.00 |
0.13 |
0.99 |
0.99 |
1.90 |
1.95 |
0.00 |
0.78 |
899 |
| |
| Base Pair (925:1391)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
12 |
31 |
1 |
0.05 |
0.05 |
0.00 |
0.05 |
0.11 |
0.99 |
1.90 |
1.45 |
0.00 |
0.69 |
5916 |
| 3 |
5 |
6 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.96 |
1.96 |
0.00 |
0.68 |
4863 |
| B |
5 |
5 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.96 |
1.96 |
0.00 |
0.63 |
3712 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
2.00 |
2.00 |
0.00 |
0.67 |
177 |
| C |
0 |
1 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.01 |
1.00 |
2.00 |
1.95 |
0.00 |
0.85 |
154 |
| E |
0 |
1 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.99 |
1.98 |
0.00 |
0.92 |
974 |
| M |
7 |
24 |
1 |
0.07 |
0.14 |
0.00 |
0.14 |
0.71 |
0.99 |
1.71 |
0.84 |
0.00 |
0.78 |
899 |
| |
|
| Base Pair (927:1390)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
30 |
41 |
11 |
0.31 |
0.23 |
0.76 |
1.00 |
0.24 |
0.99 |
0.76 |
1.25 |
0.00 |
0.70 |
5980 |
| 3 |
6 |
5 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.20 |
1.00 |
1.31 |
1.96 |
0.00 |
0.69 |
4930 |
| B |
2 |
5 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.97 |
1.96 |
0.00 |
0.64 |
3778 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
2.00 |
2.00 |
0.00 |
0.67 |
177 |
| C |
0 |
1 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.01 |
1.00 |
2.00 |
1.95 |
0.00 |
0.84 |
153 |
| E |
4 |
0 |
0 |
0.00 |
0.05 |
0.00 |
0.05 |
0.98 |
1.00 |
1.86 |
1.94 |
0.00 |
0.92 |
975 |
| M |
24 |
35 |
11 |
0.37 |
0.10 |
0.00 |
0.10 |
0.52 |
0.97 |
1.50 |
0.61 |
0.00 |
0.77 |
897 |
| |
| Base Pair (928:1389)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
58 |
64 |
41 |
0.67 |
0.91 |
0.98 |
1.88 |
0.98 |
0.99 |
1.14 |
1.13 |
0.00 |
0.68 |
5797 |
| 3 |
14 |
17 |
9 |
0.58 |
0.98 |
1.00 |
1.98 |
1.00 |
1.00 |
1.21 |
1.18 |
0.00 |
0.66 |
4744 |
| B |
10 |
13 |
6 |
0.52 |
0.85 |
0.99 |
1.84 |
0.99 |
1.00 |
1.77 |
1.76 |
0.00 |
0.61 |
3589 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
2.00 |
2.00 |
0.00 |
0.69 |
181 |
| C |
7 |
7 |
7 |
1.00 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
1.49 |
1.55 |
0.01 |
0.83 |
153 |
| E |
4 |
4 |
3 |
0.75 |
0.93 |
1.00 |
1.93 |
1.00 |
1.00 |
1.89 |
1.86 |
0.00 |
0.92 |
974 |
| M |
37 |
40 |
25 |
0.65 |
0.66 |
0.87 |
1.54 |
0.87 |
0.93 |
0.87 |
0.92 |
0.00 |
0.78 |
900 |
| |
| Base Pair (929:1388)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
108 |
116 |
68 |
0.61 |
0.91 |
0.97 |
1.88 |
0.97 |
0.98 |
0.60 |
0.68 |
0.00 |
0.69 |
5933 |
| 3 |
49 |
53 |
32 |
0.63 |
0.93 |
0.99 |
