23S rRNA Model Base Pair Frequencies for Helical Element 271
Base Pair (271:366)
| Collective Score |
Aln
| GC
| CG
| UA
| AU
| GU
| UG
| AA
| AC
| AG
| CA
| CC
| CU
| GA
| GG
| UC
| UU
| gap
| Seq
|
T |
3.7* |
3.7* |
1.3* |
1.8* |
0.1 |
1.8 |
0.1 |
0.3 |
0.9 |
-- |
0.1 |
-- |
0.2 |
0.6 |
2.3 |
0.8 |
82.2 | 872 |
3 |
5.4* |
6.2* |
1.9* |
2.7* |
0.2 |
2.9 |
0.2 |
0.4 |
1.2 |
-- |
0.2 |
-- |
0.2 |
1.0 |
3.9 |
1.2 |
72.6 | 518 |
B |
27.4* |
39.7* |
4.3* |
3.6* |
0.4 |
1.1 |
0.4 |
-- |
-- |
-- |
-- |
-- |
0.7 |
1.1 |
0.4 |
-- |
21.1 | 277 |
A |
22.2* |
41.7* |
13.9* |
19.4* |
-- |
2.8 |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
-- | 36 |
C |
-- |
-- |
1.0* |
1.0 |
-- |
1.0 |
-- |
1.0 |
2.0* |
-- |
-- |
-- |
-- |
-- |
-- |
1.0 |
93.0 | 100 |
E |
-- |
8.3* |
2.5 |
3.4* |
0.5 |
6.9 |
0.5 |
1.0 |
2.9 |
-- |
0.5 |
-- |
-- |
2.5 |
9.8* |
2.9 |
58.3 | 204 |
M |
1.6* |
-- |
-- |
0.4* |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
0.4 |
-- |
-- |
-- |
97.7 | 254 |
|
Base Pair (272:365)
| Collective Score |
Aln
| GC
| CG
| UA
| AU
| GU
| UG
| AA
| AC
| AG
| CA
| CC
| CU
| GA
| GG
| UC
| UU
| gap
| Seq
|
T |
0.5* |
2.4* |
1.8* |
3.9* |
0.7 |
1.3 |
0.3 |
1.4 |
0.2 |
1.5 |
0.2 |
0.2 |
0.6 |
0.7 |
0.3 |
3.3 |
80.7 | 871 |
3 |
0.8* |
3.7* |
3.1* |
6.6* |
1.0 |
1.9 |
-- |
1.7 |
0.4 |
2.5 |
0.2 |
0.4 |
1.0 |
1.2 |
0.4 |
4.6 |
70.6 | 517 |
B |
6.1* |
7.6* |
18.1* |
42.2* |
5.4 |
1.1 |
-- |
-- |
0.4 |
-- |
-- |
0.7 |
-- |
0.4 |
0.7 |
-- |
17.3 | 277 |
A |
11.1* |
52.8* |
8.3* |
22.2* |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
5.6 |
-- |
-- |
-- |
-- | 36 |
C |
-- |
1.0 |
-- |
-- |
-- |
1.0 |
2.0* |
2.0 |
-- |
-- |
1.0* |
-- |
-- |
-- |
1.0 |
2.0* |
90.0 | 100 |
E |
-- |
-- |
3.4 |
3.9 |
2.5 |
3.9 |
-- |
4.4* |
0.5 |
6.4* |
0.5 |
1.0 |
0.5 |
2.5* |
1.0 |
11.8* |
57.7 | 203 |
M |
-- |
0.4* |
-- |
-- |
0.4 |
-- |
0.4* |
0.4 |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
1.2* |
97.3 | 254 |
|
Base Pair (273:364)
| Collective Score |
Aln
| GC
| CG
| UA
| AU
| GU
| UG
| AA
| AC
| AG
| CA
| CC
| CU
| GA
| GG
| UC
| UU
| gap
| Seq
|
T |
5.4* |
2.2* |
1.1 |
1.0 |
2.9 |
0.3 |
0.5* |
0.3 |
1.3 |
0.3 |
3.8 |
0.2 |
0.1 |
0.5 |
1.3 |
1.8* |
76.7 | 870 |
3 |
9.1* |
3.5* |
1.4 |
1.2 |
4.1 |
0.4 |
0.6* |
0.4 |
2.1 |
0.6 |
6.4 |
0.4 |
-- |
0.4 |
2.1 |
2.9* |
64.6 | 516 |
B |
28.2* |
19.5* |
21.7* |
7.2* |
4.7 |
-- |
1.1 |
-- |
