16S rRNA Thermus thermophilus Comparative/Crystal Structure Base Triple Frequencies (8/27)
| Triple (337:342)154 |
|---|
| Aln |
CGA |
GCA |
UGA |
gap |
Other |
N |
Cov1 |
Cov2 |
Conservation |
Seq |
|---|
| T |
*86.4 |
0.1 |
0.3 |
12.5 |
0.7 |
19 |
-- |
-- |
1.59/1.82/1.27 |
6842 |
| 3 |
98.0 |
0.1 |
0.2 |
1.5 |
0.2 |
8 |
-- |
-- |
1.83/1.97/1.97 |
5855 |
| B |
98.0 |
-- |
0.3 |
1.6 |
0.1 |
5 |
-- |
-- |
1.82/1.97/1.98 |
4635 |
| A |
92.4 |
2.4 |
0.5 |
4.8 |
-- |
3 |
-- |
-- |
1.46/1.85/2.00 |
210 |
| C |
92.7 |
-- |
3.6 |
0.6 |
3.0 |
7 |
-- |
-- |
1.62/1.85/1.85 |
165 |
| E |
99.3 |
-- |
-- |
-- |
0.7 |
4 |
-- |
-- |
1.99/2.00/1.93 |
1011 |
| M |
*2.9 |
-- |
-- |
93.2 |
3.9 |
11 |
0.50 |
-- |
0.57/1.07/-0.38 |
823 |
| Triple (337:342)155 |
|---|
| Aln |
CGA |
CGU |
GCA |
UGA |
gap |
Other |
N |
Cov1 |
Cov2 |
Conservation |
Seq |
|---|
| T |
*73.4 |
12.7 |
0.1 |
0.3 |
12.5 |
1.0 |
20 |
-- |
-- |
1.59/1.82/0.74 |
6851 |
| 3 |
82.8 |
14.8 |
0.1 |
0.2 |
1.5 |
0.6 |
8 |
-- |
-- |
1.83/1.97/1.34 |
5864 |
| B |
97.8 |
-- |
-- |
0.3 |
1.6 |
0.3 |
6 |
-- |
-- |
1.82/1.97/1.96 |
4640 |
| A |
92.4 |
-- |
2.4 |
0.5 |
4.7 |
-- |
3 |
-- |
-- |
1.46/1.85/2.00 |
211 |
| C |
*93.3 |
-- |
-- |
4.2 |
0.6 |
1.8 |
5 |
0.94 |
-- |
1.62/1.85/1.88 |
165 |
| E |
12.3 |
85.3 |
-- |
-- |
0.4 |
2.0 |
4 |
-- |
-- |
1.99/2.00/1.27 |
1014 |
| M |
*2.8 |
0.1 |
0.1 |
-- |
93.1 |
3.9 |
15 |
0.46 |
-- |
0.57/1.07/-0.37 |
823 |
| Triple (357:360)49 |
|---|
| Aln |
AAU |
ACU |
AUU |
GAU |
GUU |
UAU |
UCC |
UCU |
UUU |
gap |
Other |
N |
Cov1 |
Cov2 |
Conservation |
Seq |
|---|
| T |
2.6 |
0.9 |
1.3 |
18.1 |
*69.5 |
0.3 |
*0.3 |
4.5 |
0.9 |
0.8 |
0.9 |
32 |
-- |
-- |
1.36/0.98/1.89 |
6100 |
| 3 |
-- |
-- |
-- |
21.3 |
77.4 |
-- |
-- |
-- |
0.1 |
0.7 |
0.5 |
13 |
-- |
-- |
1.93/1.26/1.95 |
5163 |
| B |
-- |
-- |
-- |
0.1 |
98.7 |
-- |
-- |
-- |
0.1 |
0.7 |
0.4 |
10 |
-- |
-- |
1.93/1.97/1.95 |
4038 |
| A |
-- |
-- |
-- |
90.5 |
4.5 |
-- |
-- |
-- |
-- |
4.5 |
0.5 |
3 |
-- |
-- |
1.68/1.72/2.00 |
200 |
| C |
-- |
-- |
-- |
-- |
96.2 |
-- |
-- |
-- |
1.3 |
1.3 |
1.3 |
4 |
-- |
-- |
1.84/1.95/1.88 |
158 |
| E |
-- |
-- |
-- |
98.8 |
0.2 |
-- |
-- |
-- |
-- |
0.2 |
0.8 |
5 |
-- |
-- |
1.98/1.96/1.92 |
927 |
| M |
20.1 |
6.7 |
10.4 |
0.3 |
11.8 |
2.4 |
2.4 |
*34.9 |
6.7 |
0.8 |
3.6 |
25 |
-- |
-- |
0.44/0.38/1.60 |
780 |
| Triple (365:386)368 |
|---|
| Aln |
AUA |
AUC |
AUU |
CGA |
GCA |
UAA |
gap |
Other |
N |
CovT1 |
CovT2 |
Conservation |
Seq |
|---|
| T |
4.3 |
*2.0 |
1.5 |
*58.3 |
27.5 |
1.9 |
2.5 |
1.9 |
29 |
0.62 |
-- |
0.58/ 0.57/ 1.49 |
7135 |
| 3 |
-- |
-- |
-- |
*65.6 |
30.5 |
1.9 |
0.2 |
1.8 |
22 |
-- |
-- |
0.93/ 0.94/ 1.91 |
6110 |
| B |
-- |
-- |
-- |
*60.1 |
37.9 |
0.1 |
0.2 |
1.7 |
20 |
-- |
