16S rRNA Model Base Pair Collective Scoring Data for Helical Element 944
| Base Pair (944:1237)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
3 |
4 |
0 |
0.00 |
0.04 |
0.00 |
0.04 |
1.00 |
1.00 |
1.95 |
1.97 |
0.00 |
0.78 |
6633 |
| 3 |
2 |
1 |
0 |
0.00 |
0.11 |
0.00 |
0.11 |
1.00 |
1.00 |
1.96 |
1.99 |
0.00 |
0.74 |
5326 |
| B |
2 |
1 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
1.97 |
1.99 |
0.00 |
0.71 |
4162 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.99 |
0.99 |
1.96 |
2.00 |
0.00 |
0.72 |
191 |
| C |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
2.00 |
2.00 |
0.00 |
0.88 |
160 |
| E |
0 |
0 |
0 |
0.00 |
0.50 |
1.00 |
1.50 |
1.00 |
1.00 |
1.92 |
1.98 |
0.01 |
0.92 |
972 |
| M |
1 |
3 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.99 |
1.00 |
1.95 |
1.90 |
0.00 |
0.99 |
1152 |
| |
| Base Pair (945:1236) (Tertiary)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
18 |
13 |
6 |
0.39 |
0.29 |
0.99 |
1.28 |
0.00 |
0.00 |
1.85 |
1.94 |
0.00 |
0.78 |
6663 |
| 3 |
13 |
6 |
4 |
0.42 |
0.44 |
0.99 |
1.43 |
0.00 |
0.00 |
1.88 |
1.95 |
0.00 |
0.74 |
5356 |
| B |
7 |
2 |
1 |
0.22 |
0.08 |
0.00 |
0.08 |
0.00 |
0.00 |
1.92 |
1.99 |
0.00 |
0.71 |
4190 |
| A |
5 |
4 |
3 |
0.67 |
1.00 |
1.00 |
2.00 |
0.00 |
0.00 |
1.39 |
1.47 |
0.00 |
0.72 |
190 |
| C |
2 |
1 |
1 |
0.67 |
0.75 |
0.99 |
1.74 |
0.00 |
0.00 |
1.81 |
1.87 |
0.00 |
0.88 |
160 |
| E |
1 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
1.90 |
1.97 |
0.01 |
0.92 |
976 |
| M |
3 |
6 |
1 |
0.22 |
0.05 |
0.00 |
0.05 |
0.00 |
0.00 |
1.79 |
1.94 |
0.00 |
0.99 |
1152 |
| |
| Base Pair (946:1235)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
21 |
18 |
13 |
0.67 |
0.20 |
0.00 |
0.20 |
0.99 |
0.99 |
1.90 |
1.90 |
0.00 |
0.78 |
6663 |
| 3 |
9 |
4 |
3 |
0.46 |
0.30 |
0.99 |
1.29 |
0.99 |
1.00 |
1.91 |
1.95 |
0.00 |
0.74 |
5357 |
| B |
5 |
4 |
3 |
0.67 |
0.48 |
1.00 |
1.48 |
0.99 |
1.00 |
1.94 |
1.96 |
0.00 |
0.72 |
4200 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
2.00 |
2.00 |
0.00 |
0.70 |
186 |
| C |
4 |
2 |
2 |
0.67 |
0.67 |
0.99 |
1.65 |
0.99 |
1.00 |
1.77 |
1.84 |
0.00 |
0.88 |
160 |
| E |
4 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.98 |
0.99 |
1.77 |
1.94 |
0.01 |
0.91 |
971 |
| M |
8 |
12 |
8 |
0.80 |
0.18 |
0.00 |
0.18 |
0.97 |
0.97 |
1.93 |
1.74 |