-- |
2.2 |
-- |
-- |
-- |
-- |
-- |
-- |
15.6 | 277 |
A |
44.4* |
41.7* |
8.3* |
-- |
-- |
5.6 |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
-- | 36 |
C |
-- |
1.0 |
2.0* |
2.0* |
1.0 |
-- |
1.0 |
1.0 |
-- |
-- |
-- |
-- |
-- |
2.0* |
-- |
-- |
90.0 | 100 |
E |
6.9 |
1.5 |
1.0* |
2.5 |
4.4* |
-- |
1.5 |
1.0 |
5.4* |
1.0 |
16.3* |
0.5 |
-- |
1.0 |
5.4 |
3.9 |
48.0 | 203 |
M |
-- |
-- |
0.4* |
0.4 |
1.2* |
0.4 |
-- |
-- |
-- |
-- |
-- |
-- |
0.4 |
-- |
-- |
0.4 |
96.9 | 254 |
|
Base Pair (274:363)
| Collective Score |
Aln
| GC
| CG
| UA
| AU
| GU
| UG
| AA
| AC
| AG
| CA
| CC
| CU
| GA
| GG
| UC
| UU
| gap
| Seq
|
T |
2.3* |
3.7* |
4.7* |
0.2* |
0.3 |
2.2 |
1.3 |
1.9 |
0.6 |
0.8 |
1.3 |
0.5 |
0.8 |
0.1 |
0.7 |
2.6 |
76.1 | 872 |
3 |
2.9 |
6.0* |
7.5* |
0.4 |
0.4* |
3.5 |
1.7 |
3.1* |
1.0 |
1.2 |
2.1 |
0.8 |
1.4 |
0.2 |
1.2 |
3.9 |
62.9 | 518 |
B |
6.9* |
26.1* |
26.8* |
18.8* |
0.4 |
5.1 |
0.7 |
-- |
-- |
-- |
-- |
-- |
0.7 |
-- |
-- |
0.4 |
14.2 | 276 |
A |
33.3* |
30.6* |
8.3* |
-- |
-- |
2.8 |
-- |
-- |
-- |
-- |
5.6 |
-- |
5.6 |
-- |
13.9 |
-- |
-- | 36 |
C |
1.0* |
1.0* |
2.0* |
-- |
-- |
-- |
2.0 |
1.0 |
-- |
1.0 |
-- |
-- |
-- |
-- |
-- |
1.0 |
91.0 | 100 |
E |
0.5 |
2.9* |
15.7* |
0.5 |
1.0* |
-- |
3.4 |
7.8* |
1.0 |
2.9 |
4.4 |
2.0 |
0.5 |
0.5 |
0.5 |
9.8 |
46.6 | 204 |
M |
1.6* |
-- |
-- |
-- |
0.4 |
0.4 |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
0.8* |
96.9 | 254 |
|
|
Base Pair (281:359)
| Collective Score |
Aln
| GC
| CG
| UA
| AU
| GU
| UG
| AA
| AC
| AG
| CA
| CC
| CU
| GA
| GG
| UC
| UU
| gap
| Seq
|
T |
6.2 |
5.6* |
3.1* |
7.4 |
4.5* |
2.8 |
1.6 |
7.5* |
0.8 |
0.6 |
0.9 |
2.0 |
0.7 |
1.5 |
0.7 |
2.5 |
51.7 | 869 |
3 |
9.7 |
8.5* |
3.5* |
8.5 |
7.4* |
4.1 |
1.9 |
12.4* |
1.4 |
0.6 |
1.6 |
3.1 |
0.6 |
2.3 |
0.6 |
2.5 |
31.4 | 516 |
B |
9.1 |
9.4* |
3.3* |
15.2 |
12.3* |
7.6 |
3.6 |
22.8* |
2.5 |
-- |
1.4 |
1.4 |
1.1 |
2.9 |
0.4 |
5.1 |
1.9 | 276 |
A |
19.4* |
33.3* |
25.0* |
8.3* |
5.6 |
-- |
-- |
-- |
-- |
-- |
2.8 |
-- |
-- |
-- |
5.6 |
-- |
-- | 36 |
C |
4.0* |
1.0* |
6.1* |
17.2* |
1.0 |
2.0 |
2.0 |
1.0 |
-- |
2.0 |
-- |
-- |
3.0 |
1.0 |
2.0 |
9.1 |
48.3 | 99 |
E |
8.8* |
3.4 |
-- |
1.0 |
1.0 |
-- |
-- |
-- |
-- |
1.5 |
1.5 |
5.9* |
-- |
2.5 |
-- |
0.5 |
74.0 | 204 |
M |
-- |
1.6* |
1.2* |
1.2* |
-- |
0.4 |
0.8 |
-- |
-- |
-- |
-- |
0.4 |
-- |
-- |
0.4 |
-- |
94.1 | 254 |
|
Base Pair (282:358)
