16S rRNA Thermus thermophilus Comparative/Crystal Structure Base Triple Frequencies (4/27)
| Triple (107:308)51 |
|---|
| Aln |
UAA |
UUA |
gap |
Other |
N |
Cov1 |
Cov2 |
Conservation |
Seq |
|---|
| T |
85.7 |
0.1 |
12.9 |
1.3 |
13 |
-- |
-- |
1.86/1.86/1.17 |
6397 |
| 3 |
98.2 |
0.1 |
0.2 |
1.5 |
12 |
-- |
-- |
1.88/1.90/1.96 |
5326 |
| B |
97.9 |
-- |
0.2 |
1.9 |
12 |
-- |
-- |
1.86/1.88/1.96 |
4184 |
| A |
97.5 |
2.5 |
-- |
-- |
2 |
-- |
-- |
2.00/1.85/2.00 |
201 |
| C |
99.4 |
-- |
-- |
0.6 |
2 |
-- |
-- |
1.95/2.00/2.00 |
161 |
| E |
99.7 |
-- |
0.1 |
0.2 |
3 |
-- |
-- |
1.95/2.00/1.97 |
943 |
| M |
10.2 |
-- |
89.2 |
0.5 |
3 |
-- |
-- |
1.72/1.68/-0.29 |
911 |
| Triple (107:308)109 |
|---|
| Aln |
UAA |
UAC |
UAG |
UAU |
UUA |
gap |
Other |
N |
CovT1 |
CovT2 |
Conservation |
Seq |
|---|
| T |
*88.3 |
4.8 |
2.7 |
2.5 |
0.1 |
0.4 |
1.2 |
22 |
-- |
-- |
1.86/ 1.86/ 1.33 |
6897 |
| 3 |
*90.6 |
4.7 |
3.2 |
0.2 |
0.1 |
0.2 |
1.1 |
14 |
-- |
-- |
1.88/ 1.90/ 1.49 |
5916 |
| B |
*92.5 |
5.7 |
0.2 |
0.1 |
-- |
0.2 |
1.4 |
13 |
-- |
-- |
1.86/ 1.88/ 1.63 |
4705 |
| A |
95.1 |
2.0 |
0.5 |
-- |
2.5 |
-- |
-- |
4 |
-- |
-- |
2.00/ 1.85/ 1.82 |
204 |
| C |
86.7 |
12.1 |
-- |
-- |
-- |
0.6 |
0.6 |
3 |
-- |
-- |
1.95/ 2.00/ 1.36 |
165 |
| E |
80.8 |
0.5 |
17.8 |
0.6 |
-- |
0.1 |
0.3 |
7 |
-- |
-- |
1.95/ 2.00/ 1.22 |
1008 |
| M |
*72.1 |
4.0 |
-- |
19.6 |
-- |
2.2 |
2.1 |
12 |
-- |
-- |
1.72/ 1.68/ 0.83 |
817 |
| Triple (116:233)114 |
|---|
| Aln |
AUA |
CAC |
CGA |
CGC |
CGU |
UAU |
gap |
Other |
N |
CovT1 |
CovT2 |
Conservation |
Seq |
|---|
| T |
*0.5 |
0.3 |
14.8 |
*58.1 |
18.4 |
*4.4 |
0.7 |
2.7 |
38 |
0.63 |
-- |
1.51/ 1.53/ 0.52 |
6961 |
| 3 |
*0.1 |
-- |
16.2 |
*62.1 |
14.0 |
*4.6 |
0.3 |
2.7 |
32 |
0.67 |
-- |
1.58/ 1.62/ 0.61 |
5973 |
| B |
-- |
-- |
0.3 |
*73.7 |
17.2 |
*5.7 |
0.3 |
2.8 |
25 |
0.80 |
-- |
1.55/ 1.58/ 1.05 |
4754 |
| A |
-- |
-- |
-- |
98.5 |
1.0 |
-- |
-- |
0.5 |
3 |
-- |
-- |
1.96/ 1.96/ 1.92 |
206 |
| C |
-- |
-- |
0.6 |
*82.1 |
8.9 |
*7.1 |
0.6 |
0.6 |
5 |
0.90 |
0.90 |
1.54/ 1.52/ 1.29 |
168 |
| E |
0.5 |
-- |
*94.1 |
0.7 |
1.6 |
*0.4 |
0.2 |
