16S rRNA Thermus thermophilus Comparative/Crystal Structure Base Triple Frequencies (6/27)
| Triple (206:212)455 |
|---|
| Aln |
AUA |
AUC |
AUU |
CGA |
CGG |
GCA |
GUA |
UAA |
UAC |
UAU |
gap |
Other |
N |
Cov1 |
Cov2 |
Conservation |
Seq |
|---|
| T |
*10.0 |
0.3 |
0.4 |
3.9 |
*0.7 |
9.2 |
0.5 |
4.7 |
*0.2 |
0.3 |
65.0 |
4.8 |
39 |
0.32 |
-- |
-0.94/-0.94/-0.27 |
6939 |
| 3 |
*11.6 |
0.1 |
0.3 |
4.6 |
*0.8 |
10.7 |
0.6 |
5.5 |
*0.3 |
0.1 |
60.2 |
5.4 |
38 |
0.32 |
-- |
-0.96/-0.96/0.02 |
5948 |
| B |
*14.3 |
0.1 |
0.4 |
5.1 |
0.8 |
13.3 |
0.6 |
6.9 |
0.2 |
0.1 |
51.8 |
6.5 |
38 |
0.33 |
-- |
-0.96/-0.96/0.77 |
4700 |
| A |
8.3 |
-- |
-- |
*14.7 |
5.0 |
5.5 |
3.2 |
1.4 |
*2.8 |
-- |
52.3 |
6.9 |
15 |
0.38 |
-- |
-0.94/-0.92/1.22 |
218 |
| C |
4.2 |
*10.3 |
4.8 |
-- |
-- |
*1.2 |
-- |
-- |
-- |
*7.3 |
67.9 |
4.2 |
11 |
0.58 |
0.58 |
0.04/0.14/-0.88 |
165 |
| E |
-- |
-- |
-- |
-- |
-- |
0.1 |
-- |
-- |
-- |
-- |
99.9 |
-- |
1 |
-- |
-- |
-0.01/-0.01/-0.01 |
1030 |
| M |
-- |
-- |
0.1 |
-- |
-- |
*0.1 |
-- |
-- |
-- |
-- |
98.7 |
1.1 |
4 |
0.82 |
-- |
-0.20/-0.19/-0.14 |
828 |
| Triple (241:276)273
|
|---|
| Aln
| AAA
| AAC
| AAG
| AAU
| ACG
| ACU
| AGA
| AGC
| AGG
| AGU
| gap
| Other
| N
| Cov1
| Cov2
| Conservation
| Seq
|
|---|
| T
| 1.2
| 3.9
| 3.4
| 3.7
| 0.4
| 0.4
| 11.4
| 6.2
| *51.5
| 14.9
| 1.0
| 1.9
| 23
| --
| --
| 1.90/1.18/0.28
| 7157
|
| 3
| 1.2
| 1.0
| 3.9
| 4.1
| 0.5
| 0.5
| 11.7
| 1.1
| *57.8
| 16.6
| 0.1
| 1.5
| 20
| --
| --
| 1.99/1.34/0.57
| 6167
|
| B
| 0.3
| 0.1
| --
| 0.1
| --
| --
| 12.9
| 1.2
| 69.0
| 15.8
| 0.2
| 0.4
| 14
| --
| --
| 1.99/1.90/0.72
| 4923
|
| A
| 8.2
| 5.5
| 20.1
| 12.8
| 4.6
| 0.5
| 6.8
| --
| 13.2
| 19.6
| --
| 8.7
| 15
| --
| --
| 2.00/0.41/0.21
| 219
|
| C
| 0.6
| --
| 0.6
| 1.2
| --
| --
| 14.5
| 13.4
| 63.4
| 4.1
| --
| 2.3
| 9
| --
| --
| 2.00/1.68/0.51
| 172
|
| E
| 4.2
| 4.3
| 18.7
| *21.5
| 1.9
| 2.7
| 7.1
| 0.9
| 13.7
| 19.8
| --
| 5.2
| 17
| --
| --
| 1.99/0.56/0.33
| 1026
|
| M
| 1.1
| 27.0
| 0.5
| 1.2
| --
| 0.1
| 8.3
| *43.3
| 2.2
| 4.4
| 7.2
| 4.6
| 17
| 0.47
| --
| 1.42/0.37/0.62
| 819
|
| Triple (249:267)246 |
|---|
| Aln |
AUC |
CGC |
GCG |
UAC |
gap |