| Collective Score |
Aln
| GC
| CG
| UA
| AU
| GU
| UG
| AA
| AC
| AG
| CA
| CC
| CU
| GA
| GG
| UC
| UU
| gap
| Seq
|
T |
3.0 |
1.8 |
4.1* |
6.2 |
0.8 |
0.9 |
2.0 |
16.9* |
4.1 |
0.5 |
1.1 |
2.6* |
0.9 |
1.5* |
1.7 |
1.6 |
50.2 | 870 |
3 |
4.8 |
2.9 |
5.8* |
7.4 |
0.8 |
1.2 |
2.1 |
26.9* |
6.6 |
0.6 |
1.9 |
3.9* |
1.2 |
2.3* |
1.7 |
0.4 |
29.7 | 517 |
B |
2.9 |
2.2* |
5.1* |
10.8 |
0.4* |
1.1 |
3.6 |
51.6* |
11.9 |
0.4 |
2.9 |
1.4 |
2.2 |
0.7 |
1.1 |
-- |
1.9 | 277 |
A |
30.6* |
13.9* |
22.2* |
11.1* |
5.6 |
-- |
-- |
2.8 |
-- |
-- |
-- |
5.6 |
-- |
5.6 |
-- |
-- |
2.8 | 36 |
C |
1.0 |
1.0* |
5.1 |
13.1* |
2.0 |
2.0 |
5.1 |
4.0 |
1.0 |
1.0 |
-- |
1.0 |
2.0* |
1.0 |
6.1* |
11.1 |
43.4 | 99 |
E |
2.9 |
2.0 |
3.9* |
0.5 |
0.5 |
1.5 |
0.5 |
0.5* |
-- |
1.0 |
1.0 |
6.9* |
-- |
3.9* |
2.9 |
1.0 |
71.1 | 204 |
M |
-- |
-- |
0.4* |
1.2 |
0.4 |
-- |
0.4 |
1.6* |
0.4 |
-- |
-- |
0.8* |
-- |
-- |
-- |
0.4 |
94.5 | 254 |
|
Base Pair (283:357)
| Collective Score |
Aln
| GC
| CG
| UA
| AU
| GU
| UG
| AA
| AC
| AG
| CA
| CC
| CU
| GA
| GG
| UC
| UU
| gap
| Seq
|
T |
3.1* |
3.7* |
10.9* |
8.6* |
6.1 |
1.0 |
1.8 |
1.3 |
1.4 |
0.9 |
1.7 |
0.9 |
1.6 |
1.5 |
1.7 |
1.6 |
51.9 | 868 |
3 |
5.2* |
6.2* |
16.5* |
12.0* |
8.9 |
1.4 |
1.0 |
1.6 |
1.6 |
1.4 |
2.1 |
1.2 |
2.1 |
2.5 |
2.5 |
1.2 |
32.7 | 515 |
B |
5.8* |
2.5* |
25.7* |
19.6* |
15.6 |
2.2 |
0.7 |
3.3 |
1.4 |
1.8 |
2.9 |
1.1 |
2.9 |
2.9 |
2.2 |
1.1 |
8.4 | 276 |
A |
22.2* |
33.3* |
19.4* |
2.8* |
-- |
-- |
-- |
-- |
5.6 |
-- |
-- |
5.6 |
2.8 |
5.6 |
2.8 |
-- |
-- | 36 |
C |
-- |
-- |
10.1* |
9.1* |
3.0 |
2.0 |
9.1 |
3.0 |
2.0 |
1.0 |
3.0* |
1.0 |
3.0 |
-- |
2.0 |
6.1 |
45.4 | 99 |
E |
2.0* |
6.4* |
3.4* |
5.4* |
1.0 |
0.5 |
1.5 |
0.5 |
1.0 |
1.0 |
1.5 |
0.5 |
1.0 |
1.5 |
3.0 |
1.5 |
68.5 | 203 |
M |
-- |
-- |
-- |
1.6* |
1.6 |
-- |
0.8 |
-- |
0.8 |
-- |
0.4* |
0.4 |
-- |
-- |
-- |
0.8 |
93.7 | 254 |
|
Base Pair (284:356)
| Collective Score |
Aln
| GC
| CG
| UA
| AU
| GU
| UG
| AA
| AC
| AG
| CA
| CC
| CU
| GA
| GG
| UC
| UU
| gap
| Seq
|
T |
5.7* |
15.1* |
4.4* |
6.3* |
3.4 |
3.8 |
2.8 |
4.3 |
1.5 |
1.6 |
2.1 |
0.8 |
0.7 |
1.4 |
3.7 |
4.1 |
38.3 | 870 |
3 |
9.5* |
24.2* |
5.0* |
8.3* |
5.4 |
4.3 |
1.9 |
6.2 |
2.1 |
2.1 |
2.9 |
1.4 |
0.8 |
1.7 |
5.2 |
4.8 |
14.2 | 517 |
B |
14.4* |
32.1* |
8.7* |
5.4* |
1.1 |
5.8 |
2.5 |
9.4 |
1.8 |
2.9 |
0.4 |
2.5 |
0.4 |
-- |
2.9 |
6.5 |
3.3 | 277 |
