23S rRNA Model Base Pair Collective Scoring Data for Helical Element 687
| Base Pair (687:775)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
11 |
7 |
0 |
0.00 |
0.29 |
0.97 |
1.27 |
0.97 |
0.98 |
1.72 |
1.80 |
0.00 |
0.84 |
886 |
| 3 |
2 |
1 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.99 |
0.99 |
1.96 |
1.94 |
0.00 |
0.83 |
524 |
| B |
0 |
1 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.99 |
0.99 |
2.00 |
1.93 |
0.00 |
0.86 |
282 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
2.00 |
2.00 |
0.00 |
0.90 |
37 |
| C |
1 |
2 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.95 |
0.95 |
1.86 |
1.81 |
0.00 |
0.97 |
100 |
| E |
2 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.99 |
0.99 |
1.92 |
1.95 |
0.00 |
0.78 |
205 |
| M |
8 |
4 |
0 |
0.00 |
0.40 |
0.94 |
1.34 |
0.94 |
0.98 |
1.34 |
1.62 |
0.01 |
0.83 |
262 |
| |
| Base Pair (688:774)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
4 |
14 |
3 |
0.33 |
0.17 |
0.00 |
0.17 |
0.93 |
0.96 |
1.84 |
1.42 |
0.00 |
0.85 |
886 |
| 3 |
0 |
7 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.90 |
0.95 |
2.00 |
1.40 |
0.00 |
0.83 |
524 |
| B |
0 |
4 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.89 |
0.98 |
2.00 |
1.41 |
0.00 |
0.86 |
282 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
2.00 |
2.00 |
0.00 |
0.90 |
37 |
| C |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
2.00 |
2.00 |
0.00 |
0.97 |
100 |
| E |
0 |
3 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.89 |
0.90 |
2.00 |
1.42 |
0.00 |
0.78 |
205 |
| M |
4 |
7 |
3 |
0.55 |
0.54 |
0.96 |
1.50 |
0.96 |
0.98 |
1.56 |
1.41 |
0.01 |
0.83 |
262 |
| |
| Base Pair (689:773)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
9 |
7 |
5 |
0.62 |
0.73 |
0.99 |
1.72 |
0.99 |
0.99 |
1.74 |
1.78 |
0.00 |
0.85 |
887 |
| 3 |
1 |
2 |
1 |
0.67 |
0.67 |
1.00 |
1.67 |
1.00 |
1.00 |
1.96 |
1.94 |
0.00 |
0.83 |
524 |
| B |
0 |
1 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
2.00 |
1.97 |
0.00 |
0.86 |
282 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
2.00 |
2.00 |
0.00 |
0.90 |
37 |
| C |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
2.00 |
2.00 |
0.00 |
0.97 |
100 |
| E |
1 |
1 |
1 |
1.00 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
1.92 |
1.92 |
0.00 |
0.78 |
205 |
| M |
8 |
5 |
4 |
0.61 |
0.73 |
0.97 |
1.70 |
0.97 |
0.98 |
1.35 |
1.47 |
0.00 |
0.84 |
263 |
| |
| Base Pair (690:772)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
50 |
52 |
37 |
0.72 |
0.90 |
0.94 |
1.84 |
0.94 |
0.97 |
0.17 |
0.15 |
0.00 |
0.85 |
885 |
| 3 |
24 |
29 |
16 |
0.60 |
0.86 |
0.94 |
1.80 |
0.94 |
0.99 |
0.53 |
0.41 |
0.00 |
0.83 |
522 |
| B |
17 |
20 |
10 |
0.54 |
0.85 |
0.91 |
1.76 |
0.91 |
0.98 |
0.38 |
0.21 |
0.00 |
0.86 |
280 |
| A |
2 |
3 |
1 |
0.40 |
0.77 |
0.92 |
1.69 |
0.92 |
1.00 |
0.92 |
0.55 |
0.00 |
0.90 |
37 |
| C |
7 |
5 |
5 |
0.83 |
0.60 |
0.88 |
1.48 |
0.88 |
0.89 |
0.89 |
1.15 |
0.00 |
0.97 |
100 |
| E |
5 |
6 |
5 |
0.91 |
0.86 |
0.99 |
1.85 |
0.99 |
0.99 |
1.60 |
1.49 |
0.00 |
0.78 |
205 |
| M |
19 |
18 |
16 |
0.86 |
0.91 |
0.96 |