-- |
1.00/ 0.98/ 1.96 |
4867 |
| A |
-- |
-- |
-- |
*48.9 |
1.8 |
46.1 |
2.3 |
0.9 |
5 |
-- |
-- |
0.72/ 0.89/ 1.73 |
219 |
| C |
-- |
-- |
-- |
94.0 |
-- |
6.0 |
-- |
-- |
2 |
-- |
-- |
1.67/ 1.67/ 2.00 |
166 |
| E |
-- |
-- |
-- |
*94.9 |
1.6 |
0.8 |
0.2 |
2.5 |
7 |
-- |
-- |
1.67/ 1.77/ 1.80 |
1025 |
| M |
*35.6 |
16.7 |
12.3 |
0.2 |
11.6 |
1.6 |
19.0 |
2.9 |
17 |
0.45 |
-- |
1.15/ 1.18/-0.17 |
860 |
| Triple (365:386)466 |
|---|
| Aln |
CGA |
GCA |
UAA |
gap |
Other |
N |
CovT1 |
CovT2 |
Conservation |
Seq |
|---|
| T |
*43.6 |
23.7 |
0.2 |
30.2 |
2.3 |
20 |
0.64 |
-- |
0.58/ 0.57/ 0.39 |
6971 |
| 3 |
*48.2 |
27.1 |
0.1 |
22.4 |
2.3 |
18 |
0.63 |
-- |
0.93/ 0.94/ 0.67 |
5982 |
| B |
*61.1 |
34.4 |
0.1 |
1.5 |
2.9 |
18 |
0.63 |
-- |
1.00/ 0.98/ 1.70 |
4715 |
| A |
-- |
-- |
-- |
100.0 |
-- |
0 |
-- |
-- |
0.72/ 0.89/ 0.00 |
237 |
| C |
93.9 |
-- |
6.1 |
-- |
-- |
2 |
-- |
-- |
1.67/ 1.67/ 2.00 |
164 |
| E |
0.2 |
-- |
-- |
99.8 |
-- |
1 |
-- |
-- |
1.67/ 1.77/-0.02 |
1031 |
| M |
0.2 |
*4.2 |
-- |
92.4 |
3.1 |
6 |
0.75 |
0.75 |
1.15/ 1.18/-0.35 |
826 |
| Triple (366:385)368 |
|---|
| Aln |
AUA |
CGA |
GCA |
GCC |
GCU |
UAA |
gap |
Other |
N |
CovT1 |
CovT2 |
Conservation |
Seq |
|---|
| T |
*46.8 |
14.4 |
26.2 |
*2.0 |
1.4 |
4.5 |
2.5 |
2.1 |
31 |
0.50 |
-- |
0.32/ 0.33/ 1.49 |
7107 |
| 3 |
*53.7 |
16.8 |
22.7 |
-- |
-- |
4.5 |
0.2 |
2.1 |
23 |
-- |
-- |
0.37/ 0.39/ 1.91 |
6081 |
| B |
*65.8 |
0.2 |
26.5 |
-- |
-- |
5.4 |
0.1 |
2.0 |
20 |
-- |
-- |
0.80/ 0.80/ 1.96 |
4828 |
| A |
40.2 |
10.9 |
*44.1 |
-- |
0.4 |
0.9 |
2.2 |
1.3 |
7 |
-- |
-- |
0.44/ 0.55/ 1.73 |
229 |
| C |
5.4 |
-- |
94.6 |
-- |
-- |
-- |
-- |
-- |
2 |
-- |
-- |
1.70/ 1.70/ 2.00 |
167 |
| E |
0.2 |
96.4 |
0.1 |
-- |
-- |
0.6 |
0.1 |
2.6 |
7 |
-- |
-- |
1.90/ 1.90/ 1.80 |
1025 |
| M |
6.3 |
0.1 |
*37.6 |
16.6 |
11.6 |
5.7 |
19.0 |
3.1 |
20 |
0.47 |
-- |
1.04/ 1.05/-0.17 |
860 |
| Triple (366:385)369 |
|---|
| Aln |
AUA |
AUC |
CGA |
CGC |
GCA |
UAA |
gap |
Other |
N |
Cov1 |
Cov2 |
Conservation |
Seq |
|---|
| T |
*46.9 |
0.6 |
12.1 |
*2.6 |
31.2 |
4.6 |
0.3 |
1.6 |
24 |
0.50 |
-- |
0.32/0.33/1.75 |
7129 |
| 3 |
*53.0 |
0.7 |
14.0 |
*3.0 |
23.1 |
4.4 |
0.2 |
1.5 |
22 |
0.56 |
-- |
0.37/0.39/1.74 |
6144 |
| B |
*65.6 |
-- |
0.2 |
-- |
26.9 |
5.4 |
0.2 |
1.8 |
19 |
-- |
-- |
0.80/0.80/1.97 |
4889 |
| A |
21.3 |
*19.1 |
10.9 |
-- |
*44.8 |
0.9 |
2.2 |
0.9 |
6 |
0.65 |
0.65 |
0.44/0.55/1.11 |
230 |
| C |
5.4 |
-- |
-- |
-- |
94.6 |
-- |
-- |
-- |
2 |
-- |
-- |
1.70/1.70/2.00 |
166 |
| E |
0.1 |
*0.1 |
*80.5 |
18.0 |
0.1 |
0.6 |
0.1 |
0.5 |
8 |
-- |
-- |
1.90/1.90/1.29 |
1026 |
| M |
9.9 |
-- |
0.1 |
-- |
*79.5 |
7.0 |
0.7 |
2.8 |
13 |
-- |
-- |
1.04/1.05/1.90 |
820 |
Last modified on 01 November 2002.