A |
-- |
72.2* |
2.8* |
5.6* |
2.8 |
11.1 |
-- |
-- |
-- |
5.6 |
-- |
-- |
-- |
-- |
-- |
-- |
-- | 36 |
C |
1.0 |
4.0 |
9.1 |
11.1 |
2.0* |
10.1* |
12.1* |
5.1 |
2.0 |
3.0 |
2.0* |
-- |
2.0 |
2.0 |
4.0 |
7.1 |
23.2 | 99 |
E |
4.4 |
5.4* |
1.0 |
12.7* |
11.8 |
1.0 |
1.5 |
2.9 |
2.9 |
0.5 |
6.4 |
-- |
1.5* |
4.4 |
9.3* |
3.4 |
30.9 | 204 |
M |
-- |
0.8* |
1.2 |
0.4 |
-- |
0.4 |
0.8* |
-- |
-- |
-- |
0.4 |
-- |
-- |
0.4 |
0.4 |
1.6* |
93.7 | 254 |
|
Base Pair (285:355)
| Collective Score |
Aln
| GC
| CG
| UA
| AU
| GU
| UG
| AA
| AC
| AG
| CA
| CC
| CU
| GA
| GG
| UC
| UU
| gap
| Seq
|
T |
5.4* |
8.1* |
8.3* |
8.9* |
5.3 |
2.6 |
4.8 |
1.7 |
2.5 |
3.0 |
2.1 |
1.7 |
3.0 |
2.6 |
0.3 |
3.8 |
35.8 | 872 |
3 |
8.7* |
13.5* |
11.0* |
12.1* |
8.1 |
4.0 |
4.6 |
2.5 |
3.7 |
2.7 |
3.3 |
2.7 |
4.2 |
3.5 |
0.4 |
5.0 |
10.2 | 519 |
B |
6.9* |
5.1* |
19.1* |
20.2* |
11.6 |
2.5 |
7.6 |
2.2 |
4.7 |
3.2 |
0.4 |
-- |
6.5 |
4.3 |
-- |
5.1 |
0.8 | 277 |
A |
8.3* |
58.3* |
-- |
-- |
5.6 |
2.8 |
-- |
-- |
-- |
5.6 |
8.3 |
-- |
2.8 |
5.6 |
2.8 |
-- |
-- | 36 |
C |
2.0* |
1.0* |
14.1* |
14.1* |
4.0 |
2.0 |
14.1 |
1.0 |
3.0 |
12.1 |
-- |
1.0 |
3.0 |
1.0 |
1.0 |
4.0 |
22.2 | 99 |
E |
11.2* |
17.5* |
1.9 |
3.4 |
3.9 |
6.3 |
1.5* |
3.4 |
2.9 |
1.0 |
6.3 |
6.8 |
1.5 |
1.9 |
0.5 |
5.8* |
24.4 | 206 |
M |
-- |
-- |
0.4 |
0.4 |
-- |
-- |
1.6* |
0.4 |
-- |
-- |
0.4* |
-- |
0.4 |
1.6* |
-- |
1.2* |
93.7 | 254 |
|
Base Pair (286:354)
| Collective Score |
Aln
| GC
| CG
| UA
| AU
| GU
| UG
| AA
| AC
| AG
| CA
| CC
| CU
| GA
| GG
| UC
| UU
| gap
| Seq
|
T |
4.2* |
3.6* |
6.2* |
13.2* |
3.4 |
3.6 |
2.9 |
1.4 |
1.1 |
0.8 |
0.3 |
0.7 |
3.8 |
1.4 |
1.9 |
2.8 |
48.8 | 872 |
3 |
5.4* |
6.0* |
8.1* |
18.7* |
5.2 |
5.6 |
1.4 |
1.9 |
0.8 |
0.8 |
0.4 |
0.4 |
5.8 |
1.9 |
3.1 |
2.7 |
31.8 | 518 |
B |
7.2* |
7.2* |
12.7* |
28.6* |
5.8 |
8.7 |
0.7 |
1.8 |
0.7 |
-- |
-- |
0.7 |
6.2 |
0.4 |
2.9 |
3.3 |
13.1 | 276 |
A |
8.3 |
27.8* |
2.8 |
8.3* |
16.7 |
-- |
-- |
-- |
-- |
2.8 |
-- |
-- |
25.0* |
-- |
8.3* |
-- |
-- | 36 |
C |
9.0* |
-- |
11.0 |
14.0 |
2.0 |
1.0 |
15.0* |
2.0 |
2.0 |
3.0 |
1.0 |
4.0 |
3.0 |
2.0 |
1.0 |
8.0* |
22.0 | 100 |
E |
2.4 |
0.5 |
2.9* |
7.3* |
2.4 |
2.4 |
2.4 |
2.4 |
1.0 |
1.5 |
1.0* |
-- |
1.9 |
4.4* |
2.4 |
2.4 |
62.6 | 206 |
M |
-- |
-- |
0.4* |
1.6* |
0.4 |
0.4 |
1.2 |
-- |
1.6 |
-- |
-- |
-- |
-- |
-- |
-- |
0.8 |
93.7 | 254 |
|
Base Pair (287:353)
