16S rRNA Thermus thermophilus Comparative/Crystal Structure Base Triple Frequencies (20/27)
| Triple (1028:1192)972 |
|---|
| Aln |
AAA |
AAC |
AAU |
ACC |
ACU |
AGC |
AUA |
AUC |
AUU |
CGU |
gap |
Other |
N |
Cov1 |
Cov2 |
Conservation |
Seq |
|---|
| T |
0.4 |
1.4 |
2.1 |
2.8 |
3.8 |
1.1 |
4.3 |
*61.0 |
2.1 |
*0.5 |
19.4 |
1.1 |
33 |
0.76 |
-- |
1.24/1.04/0.25 |
6831 |
| 3 |
-- |
0.5 |
-- |
-- |
-- |
-- |
4.4 |
71.4 |
0.8 |
-- |
22.6 |
0.2 |
10 |
-- |
-- |
1.25/1.55/0.48 |
5524 |
| B |
-- |
0.6 |
-- |
-- |
-- |
-- |
5.7 |
92.0 |
1.1 |
-- |
0.3 |
0.3 |
10 |
-- |
-- |
1.98/1.92/1.55 |
4286 |
| A |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
100.0 |
-- |
0 |
-- |
-- |
1.78/1.78/0.00 |
204 |
| C |
-- |
-- |
-- |
-- |
-- |
-- |
3.6 |
91.0 |
0.6 |
-- |
4.2 |
0.6 |
4 |
-- |
-- |
1.84/1.84/1.42 |
166 |
| E |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
0.1 |
-- |
-- |
99.9 |
-- |
1 |
-- |
-- |
1.58/1.24/-0.01 |
1030 |
| M |
2.6 |
6.4 |
12.3 |
16.6 |
*22.9 |
6.7 |
3.6 |
6.7 |
8.2 |
2.7 |
5.7 |
5.6 |
32 |
0.25 |
-- |
1.38/0.11/0.32 |
1142 |
| Triple (1037:1186)1181 |
|---|
| Aln |
ACC |
AUC |
gap |
Other |
N |
Cov1 |
Cov2 |
Conservation |
Seq |
|---|
| T |
2.7 |
96.5 |
0.3 |
0.6 |
11 |
-- |
-- |
1.96/1.79/1.94 |
6904 |
| 3 |
3.1 |
96.3 |
0.2 |
0.3 |
8 |
-- |
-- |
1.98/1.77/1.96 |
5593 |
| B |
3.9 |
95.5 |
0.1 |
0.4 |
8 |
-- |
-- |
1.98/1.75/1.97 |
4392 |
| A |
1.0 |
99.0 |
-- |
-- |
2 |
-- |
-- |
2.00/1.92/2.00 |
198 |
| C |
0.6 |
97.6 |
1.2 |
0.6 |
3 |
-- |
-- |
1.88/1.88/1.88 |
168 |
| E |
-- |
99.6 |
0.3 |
0.1 |
2 |
-- |
-- |
1.98/1.98/1.99 |
999 |
| M |
0.8 |
97.1 |
0.3 |
1.8 |
9 |
-- |
-- |
1.92/1.90/1.85 |
1144 |
| Triple (1039:1184)1035 |
|---|
| Aln |
CGA |
GAG |
GCG |
GUG |
UAA |
gap |
Other |
N |
Cov1 |
Cov2 |
Conservation |
Seq |
|---|
| T |
*14.9 |
2.5 |
*66.2 |
14.9 |
0.4 |
0.4 |
0.7 |
22 |
0.81 |
0.81 |
1.32/0.64/1.35 |
6780 |
| 3 |
-- |
3.1 |
78.1 |
17.8 |
-- |
0.3 |
0.6 |
13 |
-- |
-- |
1.97/1.10/1.95 |
5470 |
| B |
-- |
0.1 |
98.2 |
0.8 |
-- |
0.3 |
0.7 |
10 |
-- |
-- |
1.98/1.88/1.95 |
4270 |
| A |
-- |
-- |
38.1 |
*61.4 |
-- |
-- |
