23S rRNA Model Base Pair Collective Scoring Data for Helical Element 2127
| Base Pair (2127:2161)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
10 |
14 |
7 |
0.58 |
0.45 |
0.97 |
1.42 |
0.97 |
0.99 |
0.28 |
0.22 |
0.00 |
0.55 |
847 |
| 3 |
3 |
6 |
1 |
0.22 |
0.20 |
0.00 |
0.20 |
0.98 |
0.99 |
1.80 |
1.74 |
0.00 |
0.69 |
437 |
| B |
0 |
2 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.99 |
1.00 |
2.00 |
1.93 |
0.00 |
0.74 |
241 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
2.00 |
2.00 |
0.00 |
1.00 |
41 |
| C |
2 |
4 |
2 |
0.67 |
0.57 |
0.97 |
1.54 |
0.97 |
1.00 |
1.76 |
1.64 |
0.00 |
0.98 |
101 |
| E |
3 |
4 |
1 |
0.29 |
0.25 |
0.96 |
1.21 |
0.96 |
0.98 |
1.53 |
1.46 |
0.00 |
0.57 |
155 |
| M |
5 |
4 |
4 |
0.89 |
0.57 |
0.85 |
1.43 |
0.85 |
0.95 |
-0.43 |
-0.49 |
0.00 |
0.13 |
309 |
| |
| Base Pair (2128:2160)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
36 |
39 |
33 |
0.88 |
0.96 |
0.98 |
1.94 |
0.98 |
0.99 |
-0.74 |
-0.73 |
0.00 |
0.54 |
847 |
| 3 |
30 |
32 |
28 |
0.90 |
0.97 |
0.98 |
1.96 |
0.98 |
0.99 |
0.11 |
0.14 |
0.00 |
0.68 |
437 |
| B |
16 |
17 |
14 |
0.85 |
0.99 |
0.99 |
1.98 |
0.99 |
1.00 |
0.39 |
0.39 |
0.00 |
0.74 |
241 |
| A |
2 |
3 |
4 |
1.00 |
0.96 |
0.97 |
1.93 |
0.97 |
1.00 |
0.33 |
0.08 |
0.02 |
0.98 |
41 |
| C |
2 |
3 |
2 |
0.80 |
0.67 |
0.99 |
1.66 |
0.99 |
1.00 |
1.86 |
1.71 |
0.01 |
0.97 |
101 |
| E |
12 |
12 |
10 |
0.83 |
0.93 |
0.97 |
1.91 |
0.97 |
0.99 |
0.10 |
0.20 |
0.00 |
0.55 |
155 |
| M |
4 |
4 |
3 |
0.75 |
0.77 |
0.88 |
1.65 |
0.88 |
0.90 |
-0.52 |
-0.55 |
0.00 |
0.13 |
309 |
| |
| Base Pair (2129:2159)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
16 |
12 |
5 |
0.36 |
0.74 |
0.96 |
1.71 |
0.96 |
0.99 |
-0.26 |
-0.18 |
0.00 |
0.48 |
845 |
| 3 |
11 |
8 |
2 |
0.21 |
0.79 |
0.97 |
1.76 |
0.97 |
0.99 |
0.46 |
0.55 |
0.00 |
0.59 |
435 |
| B |
2 |
1 |
0 |
0.00 |
0.67 |
1.00 |
1.66 |
1.00 |
1.00 |
1.89 |
1.93 |
0.00 |
0.73 |
239 |
| A |
2 |
2 |
1 |
0.50 |
0.73 |
0.93 |
1.65 |
0.93 |
1.00 |
0.81 |
1.04 |
0.00 |
1.00 |
41 |
| C |
2 |
1 |
1 |
0.67 |
0.67 |
0.99 |
1.66 |
0.99 |
1.00 |
1.81 |
1.86 |
0.00 |
0.98 |
101 |
| E |
7 |
5 |
1 |
0.17 |
0.82 |
0.92 |
1.74 |
0.92 |
0.98 |
-0.69 |
-0.60 |
0.00 |
0.35 |
155 |
| M |
3 |
3 |
2 |
0.67 |
0.63 |
0.79 |
1.42 |
0.79 |
0.97 |
-0.43 |
-0.44 |
0.01 |
0.11 |