1.92 |
0.99 |
0.99 |
1.13 |
1.14 |
0.00 |
0.67 |
4854 |
| B |
43 |
47 |
27 |
0.60 |
0.93 |
0.98 |
1.92 |
0.98 |
0.99 |
1.05 |
1.06 |
0.00 |
0.63 |
3698 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.99 |
0.99 |
1.96 |
2.00 |
0.00 |
0.69 |
182 |
| C |
11 |
12 |
10 |
0.87 |
0.86 |
0.98 |
1.84 |
0.98 |
0.99 |
1.36 |
1.40 |
0.01 |
0.83 |
153 |
| E |
6 |
6 |
5 |
0.83 |
0.90 |
0.99 |
1.89 |
0.99 |
1.00 |
1.59 |
1.58 |
0.00 |
0.92 |
974 |
| M |
48 |
51 |
26 |
0.53 |
0.66 |
0.89 |
1.54 |
0.89 |
0.91 |
0.84 |
0.71 |
0.01 |
0.79 |
926 |
| |
| Base Pair (930:1387)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
86 |
77 |
47 |
0.58 |
0.91 |
0.97 |
1.88 |
0.97 |
0.99 |
0.68 |
0.81 |
0.00 |
0.69 |
5948 |
| 3 |
30 |
23 |
13 |
0.49 |
0.91 |
0.97 |
1.88 |
0.97 |
0.99 |
0.83 |
0.95 |
0.00 |
0.67 |
4869 |
| B |
21 |
15 |
8 |
0.44 |
0.37 |
0.97 |
1.34 |
0.97 |
0.99 |
1.65 |
1.83 |
0.01 |
0.63 |
3705 |
| A |
2 |
2 |
2 |
1.00 |
0.92 |
0.99 |
1.91 |
0.99 |
0.99 |
1.71 |
1.61 |
0.00 |
0.71 |
189 |
| C |
3 |
3 |
2 |
0.67 |
0.80 |
0.99 |
1.79 |
0.99 |
1.00 |
1.63 |
1.83 |
0.02 |
0.82 |
152 |
| E |
7 |
6 |
3 |
0.46 |
0.57 |
0.97 |
1.54 |
0.97 |
0.98 |
1.65 |
1.70 |
0.00 |
0.92 |
975 |
| M |
53 |
51 |
31 |
0.60 |
0.89 |
0.95 |
1.84 |
0.95 |
0.98 |
0.90 |
0.92 |
0.00 |
0.80 |
927 |
| |
| Base Pair (931:1386)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
54 |
57 |
29 |
0.52 |
0.93 |
0.98 |
1.91 |
0.98 |
0.99 |
0.77 |
0.84 |
0.00 |
0.71 |
6028 |
| 3 |
15 |
9 |
8 |
0.67 |
0.95 |
0.99 |
1.94 |
0.99 |
1.00 |
1.02 |
1.09 |
0.00 |
0.69 |
4950 |
| B |
8 |
4 |
3 |
0.50 |
0.36 |
0.98 |
1.35 |
0.98 |
1.00 |
1.77 |
1.90 |
0.00 |
0.64 |
3786 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
1.96 |
2.00 |
0.00 |
0.71 |
188 |
| C |
4 |
3 |
2 |
0.57 |
0.68 |
0.96 |
1.65 |
0.96 |
0.98 |
1.44 |
1.54 |
0.00 |
0.83 |
152 |
| E |
7 |
5 |
5 |
0.83 |
0.93 |
1.00 |
1.93 |
1.00 |
1.00 |
1.65 |
1.68 |
0.00 |
0.93 |
976 |
| M |
35 |
45 |
19 |
0.47 |
0.88 |
0.93 |
1.81 |
0.93 |
0.96 |
0.86 |
0.78 |
0.00 |
0.80 |
926 |
| |
| Base Pair (932:1385)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
85 |
65 |
29 |
0.39 |
0.52 |
0.94 |
1.46 |
0.94 |
0.99 |
1.11 |
1.58 |
0.03 |
0.63 |
5561 |
| 3 |
18 |
4 |
4 |
0.36 |
0.53 |
0.99 |
1.51 |
0.99 |
1.00 |
1.49 |
1.88 |
0.03 |
0.60 |
4482 |
| B |
12 |
4 |
4 |
0.50 |
0.76 |
0.99 |
1.75 |
0.99 |
1.00 |
1.41 |
1.86 |
0.03 |
0.54 |
3328 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
2.00 |
2.00 |
0.00 |
0.69 |
181 |
| C |
4 |
3 |
3 |
0.86 |
0.91 |
0.99 |
1.90 |
0.99 |
1.00 |
1.39 |
1.66 |
0.03 |
0.81 |
153 |
| E |
