Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1DUL
BPC Identified: 23
Ambiguities: 0
| SRP_RNA |
1DUL |
130!B:178!B |
G:C |
WC [cWW][XIX] |
10.64 |
51.89; 55.48 |
3.59 |
-9.33 |
0.84 |
10.06 |
| SRP_RNA |
1DUL |
131!B:177!B |
G:C |
WC [cWW][XIX] |
10.49 |
53.68; 57.5 |
3.82 |
-12.4 |
0.01 |
14.79 |
| SRP_RNA |
1DUL |
132!B:176!B |
C:G |
WC [cWW][XIX] |
10.57 |
56.24; 53.32 |
2.92 |
-10.23 |
0.13 |
15.6 |
| SRP_RNA |
1DUL |
133!B:175!B |
U:A |
WC [cWW][XX] |
10.42 |
55.68; 57.11 |
1.43 |
-10.53 |
0.12 |
15.1 |
| SRP_RNA |
1DUL |
134!B:174!B |
C:G |
WC [cWW][XIX] |
10.56 |
56.06; 53.42 |
2.63 |
-10.75 |
0.07 |
13.51 |
| SRP_RNA |
1DUL |
135!B:173!B |
U:A |
WC [cWW][XX] |
10.48 |
55.66; 55.91 |
0.25 |
-13.0 |
0.21 |
13.39 |
| SRP_RNA |
1DUL |
136!B:172!B |
G:C |
WC [cWW][XIX] |
10.72 |
53.43; 54.55 |
1.12 |
-12.5 |
0.01 |
14.89 |
| SRP_RNA |
1DUL |
137!B:171!B |
U:G |
Wb [cWW][XXVIII] |
10.33 |
67.94; 42.33 |
25.61 |
-13.66 |
0.61 |
17.43 |
| SRP_RNA |
1DUL |
138!B:170!B |
U:G |
Wb [cWW][XXVIII] |
10.37 |
67.38; 42.93 |
24.45 |
-14.4 |
0.11 |
22.73 |
| SRP_RNA |
1DUL |
139!B:169!B |
U:A |
WC [cWW][XX] |
10.69 |
55.41; 52.32 |
3.08 |
-6.74 |
0.09 |
8.65 |
| SRP_RNA |
1DUL |
140!B:164!B |
A:A |
rS(sp:O2*-O1P) [---][-] |
9.44 |
159.83; 120.46 |
39.37 |
92.7 |
0.59 |
65.37 |
| SRP_RNA |
1DUL |
144!B:167!B |
G:C |
WC [cWW][XIX] |
10.43 |
55.77; 58.54 |
2.77 |
-7.84 |
0.32 |
14.09 |
| SRP_RNA |
1DUL |
145!B:166!B |
G:C |
WC [cWW][XIX] |
10.66 |
55.03; 55.0 |
0.03 |
-11.36 |
0.96 |
23.12 |
| SRP_RNA |
1DUL |
146!B:165!B |
U:G |
Wb [cWW][XXVIII] |
10.77 |
64.04; 39.05 |
25.0 |
-9.28 |
0.02 |
13.05 |
| SRP_RNA |
1DUL |
147!B:164!B |
C:A |
S [tSH][-] |
9.73 |
83.38; 4.23 |
79.16 |
-86.18 |
0.09 |
9.87 |
| SRP_RNA |
1DUL |
148!B:163!B |
A:C |
rH_1 [rWH][XXV] |
11.05 |
6.58; 25.51 |
18.93 |
-164.25 |
0.44 |
16.1 |
| SRP_RNA |
1DUL |
148!B:162!B |
A:G |
S(bp:N1-O2P)_2 [---][-] |
12.09 |
36.99; 63.88 |
26.89 |
160.4 |
1.48 |
16.63 |
| SRP_RNA |
1DUL |
149!B:162!B |
G:G |
S_1 [tSH][-] |
11.63 |
9.97; 84.39 |
74.42 |
-23.98 |
0.21 |
10.01 |
| SRP_RNA |
1DUL |
150!B:161!B |
G:A |
WC [cWW][VIII] |
12.77 |
45.99; 49.86 |
3.87 |
-1.92 |
0.06 |
16.94 |
| SRP_RNA |
1DUL |
151!B:160!B |
U:A |
WC [cWW][XX] |
10.68 |
53.36; 54.08 |
0.72 |
-7.01 |
0.64 |
15.54 |
| SRP_RNA |
1DUL |
152!B:159!B |
C:G |
WC [cWW][XIX] |
10.57 |
56.11; 54.45 |
1.65 |
-4.91 |
0.21 |
12.49 |
| SRP_RNA |
1DUL |
153!B:158!B |
C:G |
WC [cWW][XIX] |
10.56 |
56.99; 53.3 |
3.69 |
1.5 |
0.15 |
5.65 |
| SRP_RNA |
1DUL |
154!B:157!B |
G:A |
S [tSH][XI] |
9.13 |
98.88; 12.43 |
86.45 |
-83.65 |
0.68 |
15.4 |