23S rRNA Model Base Pair Collective Scoring Data for Helical Element 1648
| Base Pair (1648:2009)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
18 |
23 |
9 |
0.44 |
0.62 |
0.76 |
1.37 |
0.76 |
0.76 |
0.00 |
0.41 |
0.00 |
0.72 |
805 |
| 3 |
6 |
7 |
3 |
0.46 |
0.96 |
0.98 |
1.95 |
0.98 |
0.99 |
0.78 |
0.69 |
0.00 |
0.68 |
428 |
| B |
1 |
1 |
0 |
0.00 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
0.97 |
1.03 |
0.00 |
0.72 |
236 |
| A |
3 |
2 |
2 |
0.80 |
0.91 |
0.95 |
1.85 |
0.95 |
1.00 |
0.55 |
0.52 |
0.02 |
0.98 |
41 |
| C |
1 |
1 |
1 |
1.00 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
1.92 |
1.92 |
0.00 |
0.98 |
101 |
| E |
2 |
4 |
1 |
0.33 |
0.55 |
0.97 |
1.51 |
0.97 |
0.97 |
1.62 |
1.49 |
0.01 |
0.57 |
151 |
| M |
11 |
15 |
5 |
0.39 |
0.18 |
0.00 |
0.18 |
0.22 |
0.23 |
0.08 |
0.52 |
0.01 |
0.73 |
276 |
| |
| Base Pair (1649:2008)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
20 |
23 |
15 |
0.70 |
0.82 |
0.96 |
1.79 |
0.96 |
0.98 |
0.99 |
0.93 |
0.00 |
0.74 |
804 |
| 3 |
7 |
7 |
3 |
0.43 |
0.91 |
0.97 |
1.88 |
0.97 |
0.99 |
1.12 |
1.12 |
0.00 |
0.68 |
428 |
| B |
0 |
1 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
2.00 |
1.96 |
0.00 |
0.72 |
236 |
| A |
2 |
2 |
1 |
0.50 |
0.50 |
0.93 |
1.43 |
0.93 |
1.00 |
1.46 |
1.19 |
0.02 |
0.98 |
41 |
| C |
3 |
3 |
3 |
1.00 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
1.81 |
1.81 |
0.00 |
0.98 |
101 |
| E |
5 |
4 |
2 |
0.44 |
0.85 |
0.95 |
1.80 |
0.95 |
0.99 |
0.94 |
1.16 |
0.01 |
0.57 |
151 |
| M |
10 |
13 |
9 |
0.78 |
0.54 |
0.93 |
1.47 |
0.93 |
0.95 |
0.76 |
0.69 |
0.01 |
0.80 |
275 |
| |
| Base Pair (1650:2007)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
24 |
35 |
20 |
0.68 |
0.89 |
0.96 |
1.84 |
0.96 |
0.97 |
0.70 |
0.77 |
0.01 |
0.75 |
805 |
| 3 |
6 |
7 |
6 |
0.92 |
0.99 |
1.00 |
1.99 |
1.00 |
1.00 |
0.96 |
0.96 |
0.00 |
0.68 |
428 |
| B |
5 |
6 |
5 |
0.91 |
0.97 |
1.00 |
1.97 |
1.00 |
1.00 |
1.23 |
1.30 |
0.00 |
0.72 |
236 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
2.00 |
2.00 |
0.00 |
1.00 |
41 |
| C |
1 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.98 |
1.00 |
1.86 |
2.00 |
0.00 |
0.98 |
101 |
| E |
1 |
1 |
1 |
1.00 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
1.56 |
1.62 |
0.00 |
0.57 |
151 |
| M |
17 |
27 |
14 |
0.64 |
0.54 |
0.88 |
1.42 |
0.88 |
0.90 |
0.56 |
0.74 |
0.02 |
0.83 |
276 |
| |
| Base Pair (1651:2006)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
21 |
26 |
18 |
0.77 |
0.92 |
0.96 |
1.88 |
0.96 |
0.97 |
0.16 |
0.17 |
0.01 |
0.75 |
803 |
| 3 |
7 |
8 |
7 |
0.93 |
0.97 |
0.99 |
1.96 |
0.99 |
0.99 |
0.93 |
0.98 |
0.00 |
0.68 |
427 |
| B |
4 |
5 |
4 |
0.89 |
0.96 |
1.00 |
1.95 |
1.00 |
1.00 |
1.34 |
1.52 |
0.00 |
0.72 |
236 |
| A |
2 |
2 |
2 |
1.00 |
0.67 |
0.97 |
1.64 |
0.95 |
0.95 |
1.62 |
1.55 |
0.00 |
0.98 |
40 |
| C |
1 |
1 |
1 |
1.00 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
