23S rRNA Model Base Pair Collective Scoring Data for Helical Element 700
| Base Pair (700:732)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
25 |
33 |
24 |
0.83 |
0.79 |
0.97 |
1.76 |
0.97 |
0.98 |
1.10 |
1.08 |
0.00 |
0.82 |
887 |
| 3 |
8 |
10 |
6 |
0.67 |
0.79 |
0.98 |
1.77 |
0.98 |
0.98 |
1.46 |
1.46 |
0.00 |
0.83 |
524 |
| B |
2 |
1 |
1 |
0.67 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
1.76 |
1.72 |
0.00 |
0.86 |
282 |
| A |
3 |
3 |
3 |
1.00 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
1.20 |
1.20 |
0.00 |
0.90 |
37 |
| C |
5 |
6 |
5 |
0.91 |
0.86 |
0.99 |
1.85 |
0.99 |
1.00 |
1.63 |
1.59 |
0.00 |
0.97 |
100 |
| E |
3 |
6 |
2 |
0.44 |
0.67 |
0.95 |
1.61 |
0.95 |
0.96 |
1.21 |
1.27 |
0.01 |
0.77 |
205 |
| M |
12 |
17 |
13 |
0.90 |
0.78 |
0.94 |
1.73 |
0.94 |
0.95 |
0.42 |
0.37 |
0.00 |
0.76 |
263 |
| |
| Base Pair (701:731)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
33 |
32 |
26 |
0.80 |
0.70 |
0.88 |
1.58 |
0.88 |
0.99 |
0.51 |
0.27 |
0.00 |
0.82 |
885 |
| 3 |
6 |
9 |
3 |
0.40 |
0.23 |
0.84 |
1.07 |
0.84 |
1.00 |
1.61 |
1.21 |
0.00 |
0.82 |
522 |
| B |
2 |
3 |
2 |
0.80 |
0.75 |
0.99 |
1.74 |
0.99 |
1.00 |
1.73 |
1.79 |
0.00 |
0.86 |
282 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
1.00 |
2.00 |
2.00 |
0.00 |
0.90 |
37 |
| C |
5 |
5 |
5 |
1.00 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
1.21 |
1.21 |
0.00 |
0.97 |
100 |
| E |
4 |
6 |
1 |
0.20 |
0.19 |
0.00 |
0.19 |
0.59 |
0.99 |
1.48 |
1.00 |
0.00 |
0.77 |
203 |
| M |
22 |
18 |
18 |
0.90 |
0.88 |
0.93 |
1.81 |
0.93 |
0.98 |
-0.23 |
-0.28 |
0.00 |
0.76 |
263 |
| |
| Base Pair (702:730)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
60 |
69 |
46 |
0.71 |
0.89 |
0.93 |
1.82 |
0.93 |
0.97 |
-0.14 |
-0.11 |
0.01 |
0.81 |
886 |
| 3 |
34 |
37 |
30 |
0.84 |
0.91 |
0.95 |
1.85 |
0.95 |
1.00 |
0.32 |
0.25 |
0.00 |
0.82 |
523 |
| B |
26 |
26 |
21 |
0.81 |
0.95 |
0.98 |
1.93 |
0.98 |
1.00 |
0.45 |
0.40 |
0.00 |
0.86 |
281 |
| A |
3 |
3 |
3 |
1.00 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
0.36 |
0.36 |
0.00 |
0.90 |
37 |
| C |
8 |
12 |
6 |
0.60 |
0.58 |
0.87 |
1.45 |
