Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1DDY BPC Identified: 65 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
RNA_aptamer 1DDY 7!A:22!A G:C WC [cWW][XIX] 10.93 50.85; 44.4 6.45 -12.27 0.1 14.87
RNA_aptamer 1DDY 8!A:25!A G:A rS [tSS][-] 8.18 93.23; 57.58 35.65 150.01 1.42 44.21
RNA_aptamer 1DDY 8!A:21!A G:C WC [cWW][XIX] 10.41 57.37; 51.61 5.76 -21.98 0.16 28.62
RNA_aptamer 1DDY 9!A:20!A U:A WC [cWW][XX] 10.75 49.67; 48.56 1.11 -9.19 0.26 22.95
RNA_aptamer 1DDY 10!A:28!A G:G H_1 [cWH][VI] 11.48 60.98; 25.31 35.68 11.04 0.55 21.34
RNA_aptamer 1DDY 11!A:30!A C:G WC [cWW][XIX] 10.67 57.09; 47.47 9.61 -26.92 0.37 28.28
RNA_aptamer 1DDY 11!A:27!A C:U pfS*_1 [cWS][-] 8.45 90.6; 23.45 67.16 -114.16 0.29 33.54
RNA_aptamer 1DDY 12!A:33!A G:C WC [cWW][XIX] 10.33 53.22; 57.25 4.03 -17.19 0.01 19.95
RNA_aptamer 1DDY 13!A:32!A C:G WC [cWW][XIX] 10.54 53.94; 51.94 2.0 -10.02 0.3 16.6
RNA_aptamer 1DDY 14!A:31!A A:A rWb* [tWW][I] 13.61 36.16; 18.54 17.62 132.55 0.05 22.13
RNA_aptamer 1DDY 15!A:29!A U:C WC_mo [cWW][XVIII] 12.29 36.24; 31.31 4.93 2.88 0.24 12.09
RNA_aptamer 1DDY 15!A:27!A U:U rH_1 [tWH][-] 10.72 10.74; 28.91 18.17 141.04 0.69 44.75
RNA_aptamer 1DDY 17!A:29!A A:C sWb [---][-] 10.85 29.22; 82.44 53.22 4.55 0.15 10.8
RNA_aptamer 1DDY 18!A:28!A C:G WC [cWW][XIX] 10.37 56.87; 56.7 0.17 -11.05 0.27 18.67
RNA_aptamer 1DDY 19!A:26!A C:G WC [cWW][XIX] 10.61 53.18; 52.5 0.68 -5.94 0.04 12.66
RNA_aptamer 1DDY 21!A:25!A C:A rpS(bs:O2-O2*) [cSS][-] 6.18 102.7; 143.7 40.99 -39.37 1.77 15.81
RNA_aptamer 1DDY 27!A:29!A U:C pS [cSH][-] 8.73 106.55; 27.78 78.77 10.44 1.27 56.61
RNA_aptamer 1DDY 207!C:223!C G:U S*_1 [---][-] 12.03 80.55; 20.32 60.23 -104.58 1.41 60.48
RNA_aptamer 1DDY 207!C:222!C G:C WC [cWW][XIX] 10.56 52.18; 52.62 0.44 -6.72 0.49 2.51
RNA_aptamer 1DDY 208!C:225!C G:A rS [tSS][-] 7.93 89.86; 59.79 30.06 156.94 0.86 42.5
RNA_aptamer 1DDY 208!C:221!C G:C WC [cWW][XIX] 10.28 58.27; 56.69 1.58 -8.26 0.2 27.92
RNA_aptamer 1DDY 209!C:220!C U:A WC [cWW][XX] 10.79 55.08; 51.45 3.63 -4.59 0.7 20.27
RNA_aptamer 1DDY 210!C:228!C G:G H_1 [cWH][VI] 11.7 61.84; 24.95 36.89 12.36 0.43 17.36
RNA_aptamer 1DDY 210!C:218!C G:C rH* [---][-] 14.23 16.44; 6.6 9.84 93.32 0.31 20.15
RNA_aptamer 1DDY 211!C:230!C C:G WC [cWW][XIX] 10.97 51.17; 53.59 2.42 -27.29 0.66 22.15
RNA_aptamer 1DDY 212!C:233!C G:C WC [cWW][XIX] 10.33 51.35; 59.23 7.88 -12.6 0.02 13.86
RNA_aptamer 1DDY 213!C:232!C C:G WC [cWW][XIX] 10.34 55.41; 53.26 2.14 -12.16 0.52 16.67
RNA_aptamer 1DDY 214!C:231!C A:A rWb* [tWW][I] 13.68 33.68; 20.39 13.29 130.1 0.22 17.6
RNA_aptamer 1DDY 215!C:229!C U:C WC_mo [cWW][XVIII] 12.43 34.61; 29.53 5.08 -2.84 0.12 3.41
RNA_aptamer 1DDY 215!C:227!C U:U rH_1 [tWH][-] 10.86 11.23; 28.61 17.38 156.2 0.79 46.64
RNA_aptamer 1DDY 217!C:229!C A:C sWb [---][-] 10.68 28.91; 81.54 52.63 2.85 0.5 16.64
RNA_aptamer 1DDY 218!C:429!E C:C rpS(ss:O2*-O2*) [---][-] 5.62 161.36; 155.32 6.04 -96.83 0.13 67.8
