16S rRNA Thermus thermophilus Comparative/Crystal Structure Base Triple Frequencies (1/27)
| Triple (9:25)542 |
|---|
| Aln |
CGA |
CGC |
CGG |
CGU |
GCA |
gap |
Other |
N |
Cov1 |
Cov2 |
Conservation |
Seq |
|---|
| T |
17.8 |
0.4 |
2.0 |
*3.2 |
*51.0 |
22.4 |
3.1 |
29 |
0.70 |
-- |
0.52/0.64/0.80 |
3845 |
| 3 |
24.5 |
0.6 |
2.7 |
*4.4 |
*64.5 |
1.0 |
2.3 |
20 |
0.70 |
-- |
0.93/1.03/1.53 |
2802 |
| B |
-- |
-- |
-- |
-- |
96.5 |
0.5 |
3.0 |
10 |
-- |
-- |
1.86/1.85/1.84 |
1873 |
| A |
-- |
-- |
27.6 |
71.7 |
-- |
-- |
0.7 |
3 |
-- |
-- |
1.94/2.00/1.08 |
145 |
| C |
-- |
-- |
-- |
-- |
95.8 |
-- |
4.2 |
4 |
-- |
-- |
1.82/2.00/1.76 |
119 |
| E |
*87.3 |
2.0 |
4.5 |
2.5 |
0.1 |
2.7 |
0.9 |
12 |
-- |
-- |
1.72/1.94/1.31 |
786 |
| M |
-- |
-- |
-- |
-- |
*4.5 |
89.9 |
5.5 |
12 |
0.52 |
-- |
1.30/1.28/-0.47 |
925 |
| Triple (11:23)544 |
|---|
| Aln |
ACA |
GCA |
GCC |
GCU |
gap |
Other |
N |
Cov1 |
Cov2 |
Conservation |
Seq |
|---|
| T |
0.7 |
0.7 |
0.8 |
*75.7 |
20.7 |
1.5 |
16 |
-- |
-- |
1.61/1.84/1.10 |
3977 |
| 3 |
-- |
0.8 |
1.0 |
96.9 |
0.7 |
0.6 |
9 |
-- |
-- |
1.91/1.95/1.85 |
2933 |
| B |
-- |
0.1 |
-- |
98.5 |
0.6 |
0.8 |
7 |
-- |
-- |
1.91/1.94/1.96 |
1981 |
| A |
-- |
-- |
-- |
100.0 |
-- |
-- |
1 |
-- |
-- |
2.00/2.00/1.93 |
149 |
| C |
-- |
-- |
-- |
99.2 |
-- |
0.8 |
2 |
-- |
-- |
1.93/2.00/2.00 |
121 |
| E |
-- |
2.7 |
3.5 |
92.3 |
1.1 |
0.4 |
6 |
-- |
-- |
1.89/1.99/1.47 |
805 |
| M |
2.8 |
0.5 |
0.4 |
*5.4 |
86.7 |
4.1 |
13 |
0.41 |
-- |
0.91/1.45/-0.52 |
924 |
| Triple (12:22)890 |
|---|
| Aln |
ACA |
CAA |
CAU |
GCA |
GCG |
UAA |
UGA |
gap |
Other |
N |
CovT1 |
CovT2 |
Conservation |
Seq |
|---|
| T |
1.1 |
1.5 |
*3.6 |
23.1 |
*0.6 |
0.9 |
*66.7 |
0.8 |
1.8 |
23 |
0.71 |
-- |
0.79/ 0.88/ 1.72 |
3687 |
| 3 |
1.3 |
-- |
-- |
29.3 |
*0.8 |
0.1 |
*66.8 |
0.6 |
1.2 |
16 |
0.68 |
-- |
0.95/ 1.07/ 1.93 |
2905 |
| B |
-- |
-- |
-- |
-- |
-- |
0.1 |
97.9 |
0.8 |
1.3 |
12 |