0.87 |
0.94 |
0.89 |
0.94 |
0.00 |
0.97 |
100 |
| E |
5 |
8 |
6 |
0.92 |
0.68 |
0.89 |
1.57 |
0.89 |
1.00 |
0.85 |
0.69 |
0.01 |
0.77 |
205 |
| M |
18 |
20 |
10 |
0.53 |
0.83 |
0.92 |
1.75 |
0.92 |
0.94 |
-0.05 |
0.10 |
0.02 |
0.74 |
263 |
| |
| Base Pair (703:729)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
40 |
4 |
1 |
0.04 |
0.02 |
0.00 |
0.02 |
0.17 |
0.93 |
0.55 |
1.49 |
0.01 |
0.79 |
887 |
| 3 |
20 |
0 |
0 |
0.00 |
0.01 |
0.00 |
0.01 |
0.23 |
1.00 |
1.23 |
1.98 |
0.00 |
0.83 |
524 |
| B |
1 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.02 |
1.00 |
1.87 |
2.00 |
0.00 |
0.86 |
282 |
| A |
3 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.32 |
1.00 |
1.09 |
2.00 |
0.00 |
0.90 |
37 |
| C |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
2.00 |
2.00 |
0.00 |
0.97 |
100 |
| E |
16 |
0 |
0 |
0.00 |
0.01 |
0.00 |
0.01 |
0.49 |
0.99 |
1.00 |
1.96 |
0.00 |
0.78 |
205 |
| M |
20 |
4 |
1 |
0.08 |
0.04 |
0.00 |
0.04 |
0.09 |
0.73 |
-0.30 |
0.73 |
0.04 |
0.64 |
263 |
| |
|
| Base Pair (707:724)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
13 |
7 |
1 |
0.10 |
0.16 |
0.00 |
0.16 |
0.07 |
0.99 |
0.31 |
0.50 |
0.00 |
0.63 |
887 |
| 3 |
5 |
2 |
0 |
0.00 |
0.06 |
0.00 |
0.06 |
0.03 |
1.00 |
1.74 |
1.96 |
0.00 |
0.83 |
524 |
| B |
4 |
1 |
0 |
0.00 |
0.06 |
0.00 |
0.06 |
0.05 |
1.00 |
1.69 |
1.97 |
0.00 |
0.86 |
282 |
| A |
0 |
0 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.00 |
1.00 |
2.00 |
2.00 |
0.00 |
0.90 |
37 |
| C |
5 |
1 |
0 |
0.00 |
0.08 |
0.00 |
0.08 |
0.11 |
0.98 |
1.52 |
1.71 |
0.00 |
0.97 |
100 |
| E |
1 |
1 |
0 |
0.00 |
0.00 |
0.00 |
0.00 |
0.01 |
0.99 |
1.86 |
1.96 |
0.01 |
0.77 |
205 |
| M |
3 |
4 |
1 |
0.29 |
0.42 |
0.60 |
1.02 |
0.60 |
0.91 |
-0.57 |
-0.53 |
0.01 |
0.11 |
263 |
| |
| Base Pair (708:723)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
29 |
34 |
23 |
0.73 |
0.92 |
0.97 |
1.88 |
0.97 |
0.97 |
-0.47 |
-0.49 |
0.00 |
0.61 |
886 |
| 3 |
22 |
24 |
18 |
0.78 |
0.95 |
0.98 |
1.93 |
0.98 |
0.98 |
0.50 |
0.53 |
0.00 |
0.82 |
523 |
| B |
10 |
12 |
8 |
0.73 |
0.96 |
0.97 |
1.93 |
0.97 |
0.98 |
0.54 |
0.49 |
0.00 |
0.86 |