RNA_aptamer 1DDY 218!C:228!C C:G WC [cWW][XIX] 10.58 50.69; 56.16 5.47 -3.14 1.08 28.59
RNA_aptamer 1DDY 219!C:226!C C:G WC [cWW][XIX] 10.75 53.97; 55.15 1.18 -1.04 0.48 17.3
RNA_aptamer 1DDY 227!C:229!C U:C pS [cSH][-] 8.98 105.57; 29.61 75.96 10.1 0.98 48.59
RNA_aptamer 1DDY 407!E:423!E G:U S*_1 [---][-] 11.83 84.35; 18.39 65.96 -88.58 1.48 49.33
RNA_aptamer 1DDY 407!E:422!E G:C WC [cWW][XIX] 10.36 55.75; 52.9 2.85 -7.54 0.21 10.95
RNA_aptamer 1DDY 408!E:425!E G:A rS [tSS][-] 8.41 92.85; 58.12 34.73 150.52 1.07 34.94
RNA_aptamer 1DDY 408!E:421!E G:C WC [cWW][XIX] 10.33 59.96; 54.7 5.26 -14.7 0.61 34.9
RNA_aptamer 1DDY 409!E:420!E U:A WC [cWW][XX] 10.65 55.95; 54.19 1.76 -9.91 0.27 17.87
RNA_aptamer 1DDY 410!E:428!E G:G H_1 [cWH][VI] 11.67 63.27; 26.57 36.7 10.39 0.51 15.97
RNA_aptamer 1DDY 411!E:430!E C:G WC [cWW][XIX] 10.83 47.61; 50.31 2.7 -26.99 0.4 26.03
RNA_aptamer 1DDY 412!E:433!E G:C WC [cWW][XIX] 10.72 48.86; 52.5 3.64 -17.09 0.25 23.72
RNA_aptamer 1DDY 413!E:432!E C:G WC [cWW][XIX] 10.51 58.2; 50.25 7.95 -16.69 0.35 20.87
RNA_aptamer 1DDY 414!E:431!E A:A rWb* [tWW][I] 13.57 35.47; 21.73 13.74 125.64 0.09 21.55
RNA_aptamer 1DDY 415!E:429!E U:C WC_mo [cWW][XVIII] 12.29 37.19; 31.5 5.69 -1.76 0.25 6.17
RNA_aptamer 1DDY 415!E:427!E U:U rH_1 [tWH][-] 10.89 7.83; 29.32 21.49 152.23 0.65 56.16
RNA_aptamer 1DDY 417!E:429!E A:C sWb [---][-] 10.81 29.89; 81.59 51.71 6.84 0.59 14.15
RNA_aptamer 1DDY 418!E:428!E C:G WC [cWW][XIX] 10.22 60.74; 54.66 6.08 -8.1 0.99 25.49
RNA_aptamer 1DDY 419!E:426!E C:G WC [cWW][XIX] 10.82 50.8; 55.7 4.9 -5.39 0.41 30.0
RNA_aptamer 1DDY 607!G:622!G G:C WC [cWW][XIX] 10.71 49.29; 48.49 0.79 -10.92 0.15 18.07
RNA_aptamer 1DDY 608!G:625!G G:A rS [tSS][-] 8.35 89.6; 51.41 38.19 147.62 1.08 50.7
RNA_aptamer 1DDY 608!G:621!G G:C WC [cWW][XIX] 10.42 54.32; 48.2 6.12 -21.37 0.38 30.92
RNA_aptamer 1DDY 609!G:620!G U:A WC [cWW][XX] 11.02 49.14; 49.45 0.31 -16.09 0.04 22.83
RNA_aptamer 1DDY 610!G:628!G G:G H_1 [cWH][VI] 11.59 61.88; 22.36 39.52 9.23 0.54 14.71
RNA_aptamer 1DDY 611!G:630!G C:G WC [cWW][XIX] 10.9 51.46; 52.58 1.12 -23.24 0.24 20.26
RNA_aptamer 1DDY 612!G:633!G G:C WC [cWW][XIX] 10.56 52.89; 60.0 7.12 -15.78 0.38 13.58
RNA_aptamer 1DDY 613!G:632!G C:G WC [cWW][XIX] 10.71 52.7; 53.29 0.6 -5.28 0.04 10.27
RNA_aptamer 1DDY 614!G:631!G A:A rWb* [tWW][I] 13.48 39.69; 23.04 16.66 141.57 0.05 26.03
RNA_aptamer 1DDY 615!G:629!G U:C WC_mo [cWW][XVIII] 12.44 34.02; 30.15 3.87 4.72 0.2 9.34
RNA_aptamer 1DDY 615!G:627!G U:U rH_1 [tWH][-] 10.96 12.14; 27.11 14.97 137.24 0.72 36.59
RNA_aptamer 1DDY 617!G:629!G A:C sWb [---][-] 10.95 28.03; 79.47 51.44 10.06 0.58 11.14
RNA_aptamer 1DDY 618!G:628!G C:G WC [cWW][XIX] 10.55 51.01; 57.91 6.9 -3.4 0.75 20.46
RNA_aptamer 1DDY 619!G:626!G C:G WC [cWW][XIX] 10.57 55.12; 52.45 2.67 -1.56 0.05 11.47
RNA_aptamer 1DDY 627!G:629!G U:C H_2 [---][-] 8.86 103.52; 29.27 74.25 1.2 0.92 42.63