16S rRNA Thermus thermophilus Comparative/Crystal Structure Base Triple Frequencies (23/27)
| Triple (1142:1157)1163 |
|---|
| Aln |
AAU |
AUA |
AUC |
AUU |
CGU |
GAG |
GCC |
GCU |
UAA |
UAU |
gap |
Other |
N |
Cov1 |
Cov2 |
Conservation |
Seq |
|---|
| T |
0.3 |
0.8 |
0.3 |
*3.1 |
0.4 |
*69.4 |
2.5 |
0.7 |
0.5 |
1.3 |
18.0 |
2.5 |
40 |
0.89 |
-- |
0.54/0.69/0.32 |
7101 |
| 3 |
0.4 |
1.0 |
0.4 |
*3.9 |
0.4 |
*82.1 |
3.1 |
0.8 |
0.6 |
1.6 |
3.5 |
2.2 |
35 |
0.89 |
-- |
1.33/1.12/1.07 |
5788 |
| B |
-- |
-- |
-- |
-- |
-- |
98.9 |
-- |
-- |
-- |
-- |
0.2 |
0.9 |
10 |
-- |
-- |
1.93/1.96/1.98 |
4562 |
| A |
-- |
-- |
-- |
-- |
-- |
96.4 |
-- |
-- |
-- |
-- |
-- |
3.6 |
5 |
-- |
-- |
2.00/1.95/1.77 |
197 |
| C |
-- |
-- |
-- |
-- |
-- |
*87.7 |
-- |
-- |
0.6 |
-- |
3.5 |
8.2 |
8 |
0.92 |
-- |
1.18/1.66/1.62 |
171 |
| E |
2.1 |
5.6 |
2.3 |
*21.7 |
2.5 |
4.8 |
*17.4 |
4.5 |
*3.4 |
9.2 |
18.5 |
8.0 |
30 |
0.52 |
-- |
0.29/-0.47/0.11 |
1024 |
| M |
-- |
*0.2 |
-- |
-- |
-- |
*2.6 |
-- |
0.3 |
0.1 |
-- |
93.4 |
3.4 |
15 |
0.43 |
-- |
-0.29/-0.57/-0.39 |
1144 |
| Triple (1158:1162)1140 |
|---|
| Aln |
AGC |
CUU |
GGC |
GGU |
gap |
Other |
N |
Cov1 |
Cov2 |
Conservation |
Seq |
|---|
| T |
1.5 |
*0.3 |
*80.7 |
0.1 |
15.6 |
1.8 |
29 |
-- |
-- |
1.00/0.91/0.97 |
7127 |
| 3 |
1.8 |
-- |
*95.8 |
0.1 |
0.4 |
2.0 |
19 |
-- |
-- |
1.71/1.87/1.91 |
5813 |
| B |
0.1 |
-- |
99.5 |
-- |
0.2 |
0.1 |
4 |
-- |
-- |
1.97/1.98/1.98 |
4599 |
| A |
-- |
-- |
*99.0 |
-- |
-- |
1.0 |
3 |
1.00 |
1.00 |
1.92/1.95/1.95 |
194 |
| C |
0.6 |
-- |
*89.5 |
2.9 |
5.2 |
1.7 |
6 |
0.95 |
-- |
1.64/1.65/1.32 |
172 |
| E |
9.7 |
-- |
*78.8 |
0.1 |
0.7 |
10.7 |
19 |
0.81 |
-- |
1.00/1.56/1.71 |
1015 |
| M |
0.1 |
*2.0 |
*2.6 |
-- |
94.2 |
1.0 |
13 |
0.80 |
0.80 |
-0.01/-0.58/-0.33 |
1144 |
| Triple (1219:1282)1281 |
|---|
| Aln |
AAU |
ACA |
ACC |
AUA |
AUC |
AUG |
AUU |
gap |
Other |
N |
Cov1 |
Cov2 |
Conservation |
Seq |
|---|
| T |
0.4 |
0.7 |
0.4 |
6.3 |
6.8 |
*69.9 |
0.6 |
13.4 |
1.4 |
21 |
-- |
-- |
1.94/1.02/0.44 |
7092 |
| 3 |
0.4 |
0.8 |
0.1 |
7.0 |
8.1 |
*82.0 |
0.5 |
0.1 |
1.1 |
17 |
-- |
-- |
1.95/1.82/1.11 |
5796 |
| B |
-- |
-- |
-- |
0.1 |
-- |
99.4 |
-- |
-- |
0.5 |
7 |
-- |
-- |
1.97/1.98/1.99 |
4567 |
| A |
-- |
-- |
1.0 |
-- |
0.5 |
98.1 |
-- |
-- |
0.5 |
4 |
-- |
-- |
1.96/1.92/1.89 |
207 |
| C |
-- |