| Collective Score |
Aln
| GC
| CG
| UA
| AU
| GU
| UG
| AA
| AC
| AG
| CA
| CC
| CU
| GA
| GG
| UC
| UU
| gap
| Seq
|
T |
7.6* |
3.9* |
8.3* |
10.7* |
4.1 |
1.8 |
7.2 |
0.9 |
1.8 |
0.7 |
1.7 |
3.1 |
2.5 |
4.1 |
0.8 |
2.4 |
38.3 | 877 |
3 |
12.4* |
6.5* |
9.4* |
14.5* |
6.5 |
3.1 |
8.2 |
1.1 |
1.5 |
0.2 |
2.9 |
4.8 |
3.4 |
6.9 |
1.0 |
2.7 |
14.9 | 523 |
B |
8.4* |
6.2* |
15.3* |
21.8* |
4.7 |
4.4 |
14.2 |
0.4 |
1.1 |
0.4 |
-- |
8.7 |
2.9 |
5.5 |
0.7 |
4.0 |
1.5 | 275 |
A |
5.6* |
38.9* |
-- |
27.8* |
-- |
11.1 |
-- |
2.8 |
-- |
-- |
5.6 |
-- |
5.6 |
-- |
-- |
2.8 |
-- | 36 |
C |
2.0* |
-- |
23.0* |
12.0* |
1.0 |
-- |
18.0 |
2.0 |
7.0 |
5.0 |
-- |
2.0 |
3.0 |
-- |
2.0 |
4.0 |
19.0 | 100 |
E |
18.9* |
1.4* |
3.3* |
2.8* |
9.9 |
-- |
1.9 |
1.9 |
2.4 |
-- |
6.1 |
0.5 |
3.8 |
9.9 |
1.4 |
0.9 |
35.0 | 212 |
M |
-- |
-- |
0.4* |
2.4* |
0.4 |
-- |
0.8 |
-- |
0.4 |
-- |
-- |
-- |
0.4 |
-- |
-- |
1.2 |
94.1 | 254 |
|
Base Pair (288:352)
| Collective Score |
Aln
| GC
| CG
| UA
| AU
| GU
| UG
| AA
| AC
| AG
| CA
| CC
| CU
| GA
| GG
| UC
| UU
| gap
| Seq
|
T |
9.0* |
4.1* |
8.1 |
7.8 |
4.2 |
3.5 |
9.7* |
2.0 |
1.4 |
2.6 |
0.6 |
0.8 |
3.4 |
5.0 |
0.5 |
2.0* |
35.1 | 879 |
3 |
12.4* |
6.7* |
11.6* |
10.5* |
6.7 |
5.5 |
11.6 |
2.5 |
2.1 |
2.3 |
1.0 |
1.0 |
5.0 |
8.4 |
0.8 |
2.1 |
10.1 | 525 |
B |
7.2 |
5.4 |
18.1 |
14.8 |
5.4 |
4.3 |
20.9* |
1.1 |
1.1 |
2.2 |
-- |
0.4* |
6.1 |
11.9* |
0.4* |
0.4 |
0.4 | 277 |
A |
11.1 |
44.4* |
5.6* |
-- |
13.9* |
2.8 |
-- |
-- |
5.6 |
2.8 |
-- |
5.6 |
5.6 |
2.8 |
-- |
-- |
-- | 36 |
C |
14.0* |
1.0* |
10.0 |
9.0 |
2.0 |
1.0 |
22.0* |
4.0 |
1.0 |
6.0 |
-- |
1.0 |
4.0 |
-- |
-- |
6.0* |
19.0 | 100 |
E |
19.3* |
1.9 |
4.2 |
6.6* |
7.1 |
7.5* |
1.4 |
4.7 |
2.8 |
2.4* |
2.4 |
0.9 |
3.3 |
4.7 |
1.4 |
4.7 |
24.6 | 212 |
M |
-- |
-- |
-- |
2.0* |
-- |
0.4* |
0.8 |
0.4 |
-- |
2.0* |
-- |
0.4 |
-- |
-- |
-- |
0.4 |
93.8 | 254 |
|
Base Pair (289:351)
| Collective Score |
Aln
| GC
| CG
| UA
| AU
| GU
| UG
| AA
| AC
| AG
| CA
| CC
| CU
| GA
| GG
| UC
| UU
| gap
| Seq
|
T |
10.6* |
7.0* |
6.6* |
6.0* |
1.5 |
4.0 |
3.8 |
4.5 |
2.5 |
2.0 |
1.9 |
1.9 |
1.8 |
2.3 |
2.5 |
1.7 |
39.5 | 885 |
3 |
16.9* |
11.5* |
8.3* |
7.2* |
1.9 |
5.6 |
3.6 |
7.0 |
3.8 |
3.2 |
3.2 |
0.9 |
2.3 |
3.8 |
1.7 |
1.9 |
17.3 | 531 |
B |
28.9* |
10.1* |
9.7* |
10.8* |
0.7 |
4.3 |
5.4 |
1.1 |
5.4 |
-- |
0.4 |
-- |
1.4 |
0.7 |
2.2 |
0.7 |
18.1 | 277 |
A |
8.3* |