1.86 |
1.86 |
0.00 |
0.97 |
100 |
| E |
1 |
1 |
1 |
1.00 |
0.71 |
0.99 |
1.70 |
0.99 |
0.99 |
1.58 |
1.79 |
0.01 |
0.57 |
151 |
| M |
13 |
17 |
10 |
0.67 |
0.79 |
0.90 |
1.69 |
0.90 |
0.92 |
-0.06 |
0.14 |
0.02 |
0.83 |
276 |
| |
|
| Base Pair (1656:2004)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
44 |
52 |
28 |
0.58 |
0.47 |
0.71 |
1.18 |
0.65 |
0.68 |
0.23 |
0.19 |
0.01 |
0.76 |
802 |
| 3 |
18 |
14 |
12 |
0.75 |
0.64 |
0.84 |
1.48 |
0.70 |
0.73 |
0.62 |
0.57 |
0.00 |
0.68 |
426 |
| B |
7 |
7 |
7 |
1.00 |
1.00 |
1.00 |
2.00 |
0.99 |
1.00 |
1.46 |
1.43 |
0.00 |
0.72 |
235 |
| A |
2 |
2 |
2 |
1.00 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
0.97 |
0.95 |
0.00 |
0.98 |
40 |
| C |
2 |
2 |
2 |
1.00 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
1.62 |
1.62 |
0.00 |
0.97 |
100 |
| E |
9 |
5 |
3 |
0.43 |
0.26 |
0.79 |
1.04 |
0.15 |
0.23 |
0.69 |
1.30 |
0.00 |
0.57 |
151 |
| M |
24 |
36 |
14 |
0.47 |
0.26 |
0.49 |
0.74 |
0.45 |
0.48 |
0.54 |
0.13 |
0.02 |
0.86 |
276 |
| |
| Base Pair (1657:2003)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
49 |
52 |
31 |
0.61 |
0.88 |
0.93 |
1.81 |
0.93 |
0.97 |
0.28 |
0.21 |
0.00 |
0.77 |
803 |
| 3 |
17 |
17 |
7 |
0.41 |
0.88 |
0.93 |
1.81 |
0.93 |
0.98 |
0.47 |
0.39 |
0.00 |
0.68 |
427 |
| B |
12 |
12 |
4 |
0.33 |
0.64 |
0.90 |
1.53 |
0.90 |
0.98 |
1.14 |
0.94 |
0.00 |
0.72 |
235 |
| A |
4 |
2 |
2 |
0.67 |
0.57 |
0.93 |
1.50 |
0.93 |
1.00 |
1.24 |
1.46 |
0.00 |
1.00 |
41 |
| C |
1 |
1 |
1 |
1.00 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
1.92 |
1.92 |
0.00 |
0.97 |
100 |
| E |
1 |
3 |
1 |
0.50 |
0.33 |
0.97 |
1.31 |
0.97 |
0.99 |
1.86 |
1.77 |
0.00 |
0.57 |
151 |
| M |
31 |
34 |
23 |
0.71 |
0.86 |
0.92 |
1.78 |
0.92 |
0.95 |
0.09 |
0.13 |
0.01 |
0.88 |
276 |
| |
| Base Pair (1658:2002)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
46 |
52 |
38 |
0.78 |
0.91 |
0.94 |
1.85 |
0.94 |
0.97 |
0.18 |
0.18 |
0.00 |
0.77 |
803 |
| 3 |
21 |
21 |
17 |
0.81 |
0.91 |
0.95 |
1.86 |
0.95 |
0.99 |
0.39 |
0.35 |
0.00 |
0.68 |
427 |
| B |
12 |
10 |
8 |
0.73 |
0.95 |
0.98 |
1.93 |
0.98 |
0.98 |
0.68 |
0.61 |
0.00 |
0.72 |
235 |
| A |
4 |
4 |
4 |
1.00 |
0.67 |
0.88 |
1.54 |
0.88 |
1.00 |
0.48 |
0.63 |
0.00 |
1.00 |
41 |
| C |
1 |
1 |
1 |
1.00 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
1.81 |
1.81 |
0.00 |
0.97 |
100 |
| E |
5 |
7 |
5 |
0.83 |
0.66 |
0.93 |
1.58 |
0.93 |
0.99 |
1.36 |
1.24 |
0.00 |
0.57 |
151 |
| M |
24 |
30 |
20 |
0.74 |
0.77 |
0.91 |
1.68 |
0.91 |
0.94 |
0.47 |
0.45 |
0.00 |
0.88 |
276 |
| |
| Base Pair (1659:2001)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
49 |
55 |
34 |
0.65 |
0.90 |
0.94 |
1.84 |
0.94 |
0.96 |
0.42 |
0.36 |
0.00 |
0.77 |
804 |
| 3 |
24 |
26 |
19 |
0.76 |
0.97 |
0.98 |
1.95 |
0.98 |
0.99 |
0.29 |
0.23 |
0.00 |
0.68 |
428 |
| B |
14 |
17 |
12 |
0.77 |
0.94 |
0.98 |
1.92 |
0.98 |
1.00 |
0.64 |
0.57 |
0.00 |
0.72 |