0.5 |
3 |
0.62 |
-- |
1.96/1.05/1.96 |
197 |
| C |
-- |
-- |
92.3 |
6.5 |
-- |
1.2 |
-- |
2 |
-- |
-- |
1.88/1.59/1.88 |
168 |
| E |
-- |
16.9 |
0.3 |
82.2 |
-- |
0.4 |
0.2 |
5 |
-- |
-- |
1.95/1.25/1.99 |
999 |
| M |
*88.4 |
-- |
*5.9 |
2.1 |
2.4 |
0.2 |
1.1 |
12 |
0.94 |
0.94 |
1.37/1.30/1.55 |
1143 |
| Triple (1040:1180)1183 |
|---|
| Aln |
AUA |
GCA |
GUA |
GUG |
GUU |
UUA |
gap |
Other |
N |
Cov1 |
Cov2 |
Conservation |
Seq |
|---|
| T |
0.8 |
0.5 |
11.4 |
21.7 |
*62.2 |
2.3 |
0.4 |
0.7 |
17 |
-- |
-- |
1.71/1.91/0.67 |
6894 |
| 3 |
-- |
-- |
0.1 |
24.9 |
74.2 |
-- |
0.3 |
0.5 |
12 |
-- |
-- |
1.93/1.97/1.17 |
5587 |
| B |
-- |
-- |
-- |
4.8 |
94.4 |
-- |
0.2 |
0.5 |
11 |
-- |
-- |
1.94/1.98/1.69 |
4389 |
| A |
-- |
-- |
1.0 |
99.0 |
-- |
-- |
-- |
-- |
2 |
-- |
-- |
2.00/2.00/1.92 |
195 |
| C |
-- |
-- |
1.2 |
51.2 |
45.8 |
-- |
1.8 |
-- |
3 |
-- |
-- |
1.83/1.94/0.87 |
166 |
| E |
-- |
-- |
-- |
99.0 |
0.1 |
-- |
0.4 |
0.5 |
3 |
-- |
-- |
1.93/1.98/1.98 |
999 |
| M |
4.6 |
3.2 |
68.2 |
1.8 |
6.1 |
13.9 |
0.7 |
1.4 |
12 |
-- |
-- |
1.12/1.71/1.43 |
1142 |
| Triple (1046:1173)1171 |
|---|
| Aln |
CUA |
GAC |
GCA |
GCC |
GCG |
GCU |
GUG |
UAA |
UAU |
UCA |
gap |
Other |
N
| Cov1 |
Cov2 |
Conservation |
Seq |
|---|
| T |
*12.4 |
1.2 |
4.9 |
1.9 |
*64.0 |
2.4 |
1.6 |
1.1 |
*1.1 |
3.6 |
0.4 |
5.5 |
50 |
0.78 |
0.78 |
0.99/1.00/0.73 |
6906 |
| 3 |
*15.3 |
-- |
1.6 |
1.3 |
*76.0 |
0.9 |
1.7 |
-- |
*0.4 |
0.8 |
0.2 |
1.9 |
30 |
0.92 |
0.92 |
1.23/1.21/1.11 |
5598 |
| B |
-- |
-- |
0.1 |
0.2 |
96.0 |
0.7 |
2.1 |
-- |
-- |
-- |
0.1 |
0.8 |
11 |
-- |
-- |
1.99/1.78/1.89 |
4397 |
| A |
-- |
-- |
42.6 |
30.5 |
18.3 |
8.6 |
-- |
-- |
-- |
-- |
-- |
-- |
4 |
-- |
-- |
2.00/2.00/0.19 |
197 |
| C |
-- |
-- |
4.8 |
-- |
*80.4 |
3.6 |
6.0 |
-- |
-- |
-- |
1.2 |
4.2 |
6 |
0.82 |
-- |
1.83/1.30/1.38 |
168 |
| E |
*85.6 |
-- |
-- |
-- |
*0.1 |
-- |
0.2 |
0.1 |
*2.1 |
4.3 |
0.2 |
7.4 |
21 |
0.88 |
-- |
1.44/1.44/1.44 |
1000 |
| M |
-- |
7.4 |
*21.0 |
5.2 |
2.6 |
9.6 |
0.3 |
6.8 |
*4.8 |
18.2 |
1.0 |
23.1 |
38 |
0.26 |
-- |
0.57/0.76/0.26 |
1141 |
Last modified on 01 November 2002.