8.3* |
19.4* |
13.9* |
-- |
5.6 |
5.6 |
8.3 |
-- |
13.9 |
-- |
-- |
8.3 |
-- |
-- |
2.8 |
5.6 | 36 |
C |
3.0* |
1.0 |
14.0* |
10.0 |
3.0 |
4.0 |
12.0 |
2.0 |
2.0* |
1.0 |
-- |
12.0* |
4.0 |
-- |
9.0 |
4.0 |
19.0 | 100 |
E |
3.2 |
13.8* |
4.6* |
1.4 |
3.7* |
7.3 |
0.9 |
14.2* |
2.3 |
5.5 |
7.3 |
2.3 |
2.3 |
8.3 |
1.4 |
3.2 |
18.4 | 218 |
M |
0.4 |
-- |
-- |
2.0* |
-- |
0.4 |
1.2 |
0.4 |
-- |
-- |
-- |
-- |
-- |
-- |
1.6* |
0.4 |
93.8 | 254 |
|
Base Pair (290:350)
| Collective Score |
Aln
| GC
| CG
| UA
| AU
| GU
| UG
| AA
| AC
| AG
| CA
| CC
| CU
| GA
| GG
| UC
| UU
| gap
| Seq
|
T |
7.1* |
4.5* |
13.1* |
10.5* |
3.5 |
6.2 |
3.8 |
2.3 |
1.2 |
4.6 |
0.6 |
0.6 |
1.8 |
0.7 |
0.5 |
1.7 |
37.4 | 886 |
3 |
10.2* |
7.5* |
16.9* |
12.2* |
4.9 |
10.2 |
5.3 |
3.0 |
1.7 |
7.3 |
0.8 |
0.8 |
2.6 |
0.8 |
-- |
1.7 |
14.4 | 532 |
B |
11.9* |
4.0* |
30.0* |
18.4* |
8.3 |
16.2 |
3.2 |
4.0 |
0.7 |
-- |
-- |
-- |
1.1 |
-- |
-- |
0.7 |
1.5 | 277 |
A |
25.0* |
16.7* |
8.3* |
27.8* |
-- |
5.6 |
-- |
2.8 |
5.6 |
-- |
-- |
-- |
5.6 |
2.8 |
-- |
-- |
-- | 36 |
C |
4.0* |
-- |
24.0* |
23.0* |
4.0 |
1.0 |
5.0 |
4.0 |
1.0 |
1.0 |
1.0 |
1.0 |
1.0 |
2.0 |
4.0 |
5.0 |
19.0 | 100 |
E |
5.5* |
10.5 |
1.8 |
1.8* |
1.4 |
3.2* |
8.7 |
1.8 |
2.3 |
17.8* |
1.8 |
1.8 |
4.1 |
1.4 |
-- |
3.2 |
32.9 | 219 |
M |
2.0* |
-- |
0.8* |
2.0* |
0.4 |
-- |
0.4 |
-- |
0.4 |
0.4 |
-- |
-- |
0.4 |
-- |
-- |
0.4 |
93.0 | 254 |
|
Base Pair (291:349)
| Collective Score |
Aln
| GC
| CG
| UA
| AU
| GU
| UG
| AA
| AC
| AG
| CA
| CC
| CU
| GA
| GG
| UC
| UU
| gap
| Seq
|
T |
13.1* |
12.9* |
9.0* |
5.3* |
6.8 |
4.9 |
2.1 |
0.9 |
2.6 |
0.9 |
1.2 |
0.5 |
0.9 |
1.6 |
1.7 |
1.4 |
34.2 | 884 |
3 |
18.3* |
20.6* |
12.3* |
5.5* |
10.8 |
7.7 |
2.1 |
1.1 |
4.0 |
0.9 |
1.7 |
0.8 |
0.4 |
2.5 |
1.5 |
0.9 |
9.1 | 530 |
B |
19.6* |
12.0* |
21.1* |
9.5* |
19.3 |
10.9 |
2.5 |
-- |
2.2 |
0.7 |
0.4 |
0.4 |
-- |
-- |
-- |
0.4 |
1.2 | 275 |
A |
25.0* |
16.7* |
8.3* |
-- |
2.8 |
2.8 |
-- |
2.8 |
5.6 |
-- |
2.8 |
5.6 |
-- |
-- |
22.2 |
5.6 |
-- | 36 |
C |
16.0* |
4.0* |
12.0* |
13.0* |
1.0 |
2.0 |
7.0 |
2.0 |
1.0 |
2.0 |
2.0 |
-- |
5.0 |
1.0 |
6.0 |
7.0 |
19.0 | 100 |
E |
15.5* |
32.0* |
1.8* |
1.4* |
1.4 |
4.6 |
1.8 |
2.3 |
5.9 |
1.4 |
3.2 |
0.5 |
0.9 |
5.9 |
-- |
0.9 |
20.7 | 219 |
M |
1.2* |
0.4* |
1.2* |
2.0* |
0.8 |
-- |
0.4 |
-- |
0.4 |
0.4 |
-- |
-- |
0.4 |
-- |
0.4 |
-- |
92.6 | 254 |
|
Base Pair (292:348)
