Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1D4R BPC Identified: 29 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
SRP_RNA 1D4R 1!A:28!B G:U Wb [cWW][XXVIII] 10.36 44.52; 69.08 24.56 -5.32 0.33 14.83
SRP_RNA 1D4R 2!A:27!B G:C WC [cWW][XIX] 10.63 55.05; 54.95 0.1 -10.85 0.05 15.51
SRP_RNA 1D4R 3!A:26!B U:A WC [cWW][XX] 10.36 56.46; 55.05 1.41 -8.9 0.12 11.51
SRP_RNA 1D4R 4!A:25!B G:C WC [cWW][XIX] 10.41 55.62; 55.42 0.2 -11.79 0.1 17.08
SRP_RNA 1D4R 5!A:24!B A:C Wb [cWW][-] 10.15 44.54; 74.58 30.04 -10.02 0.26 12.07
SRP_RNA 1D4R 6!A:23!B C:A Wb* [cWW][-] 10.51 53.1; 71.55 18.46 -11.54 0.33 21.57
SRP_RNA 1D4R 7!A:22!B C:G WC [cWW][XIX] 10.51 59.51; 53.57 5.95 -8.67 0.2 16.49
SRP_RNA 1D4R 8!A:21!B U:G Wb [cWW][XXVIII] 10.13 72.07; 42.13 29.94 -3.91 0.1 10.82
SRP_RNA 1D4R 9!A:20!B C:G WC [cWW][XIX] 10.57 51.53; 56.38 4.85 -5.38 0.26 16.39
SRP_RNA 1D4R 10!A:19!B C:G WC [cWW][XIX] 10.79 52.98; 54.08 1.1 -1.91 0.31 13.99
SRP_RNA 1D4R 11!A:18!B C:G WC [cWW][XIX] 10.59 53.32; 56.06 2.73 -0.38 0.33 7.38
SRP_RNA 1D4R 12!A:17!B G:C WC [cWW][XIX] 10.58 55.54; 54.48 1.06 -6.21 0.33 14.85
SRP_RNA 1D4R 13!A:16!B G:G Wb [---][-] 13.41 13.79; 47.26 33.47 12.39 0.02 5.87
SRP_RNA 1D4R 14!A:15!B G:A WC_mo [cWW][VIII] 14.89 27.34; 25.52 1.82 2.55 0.71 14.08
SRP_RNA 1D4R 16!A:13!B G:G Wb [---][-] 13.71 39.89; 9.68 30.21 24.35 0.15 9.08
SRP_RNA 1D4R 17!A:12!B C:G WC [cWW][XIX] 10.52 56.38; 49.37 7.01 -3.88 0.14 7.76
SRP_RNA 1D4R 18!A:11!B G:C WC [cWW][XIX] 10.44 53.81; 54.54 0.73 -4.12 0.19 10.09
SRP_RNA 1D4R 19!A:10!B G:C WC [cWW][XIX] 10.58 56.45; 54.2 2.25 -3.54 0.19 10.77
SRP_RNA 1D4R 20!A:9!B G:C WC [cWW][XIX] 10.53 57.01; 56.01 1.0 -0.26 0.05 5.77
SRP_RNA 1D4R 21!A:8!B G:U Wb [cWW][XXVIII] 10.39 41.73; 68.03 26.3 -3.31 0.33 9.01
SRP_RNA 1D4R 22!A:7!B G:C WC [cWW][XIX] 10.42 54.53; 57.51 2.97 -5.54 0.12 11.78
SRP_RNA 1D4R 23!A:6!B A:C Wb [cWW][-] 10.11 47.88; 72.98 25.09 -12.55 0.1 10.36
SRP_RNA 1D4R 24!A:5!B C:A Wb [cWW][-] 10.25 71.98; 46.2 25.79 -6.72 0.36 10.0
SRP_RNA 1D4R 25!A:4!B C:G WC [cWW][XIX] 10.62 54.47; 57.53 3.06 -6.47 0.07 7.16
SRP_RNA 1D4R 26!A:3!B A:U WC [cWW][XX] 10.64 53.89; 55.55 1.65 -7.72 0.06 16.75
SRP_RNA 1D4R 27!A:2!B C:G WC [cWW][XIX] 10.77 53.56; 53.56 0.0 -12.45 0.02 17.05
SRP_RNA 1D4R 28!A:1!B U:G Wb [cWW][XXVIII] 10.42 68.28; 40.78 27.5 -8.2 0.52 16.37
SRP_RNA 1D4R 28!A:29!A U:A S(sb:O2*-N7) [---][-] 7.61 117.69; 41.79 75.9 -114.19 2.39 69.33
SRP_RNA 1D4R 25!B:11!C C:C rS(ps:O1P-O2*) [---][-] 7.23 122.22; 138.4 16.17 143.13 0.07 28.21