Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1C04 BPC Identified: 48 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
rRNA 1C04 1!E:58!E G:U Wb [cWW][XXVIII] 10.31 39.25; 66.77 27.52 -8.67 0.64 27.93
rRNA 1C04 2!E:57!E C:G WC [cWW][XIX] 10.34 56.48; 54.61 1.88 -14.25 0.25 14.97
rRNA 1C04 3!E:56!E C:G WC [cWW][XIX] 10.33 56.37; 50.92 5.45 -1.79 0.21 11.22
rRNA 1C04 4!E:55!E A:U WC [cWW][XX] 10.61 56.58; 58.4 1.82 0.5 0.1 5.4
rRNA 1C04 5!E:54!E G:C WC [cWW][XIX] 10.51 54.77; 55.47 0.71 2.62 0.06 19.65
rRNA 1C04 5!E:35!E G:A rS [tSS][-] 8.02 86.63; 63.33 23.3 159.55 0.14 21.0
rRNA 1C04 6!E:53!E G:A S [tSH][XI] 9.31 96.99; 8.61 88.39 -2.9 0.77 18.54
rRNA 1C04 7!E:31!E A:U WC [cWW][XX] 10.49 53.84; 51.24 2.6 -25.97 0.58 37.93
rRNA 1C04 8!E:30!E U:A WC [cWW][XX] 10.33 53.71; 54.26 0.55 -6.31 0.28 16.38
rRNA 1C04 9!E:29!E G:C WC [cWW][XIX] 10.81 52.31; 52.39 0.08 0.87 0.36 11.73
rRNA 1C04 10!E:38!E U:A H_1 [cWH][XXIII] 8.42 60.04; 49.28 10.75 -3.12 0.22 10.39
rRNA 1C04 12!E:26!E G:C WC [cWW][XIX] 10.66 46.77; 52.32 5.55 -2.98 0.38 19.14
rRNA 1C04 13!E:25!E G:C WC [cWW][XIX] 10.47 49.62; 59.74 10.11 -15.95 0.02 17.44
rRNA 1C04 14!E:24!E C:G WC [cWW][XIX] 10.65 58.02; 55.34 2.68 -13.37 0.29 18.8
rRNA 1C04 15!E:23!E U:A sWC [---][-] 10.89 84.94; 22.53 62.41 -1.94 0.41 20.15
rRNA 1C04 16!E:18!E U:G S(sb:O2*-N7)_1 [---][-] 7.1 81.83; 39.38 42.45 -179.55 2.47 15.07
rRNA 1C04 21!E:50!E G:C srWC* [---][-] 14.13 12.36; 3.43 8.93 3.24 0.38 3.81
rRNA 1C04 21!E:41!E G:G H_1 [cWH][VI] 11.81 56.59; 24.92 31.67 -7.09 0.1 9.88
rRNA 1C04 22!E:49!E C:G rH_2 [---][-] 13.82 18.64; 8.1 10.54 37.88 0.17 5.08
rRNA 1C04 22!E:42!E C:C H_1 [---][-] 9.88 67.38; 33.36 34.03 0.59 0.19 8.28
rRNA 1C04 27!E:38!E A:A fS(sb:O2*-N1)_1 [---][-] 9.08 49.55; 79.07 29.53 -164.63 1.66 29.33
rRNA 1C04 32!E:36!E U:A rWC [tWW][XXI] 11.01 35.4; 35.2 0.2 142.37 0.25 16.74
rRNA 1C04 33!E:35!E U:A S(sb:O2*-N7) [---][-] 6.53 86.71; 38.31 48.41 -165.65 0.04 25.7
rRNA 1C04 34!E:55!E A:U rpS(sb:O2*-N3) [cSS][-] 5.39 87.1; 156.57 69.47 -61.72 1.09 41.98
rRNA 1C04 35!E:54!E A:C rpS(bs:O2-O2*) [cSS][-] 5.68 147.48; 104.11 43.36 -59.33 1.75 5.81
rRNA 1C04 36!E:53!E A:A pfS(sb:O2*-N1) [---][-] 8.62 161.41; 38.59 122.82 44.4 0.39 19.45
rRNA 1C04 37!E:52!E G:C Wb [---][-] 10.69 42.63; 55.63 13.0 -9.85 0.21 5.41
rRNA 1C04 39!E:40!E A:A pS [cSH][-] 6.48 142.68; 36.61 106.07 -2.62 0.34 16.98
rRNA 1C04 40!E:51!E A:U WC [cWW][XX] 10.02 55.39; 59.63 4.24 -3.26 0.74 17.73
rRNA 1C04 41!E:50!E G:C WC [cWW][XIX] 10.39 54.9; 57.99 3.09 5.84 0.11 10.17
rRNA 1C04 42!E:49!E C:G WC [cWW][XIX] 10.44 52.33; 52.57 0.24 6.55 0.48 3.7
rRNA 1C04 43!E:48!E G:A S [tSH][XI] 9.4 91.76; 12.9 78.86 23.41 0.26 9.63
rRNA 1C04 1!F:29!F G:C WC [cWW][XIX] 10.57 53.93; 55.76 1.83 -0.26 0.14 4.19
rRNA 1C04 2!F:28!F G:C WC [cWW][XIX] 10.35 53.95; 55.91 1.96 -8.3 0.23 15.55
rRNA 1C04 3!F:27!F G:C WC [cWW][XIX] 10.68 56.23; 50.48 5.75 -3.21 0.15 2.68
rRNA 1C04 4!F:26!F U:A WC [cWW][XX] 10.29 60.47; 56.1 4.37 -6.69 0.19 9.27
rRNA 1C04 5!F:25!F G:C WC [cWW][XIX] 10.7 53.76; 54.99 1.23 -1.77 0.16 11.67
rRNA 1C04 6!F:24!F C:G WC [cWW][XIX] 10.63 55.12; 53.51 1.61 4.43 0.33 11.55
rRNA 1C04 7!F:23!F U:C sWC [---][-] 10.65 80.5; 11.9 68.6 6.68 0.13 18.76
rRNA 1C04 9!F:21!F A:A rS* [tHH][-] 10.97 13.5; 15.28 1.79 -116.07 0.59 15.81
rRNA 1C04 10!F:20!F G:A S(bp:N1-O2P)_3 [---][-] 10.4 80.84; 58.7 22.14 -177.49 1.17 15.91
rRNA 1C04 10!F:11!F G:U pS* [cHS][-] 6.88 144.81; 47.5 97.31 8.87 0.03 6.79
rRNA 1C04 11!F:21!F U:A rH_1_Mo [tWH][XXIV] 11.14 51.67; 14.83 36.84 -96.48 1.08 16.49
rRNA 1C04 11!F:20!F U:A rH_1 [tWH][XXIV] 9.69 28.2; 19.05 9.15 173.06 0.34 22.12
rRNA 1C04 12!F:19!F A:G S [tSH][XI] 9.5 17.27; 103.93 86.66 -2.58 0.2 14.15
rRNA 1C04 13!F:18!F C:G WC [cWW][XIX] 10.69 55.95; 53.27 2.68 -8.65 0.26 7.75
rRNA 1C04 14!F:17!F G:A S [tSH][XI] 9.5 95.72; 6.97 88.75 -71.83 0.15 19.68
rRNA 1C04 14!F:16!F G:G S(sb:O2*-N7)_1 [---][-] 7.69 90.75; 31.75 59.0 -168.6 1.93 32.77