2.6 |
13 |
-- |
-- |
1.75/ 1.83/ 1.67 |
1014 |
| M |
*4.0 |
2.1 |
7.4 |
24.0 |
*52.9 |
2.3 |
4.0 |
3.3 |
19 |
0.59 |
-- |
1.15/ 1.07/ 0.35 |
821 |
| Triple (118:231)114 |
|---|
| Aln |
ACA |
CGA |
CGC |
CGU |
GCA |
UAC |
UAU |
UGC |
UGU |
gap |
Other |
N |
Cov1 |
Cov2 |
Conservation |
Seq |
|---|
| T |
0.3 |
0.8 |
2.8 |
6.6 |
*14.1 |
1.8 |
15.6 |
*53.9 |
0.9 |
0.8 |
2.4 |
34 |
0.69 |
-- |
0.84/0.65/0.52 |
6859 |
| 3 |
-- |
-- |
0.1 |
0.4 |
*16.4 |
1.9 |
17.6 |
*60.4 |
0.9 |
0.3 |
2.0 |
28 |
0.77 |
0.77 |
1.25/0.63/0.61 |
5871 |
| B |
-- |
-- |
0.1 |
0.2 |
-- |
1.9 |
22.2 |
*72.2 |
1.1 |
0.3 |
2.0 |
21 |
-- |
-- |
1.92/1.12/1.05 |
4653 |
| A |
-- |
-- |
0.5 |
1.0 |
-- |
8.2 |
-- |
89.4 |
-- |
0.5 |
0.5 |
5 |
-- |
-- |
1.89/1.52/1.92 |
207 |
| C |
-- |
-- |
-- |
-- |
-- |
1.2 |
10.8 |
80.2 |
6.0 |
1.2 |
0.6 |
5 |
-- |
-- |
2.00/1.35/1.29 |
167 |
| E |
-- |
-- |
0.2 |
*1.3 |
*95.2 |
*0.4 |
0.2 |
-- |
-- |
0.2 |
2.6 |
13 |
0.97 |
0.97 |
1.70/1.70/1.67 |
1012 |
| M |
*2.7 |
6.8 |
22.7 |
*52.3 |
0.2 |
*1.2 |
2.2 |
2.2 |
0.5 |
4.1 |
5.0 |
25 |
0.59 |
-- |
0.95/1.06/0.35 |
822 |
| Triple (121:228)124 |
|---|
| Aln |
AAA |
ACA |
AUA |
AUG |
CAA |
CGA |
GCA |
UAA |
UAG |
UCA |
gap |
Other |
N |
Cov1 |
Cov2 |
Conservation |
Seq |
|---|
| T |
0.6 |
0.5 |
9.2 |
*10.6 |
0.6 |
4.0 |
*61.1 |
3.0 |
0.5 |
0.7 |
3.9 |
5.3 |
56 |
0.75 |
-- |
0.53/0.52/1.04 |
7008 |
| 3 |
0.1 |
0.1 |
9.9 |
*12.2 |
0.1 |
4.6 |
*68.1 |
1.6 |
-- |
-- |
0.6 |
2.8 |
30 |
0.81 |
0.81 |
0.76/0.80/1.40 |
5992 |
| B |
-- |
0.1 |
7.5 |
-- |
-- |
3.8 |
84.8 |
0.9 |
-- |
-- |
0.7 |
2.2 |
18 |
-- |
-- |
1.20/1.22/1.96 |
4766 |
| A |
-- |
-- |
31.5 |
-- |
0.5 |
44.1 |
7.0 |
16.4 |
-- |
-- |
-- |
0.5 |
6 |
-- |
-- |
0.24/0.22/2.00 |
213 |
| C |
-- |
-- |
0.6 |
-- |
-- |
-- |
*97.0 |
-- |
-- |
-- |
1.2 |
1.2 |
4 |
0.99 |
-- |
1.87/1.76/1.90 |
169 |
| E |
0.6 |
0.1 |
16.7 |
*72.2 |
-- |
0.1 |
*2.2 |
2.0 |
-- |
-- |
0.2 |
6.0 |
22 |
0.75 |
-- |
1.46/1.55/1.09 |
1014 |
| M |
3.9 |
3.2 |
5.8 |
0.9 |
4.6 |
0.6 |
5.2 |
*13.4 |
4.2 |
6.0 |
28.2 |
23.9 |
53 |
0.21 |
-- |
-0.09/-0.24/-0.39 |
848 |
Last modified on 01 November 2002.