6 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.96 |
1.00 |
1.77 |
1.98 |
0.00 |
0.92 |
973 |
| M |
63 |
58 |
22 |
0.36 |
0.51 |
0.72 |
1.23 |
0.72 |
0.94 |
0.54 |
0.62 |
0.01 |
0.78 |
927 |
| |
| Base Pair (933:1384)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
42 |
35 |
18 |
0.47 |
0.97 |
0.99 |
1.96 |
0.99 |
0.99 |
0.96 |
1.02 |
0.00 |
0.71 |
6101 |
| 3 |
16 |
11 |
5 |
0.37 |
0.97 |
0.99 |
1.97 |
0.99 |
0.99 |
1.13 |
1.17 |
0.00 |
0.70 |
5023 |
| B |
12 |
9 |
3 |
0.29 |
0.53 |
0.99 |
1.52 |
0.99 |
0.99 |
1.78 |
1.87 |
0.00 |
0.66 |
3861 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
2.00 |
2.00 |
0.00 |
0.72 |
189 |
| C |
4 |
4 |
4 |
1.00 |
0.83 |
0.99 |
1.82 |
0.99 |
0.99 |
1.53 |
1.59 |
0.01 |
0.83 |
153 |
| E |
4 |
2 |
2 |
0.67 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
1.98 |
1.99 |
0.00 |
0.92 |
973 |
| M |
22 |
20 |
9 |
0.43 |
0.54 |
0.97 |
1.50 |
0.97 |
0.97 |
1.64 |
1.53 |
0.00 |
0.79 |
925 |
| |
|
| Base Pair (935:1380)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
20 |
24 |
4 |
0.18 |
0.92 |
0.99 |
1.91 |
0.99 |
0.99 |
1.31 |
1.34 |
0.00 |
0.73 |
6264 |
| 3 |
7 |
4 |
1 |
0.18 |
0.09 |
0.00 |
0.09 |
1.00 |
1.00 |
1.93 |
1.97 |
0.00 |
0.71 |
5140 |
| B |
3 |
3 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
1.94 |
1.97 |
0.00 |
0.68 |
3978 |
| A |
3 |
1 |
1 |
0.50 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
1.77 |
1.92 |
0.00 |
0.72 |
189 |
| C |
1 |
2 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.98 |
0.99 |
1.95 |
1.82 |
0.01 |
0.84 |
154 |
| E |
1 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
1.97 |
1.96 |
0.00 |
0.92 |
973 |
| M |
12 |
18 |
3 |
0.20 |
0.45 |
0.94 |
1.39 |
0.94 |
0.94 |
1.47 |
1.32 |
0.00 |
0.83 |
970 |
| |
| Base Pair (936:1379)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
28 |
38 |
11 |
0.33 |
0.34 |
0.98 |
1.32 |
0.98 |
0.98 |
1.80 |
1.72 |
0.00 |
0.73 |
6291 |
| 3 |
5 |
2 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.99 |
1.00 |
1.94 |
1.94 |
0.00 |
0.72 |
5166 |
| B |
4 |
2 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.99 |
0.99 |
1.94 |
1.98 |
0.00 |
0.68 |
4002 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
2.00 |
2.00 |
0.00 |
0.71 |
188 |
| C |
1 |
3 |
1 |
0.50 |
0.20 |
0.00 |
0.20 |
0.97 |
0.97 |
1.95 |
1.70 |
0.01 |
0.84 |
154 |
| E |
1 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.99 |
0.99 |
1.92 |
1.80 |
0.02 |
0.90 |
975 |
| M |
22 |
33 |
10 |
0.36 |
0.41 |
0.88 |
1.29 |
0.88 |
0.89 |
1.38 |
0.99 |
0.01 |
0.83 |
971 |
| |
Last generated : Fri Jun 16 2000 (14 : 29)