309 |
| |
|
| Base Pair (2136:2155)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
41 |
44 |
17 |
0.40 |
0.27 |
0.57 |
0.84 |
0.49 |
0.91 |
-0.82 |
-0.71 |
0.01 |
0.37 |
847 |
| 3 |
30 |
26 |
10 |
0.36 |
0.32 |
0.62 |
0.94 |
0.47 |
0.91 |
-0.69 |
-0.45 |
0.01 |
0.45 |
437 |
| B |
24 |
21 |
7 |
0.31 |
0.24 |
0.60 |
0.84 |
0.46 |
0.93 |
0.42 |
0.93 |
0.00 |
0.74 |
241 |
| A |
6 |
5 |
3 |
0.55 |
0.56 |
0.76 |
1.32 |
0.54 |
0.81 |
0.47 |
0.51 |
0.00 |
1.00 |
41 |
| C |
9 |
16 |
5 |
0.40 |
0.11 |
0.00 |
0.11 |
0.51 |
0.89 |
0.46 |
0.33 |
0.00 |
0.96 |
101 |
| E |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
-0.04 |
-0.15 |
0.01 |
0.00 |
155 |
| M |
2 |
2 |
2 |
1.00 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
-0.13 |
-0.16 |
0.01 |
0.02 |
309 |
| |
| Base Pair (2137:2154)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
38 |
39 |
29 |
0.75 |
0.86 |
0.93 |
1.79 |
0.93 |
0.97 |
-0.87 |
-0.86 |
0.00 |
0.37 |
846 |
| 3 |
23 |
24 |
18 |
0.77 |
0.85 |
0.95 |
1.80 |
0.95 |
0.96 |
-0.44 |
-0.49 |
0.00 |
0.45 |
436 |
| B |
21 |
21 |
17 |
0.81 |
0.94 |
0.98 |
1.92 |
0.98 |
0.99 |
0.76 |
0.75 |
0.00 |
0.74 |
240 |
| A |
2 |
3 |
1 |
0.40 |
0.60 |
0.90 |
1.50 |
0.81 |
0.81 |
1.13 |
1.08 |
0.00 |
1.00 |
41 |
| C |
14 |
14 |
11 |
0.79 |
0.78 |
0.90 |
1.68 |
0.90 |
1.00 |
0.43 |
0.53 |
0.00 |
0.96 |
101 |
| E |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
-0.04 |
-0.07 |
0.00 |
0.00 |
155 |
| M |
1 |
1 |
0 |
0.00 |
0.50 |
0.71 |
1.21 |
0.71 |
1.00 |
-0.14 |
-0.15 |
0.00 |
0.02 |
309 |
| |
| Base Pair (2138:2153)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
53 |
55 |
29 |
0.54 |
0.74 |
0.82 |
1.56 |
0.82 |
0.96 |
-0.96 |
-0.93 |
0.00 |
0.37 |
847 |
| 3 |
41 |
39 |
24 |
0.60 |
0.78 |
0.87 |
1.65 |
0.87 |
0.96 |
-0.88 |
-0.79 |
0.00 |
0.45 |
437 |
| B |
36 |
34 |
22 |
0.63 |
0.83 |
0.90 |
1.72 |
0.90 |
0.99 |
0.11 |
0.23 |
0.00 |
0.74 |
241 |
| A |
5 |
4 |
2 |
0.44 |
0.56 |
0.73 |
1.29 |
0.73 |
0.83 |
0.24 |
0.21 |
0.00 |
1.00 |
41 |
| C |
10 |
16 |
5 |
0.39 |
0.46 |
0.72 |
1.18 |
0.72 |
0.97 |
0.71 |
0.37 |
0.01 |
0.95 |
101 |
| E |
0 |
1 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
-0.04 |
-0.09 |
0.00 |
0.00 |
155 |
| M |
2 |
0 |
0 |
0.00 |
0.25 |
0.57 |
0.82 |
0.43 |
0.57 |
-0.14 |
-0.14 |
0.00 |
0.02 |
309 |
| |