236 |
| A |
7 |
6 |
6 |
0.92 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
0.70 |
0.54 |
0.05 |
0.95 |
41 |
| C |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
2.00 |
2.00 |
0.00 |
0.97 |
100 |
| E |
3 |
3 |
1 |
0.33 |
0.67 |
0.98 |
1.65 |
0.98 |
0.99 |
1.68 |
1.65 |
0.00 |
0.57 |
151 |
| M |
25 |
29 |
15 |
0.56 |
0.77 |
0.87 |
1.64 |
0.87 |
0.88 |
0.49 |
0.43 |
0.00 |
0.88 |
276 |
| |
| Base Pair (1660:2000)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
49 |
52 |
36 |
0.71 |
0.89 |
0.94 |
1.83 |
0.94 |
0.96 |
0.36 |
0.32 |
0.00 |
0.77 |
804 |
| 3 |
17 |
17 |
12 |
0.71 |
0.90 |
0.96 |
1.87 |
0.96 |
0.99 |
0.71 |
0.65 |
0.00 |
0.68 |
428 |
| B |
11 |
12 |
9 |
0.78 |
0.96 |
0.98 |
1.94 |
0.98 |
1.00 |
0.57 |
0.47 |
0.00 |
0.72 |
236 |
| A |
1 |
1 |
1 |
1.00 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
1.29 |
1.29 |
0.00 |
1.00 |
41 |
| C |
2 |
2 |
2 |
1.00 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
1.76 |
1.76 |
0.00 |
0.97 |
100 |
| E |
5 |
4 |
2 |
0.44 |
0.52 |
0.93 |
1.46 |
0.93 |
0.97 |
1.41 |
1.43 |
0.00 |
0.57 |
151 |
| M |
30 |
33 |
22 |
0.70 |
0.79 |
0.90 |
1.69 |
0.90 |
0.92 |
0.31 |
0.37 |
0.00 |
0.88 |
276 |
| |
| Base Pair (1661:1999)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
53 |
56 |
31 |
0.57 |
0.78 |
0.86 |
1.65 |
0.86 |
0.95 |
0.26 |
0.17 |
0.00 |
0.77 |
804 |
| 3 |
20 |
21 |
11 |
0.54 |
0.62 |
0.84 |
1.46 |
0.84 |
0.98 |
0.66 |
0.48 |
0.00 |
0.68 |
428 |
| B |
9 |
11 |
7 |
0.70 |
0.91 |
0.98 |
1.90 |
0.98 |
0.99 |
0.98 |
1.09 |
0.00 |
0.72 |
236 |
| A |
3 |
2 |
2 |
0.80 |
0.92 |
0.98 |
1.90 |
0.98 |
0.98 |
0.85 |
0.94 |
0.00 |
1.00 |
41 |
| C |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
2.00 |
2.00 |
0.00 |
0.97 |
100 |
| E |
8 |
8 |
2 |
0.25 |
0.10 |
0.00 |
0.10 |
0.59 |
0.97 |
0.77 |
0.85 |
0.00 |
0.57 |
151 |
| M |
33 |
35 |
20 |
0.59 |
0.75 |
0.85 |
1.60 |
0.85 |
0.88 |
0.09 |
0.16 |
0.00 |
0.88 |
276 |
| |
| Base Pair (1662:1998)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
35 |
36 |
29 |
0.82 |
0.96 |
0.98 |
1.94 |
0.98 |
0.98 |
0.26 |
0.27 |
0.00 |
0.77 |
804 |
| 3 |
12 |
13 |
11 |
0.88 |
0.96 |
0.99 |
1.95 |
0.99 |
0.99 |
1.07 |
1.02 |
0.00 |
0.68 |
428 |
| B |
8 |
9 |
8 |
0.94 |
0.95 |
0.99 |
1.95 |
0.99 |
1.00 |
1.22 |
1.14 |
0.00 |
0.72 |
236 |
| A |
1 |
1 |
1 |
1.00 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
1.16 |
1.16 |
0.00 |
1.00 |
41 |
| C |
2 |
2 |
2 |
1.00 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
1.72 |
1.71 |
0.00 |
0.97 |
100 |
| E |
3 |
3 |
2 |
0.67 |
0.94 |
0.99 |
1.92 |
0.99 |
0.99 |
1.27 |
1.18 |
0.00 |
0.57 |
151 |
| M |
21 |
21 |
16 |
0.76 |
0.90 |
0.95 |
1.85 |
0.95 |
0.96 |
0.43 |
0.52 |
0.00 |
0.88 |
276 |
| |
| Base Pair (1663:1997)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
38 |
55 |
26 |
0.56 |
0.74 |
0.83 |
1.57 |
0.83 |
0.95 |
0.26 |
0.08 |
0.00 |
0.77 |
804 |
| 3 |
16 |
19 |
