23S rRNA Haloarcula marismortuiComparative/Crystal Structure Base Triple Frequencies (13/13)
| Triple (2713:2767)2681 |
|---|
| Aln |
GCA |
GCU |
GUA |
gap |
Other |
N |
Cov1 |
Cov2 |
Conservation |
Seq |
|---|
| T |
2.2 |
0.1 |
2.9 |
94.6 |
0.1 |
4 |
-- |
-- |
0.33/0.39/-0.20 |
784 |
| 3 |
4.1 |
0.2 |
5.5 |
90.2 |
-- |
3 |
-- |
-- |
1.32/1.26/-0.28 |
419 |
| B |
-- |
-- |
-- |
100.0 |
-- |
0 |
-- |
-- |
1.68/1.68/0.00 |
238 |
| A |
41.5 |
2.4 |
56.1 |
-- |
-- |
3 |
-- |
-- |
2.00/1.01/1.84 |
41 |
| C |
-- |
-- |
-- |
99.0 |
1.0 |
1 |
-- |
-- |
1.23/1.26/-0.06 |
102 |
| E |
-- |
-- |
-- |
100.0 |
-- |
0 |
-- |
-- |
1.69/1.81/0.00 |
140 |
| M |
-- |
-- |
-- |
100.0 |
-- |
0 |
-- |
-- |
0.13/0.14/0.00 |
263 |
| Triple (2717:2763)2720 |
|---|
| Aln |
CAU |
CGA |
CGC |
CGU |
UAC |
UAU |
gap |
Other |
N |
Cov1 |
Cov2 |
Conservation |
Seq |
|---|
| T |
3.7 |
29.5 |
*40.2 |
5.6 |
6.0 |
*7.0 |
5.2 |
2.6 |
16 |
0.50 |
-- |
0.97/0.91/0.22 |
728 |
| 3 |
6.5 |
5.0 |
*57.4 |
9.3 |
8.1 |
*12.2 |
0.2 |
1.2 |
8 |
0.70 |
-- |
1.21/1.07/0.88 |
418 |
| B |
-- |
5.9 |
79.3 |
-- |
13.9 |
-- |
-- |
0.8 |
4 |
-- |
-- |
1.35/1.35/1.68 |
237 |
| A |
-- |
4.9 |
95.1 |
-- |
-- |
-- |
-- |
-- |
2 |
-- |
-- |
2.00/2.00/1.72 |
41 |
| C |
-- |
44.8 |
55.2 |
-- |
-- |
-- |
-- |
-- |
2 |
-- |
-- |
2.00/2.00/1.01 |
58 |
| E |
19.3 |
3.6 |
*9.3 |
27.9 |
1.4 |
*35.7 |
0.7 |
2.1 |
8 |
0.45 |
-- |
0.99/0.90/1.23 |
140 |
| M |
-- |
*66.7 |
8.3 |
0.8 |
*4.0 |
-- |
14.7 |
5.6 |
12 |
0.83 |
-- |
0.63/0.72/0.47 |
252 |
| Triple (2721:2761)2718 |
|---|
| Aln |
CGC |
UAA |
UAC |
gap |
Other |
N |
Cov1 |
Cov2 |
Conservation |
Seq |
|---|
| T |
10.6 |
15.7 |
67.3 |
5.1 |
1.4 |
9 |
-- |
-- |
1.07/1.11/0.95 |
728 |
| 3 |
1.7 |
27.1 |
70.5 |
0.2 |
0.5 |
5 |
-- |
-- |
1.85/1.88/1.09 |
417 |
| B |
-- |
-- |
98.7 |
0.8 |
0.4 |
2 |
-- |
-- |
1.95/1.95/1.93 |
238 |
| A |
9.8 |
-- |
90.2 |
-- |
-- |
2 |
-- |
-- |
1.54/1.54/2.00 |
41 |
| C |
-- |
-- |
100.0 |
-- |
-- |
1 |
-- |
-- |
2.00/2.00/2.00 |
58 |
| E |
*2.2 |
*80.6 |
16.5 |
-- |
0.7 |
4 |
0.83 |
-- |
1.85/1.85/1.25 |
139 |
| M |
27.7 |
0.4 |
54.5 |
14.2 |
3.2 |
8 |
-- |
-- |
0.22/0.28/1.05 |
253 |
| Triple (2730:2752)1810 |
|---|
| Aln |
AUC |
CGA |
CGC |
CGU |
GCA |
GCC |
UAC |
UGU |
gap |
Other |