| Collective Score |
Aln
| GC
| CG
| UA
| AU
| GU
| UG
| AA
| AC
| AG
| CA
| CC
| CU
| GA
| GG
| UC
| UU
| gap
| Seq
|
T |
8.7* |
7.0* |
16.6* |
8.9* |
1.4 |
4.3 |
2.7 |
0.3 |
1.0 |
1.0 |
0.3 |
1.2 |
2.3 |
7.2 |
0.6 |
2.9 |
33.5 | 887 |
3 |
14.3* |
8.6* |
22.3* |
12.9* |
2.1 |
6.0 |
3.0 |
0.4 |
0.8 |
1.5 |
0.6 |
1.7 |
2.4 |
11.3 |
0.8 |
3.4 |
8.1 | 533 |
B |
17.3* |
9.4* |
39.0* |
20.9* |
1.1 |
6.5 |
2.9 |
-- |
-- |
-- |
-- |
1.4 |
0.4 |
0.4 |
-- |
0.4 |
0.4 | 277 |
A |
27.8* |
22.2* |
5.6* |
11.1* |
-- |
-- |
-- |
-- |
2.8 |
13.9 |
2.8 |
-- |
-- |
11.1 |
2.8 |
-- |
-- | 36 |
C |
1.0* |
14.0* |
24.0* |
6.0* |
1.0 |
5.0 |
7.0 |
1.0 |
4.0 |
1.0 |
-- |
2.0 |
7.0 |
3.0 |
1.0 |
4.0 |
19.0 | 100 |
E |
8.2 |
5.5 |
4.1 |
3.2 |
3.6 |
6.4 |
3.6* |
0.9 |
1.4 |
1.4 |
0.9* |
2.3 |
5.5 |
25.0* |
1.4 |
7.7* |
19.2 | 220 |
M |
-- |
0.8* |
1.6* |
1.6* |
-- |
0.4 |
0.4 |
-- |
0.4 |
-- |
-- |
-- |
-- |
0.4 |
-- |
1.6 |
93.0 | 254 |
|
Base Pair (293:347)
| Collective Score |
Aln
| GC
| CG
| UA
| AU
| GU
| UG
| AA
| AC
| AG
| CA
| CC
| CU
| GA
| GG
| UC
| UU
| gap
| Seq
|
T |
6.1* |
1.4* |
35.2* |
2.7* |
1.1 |
2.4 |
2.8 |
1.1 |
1.5 |
2.4 |
0.6 |
1.0 |
1.8 |
1.5 |
2.1 |
1.8 |
34.7 | 888 |
3 |
10.1* |
1.9 |
50.7* |
1.5 |
1.1 |
3.7 |
2.8 |
1.3 |
2.2* |
1.9 |
0.9 |
1.5* |
2.2 |
2.2 |
3.6 |
1.7 |
10.6 | 534 |
B |
-- |
1.4 |
83.5* |
-- |
0.4* |
4.3 |
2.2 |
-- |
1.4* |
0.7 |
-- |
-- |
2.9 |
1.4 |
-- |
-- |
1.8 | 278 |
A |
-- |
2.8 |
44.4* |
-- |
2.8 |
16.7 |
19.4 |
-- |
-- |
-- |
-- |
-- |
-- |
11.1* |
-- |
-- |
2.8 | 36 |
C |
-- |
1.0 |
40.0* |
8.0* |
-- |
-- |
9.0 |
2.0 |
1.0 |
11.0 |
-- |
1.0 |
3.0 |
1.0* |
-- |
3.0 |
20.0 | 100 |
E |
24.5* |
2.3 |
10.5* |
3.6 |
1.8 |
0.9 |
0.9 |
3.2 |
3.6* |
3.6 |
2.3 |
3.6* |
1.8 |
1.8 |
8.6 |
4.1 |
22.9 | 220 |
M |
-- |
0.4* |
0.8* |
3.1* |
1.6 |
0.4 |
0.4 |
0.4 |
-- |
-- |
-- |
-- |
0.4 |
-- |
-- |
1.6 |
91.0 | 254 |
|
|
Base Pair (295:343)
| Collective Score |
Aln
| GC
| CG
| UA
| AU
| GU
| UG
| AA
| AC
| AG
| CA
| CC
| CU
| GA
| GG
| UC
| UU
| gap
| Seq
|
T |
34.5* |
3.4* |
3.8* |
6.2* |
7.0 |
3.0 |
0.5 |
0.7 |
0.3 |
0.3 |
2.5 |
3.0 |
0.3 |
0.9 |
0.2 |
2.0 |
31.2 | 887 |
3 |
49.2* |
5.1* |
3.2* |
5.4* |
8.1 |
5.1 |
0.6 |
0.9 |
0.4 |
0.6 |
4.1 |
4.9 |
0.2 |
1.5 |
0.4 |
2.4 |
8.0 | 533 |
B |
77.3* |
2.9* |
2.2* |
6.1* |
10.4 |
0.4 |
-- |
-- |
0.4 |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