Other |
N |
Cov1 |
Cov2 |
Conservation |
Seq |
|---|
| T |
0.8 |
0.3 |
*86.2 |
*1.8 |
9.3 |
1.5 |
30 |
0.97 |
0.97 |
1.22/1.08/1.45 |
7253 |
| 3 |
-- |
-- |
98.7 |
-- |
0.1 |
1.2 |
14 |
-- |
-- |
1.96/1.91/1.98 |
6084 |
| B |
-- |
-- |
99.1 |
-- |
-- |
0.9 |
12 |
-- |
-- |
1.98/1.93/1.98 |
4849 |
| A |
-- |
-- |
100.0 |
-- |
-- |
-- |
1 |
-- |
-- |
2.00/2.00/2.00 |
212 |
| C |
-- |
-- |
*98.3 |
-- |
-- |
1.7 |
4 |
0.99 |
-- |
1.91/1.91/1.91 |
172 |
| E |
-- |
-- |
96.6 |
-- |
0.4 |
3.0 |
8 |
-- |
-- |
1.87/1.77/1.95 |
1024 |
| M |
5.9 |
2.2 |
*8.4 |
*13.4 |
66.8 |
3.2 |
21 |
0.66 |
0.66 |
-0.90/-0.84/1.03 |
998 |
| Triple (250:266)261 |
|---|
| Aln |
GCG |
GCU |
GUA |
UAG |
UAU |
gap |
Other |
N |
Cov1 |
Cov2 |
Conservation |
Seq |
|---|
| T |
*82.9 |
2.1 |
0.3 |
1.0 |
*0.4 |
12.5 |
0.7 |
23 |
-- |
-- |
1.16/1.04/1.05 |
7456 |
| 3 |
*95.2 |
2.5 |
-- |
1.1 |
*0.4 |
0.1 |
0.6 |
19 |
-- |
-- |
1.85/1.85/1.77 |
6263 |
| B |
99.5 |
-- |
-- |
-- |
-- |
0.1 |
0.3 |
9 |
-- |
-- |
1.98/1.99/1.97 |
5014 |
| A |
*80.4 |
-- |
-- |
5.8 |
*11.2 |
-- |
2.7 |
6 |
0.92 |
0.92 |
1.29/1.21/1.43 |
224 |
| C |
*96.5 |
1.2 |
-- |
-- |
-- |
0.6 |
1.7 |
5 |
0.98 |
-- |
1.91/1.79/1.82 |
172 |
| E |
*77.6 |
15.1 |
-- |
5.8 |
0.2 |
-- |
1.4 |
13 |
0.01 |
-- |
1.61/1.58/1.33 |
1026 |
| M |
*5.1 |
-- |
2.4 |
0.4 |
0.2 |
90.6 |
1.3 |
12 |
0.58 |
-- |
-0.58/-0.57/-0.82 |
1022 |
| Triple (286:304)590 |
|---|
| Aln |
CGA |
CGU |
GAA |
GCA |
UAA |
gap |
Other |
N |
Cov1 |
Cov2 |
Conservation |
Seq |
|---|
| T |
*29.7 |
1.4 |
0.1 |
8.0 |
28.9 |
30.2 |
1.6 |
20 |
0.43 |
-- |
-0.19/-0.11/0.40 |
6862 |
| 3 |
*36.3 |
1.7 |
0.1 |
9.8 |
31.8 |
18.6 |
1.8 |
19 |
0.45 |
-- |
0.40/0.40/0.77 |
5623 |
| B |
*46.6 |
2.2 |
-- |
7.9 |
40.9 |
0.1 |
2.3 |
17 |
0.47 |
-- |
0.64/0.64/1.71 |
4373 |
| A |
-- |
-- |
2.4 |
97.6 |
-- |
-- |
-- |
2 |
-- |
-- |
2.00/1.85/2.00 |
208 |
| C |
-- |
-- |
-- |
-- |
99.4 |
0.6 |
-- |
1 |
-- |
-- |
2.00/2.00/1.94 |
164 |
| E |
-- |
-- |
-- |
-- |
*0.1 |
99.8 |
0.1 |
2 |
1.00 |
1.00 |
1.88/1.90/-0.02 |
1042 |
| M |
0.1 |
*0.3 |
-- |
0.1 |
*3.1 |
95.4 |
1.1 |
8 |
0.72 |
-- |
-0.38/-0.46/-0.24 |
1076 |
Last modified on 01 November 2002.