282 |
| A |
5 |
5 |
5 |
1.00 |
1.00 |
1.00 |
2.00 |
1.00 |
1.00 |
0.71 |
0.71 |
0.00 |
0.90 |
37 |
| C |
5 |
7 |
3 |
0.50 |
0.53 |
0.92 |
1.45 |
0.92 |
0.93 |
1.50 |
1.19 |
0.00 |
0.97 |
100 |
| E |
7 |
7 |
5 |
0.71 |
0.91 |
0.98 |
1.89 |
0.98 |
0.98 |
0.99 |
1.06 |
0.01 |
0.76 |
204 |
| M |
2 |
3 |
2 |
0.80 |
0.70 |
0.88 |
1.57 |
0.88 |
0.92 |
-0.39 |
-0.36 |
0.00 |
0.08 |
263 |
| |
| Base Pair (709:722)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
28 |
31 |
18 |
0.61 |
0.94 |
0.96 |
1.90 |
0.96 |
0.98 |
-0.65 |
-0.65 |
0.00 |
0.62 |
887 |
| 3 |
21 |
23 |
14 |
0.64 |
0.94 |
0.96 |
1.90 |
0.96 |
0.98 |
0.19 |
0.27 |
0.01 |
0.82 |
524 |
| B |
13 |
16 |
9 |
0.62 |
0.92 |
0.96 |
1.88 |
0.96 |
0.99 |
0.37 |
0.41 |
0.00 |
0.86 |
282 |
| A |
6 |
4 |
3 |
0.60 |
0.90 |
0.95 |
1.84 |
0.95 |
0.97 |
0.40 |
0.47 |
0.00 |
0.90 |
37 |
| C |
5 |
5 |
3 |
0.60 |
0.75 |
0.97 |
1.72 |
0.97 |
0.97 |
1.40 |
1.35 |
0.00 |
0.97 |
100 |
| E |
2 |
3 |
2 |
0.80 |
0.50 |
0.97 |
1.48 |
0.97 |
0.97 |
1.56 |
1.76 |
0.01 |
0.77 |
205 |
| M |
2 |
3 |
1 |
0.40 |
0.79 |
0.88 |
1.66 |
0.88 |
0.96 |
-0.40 |
-0.41 |
0.00 |
0.08 |
263 |
| |
| Base Pair (710:721)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
39 |
46 |
23 |
0.54 |
0.73 |
0.83 |
1.56 |
0.83 |
0.91 |
-0.75 |
-0.66 |
0.00 |
0.62 |
886 |
| 3 |
32 |
33 |
20 |
0.61 |
0.71 |
0.83 |
1.54 |
0.83 |
0.91 |
0.09 |
0.29 |
0.00 |
0.83 |
523 |
| B |
24 |
25 |
16 |
0.65 |
0.71 |
0.79 |
1.50 |
0.79 |
0.90 |
0.07 |
0.10 |
0.00 |
0.86 |
281 |
| A |
3 |
4 |
2 |
0.57 |
0.67 |
0.84 |
1.50 |
0.84 |
1.00 |
0.62 |
0.31 |
0.00 |
0.90 |
37 |
| C |
2 |
10 |
0 |
0.00 |
0.17 |
0.00 |
0.17 |
0.80 |
0.88 |
1.73 |
0.90 |
0.00 |
0.97 |
100 |
| E |
5 |
4 |
2 |
0.44 |
0.25 |
0.90 |
1.15 |
0.89 |
0.92 |
1.23 |
1.31 |
0.00 |
0.78 |
205 |
| M |
5 |
3 |
3 |
0.75 |
0.77 |
0.85 |
1.62 |
0.85 |
0.89 |
-0.43 |
-0.42 |
0.00 |
0.09 |
263 |
| |
| Base Pair (711:720)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
48 |
50 |
28 |
0.57 |
0.59 |
0.82 |
1.41 |
0.82 |
0.96 |
-0.38 |
-0.43 |
0.00 |
0.62 |
886 |
| 3 |
32 |
35 |
21 |
0.63 |
0.60 |
0.84 |
1.44 |
0.84 |
0.97 |
0.68 |