| Base Pair (2139:2152)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
44 |
46 |
27 |
0.60 |
0.70 |
0.78 |
1.48 |
0.78 |
0.99 |
-0.93 |
-0.99 |
0.00 |
0.37 |
847 |
| 3 |
32 |
31 |
16 |
0.51 |
0.58 |
0.72 |
1.31 |
0.72 |
0.99 |
-0.81 |
-0.87 |
0.00 |
0.45 |
437 |
| B |
28 |
28 |
14 |
0.50 |
0.45 |
0.64 |
1.09 |
0.69 |
0.99 |
0.30 |
0.10 |
0.00 |
0.74 |
241 |
| A |
4 |
3 |
2 |
0.57 |
0.86 |
0.93 |
1.78 |
0.93 |
1.00 |
0.20 |
0.37 |
0.00 |
1.00 |
41 |
| C |
11 |
13 |
10 |
0.83 |
0.83 |
0.93 |
1.76 |
0.93 |
0.99 |
0.31 |
0.34 |
0.02 |
0.94 |
101 |
| E |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
-0.04 |
-0.07 |
0.00 |
0.00 |
155 |
| M |
1 |
2 |
1 |
0.67 |
0.50 |
0.86 |
1.36 |
0.71 |
0.71 |
-0.12 |
-0.13 |
0.00 |
0.02 |
309 |
| |
| Base Pair (2140:2151)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
39 |
46 |
23 |
0.54 |
0.54 |
0.70 |
1.24 |
0.57 |
0.99 |
-0.89 |
-0.93 |
0.00 |
0.37 |
847 |
| 3 |
26 |
31 |
15 |
0.53 |
0.43 |
0.70 |
1.13 |
0.46 |
0.99 |
-0.61 |
-0.73 |
0.00 |
0.45 |
437 |
| B |
21 |
26 |
12 |
0.51 |
0.36 |
0.70 |
1.06 |
0.39 |
1.00 |
0.62 |
0.44 |
0.00 |
0.74 |
241 |
| A |
5 |
4 |
3 |
0.67 |
0.75 |
0.88 |
1.63 |
0.88 |
1.00 |
0.57 |
0.42 |
0.00 |
1.00 |
41 |
| C |
13 |
15 |
8 |
0.57 |
0.79 |
0.88 |
1.67 |
0.88 |
0.97 |
0.07 |
0.04 |
0.00 |
0.94 |
101 |
| E |
0 |
1 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
-0.04 |
-0.12 |
0.01 |
0.00 |
155 |
| M |
0 |
0 |
0 |
0.00 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
-0.14 |
-0.14 |
0.00 |
0.02 |
309 |
| |
| Base Pair (2141:2150)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
44 |
47 |
29 |
0.64 |
0.51 |
0.66 |
1.17 |
0.76 |
0.99 |
-0.95 |
-0.94 |
0.00 |
0.37 |
847 |
| 3 |
30 |
33 |
15 |
0.48 |
0.38 |
0.56 |
0.93 |
0.68 |
0.98 |
-0.79 |
-0.78 |
0.00 |
0.45 |
437 |
| B |
23 |
27 |
8 |
0.32 |
0.30 |
0.53 |
0.83 |
0.65 |
0.99 |
0.32 |
0.36 |
0.00 |
0.74 |
241 |
| A |
7 |
6 |
7 |
1.00 |
0.77 |
0.90 |
1.67 |
0.90 |
0.98 |
0.66 |
0.56 |
0.00 |
1.00 |
41 |
| C |
12 |
12 |
12 |
1.00 |
0.92 |
0.97 |
1.89 |
0.97 |
1.00 |
0.41 |
0.45 |
0.00 |
0.94 |
101 |
| E |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
-0.04 |
-0.12 |
0.01 |
0.00 |
155 |
| M |
2 |
2 |
2 |
1.00 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
-0.15 |
-0.15 |
0.00 |
0.02 |
309 |
| |