-- |
-- |
1.2 |
-- |
97.7 |
-- |
1.2 |
-- |
2 |
-- |
-- |
1.94/1.94/1.85 |
172 |
| E |
2.1 |
4.4 |
0.4 |
39.1 |
*46.0 |
1.2 |
2.6 |
0.4 |
3.8 |
14 |
0.47 |
-- |
1.90/1.31/0.56 |
1021 |
| M |
0.9 |
0.2 |
2.2 |
3.6 |
1.2 |
3.4 |
1.5 |
83.9 |
3.1 |
14 |
-- |
-- |
1.93/-0.67/-0.88 |
1126 |
| Triple (1223:1276)1283 |
|---|
| Aln |
AUA |
AUG |
AUU |
CGA |
GCA |
GCU |
GUC |
GUU |
UAA |
UAU |
gap |
Other |
N |
CovT1 |
CovT2 |
Conservation |
Seq |
|---|
| T |
3.3 |
9.7 |
0.9 |
0.7 |
0.8 |
7.9 |
16.2 |
*43.4 |
*12.6 |
0.5 |
0.3 |
3.8 |
39 |
0.56 |
-- |
0.73/ 0.82/ 0.29 |
7077 |
| 3 |
3.4 |
11.8 |
0.6 |
-- |
0.8 |
7.7 |
19.8 |
*51.8 |
*0.1 |
0.5 |
0.1 |
3.2 |
28 |
-- |
-- |
1.20/ 1.37/ 0.53 |
5783 |
| B |
-- |
-- |
0.2 |
-- |
0.4 |
7.3 |
25.0 |
*63.7 |
-- |
0.1 |
0.1 |
3.2 |
21 |
-- |
-- |
1.82/ 1.43/ 1.10 |
4555 |
| A |
-- |
-- |
0.5 |
-- |
4.8 |
44.9 |
1.9 |
45.4 |
-- |
-- |
-- |
2.4 |
6 |
-- |
-- |
1.81/ 1.00/ 1.59 |
207 |
| C |
*1.7 |
-- |
4.7 |
-- |
-- |
*50.6 |
1.2 |
38.4 |
-- |
-- |
1.7 |
1.7 |
8 |
0.53 |
-- |
1.45/ 0.90/ 1.69 |
172 |
| E |
19.3 |
*67.0 |
2.8 |
-- |
*2.0 |
2.2 |
0.1 |
-- |
0.5 |
*2.4 |
0.3 |
3.5 |
19 |
0.71 |
-- |
1.40/ 1.44/ 0.75 |
1020 |
| M |
3.1 |
-- |
1.4 |
4.5 |
0.7 |
*2.2 |
0.2 |
0.6 |
*78.7 |
0.5 |
0.9 |
7.0 |
26 |
0.82 |
-- |
1.09/ 1.11/ 1.49 |
1124 |
| Triple (1292:1307)1249 |
|---|
| Aln |
AUA |
AUG |
CGC |
CGU |
GCA |
GCG |
UAA |
UAC |
UAG |
UAU |
gap |
Other |
N |
Cov1 |
Cov2 |
Conservation |
Seq |
|---|
| T |
4.1 |
*45.2 |
*1.0 |
1.5 |
*8.9 |
10.1 |
1.9 |
0.9 |
2.7 |
*2.4 |
16.8 |
4.6 |
47 |
0.69 |
-- |
0.33/0.33/-0.01 |
7160 |
| 3 |
3.4 |
*52.4 |
-- |
-- |
*8.7 |
12.1 |
0.4 |
*0.1 |
3.2 |
-- |
18.8 |
0.9 |
23 |
0.75 |
-- |
0.53/0.50/0.39 |
5846 |
| B |
4.3 |
*66.4 |
-- |
-- |
*7.3 |
14.6 |
0.5 |
*0.1 |
4.0 |
-- |
1.8 |
1.1 |
21 |
0.75 |
-- |
0.87/0.87/1.27 |
4616 |
| A |
-- |
-- |
-- |
-- |
83.6 |
16.4 |
-- |
-- |
-- |
-- |
-- |
-- |
2 |
-- |
-- |
2.00/2.00/1.36 |
201 |
| C |
12.9 |
*78.9 |
-- |
-- |
*0.6 |
-- |
-- |
-- |
-- |
-- |
0.6 |
7.0 |
4 |
0.80 |
-- |
1.95/1.88/1.06 |
171 |
| E |
-- |
0.1 |
-- |
0.1 |
0.2 |
*0.2 |
-- |
-- |
-- |
-- |
99.0 |
0.4 |
6 |
0.50 |
-- |
0.49/0.35/-0.07 |
1028 |
| M |
6.2 |
*3.2 |
*6.0 |
9.1 |
*11.3 |
1.3 |
9.8 |
5.3 |
0.9 |
*14.8 |
9.0 |
23.1 |
43 |
0.39 |
-- |
0.06/-0.07/-0.17 |
1145 |
Last modified on 01 November 2002.