9 |
0.51 |
0.95 |
0.97 |
1.92 |
0.97 |
1.00 |
0.22 |
0.16 |
0.00 |
0.68 |
428 |
| B |
8 |
11 |
2 |
0.21 |
0.89 |
0.95 |
1.83 |
0.95 |
1.00 |
0.76 |
0.59 |
0.00 |
0.72 |
236 |
| A |
6 |
6 |
6 |
1.00 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
0.14 |
0.14 |
0.00 |
1.00 |
41 |
| C |
1 |
12 |
2 |
0.31 |
0.00 |
0.00 |
0.00 |
0.19 |
0.97 |
1.86 |
1.13 |
0.00 |
0.97 |
100 |
| E |
2 |
2 |
1 |
0.50 |
0.86 |
0.99 |
1.85 |
0.99 |
0.99 |
1.71 |
1.68 |
0.00 |
0.57 |
151 |
| M |
21 |
24 |
15 |
0.67 |
0.70 |
0.84 |
1.54 |
0.84 |
0.86 |
0.48 |
0.50 |
0.00 |
0.88 |
276 |
| |
|
| Base Pair (1665:1995)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
6 |
7 |
4 |
0.61 |
0.98 |
0.99 |
1.97 |
0.99 |
0.99 |
1.13 |
1.16 |
0.00 |
0.77 |
805 |
| 3 |
0 |
1 |
1 |
1.00 |
0.99 |
0.99 |
1.99 |
0.99 |
0.99 |
0.99 |
0.99 |
0.00 |
0.68 |
428 |
| B |
0 |
1 |
1 |
1.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
1.96 |
1.96 |
0.00 |
0.72 |
236 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
2.00 |
2.00 |
0.00 |
1.00 |
41 |
| C |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
2.00 |
2.00 |
0.00 |
0.98 |
101 |
| E |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.99 |
0.99 |
1.88 |
2.00 |
0.00 |
0.57 |
151 |
| M |
5 |
5 |
3 |
0.60 |
0.80 |
0.99 |
1.79 |
0.99 |
0.99 |
1.63 |
1.72 |
0.00 |
0.88 |
276 |
| |
| Base Pair (1666:1994)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
6 |
12 |
6 |
0.67 |
0.71 |
0.99 |
1.70 |
0.99 |
1.00 |
1.77 |
1.75 |
0.00 |
0.77 |
805 |
| 3 |
1 |
1 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.99 |
0.99 |
1.95 |
1.98 |
0.00 |
0.68 |
428 |
| B |
0 |
1 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
2.00 |
1.96 |
0.00 |
0.72 |
236 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
2.00 |
2.00 |
0.00 |
1.00 |
41 |
| C |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
2.00 |
2.00 |
0.00 |
0.98 |
101 |
| E |
1 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.99 |
0.99 |
1.88 |
2.00 |
0.00 |
0.57 |
151 |
| M |
5 |
11 |
6 |
0.75 |
0.77 |
0.98 |
1.75 |
0.98 |
1.00 |
1.51 |
1.47 |
0.01 |
0.88 |
276 |
| |
| Base Pair (1667:1993)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
4 |
6 |
2 |
0.40 |
0.50 |
0.99 |
1.49 |
0.02 |
0.99 |
1.81 |
1.87 |
0.00 |
0.77 |
807 |
| 3 |
1 |
1 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.01 |
1.00 |
1.96 |
1.98 |
0.00 |
0.68 |
430 |
| B |
0 |
1 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.96 |
1.96 |
0.00 |
0.72 |
236 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
2.00 |
2.00 |
0.00 |
1.00 |
41 |
| C |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
2.00 |
2.00 |
0.00 |
0.98 |
101 |
| E |
1 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.01 |
1.00 |
1.95 |
2.00 |
0.00 |
0.58 |
153 |
| M |
3 |
5 |
2 |
0.50 |
0.59 |
0.97 |
1.56 |
0.05 |
0.99 |
1.57 |
1.73 |
0.01 |
0.88 |
276 |
| |
Last generated : Mon Jul 2 2001 (16 : 9)