| Base Pair (2142:2149)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
31 |
25 |
16 |
0.57 |
0.77 |
0.84 |
1.61 |
0.84 |
0.99 |
-0.98 |
-0.87 |
0.01 |
0.37 |
847 |
| 3 |
20 |
16 |
8 |
0.44 |
0.76 |
0.86 |
1.62 |
0.82 |
1.00 |
-0.81 |
-0.69 |
0.01 |
0.45 |
437 |
| B |
15 |
14 |
8 |
0.55 |
0.81 |
0.90 |
1.71 |
0.86 |
1.00 |
0.38 |
0.45 |
0.00 |
0.74 |
241 |
| A |
5 |
1 |
0 |
0.00 |
0.35 |
0.63 |
0.98 |
0.56 |
1.00 |
0.49 |
1.29 |
0.00 |
1.00 |
41 |
| C |
9 |
8 |
7 |
0.82 |
0.65 |
0.93 |
1.58 |
0.93 |
1.00 |
0.80 |
1.01 |
0.00 |
0.94 |
101 |
| E |
0 |
1 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
-0.04 |
-0.25 |
0.02 |
0.00 |
155 |
| M |
2 |
1 |
1 |
0.67 |
0.33 |
0.71 |
1.05 |
0.71 |
0.86 |
-0.14 |
-0.12 |
0.00 |
0.02 |
309 |
| |
| Base Pair (2143:2148)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
8 |
3 |
1 |
0.18 |
0.02 |
0.00 |
0.02 |
0.70 |
1.00 |
-0.51 |
-0.16 |
0.00 |
0.37 |
848 |
| 3 |
7 |
2 |
0 |
0.00 |
0.06 |
0.00 |
0.06 |
0.94 |
1.00 |
0.15 |
0.26 |
0.01 |
0.45 |
438 |
| B |
4 |
1 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.97 |
1.00 |
1.81 |
1.81 |
0.01 |
0.73 |
242 |
| A |
3 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.81 |
1.00 |
1.29 |
2.00 |
0.00 |
1.00 |
41 |
| C |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.62 |
1.62 |
0.00 |
0.93 |
101 |
| E |
0 |
1 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
-0.04 |
-0.29 |
0.03 |
0.00 |
155 |
| M |
1 |
1 |
1 |
1.00 |
0.50 |
0.86 |
1.36 |
0.86 |
1.00 |
-0.14 |
-0.13 |
0.00 |
0.02 |
309 |
| |
| Base Pair (2144:2147) (Tertiary)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
27 |
21 |
14 |
0.58 |
0.76 |
0.89 |
1.65 |
0.07 |
0.43 |
-0.57 |
-0.49 |
0.00 |
0.51 |
848 |
| 3 |
18 |
16 |
10 |
0.59 |
0.72 |
0.91 |
1.63 |
0.08 |
0.31 |
0.32 |
0.40 |
0.01 |
0.63 |
438 |
| B |
3 |
3 |
2 |
0.67 |
0.73 |
0.98 |
1.72 |
0.02 |
0.06 |
1.64 |
1.70 |
0.00 |
0.74 |
242 |
| A |
2 |
2 |
2 |
1.00 |
1.00 |
1.00 |
2.00 |
0.00 |
0.73 |
1.16 |
1.16 |
0.00 |
1.00 |
41 |
| C |
2 |
1 |
1 |
0.67 |
0.00 |
0.00 |
0.00 |
0.01 |
0.94 |
1.78 |
1.72 |
0.00 |
0.98 |
101 |
| E |
13 |
11 |
6 |
0.50 |
0.47 |
0.70 |
1.17 |
0.24 |
0.70 |
-0.51 |
-0.26 |
0.01 |
0.43 |
155 |
| M |
7 |
4 |
3 |
0.55 |
0.32 |
0.56 |
0.88 |
0.18 |
0.21 |
-0.53 |
-0.42 |
0.01 |
0.11 |
309 |
| |
Last generated : Mon Jul 2 2001 (16 : 9)