0.00 |
0.99 |
1151 |
| |
| Base Pair (947:1234)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
51 |
47 |
36 |
0.73 |
0.87 |
0.99 |
1.86 |
0.99 |
0.99 |
1.43 |
1.49 |
0.00 |
0.78 |
6646 |
| 3 |
32 |
26 |
22 |
0.76 |
0.88 |
0.99 |
1.87 |
0.99 |
0.99 |
1.42 |
1.50 |
0.00 |
0.74 |
5339 |
| B |
14 |
15 |
12 |
0.83 |
0.94 |
0.99 |
1.93 |
0.99 |
0.99 |
1.49 |
1.54 |
0.00 |
0.71 |
4186 |
| A |
5 |
3 |
3 |
0.75 |
0.91 |
0.98 |
1.90 |
0.98 |
0.99 |
1.21 |
1.35 |
0.00 |
0.70 |
184 |
| C |
3 |
5 |
2 |
0.50 |
0.86 |
0.98 |
1.84 |
0.98 |
0.99 |
1.37 |
1.30 |
0.00 |
0.88 |
160 |
| E |
13 |
8 |
7 |
0.67 |
0.70 |
0.96 |
1.67 |
0.96 |
0.97 |
1.24 |
1.45 |
0.01 |
0.91 |
969 |
| M |
16 |
16 |
12 |
0.75 |
0.83 |
0.99 |
1.82 |
0.99 |
0.99 |
1.56 |
1.56 |
0.00 |
0.99 |
1152 |
| |
| Base Pair (948:1233)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
66 |
58 |
43 |
0.69 |
0.81 |
0.98 |
1.79 |
0.98 |
0.99 |
1.37 |
1.45 |
0.01 |
0.77 |
6626 |
| 3 |
46 |
42 |
29 |
0.66 |
0.85 |
0.98 |
1.83 |
0.98 |
0.99 |
1.34 |
1.42 |
0.01 |
0.73 |
5320 |
| B |
33 |
35 |
23 |
0.68 |
0.91 |
0.99 |
1.90 |
0.99 |
0.99 |
1.33 |
1.38 |
0.01 |
0.71 |
4166 |
| A |
3 |
1 |
1 |
0.50 |
0.40 |
0.98 |
1.38 |
0.98 |
0.98 |
1.51 |
1.91 |
0.01 |
0.69 |
183 |
| C |
8 |
6 |
5 |
0.71 |
0.85 |
0.97 |
1.82 |
0.97 |
1.00 |
1.27 |
1.27 |
0.00 |
0.88 |
160 |
| E |
10 |
6 |
5 |
0.62 |
0.60 |
0.96 |
1.56 |
0.96 |
0.97 |
1.42 |
1.55 |
0.01 |
0.91 |
971 |
| M |
12 |
10 |
9 |
0.82 |
0.59 |
0.97 |
1.56 |
0.97 |
1.00 |
1.57 |
1.69 |
0.00 |
0.99 |
1151 |
| |
| Base Pair (949:1232)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
45 |
39 |
26 |
0.62 |
0.60 |
0.86 |
1.46 |
0.86 |
0.87 |
0.84 |
0.80 |
0.00 |
0.77 |
6617 |
| 3 |
29 |
23 |
15 |
0.58 |
0.57 |
0.91 |
1.47 |
0.83 |
0.83 |
1.02 |
1.17 |
0.00 |
0.74 |
5310 |
| B |
9 |
8 |
7 |
0.82 |
0.68 |
1.00 |
1.68 |
1.00 |
1.00 |
1.90 |
1.91 |
0.00 |
0.71 |
4169 |
| A |
5 |
3 |
2 |
0.50 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
1.13 |
1.30 |
0.00 |
0.65 |
173 |
| C |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
2.00 |
2.00 |
0.00 |
0.88 |
160 |
| E |
15 |
12 |
6 |
0.44 |
0.15 |
0.00 |
0.15 |
0.09 |
0.09 |
0.99 |
1.22 |
0.01 |
0.90 |
968 |
| M |
16 |
16 |
11 |
0.69 |
0.90 |
0.99 |
1.88 |
0.99 |
0.99 |
1.38 |
1.38 |
0.00 |
0.99 |
1152 |
| |