N |
Cov1 |
Cov2 |
Conservation |
Seq |
|---|
| T |
*25.4 |
4.2 |
0.8 |
*8.2 |
*4.6 |
14.1 |
5.9 |
2.5 |
32.6 |
1.8 |
15 |
0.57 |
-- |
-0.80/-0.77/-0.27 |
733 |
| 3 |
*32.4 |
7.6 |
1.5 |
*14.7 |
*8.1 |
20.4 |
7.6 |
4.4 |
1.7 |
1.5 |
12 |
0.56 |
-- |
0.07/0.10/0.57 |
407 |
| B |
*57.1 |
-- |
-- |
-- |
*13.4 |
17.7 |
10.8 |
-- |
0.4 |
0.4 |
5 |
0.71 |
-- |
0.68/0.64/1.43 |
231 |
| A |
-- |
-- |
-- |
-- |
-- |
100.0 |
-- |
-- |
-- |
-- |
1 |
-- |
-- |
2.00/2.00/2.00 |
41 |
| C |
78.6 |
-- |
-- |
-- |
-- |
12.5 |
7.1 |
-- |
-- |
1.8 |
4 |
-- |
-- |
1.12/1.12/1.86 |
56 |
| E |
-- |
23.0 |
4.4 |
*43.7 |
*2.2 |
0.7 |
*4.4 |
13.3 |
4.4 |
3.7 |
10 |
0.53 |
-- |
0.89/1.16/0.43 |
135 |
| M |
3.7 |
-- |
-- |
-- |
0.4 |
*4.8 |
3.0 |
-- |
85.9 |
2.2 |
7 |
0.42 |
-- |
-0.59/-0.59/-0.46 |
270 |
| Triple (2731:2751)1811 |
|---|
| Aln |
AUA |
AUG |
GCA |
GCG |
GGG |
GUA |
GUG |
gap |
Other |
N |
Cov1 |
Cov2 |
Conservation |
Seq |
|---|
| T |
3.1 |
*0.4 |
*55.3 |
3.4 |
1.1 |
0.8 |
1.4 |
32.1 |
2.5 |
18 |
0.82 |
-- |
0.22/0.03/0.17 |
733 |
| 3 |
3.4 |
*0.7 |
*80.1 |
6.1 |
2.0 |
1.5 |
2.5 |
0.7 |
2.9 |
16 |
0.81 |
-- |
1.65/1.28/1.34 |
407 |
| B |
-- |
-- |
99.6 |
-- |
-- |
-- |
-- |
-- |
0.4 |
2 |
-- |
-- |
2.00/2.00/1.96 |
231 |
| A |
-- |
-- |
100.0 |
-- |
-- |
-- |
-- |
-- |
-- |
1 |
-- |
-- |
2.00/2.00/2.00 |
41 |
| C |
1.8 |
-- |
98.2 |
-- |
-- |
-- |
-- |
-- |
-- |
2 |
-- |
-- |
1.87/1.87/2.00 |
56 |
| E |
10.4 |
*2.2 |
*40.7 |
18.5 |
5.9 |
4.4 |
7.4 |
2.2 |
8.1 |
16 |
0.44 |
-- |
1.21/0.55/0.75 |
135 |
| M |
3.0 |
-- |
*8.9 |
-- |
-- |
-- |
-- |
85.9 |
2.2 |
4 |
0.79 |
0.79 |
-0.54/-0.54/-0.45 |
270 |
| Triple (2732:2750)1815 |
|---|
| Aln |
AUA |
AUU |
CGA |
GCA |
GCC |
UAA |
UGA |
UGC |
UGG |
UGU |
gap |
Other |
N |
Cov1 |
Cov2 |
Conservation |
Seq |
|---|
| T |
0.7 |
*0.5 |
9.5 |
6.7 |
*0.4 |
1.0 |
*45.1 |
1.2 |
1.2 |
0.5 |
32.1 |
1.1 |
16 |
0.68 |
-- |
-0.32/0.02/0.15 |
730 |
| 3 |
1.2 |
*1.0 |
16.1 |
12.1 |
*0.7 |
1.0 |
*61.1 |
2.0 |
2.0 |
-- |
1.0 |
1.7 |
14 |
0.63 |
-- |
0.62/1.20/1.28 |
404 |
| B |
-- |
-- |
2.2 |
-- |
-- |
-- |
94.7 |
-- |
2.6 |
-- |
0.4 |
-- |
3 |
-- |
-- |
1.80/2.00/1.84 |
228 |
| A |
-- |
-- |
2.4 |
-- |
-- |
-- |
73.2 |
19.5 |
4.9 |
-- |
-- |
-- |
4 |
-- |
-- |
1.84/2.00/1.02 |