1.87 |
0.96 |
0.98 |
0.46 |
0.48 |
0.00 |
0.84 |
263 |
| |
| Base Pair (691:771)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
55 |
54 |
47 |
0.86 |
0.86 |
0.93 |
1.79 |
0.76 |
0.99 |
0.29 |
0.33 |
0.00 |
0.85 |
887 |
| 3 |
20 |
19 |
14 |
0.72 |
0.89 |
0.94 |
1.82 |
0.61 |
1.00 |
0.39 |
0.41 |
0.00 |
0.83 |
524 |
| B |
10 |
9 |
8 |
0.84 |
0.97 |
0.99 |
1.96 |
0.99 |
1.00 |
1.11 |
1.07 |
0.00 |
0.86 |
282 |
| A |
6 |
5 |
5 |
0.91 |
0.68 |
0.84 |
1.52 |
0.51 |
1.00 |
0.24 |
0.55 |
0.00 |
0.90 |
37 |
| C |
9 |
9 |
9 |
1.00 |
0.97 |
0.99 |
1.96 |
0.99 |
1.00 |
0.96 |
0.94 |
0.00 |
0.97 |
100 |
| E |
4 |
5 |
1 |
0.22 |
0.04 |
0.00 |
0.04 |
0.11 |
0.99 |
1.66 |
1.65 |
0.00 |
0.78 |
205 |
| M |
26 |
26 |
24 |
0.92 |
0.94 |
0.97 |
1.91 |
0.97 |
0.99 |
0.55 |
0.57 |
0.00 |
0.84 |
263 |
| |
| Base Pair (692:770)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
39 |
33 |
20 |
0.56 |
0.53 |
0.88 |
1.41 |
0.88 |
0.96 |
1.08 |
1.14 |
0.00 |
0.85 |
887 |
| 3 |
6 |
2 |
2 |
0.50 |
0.03 |
0.00 |
0.03 |
0.88 |
1.00 |
1.45 |
1.92 |
0.00 |
0.83 |
524 |
| B |
3 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.79 |
1.00 |
1.25 |
1.96 |
0.00 |
0.86 |
282 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
2.00 |
2.00 |
0.00 |
0.90 |
37 |
| C |
2 |
2 |
2 |
1.00 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
1.86 |
1.86 |
0.00 |
0.97 |
100 |
| E |
3 |
2 |
2 |
0.80 |
0.50 |
0.99 |
1.49 |
0.99 |
1.00 |
1.84 |
1.86 |
0.00 |
0.78 |
205 |
| M |
31 |
29 |
16 |
0.53 |
0.72 |
0.83 |
1.55 |
0.83 |
0.87 |
0.66 |
0.43 |
0.00 |
0.84 |
263 |
| |
| Base Pair (693:769)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
51 |
48 |
29 |
0.59 |
0.75 |
0.89 |
1.64 |
0.89 |
0.91 |
0.50 |
0.44 |
0.00 |
0.85 |
887 |
| 3 |
18 |
19 |
12 |
0.65 |
0.96 |
0.98 |
1.94 |
0.98 |
0.99 |
0.58 |
0.61 |
0.00 |
0.83 |
524 |
| B |
6 |
7 |
4 |
0.61 |
0.94 |
1.00 |
1.93 |
1.00 |
1.00 |
1.63 |
1.61 |
0.00 |
0.86 |
282 |
| A |
3 |
3 |
3 |
1.00 |
0.93 |
0.97 |
1.90 |
0.97 |
1.00 |
0.76 |
0.72 |
0.00 |
0.90 |
37 |
| C |
4 |
3 |
3 |
0.86 |
0.86 |
0.99 |
1.85 |
0.99 |
1.00 |
1.52 |
1.58 |
0.00 |
0.97 |
100 |
| E |
9 |
9 |
5 |
0.56 |
0.74 |
0.96 |
1.70 |
0.96 |
0.98 |
1.23 |
1.25 |
0.00 |
0.78 |
205 |
| M |
29 |
26 |
14 |
0.51 |
0.67 |
0.84 |
1.51 |
0.67 |
0.71 |
0.30 |
0.46 |
0.00 |
0.83 |
263 |
| |
| Base Pair (694:768)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
44 |
52 |
18 |
0.38 |
0.45 |
0.82 |
1.28 |
0.25 |
0.93 |
0.79 |
0.78 |
0.00 |
0.85 |
886 |
| 3 |
12 |
7 |
4 |
0.42 |
0.34 |
0.92 |
1.26 |
0.08 |
0.96 |
1.39 |
1.56 |
0.00 |
0.83 |
523 |
| B |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
2.00 |
2.00 |
0.00 |
0.86 |
282 |
| A |
4 |
5 |
3 |
0.67 |
0.59 |
0.81 |
1.40 |
0.70 |
0.97 |
0.78 |
0.39 |
0.00 |
0.90 |
37 |
| C |
2 |
5 |
1 |
0.29 |
0.14 |
0.00 |
0.14 |
0.04 |
0.97 |
1.86 |
1.62 |
0.00 |
0.97 |
100 |
| E |
8 |
2 |
1 |
0.20 |
0.03 |
0.00 |
0.03 |
0.09 |
0.91 |
1.16 |
1.75 |
0.01 |
0.77 |
204 |
| M |
30 |
40 |
13 |
0.37 |
0.48 |
0.59 |
1.07 |
0.65 |
0.84 |
0.06 |
0.02 |
0.00 |
0.84 |
263 |
| |