0.65 |
0.00 |
0.83 |
523 |
| B |
26 |
27 |
20 |
0.76 |
0.64 |
0.77 |
1.40 |
0.77 |
0.95 |
0.37 |
0.50 |
0.00 |
0.86 |
282 |
| A |
3 |
3 |
1 |
0.33 |
0.56 |
0.81 |
1.37 |
0.81 |
1.00 |
0.80 |
0.60 |
0.00 |
0.90 |
37 |
| C |
13 |
11 |
5 |
0.42 |
0.44 |
0.70 |
1.14 |
0.70 |
0.93 |
0.65 |
0.58 |
0.00 |
0.97 |
100 |
| E |
3 |
5 |
0 |
0.00 |
0.42 |
0.95 |
1.37 |
0.94 |
0.98 |
1.55 |
1.52 |
0.01 |
0.77 |
204 |
| M |
3 |
4 |
2 |
0.57 |
0.79 |
0.88 |
1.67 |
0.88 |
0.88 |
-0.43 |
-0.44 |
0.00 |
0.08 |
263 |
| |
| Base Pair (712:719)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
31 |
33 |
23 |
0.72 |
0.78 |
0.92 |
1.70 |
0.92 |
0.98 |
-0.27 |
-0.33 |
0.00 |
0.62 |
886 |
| 3 |
21 |
22 |
14 |
0.65 |
0.81 |
0.92 |
1.73 |
0.92 |
0.99 |
0.76 |
0.65 |
0.00 |
0.82 |
523 |
| B |
12 |
11 |
9 |
0.78 |
0.80 |
0.97 |
1.77 |
0.97 |
0.99 |
1.17 |
1.16 |
0.00 |
0.86 |
281 |
| A |
2 |
3 |
2 |
0.80 |
0.93 |
0.97 |
1.90 |
0.97 |
1.00 |
0.73 |
0.56 |
0.00 |
0.90 |
37 |
| C |
4 |
5 |
3 |
0.67 |
0.67 |
0.97 |
1.64 |
0.96 |
0.98 |
1.52 |
1.48 |
0.00 |
0.97 |
100 |
| E |
7 |
8 |
3 |
0.40 |
0.65 |
0.86 |
1.51 |
0.85 |
0.99 |
0.91 |
0.94 |
0.01 |
0.76 |
205 |
| M |
6 |
6 |
6 |
1.00 |
0.63 |
0.72 |
1.35 |
0.64 |
0.80 |
-0.45 |
-0.45 |
0.00 |
0.08 |
263 |
| |
| Base Pair (713:718) (Tertiary)
| Frequencies |
| Aln
| Xch
| Ych
| PE
| PES
| Cov1
| Cov3
| C1+C3
| WC
| WCGU
| XCons
| YCons
| DfDel
| PNuc
| Seq
|
|---|
| T |
20 |
18 |
11 |
0.58 |
0.20 |
0.66 |
0.86 |
0.39 |
0.40 |
0.08 |
-0.36 |
0.00 |
0.62 |
886 |
| 3 |
13 |
12 |
9 |
0.72 |
0.20 |
0.62 |
0.83 |
0.46 |
0.46 |
1.37 |
0.61 |
0.00 |
0.83 |
523 |
| B |
3 |
2 |
1 |
0.40 |
0.20 |
0.00 |
0.20 |
0.01 |
0.01 |
1.87 |
1.91 |
0.00 |
0.86 |
282 |
| A |
3 |
2 |
2 |
0.80 |
0.93 |
0.97 |
1.90 |
0.97 |
1.00 |
0.90 |
1.06 |
0.00 |
0.90 |
37 |
| C |
4 |
4 |
1 |
0.25 |
0.25 |
0.91 |
1.16 |
0.04 |
0.06 |
1.48 |
1.60 |
0.00 |
0.97 |
100 |
| E |
7 |
8 |
6 |
0.80 |
0.97 |
0.99 |
1.96 |
0.99 |
0.99 |
1.23 |
1.25 |
0.00 |
0.78 |
204 |
| M |
3 |
2 |
1 |
0.40 |
0.21 |
0.50 |
0.71 |
0.41 |
0.46 |
-0.40 |
-0.34 |
0.00 |
0.07 |
263 |
| |
Last generated : Mon Jul 2 2001 (16 : 9)