0.4 | 278 |
A |
75.0* |
5.6* |
8.3* |
5.6* |
5.6 |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
-- | 36 |
C |
41.0* |
1.0* |
12.0* |
22.0* |
19.0 |
-- |
1.0 |
1.0 |
-- |
-- |
-- |
1.0 |
-- |
-- |
-- |
-- |
2.0 | 100 |
E |
9.1* |
7.8 |
3.7 |
4.6 |
5.5 |
11.9* |
1.4* |
2.3 |
0.5 |
1.4 |
10.0 |
11.9* |
0.5 |
3.7 |
0.9 |
5.9 |
19.2 | 219 |
M |
1.2* |
0.8* |
2.0* |
1.6* |
-- |
-- |
-- |
-- |
0.4 |
-- |
-- |
-- |
0.8 |
-- |
-- |
2.0 |
91.4 | 254 |
|
Base Pair (296:342)
| Collective Score |
Aln
| GC
| CG
| UA
| AU
| GU
| UG
| AA
| AC
| AG
| CA
| CC
| CU
| GA
| GG
| UC
| UU
| gap
| Seq
|
T |
6.4* |
13.9* |
14.5* |
18.6* |
3.8 |
0.8 |
0.2 |
0.2 |
0.2 |
0.6 |
1.0 |
0.7 |
0.6 |
0.2 |
0.5 |
0.7 |
37.2 | 887 |
3 |
6.8* |
22.0* |
22.5* |
18.0* |
5.4 |
1.3 |
0.2 |
0.2 |
0.2 |
0.4 |
1.7 |
1.1 |
0.6 |
0.4 |
0.6 |
0.8 |
18.0 | 533 |
B |
7.6* |
26.7* |
37.5* |
24.5* |
1.4 |
1.1 |
-- |
-- |
-- |
-- |
0.4 |
-- |
-- |
-- |
0.4 |
-- |
0.4 | 277 |
A |
11.1* |
69.4* |
16.7* |
2.8* |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
-- | 36 |
C |
21.0* |
2.0* |
2.0* |
68.0* |
5.0 |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
2.0 | 100 |
E |
5.0* |
8.2* |
4.5* |
12.3* |
11.4 |
1.8 |
0.5 |
0.5 |
0.5 |
0.9 |
3.6 |
2.7 |
1.4 |
0.9 |
0.9 |
1.8 |
43.1 | 220 |
M |
-- |
1.6* |
2.8* |
0.4* |
-- |
-- |
0.4 |
0.4 |
0.4 |
1.2 |
-- |
-- |
0.8 |
-- |
0.4 |
0.8 |
91.0 | 254 |
|
Base Pair (297:341)
| Collective Score |
Aln
| GC
| CG
| UA
| AU
| GU
| UG
| AA
| AC
| AG
| CA
| CC
| CU
| GA
| GG
| UC
| UU
| gap
| Seq
|
T |
6.9* |
19.5* |
7.7* |
8.5* |
0.1 |
8.8 |
1.2 |
0.7 |
0.3 |
0.1 |
0.3 |
0.9 |
2.4 |
0.3 |
1.2 |
0.6 |
40.4 | 887 |
3 |
11.3* |
19.3* |
8.6* |
11.8* |
-- |
13.3 |
2.1 |
1.1 |
0.6 |
-- |
0.6 |
1.5 |
3.6 |
0.4 |
1.5 |
0.9 |
23.6 | 533 |
B |
20.6* |
23.5* |
7.6* |
19.9* |
-- |
22.4 |
4.0 |
1.1 |
0.7 |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
0.4 | 277 |
A |
2.8* |
61.1* |
11.1* |
11.1* |
-- |
11.1 |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
2.8 |
-- | 36 |
C |
1.0* |
70.0* |
14.0* |
7.0* |
-- |
5.0 |
-- |
-- |
-- |
1.0 |
-- |
-- |
-- |
-- |
-- |
-- |
2.0 | 100 |
E |
0.9* |
7.3* |
9.5* |
1.8* |
-- |
2.3 |
-- |
1.4 |
0.5 |
-- |
1.4 |
3.6 |
8.6 |
0.9 |
3.6 |
1.8 |
56.5 | 220 |
M |
-- |
-- |
3.1* |
2.0* |
0.4 |
0.8 |
-- |
-- |
-- |
-- |
-- |
-- |
0.8 |
0.4* |
1.2 |
-- |
91.4 | 254 |
|
Last generated : Mon Jul 2 2001 (16 : 9)