| Base Pair (695:767)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
39 |
45 |
22 |
0.52 |
0.12 |
0.00 |
0.12 |
0.22 |
0.99 |
1.11 |
1.32 |
0.00 |
0.85 |
887 |
| 3 |
2 |
11 |
1 |
0.15 |
0.07 |
0.00 |
0.07 |
0.06 |
1.00 |
1.94 |
1.65 |
0.00 |
0.83 |
524 |
| B |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
2.00 |
2.00 |
0.00 |
0.86 |
282 |
| A |
0 |
6 |
0 |
0.00 |
0.06 |
0.00 |
0.06 |
0.46 |
1.00 |
1.82 |
0.86 |
0.00 |
0.90 |
37 |
| C |
3 |
1 |
1 |
0.50 |
0.50 |
0.98 |
1.48 |
0.03 |
0.99 |
1.73 |
1.86 |
0.00 |
0.97 |
100 |
| E |
2 |
5 |
1 |
0.29 |
0.14 |
0.00 |
0.14 |
0.06 |
0.99 |
1.91 |
1.61 |
0.00 |
0.78 |
205 |
| M |
34 |
33 |
20 |
0.60 |
0.33 |
0.63 |
0.96 |
0.63 |
0.96 |
0.48 |
0.75 |
0.00 |
0.84 |
263 |
| |
| Base Pair (696:766)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
69 |
73 |
53 |
0.75 |
0.79 |
0.89 |
1.68 |
0.88 |
0.99 |
0.54 |
0.52 |
0.00 |
0.85 |
885 |
| 3 |
34 |
35 |
29 |
0.84 |
0.85 |
0.92 |
1.77 |
0.86 |
1.00 |
0.57 |
0.56 |
0.00 |
0.83 |
522 |
| B |
19 |
22 |
16 |
0.78 |
0.84 |
0.90 |
1.75 |
0.75 |
1.00 |
0.48 |
0.48 |
0.00 |
0.86 |
280 |
| A |
2 |
2 |
2 |
1.00 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
1.51 |
1.51 |
0.00 |
0.90 |
37 |
| C |
13 |
14 |
9 |
0.67 |
0.77 |
0.89 |
1.66 |
0.89 |
0.99 |
0.74 |
0.78 |
0.00 |
0.97 |
100 |
| E |
13 |
11 |
11 |
0.92 |
0.93 |
0.98 |
1.91 |
0.98 |
0.99 |
0.93 |
0.98 |
0.00 |
0.78 |
205 |
| M |
22 |
24 |
15 |
0.65 |
0.86 |
0.93 |
1.79 |
0.93 |
0.97 |
0.45 |
0.46 |
0.00 |
0.84 |
263 |
| |
| Base Pair (697:765)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
66 |
67 |
55 |
0.83 |
0.86 |
0.91 |
1.77 |
0.91 |
0.93 |
0.14 |
0.22 |
0.00 |
0.84 |
886 |
| 3 |
30 |
29 |
24 |
0.81 |
0.93 |
0.96 |
1.89 |
0.96 |
0.98 |
0.32 |
0.33 |
0.00 |
0.83 |
523 |
| B |
19 |
18 |
17 |
0.92 |
0.95 |
0.98 |
1.94 |
0.98 |
0.99 |
0.81 |
0.79 |
0.00 |
0.86 |
281 |
| A |
0 |
0 |
0 |
0.00 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
1.59 |
1.59 |
0.00 |
0.90 |
37 |
| C |
6 |
6 |
6 |
1.00 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
1.46 |
1.46 |
0.00 |
0.97 |
100 |
| E |
11 |
11 |
7 |
0.64 |
0.84 |
0.92 |
1.76 |
0.92 |
0.98 |
0.56 |
0.54 |
0.00 |
0.78 |
205 |
| M |
30 |
32 |
25 |
0.81 |
0.65 |
0.77 |
1.42 |
0.77 |
0.79 |
0.29 |
0.09 |
0.01 |
0.83 |
263 |
| |
|
| Base Pair (698:763) (Tertiary)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
25 |
23 |
13 |
0.54 |
0.78 |
0.96 |
1.74 |
0.96 |
0.97 |
1.11 |
1.14 |
0.00 |
0.84 |
887 |
| 3 |
10 |
10 |
4 |
0.40 |
0.82 |
0.96 |
1.77 |
0.96 |
0.97 |
1.15 |
1.13 |
0.00 |
0.83 |
524 |
| B |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.99 |
0.99 |
1.94 |
1.96 |
0.00 |
0.86 |
282 |
| A |
2 |
1 |
0 |
0.00 |
0.50 |
0.92 |
1.42 |
0.92 |
1.00 |
1.36 |
1.59 |
0.00 |
0.90 |
37 |
| C |
1 |
1 |
1 |
1.00 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
1.92 |
1.92 |
0.00 |
0.97 |
100 |
| E |
8 |
9 |
4 |
0.47 |
0.85 |
0.92 |
1.76 |
0.92 |
0.94 |
0.75 |
0.72 |
0.00 |
0.78 |
205 |
| M |
14 |
12 |
8 |
0.61 |
0.70 |
0.93 |
1.63 |
0.93 |
0.95 |
0.95 |
1.03 |
0.01 |
0.83 |
263 |
| |
Last generated : Mon Jul 2 2001 (16 : 9)