16S rRNA Thermus thermophilus Comparative/Crystal Structure Base Triple Frequencies (22/27)
| Triple (1070:1079)1150 |
|---|
| Aln |
AUA |
GCA |
GCC |
GCG |
GCU |
GUA |
UAA |
gap |
Other |
N |
Cov1 |
Cov2 |
Conservation |
Seq |
|---|
| T |
0.3 |
*67.0 |
1.3 |
2.0 |
10.5 |
0.2 |
2.1 |
15.8 |
0.7 |
22 |
-- |
-- |
0.87/0.83/0.38 |
6808 |
| 3 |
0.2 |
*79.4 |
1.6 |
2.4 |
12.7 |
-- |
2.6 |
0.3 |
0.7 |
19 |
-- |
-- |
1.75/1.73/1.15 |
5499 |
| B |
-- |
97.2 |
0.2 |
2.0 |
0.1 |
-- |
-- |
0.1 |
0.3 |
9 |
-- |
-- |
1.96/1.96/1.81 |
4284 |
| A |
5.7 |
18.6 |
-- |
*0.5 |
0.5 |
-- |
*73.7 |
-- |
1.0 |
6 |
0.74 |
-- |
1.00/1.00/1.84 |
194 |
| C |
3.6 |
*78.6 |
-- |
1.8 |
6.5 |
3.0 |
-- |
3.0 |
3.6 |
10 |
0.82 |
-- |
1.39/1.35/1.15 |
168 |
| E |
-- |
16.2 |
8.0 |
4.4 |
*68.0 |
-- |
0.1 |
0.6 |
2.7 |
15 |
-- |
-- |
1.84/1.76/0.66 |
1016 |
| M |
0.3 |
*5.4 |
0.1 |
0.2 |
0.4 |
0.8 |
0.1 |
92.6 |
0.2 |
9 |
0.74 |
-- |
-0.30/-0.34/-0.30 |
1143 |
| Triple (1106:1131)1261 |
|---|
| Aln |
AUA |
CGA |
GCA |
GUA |
UAA |
UCA |
gap |
Other |
N |
Cov1 |
Cov2 |
Conservation |
Seq |
|---|
| T |
2.0 |
0.1 |
*60.9 |
2.0 |
1.4 |
2.0 |
30.3 |
1.3 |
21 |
-- |
-- |
0.13/0.15/0.50 |
7021 |
| 3 |
2.1 |
0.2 |
*72.4 |
2.2 |
1.2 |
2.4 |
18.2 |
1.2 |
19 |
-- |
-- |
0.54/0.59/0.95 |
5709 |
| B |
2.1 |
-- |
*89.0 |
2.6 |
1.5 |
3.1 |
0.2 |
1.5 |
18 |
-- |
-- |
1.51/1.56/1.96 |
4475 |
| A |
15.2 |
4.0 |
73.7 |
5.1 |
-- |
-- |
-- |
2.0 |
8 |
-- |
-- |
1.08/1.01/1.96 |
198 |
| C |
6.5 |
-- |
*71.8 |
8.2 |
0.6 |
-- |
10.0 |
2.9 |
8 |
0.80 |
-- |
0.86/0.69/1.59 |
170 |
| E |
-- |
-- |
0.2 |
-- |
-- |
-- |
99.8 |
-- |
1 |
-- |
-- |
-0.02/-0.04/-0.03 |
1031 |
| M |
0.6 |
-- |
2.0 |
0.1 |
2.5 |
-- |
93.6 |
1.1 |
9 |
-- |
-- |
-0.34/-0.34/-0.28 |
1144 |
| Triple (1109:1127)1128 |
|---|
| Aln |
ACA |
AGA |
AUA |
GAA |
GAU |
GCA |
GCG |
GGA |
GUA |
GUU |
gap |
Other |
N |
CovT1 |
CovT2 |
Conservation |
Seq |
|---|
| T |
1.8 |
4.5 |
0.6 |
14.2 |
0.2 |
*28.4 |
0.1 |
15.0 |
1.4 |
0.1 |
31.9 |
1.8 |
28 |
-- |
-- |
0.10/-0.68/ 0.37 |
7015 |
| 3 |
2.2 |
5.5 |
0.7 |
16.2 |
0.2 |
*34.3 |
0.1 |
18.2 |
1.6 |
-- |
19.3 |
1.7 |
21 |
-- |
-- |
0.49/-0.43/ 0.83 |
5705 |
| B |
2.3 |
7.1 |
0.7 |
20.6 |
0.2 |
*41.7 |
-- |
22.7 |
1.1 |
-- |
1.5 |
2.1 |
21 |
-- |
-- |
1.41/ 0.26/ 1.77 |
4474 |