41 |
| C |
-- |
-- |
-- |
-- |
-- |
3.6 |
85.7 |
1.8 |
1.8 |
7.1 |
-- |
-- |
5 |
-- |
-- |
2.00/1.78/1.44 |
56 |
| E |
3.7 |
*3.0 |
*43.7 |
35.6 |
*2.2 |
3.0 |
1.5 |
-- |
-- |
-- |
2.2 |
5.2 |
12 |
0.50 |
-- |
0.50/0.54/0.81 |
135 |
| M |
-- |
-- |
1.5 |
-- |
-- |
0.4 |
12.6 |
-- |
-- |
-- |
85.2 |
0.4 |
4 |
-- |
-- |
-0.42/-0.40/-0.37 |
270 |
| Triple (2781:2793)2791 |
|---|
| Aln |
UAA |
UAC |
UAU |
gap |
Other |
N |
Cov1 |
Cov2 |
Conservation |
Seq |
|---|
| T |
13.5 |
7.6 |
*72.5 |
2.6 |
3.9 |
15 |
-- |
-- |
1.67/1.57/0.73 |
698 |
| 3 |
-- |
0.5 |
99.5 |
-- |
-- |
2 |
-- |
-- |
2.00/2.00/1.96 |
400 |
| B |
-- |
-- |
99.6 |
0.4 |
-- |
1 |
-- |
-- |
2.00/1.95/2.00 |
229 |
| A |
-- |
-- |
100.0 |
-- |
-- |
1 |
-- |
-- |
2.00/2.00/2.00 |
41 |
| C |
-- |
-- |
96.6 |
-- |
3.4 |
2 |
-- |
-- |
1.78/2.00/2.00 |
58 |
| E |
-- |
1.5 |
98.5 |
-- |
-- |
2 |
-- |
-- |
2.00/2.00/1.89 |
131 |
| M |
*39.6 |
21.2 |
21.7 |
7.5 |
10.0 |
14 |
0.44 |
-- |
1.29/1.02/-0.07 |
240 |
| Triple (2832:2848)2908 |
|---|
| Aln |
AUA |
CAA |
CGA |
CGC |
CGG |
CGU |
GUA |
UGC |
UGU |
UUA |
gap |
Other |
N |
Cov1 |
Cov2 |
Conservation |
Seq |
|---|
| T |
8.0 |
2.6 |
*16.7 |
15.5 |
5.9 |
10.8 |
4.2 |
3.8 |
1.9 |
1.9 |
10.1 |
18.6 |
38 |
0.21 |
-- |
0.11/0.09/-0.33 |
425 |
| 3 |
2.7 |
3.3 |
*21.0 |
20.1 |
7.3 |
12.2 |
0.6 |
4.9 |
2.4 |
1.8 |
3.6 |
20.1 |
34 |
0.24 |
-- |
0.69/0.68/-0.13 |
329 |
| B |
1.5 |
-- |
*30.7 |
26.3 |
10.7 |
17.6 |
-- |
-- |
3.9 |
2.0 |
0.5 |
6.8 |
13 |
-- |
-- |
1.32/1.41/0.11 |
205 |
| A |
5.3 |
-- |
7.9 |
5.3 |
-- |
-- |
5.3 |
*42.1 |
-- |
2.6 |
2.6 |
28.9 |
12 |
0.51 |
-- |
0.26/1.06/0.54 |
38 |
| C |
46.0 |
-- |
-- |
-- |
-- |
-- |
30.0 |
-- |
-- |
2.0 |
12.0 |
10.0 |
7 |
-- |
-- |
0.82/1.40/0.96 |
50 |
| E |
4.6 |
*12.6 |
3.4 |
11.5 |
3.4 |
4.6 |
-- |
-- |
-- |
1.1 |
11.5 |
47.1 |
24 |
0.23 |
-- |
0.53/0.30/-0.47 |
87 |
| M |
*4.3 |
-- |
4.3 |
-- |
2.2 |
*13.0 |
2.2 |
-- |
-- |
2.2 |
54.3 |
17.4 |
10 |
0.38 |
-- |
-0.11/-0.11/-0.58 |
46 |
| Triple (2853:2905)2902 |
|---|
| Aln |
UAA |
UAC |
UAG |
UAU |
gap |
Other |
N |
Cov1 |
Cov2 |
Conservation |
Seq |
|---|
| T |
*65.7 |
7.8 |
0.5 |
0.7 |
24.3 |
1.1 |
7 |
0.87 |
-- |
0.78/0.93/0.23 |
437 |
| 3 |
63.7 |
6.4 |
0.3 |
0.9 |
28.4 |
0.3 |
5 |
-- |
-- |