-- |
-- |
1.88/ 1.91/ 1.95 |
1970 |
| A |
-- |
-- |
-- |
90.2 |
-- |
0.7 |
8.4 |
-- |
0.7 |
4 |
-- |
-- |
1.58/ 1.53/ 1.96 |
143 |
| C |
-- |
-- |
-- |
-- |
-- |
-- |
96.7 |
2.5 |
0.8 |
2 |
-- |
-- |
1.93/ 2.00/ 1.84 |
120 |
| E |
4.9 |
-- |
-- |
90.8 |
2.8 |
-- |
0.1 |
0.5 |
0.9 |
7 |
-- |
-- |
1.62/ 1.90/ 1.85 |
794 |
| M |
-- |
8.3 |
*20.2 |
-- |
-- |
4.5 |
*61.2 |
0.8 |
5.0 |
14 |
0.82 |
0.82 |
0.97/ 0.99/ 1.26 |
663 |
| Triple (17:895)1061 |
|---|
| Aln |
UAA |
UAC |
UAG |
UAU |
gap |
Other |
N |
Cov1 |
Cov2 |
Conservation |
Seq |
|---|
| T |
5.9 |
2.9 |
*86.7 |
1.9 |
1.2 |
1.3 |
19 |
-- |
-- |
1.92/1.90/1.31 |
3883 |
| 3 |
0.1 |
0.1 |
*97.8 |
-- |
0.7 |
1.2 |
13 |
-- |
-- |
1.94/1.92/1.94 |
3091 |
| B |
-- |
-- |
98.8 |
-- |
0.5 |
0.7 |
10 |
-- |
-- |
1.95/1.96/1.95 |
2151 |
| A |
1.5 |
-- |
97.0 |
-- |
-- |
1.5 |
3 |
-- |
-- |
2.00/1.92/1.92 |
132 |
| C |
24.0 |
2.5 |
71.1 |
-- |
2.5 |
-- |
3 |
-- |
-- |
2.00/1.84/0.91 |
121 |
| E |
0.1 |
0.1 |
*95.8 |
0.1 |
1.1 |
2.7 |
9 |
-- |
-- |
1.91/1.80/1.90 |
806 |
| M |
29.3 |
16.1 |
*38.5 |
11.0 |
3.0 |
2.1 |
15 |
-- |
-- |
1.82/1.83/0.04 |
672 |
| Triple (18:894)841 |
|---|
| Aln |
CAA |
CGA |
CGC |
CGU |
GCA |
UAA |
gap |
Other |
N |
Cov1 |
Cov2 |
Conservation |
Seq |
|---|
| T |
1.7 |
*84.3 |
2.2 |
5.7 |
0.6 |
3.4 |
0.9 |
1.3 |
23 |
-- |
-- |
1.62/1.59/1.51 |
3911 |
| 3 |
2.1 |
92.4 |
0.2 |
0.1 |
-- |
3.9 |
0.4 |
1.0 |
10 |
-- |
-- |
1.68/1.66/1.95 |
3116 |
| B |
0.5 |
94.6 |
0.2 |
0.1 |
-- |
2.9 |
0.6 |
1.1 |
10 |
-- |
-- |
1.70/1.75/1.94 |
2143 |
| A |
-- |
99.3 |
-- |
-- |
-- |
-- |
-- |
0.7 |
2 |
-- |
-- |
1.94/1.96/2.00 |
149 |
| C |
-- |
95.9 |
0.8 |
-- |
-- |
-- |
2.4 |
0.8 |
3 |
-- |
-- |
1.93/1.78/1.83 |
123 |
| E |
6.5 |
85.5 |
-- |
-- |
-- |
7.1 |
0.2 |
0.6 |
4 |
-- |
-- |
1.58/1.34/2.00 |
826 |
| M |
-- |
*45.0 |
11.9 |
32.5 |
3.3 |
1.9 |
2.5 |
2.8 |
18 |
0.47 |
-- |
1.41/1.38/0.43 |
673 |
Last modified on 01 November 2002.