| A |
11.2 |
-- |
4.1 |
-- |
-- |
44.9 |
2.0 |
11.7 |
22.4 |
-- |
2.6 |
1.0 |
8 |
-- |
-- |
1.33/ 0.48/ 1.59 |
196 |
| C |
0.6 |
1.2 |
1.8 |
*45.6 |
3.0 |
11.2 |
-- |
5.9 |
1.2 |
3.0 |
14.2 |
12.4 |
20 |
0.57 |
-- |
0.43/-0.27/ 0.54 |
169 |
| E |
-- |
-- |
-- |
0.1 |
-- |
0.1 |
-- |
-- |
-- |
-- |
99.8 |
-- |
2 |
-- |
-- |
-0.02/-0.04/-0.05 |
1030 |
| M |
-- |
-- |
0.3 |
0.2 |
-- |
*1.7 |
-- |
-- |
-- |
-- |
96.9 |
1.0 |
9 |
0.64 |
-- |
-0.28/-0.19/-0.17 |
1143 |
| Triple (1110:1125)1113 |
|---|
| Aln |
AUC |
CAA |
CAC |
CAG |
CGC |
CGG |
CGU |
GAU |
GUA |
gap |
Other |
N |
Cov1 |
Cov2 |
Conservation |
Seq |
|---|
| T |
*0.1 |
3.7 |
2.7 |
1.2 |
1.5 |
*41.9 |
11.5 |
*0.3 |
0.1 |
35.1 |
2.0 |
26 |
-- |
-- |
0.36/0.01/-0.53 |
7067 |
| 3 |
-- |
4.5 |
3.4 |
1.4 |
1.7 |
*51.3 |
13.3 |
*0.3 |
0.1 |
21.6 |
2.3 |
23 |
-- |
-- |
0.84/0.42/-0.25 |
5755 |
| B |
-- |
5.7 |
4.2 |
1.7 |
1.3 |
*62.9 |
16.8 |
-- |
-- |
4.5 |
2.8 |
21 |
-- |
-- |
1.81/1.28/0.36 |
4525 |
| A |
-- |
-- |
1.0 |
3.1 |
18.9 |
*56.1 |
1.5 |
*9.7 |
3.1 |
2.6 |
4.1 |
12 |
0.68 |
-- |
1.40/0.84/0.34 |
196 |
| C |
*2.9 |
-- |
-- |
-- |
5.3 |
5.3 |
*27.6 |
-- |
-- |
55.9 |
2.9 |
8 |
0.71 |
-- |
0.52/0.34/-0.73 |
170 |
| E |
-- |
-- |
-- |
-- |
-- |
0.2 |
-- |
-- |
-- |
99.8 |
-- |
1 |
-- |
-- |
-0.02/-0.05/-0.02 |
1030 |
| M |
-- |
0.1 |
-- |
-- |
-- |
0.1 |
-- |
-- |
-- |
99.6 |
0.3 |
4 |
-- |
-- |
-0.21/-0.14/-0.05 |
1143 |
| Triple (1114:1124)1121 |
|---|
| Aln |
CGA |
CGC |
CGG |
CGU |
CUG |
UAU |
gap |
Other |
N |
CovT1 |
CovT2 |
Conservation |
Seq |
|---|
| T |
0.7 |
0.1 |
*36.6 |
22.1 |
0.2 |
*0.3 |
39.3 |
0.8 |
24 |
-- |
-- |
0.28/ 0.28/-0.41 |
7087 |
| 3 |
0.9 |
0.1 |
*44.6 |
27.0 |
0.1 |
*0.2 |
26.4 |
0.7 |
20 |
-- |
-- |
0.78/ 0.80/-0.14 |
5775 |
| B |
0.9 |
0.1 |
*56.6 |
33.9 |
0.1 |
*0.3 |
7.2 |
0.9 |
20 |
-- |
-- |
1.75/ 1.77/ 0.54 |
4543 |
| A |
4.1 |
2.0 |
0.5 |
10.7 |
-- |
-- |
82.2 |
0.5 |
5 |
-- |
-- |
1.03/ 1.03/-0.62 |
197 |
| C |
0.6 |
-- |
*11.8 |
2.9 |
4.7 |
*2.9 |
70.6 |
6.5 |
12 |
0.52 |
-- |
-0.70/-0.77/-0.49 |
170 |
| E |
-- |
-- |
0.2 |
-- |
-- |
-- |
99.8 |
-- |
1 |
-- |
-- |
-0.02/-0.05/-0.02 |
1030 |
| M |
-- |
-- |
*0.1 |
-- |
-- |
-- |
99.8 |
0.1 |
2 |
1.00 |
1.00 |
-0.05/-0.05/-0.06 |
1144 |
Last modified on 01 November 2002.