0.72/0.89/0.17 |
342 |
| B |
98.1 |
1.5 |
0.5 |
-- |
-- |
-- |
3 |
-- |
-- |
2.00/2.00/1.85 |
206 |
| A |
42.1 |
50.0 |
-- |
7.9 |
-- |
-- |
3 |
-- |
-- |
2.00/2.00/0.69 |
38 |
| C |
*72.0 |
24.0 |
-- |
-- |
-- |
4.0 |
3 |
0.76 |
-- |
1.77/1.76/0.98 |
50 |
| E |
1.0 |
-- |
-- |
-- |
98.0 |
1.0 |
2 |
-- |
-- |
-0.03/-0.14/-0.19 |
98 |
| M |
73.3 |
-- |
2.2 |
-- |
20.0 |
4.4 |
3 |
-- |
-- |
0.85/0.75/0.73 |
45 |
| Triple (2855:2903)2852 |
|---|
| Aln |
AUA |
AUG |
AUU |
GCA |
GCC |
GCU |
UAA |
gap |
Other |
N |
Cov1 |
Cov2 |
Conservation |
Seq |
|---|
| T |
0.7 |
0.7 |
*2.5 |
*73.0 |
2.5 |
1.6 |
1.1 |
16.2 |
1.6 |
14 |
0.90 |
-- |
1.07/1.07/0.38 |
437 |
| 3 |
0.6 |
0.9 |
*3.2 |
*70.5 |
3.2 |
1.2 |
-- |
18.7 |
1.8 |
12 |
0.91 |
-- |
1.11/1.15/0.19 |
342 |
| B |
-- |
-- |
-- |
100.0 |
-- |
-- |
-- |
-- |
-- |
1 |
-- |
-- |
1.96/2.00/2.00 |
206 |
| A |
-- |
-- |
-- |
92.1 |
-- |
7.9 |
-- |
-- |
-- |
2 |
-- |
-- |
2.00/2.00/1.61 |
38 |
| C |
-- |
-- |
-- |
98.0 |
-- |
-- |
-- |
-- |
2.0 |
2 |
-- |
-- |
2.00/1.86/2.00 |
50 |
| E |
2.0 |
3.1 |
*11.2 |
1.0 |
*11.2 |
1.0 |
-- |
64.3 |
6.1 |
12 |
0.66 |
0.66 |
0.36/0.37/-0.86 |
98 |
| M |
2.2 |
-- |
-- |
64.4 |
-- |
6.7 |
11.1 |
15.6 |
-- |
4 |
-- |
-- |
0.56/0.54/0.75 |
45 |
| Triple (2869:2888)2740 |
|---|
| Aln |
AUC |
CGC |
GCA |
GCC |
GCU |
GUA |
GUC |
GUG |
GUU |
UUC |
gap |
Other |
N |
Cov1 |
Cov2 |
Conservation |
Seq |
|---|
| T |
3.9 |
0.8 |
7.9 |
2.2 |
1.9 |
0.9 |
*37.2 |
3.9 |
0.6 |
0.9 |
35.3 |
4.5 |
28 |
0.58 |
-- |
0.93/0.70/-0.46 |
643 |
| 3 |
1.7 |
1.4 |
14.4 |
3.4 |
3.4 |
0.8 |
*58.6 |
7.1 |
1.1 |
1.7 |
1.7 |
4.5 |
21 |
0.01 |
-- |
1.37/0.95/0.57 |
353 |
| B |
1.0 |
-- |
-- |
0.5 |
-- |
1.0 |
94.2 |
-- |
-- |
2.4 |
1.0 |
-- |
5 |
-- |
-- |
1.76/1.86/1.93 |
206 |
| A |
-- |
*10.5 |
-- |
7.9 |
-- |
2.6 |
31.6 |
*36.8 |
10.5 |
-- |
-- |
-- |
6 |
0.47 |
-- |
1.51/1.13/0.43 |
38 |
| C |
30.0 |
-- |
-- |
4.0 |
-- |
-- |
54.0 |
-- |
-- |
-- |
6.0 |
6.0 |
5 |
-- |
-- |
0.91/1.44/1.50 |
50 |
| E |
*3.7 |
0.9 |
*45.9 |
7.3 |
11.0 |
-- |
1.8 |
10.1 |
-- |
0.9 |
3.7 |
14.7 |
19 |
0.51 |
-- |
0.91/0.78/0.21 |
109 |
| M |
1.7 |
-- |
-- |
-- |
-- |
1.2 |
*2.1 |
-- |
-- |
-- |
90.8 |
4.2 |
10 |
0.41 |
-- |
-0.45/-0.36/-0.57 |
240 |
Last modified on 26 July 2002.