Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1DQF
BPC Identified: 9
Ambiguities: 0
| rRNA |
1DQF |
1!A:19!B |
G:C |
WC [cWW][XIX] |
10.55 |
52.02; 58.45 |
6.43 |
-12.12 |
0.06 |
15.14 |
| rRNA |
1DQF |
2!A:18!B |
C:G |
WC [cWW][XIX] |
10.53 |
56.64; 54.28 |
2.36 |
-8.16 |
0.63 |
18.76 |
| rRNA |
1DQF |
3!A:17!B |
C:G |
WC [cWW][XIX] |
10.42 |
54.47; 52.92 |
1.55 |
-4.29 |
0.14 |
11.12 |
| rRNA |
1DQF |
4!A:15!B |
A:U |
WC [cWW][XX] |
10.29 |
56.02; 53.15 |
2.87 |
-13.12 |
0.22 |
13.17 |
| rRNA |
1DQF |
5!A:14!B |
C:G |
WC [cWW][XIX] |
10.19 |
54.88; 52.01 |
2.86 |
-19.33 |
0.6 |
21.29 |
| rRNA |
1DQF |
6!A:13!B |
C:G |
WC [cWW][XIX] |
10.2 |
56.16; 55.72 |
0.43 |
-9.68 |
0.11 |
12.29 |
| rRNA |
1DQF |
7!A:12!B |
C:G |
WC [cWW][XIX] |
10.44 |
56.01; 55.24 |
0.77 |
-10.02 |
0.13 |
10.01 |
| rRNA |
1DQF |
8!A:11!B |
U:A |
WC [cWW][XX] |
10.17 |
54.84; 58.83 |
3.99 |
-8.88 |
0.01 |
13.06 |
| rRNA |
1DQF |
9!A:10!B |
G:C |
WC [cWW][XIX] |
10.47 |
57.5; 58.77 |
1.28 |
-11.41 |
0.55 |
16.98 |