| Base Pair (950:1231)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
15 |
26 |
1 |
0.05 |
0.01 |
0.00 |
0.01 |
0.12 |
0.99 |
1.92 |
1.43 |
0.00 |
0.78 |
6649 |
| 3 |
8 |
12 |
1 |
0.10 |
0.01 |
0.00 |
0.01 |
0.15 |
1.00 |
1.92 |
1.38 |
0.00 |
0.74 |
5342 |
| B |
5 |
11 |
1 |
0.12 |
0.01 |
0.00 |
0.01 |
0.19 |
1.00 |
1.95 |
1.30 |
0.00 |
0.71 |
4184 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.01 |
1.00 |
1.91 |
2.00 |
0.00 |
0.70 |
184 |
| C |
2 |
3 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.04 |
1.00 |
1.87 |
1.75 |
0.01 |
0.87 |
160 |
| E |
3 |
1 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.99 |
1.83 |
1.94 |
0.00 |
0.92 |
974 |
| M |
5 |
11 |
0 |
0.00 |
0.16 |
0.00 |
0.16 |
0.01 |
0.99 |
1.94 |
1.89 |
0.00 |
0.99 |
1152 |
| |
| Base Pair (951:1230)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
12 |
21 |
5 |
0.30 |
0.02 |
0.00 |
0.02 |
0.84 |
1.00 |
1.93 |
1.35 |
0.00 |
0.78 |
6670 |
| 3 |
5 |
7 |
5 |
0.83 |
0.23 |
0.99 |
1.23 |
0.99 |
1.00 |
1.94 |
1.93 |
0.00 |
0.74 |
5364 |
| B |
2 |
2 |
3 |
1.00 |
0.53 |
1.00 |
1.53 |
1.00 |
1.00 |
1.95 |
1.97 |
0.00 |
0.72 |
4212 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.99 |
0.99 |
1.96 |
1.96 |
0.00 |
0.69 |
181 |
| C |
0 |
1 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.99 |
1.00 |
2.00 |
1.95 |
0.00 |
0.88 |
160 |
| E |
3 |
5 |
2 |
0.50 |
0.10 |
0.00 |
0.10 |
0.97 |
1.00 |
1.90 |
1.80 |
0.00 |
0.92 |
971 |
| M |
7 |
13 |
0 |
0.00 |
0.03 |
0.00 |
0.03 |
0.08 |
1.00 |
1.88 |
1.59 |
0.00 |
0.99 |
1151 |
| |
| Base Pair (952:1229)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
30 |
31 |
20 |
0.66 |
0.97 |
0.99 |
1.96 |
0.99 |
1.00 |
1.18 |
1.19 |
0.00 |
0.78 |
6654 |
| 3 |
21 |
18 |
14 |
0.72 |
0.98 |
0.99 |
1.97 |
0.99 |
1.00 |
1.11 |
1.13 |
0.00 |
0.74 |
5348 |
| B |
13 |
14 |
11 |
0.81 |
0.96 |
1.00 |
1.96 |
1.00 |
1.00 |
1.56 |
1.58 |
0.00 |
0.71 |
4195 |
| A |
2 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.97 |
0.99 |
1.85 |
1.96 |
0.00 |
0.68 |
179 |
| C |
0 |
3 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.96 |
0.99 |
2.00 |
1.75 |
0.00 |
0.88 |
160 |
| E |
6 |
4 |
3 |
0.60 |
0.37 |
0.99 |
1.36 |
0.99 |
0.99 |
1.85 |
1.85 |
0.00 |
0.92 |
973 |
| M |
9 |
10 |
6 |
0.63 |
0.76 |
0.99 |
1.75 |
0.99 |
1.00 |
1.77 |
1.75 |
0.00 |
0.99 |
1151 |
| |
| Base Pair (953:1228)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
61 |
61 |
44 |
0.72 |
0.92 |
0.98 |
1.90 |
0.98 |
0.99 |
1.10 |
1.14 |
0.00 |
0.77 |
6588 |
| 3 |
10 |
10 |
9 |
0.90 |
0.89 |
0.99 |
1.89 |
0.99 |
1.00 |
1.71 |
1.76 |
0.00 |
0.73 |
5281 |
| B |
7 |
9 |
8 |
1.00 |
0.93 |
1.00 |
1.93 |
1.00 |
1.00 |
1.70 |
1.72 |
0.00 |
0.70 |
4130 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.98 |
0.98 |
1.73 |
2.00 |
0.01 |
0.67 |
177 |
| C |
4 |
4 |
2 |
0.50 |
0.60 |
0.97 |
1.57 |
0.97 |
0.98 |
1.65 |
1.66 |
0.00 |
0.88 |
160 |
| E |
3 |
1 |
1 |
0.50 |
0.33 |
0.99 |
1.33 |
0.99 |
0.99 |
1.84 |
1.95 |
0.00 |
0.92 |
973 |
| M |
47 |
47 |
33 |
0.70 |
0.78 |
0.93 |
1.71 |
0.93 |
0.99 |
0.95 |
0.85 |
0.00 |
0.99 |
1152 |
| |
|
| Base Pair (954:1226)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
31 |
35 |
13 |
0.39 |
0.93 |
0.99 |
1.92 |
0.99 |
0.99 |
1.19 |
1.26 |
0.01 |
0.78 |
6697 |
| 3 |
5 |
6 |
1 |
0.18 |
0.13 |
0.00 |
0.13 |
0.99 |
0.99 |
1.86 |
1.96 |
0.01 |
0.74 |
5389 |
| B |
2 |
5 |
1 |
0.29 |
0.22 |
0.00 |
0.22 |
1.00 |
1.00 |
1.97 |
1.97 |
0.00 |
0.72 |
4235 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.98 |
0.99 |
1.86 |
1.91 |
0.01 |
0.68 |
181 |
| C |
2 |
2 |
1 |
0.50 |
0.10 |
0.00 |
0.10 |
0.94 |
0.98 |
1.83 |
1.75 |
0.00 |
0.89 |
161 |
| E |
3 |
1 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.99 |
0.99 |
1.54 |
1.92 |
0.05 |
0.87 |
972 |
| M |
24 |
27 |
11 |
0.43 |
0.75 |
0.96 |
1.71 |
0.96 |
0.96 |
1.18 |
1.10 |
0.00 |
0.99 |
1152 |
| |
| Base Pair (955:1225)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
60 |
64 |
39 |
0.63 |
0.95 |
0.98 |
1.94 |
0.98 |
0.99 |
0.73 |
0.77 |
0.00 |
0.78 |
6678 |
| 3 |
32 |
30 |
24 |
0.77 |
0.99 |
1.00 |
1.98 |
1.00 |
1.00 |
0.63 |
0.67 |
0.00 |
0.75 |
5372 |
| B |
22 |
22 |
19 |
0.86 |
0.99 |
1.00 |
1.98 |
1.00 |
1.00 |
0.93 |
0.98 |
0.00 |
0.72 |
4219 |
| A |
4 |
4 |
4 |
1.00 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
1.22 |
1.22 |
0.00 |
0.69 |
181 |
| C |
2 |
3 |
2 |
0.80 |
0.75 |
0.99 |
1.74 |
0.99 |
0.99 |
1.74 |
1.68 |
0.00 |
0.88 |
160 |
| E |
6 |
4 |
2 |
0.40 |
0.79 |
0.99 |
1.79 |
0.99 |
1.00 |
1.78 |
1.81 |
0.00 |
0.92 |
970 |
| M |
26 |
31 |
13 |
0.46 |
0.39 |
0.93 |
1.33 |
0.93 |
0.94 |
1.49 |
1.52 |
0.00 |
0.99 |
1151 |
| |
Last generated : Fri Jun 16 2000 (14 : 29)