Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1DUQ BPC Identified: 45 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
vRNA 1DUQ 101!A:130!B G:C WC [cWW][XIX] 10.48 54.36; 55.55 1.19 -10.02 0.26 10.57
vRNA 1DUQ 102!A:129!B C:G WC [cWW][XIX] 10.56 53.3; 53.9 0.6 -11.77 0.05 13.13
vRNA 1DUQ 103!A:128!B U:A WC [cWW][XX] 10.43 54.31; 53.46 0.85 -9.24 0.1 5.97
vRNA 1DUQ 104!A:127!B G:C WC [cWW][XIX] 10.55 57.08; 54.42 2.66 -13.47 0.19 20.88
vRNA 1DUQ 105!A:126!B G:A WC [cWW][VIII] 12.69 46.26; 48.73 2.47 2.82 0.71 20.76
vRNA 1DUQ 106!A:124!B G:G H_1 [cWH][VI] 11.24 63.57; 36.29 27.28 6.82 0.49 18.4
vRNA 1DUQ 107!A:123!B C:G WC [cWW][XIX] 10.47 56.52; 52.16 4.36 -10.8 0.32 15.54
vRNA 1DUQ 108!A:122!B G:C WC [cWW][XIX] 10.6 56.2; 54.89 1.31 -8.44 0.04 10.46
vRNA 1DUQ 109!A:120!B C:G WC [cWW][XIX] 10.55 55.45; 54.48 0.97 -9.9 0.05 10.31
vRNA 1DUQ 110!A:119!B A:U WC [cWW][XX] 10.39 54.56; 56.49 1.92 -5.71 0.15 10.85
vRNA 1DUQ 111!A:118!B G:C WC [cWW][XIX] 10.64 53.49; 53.39 0.09 -9.94 0.07 11.21
vRNA 1DUQ 112!A:117!B G:C WC [cWW][XIX] 10.59 54.77; 51.65 3.12 -7.67 0.21 21.8
vRNA 1DUQ 202!C:229!D C:G WC [cWW][XIX] 9.87 65.59; 52.8 12.78 -13.89 0.11 18.96
vRNA 1DUQ 203!C:228!D U:A WC [cWW][XX] 10.03 61.53; 57.23 4.31 -9.92 0.02 12.37
vRNA 1DUQ 204!C:227!D G:C WC [cWW][XIX] 10.61 56.03; 53.59 2.44 -6.27 0.26 12.14
vRNA 1DUQ 206!C:224!D G:G H_1 [cWH][VI] 11.28 63.73; 31.42 32.31 -7.31 0.03 12.46
vRNA 1DUQ 207!C:223!D C:G WC [cWW][XIX] 10.46 57.71; 52.41 5.3 -14.15 0.32 19.3
vRNA 1DUQ 208!C:222!D G:C WC [cWW][XIX] 10.34 58.55; 55.42 3.13 -6.16 0.04 13.03
vRNA 1DUQ 209!C:220!D C:G WC [cWW][XIX] 10.4 57.41; 54.02 3.39 -6.46 0.07 11.09
vRNA 1DUQ 210!C:219!D A:U WC [cWW][XX] 10.44 58.07; 54.66 3.41 -13.79 0.2 14.01
vRNA 1DUQ 211!C:218!D G:C WC [cWW][XIX] 10.49 55.95; 58.34 2.39 -14.47 0.04 19.79
vRNA 1DUQ 212!C:217!D G:C WC [cWW][XIX] 10.41 55.01; 52.49 2.53 -9.01 0.34 18.96
vRNA 1DUQ 225!D:408!G U:G pfS*_1 [cWS][-] 8.9 48.39; 120.16 71.77 -38.74 1.9 36.12
vRNA 1DUQ 301!E:330!F G:C WC [cWW][XIX] 10.46 54.51; 55.94 1.43 -10.0 0.21 10.43
vRNA 1DUQ 302!E:329!F C:G WC [cWW][XIX] 10.58 52.89; 53.68 0.79 -11.85 0.06 13.48
vRNA 1DUQ 303!E:328!F U:A WC [cWW][XX] 10.42 54.51; 52.78 1.73 -9.4 0.08 6.76
vRNA 1DUQ 304!E:327!F G:C WC [cWW][XIX] 10.58 57.27; 53.99 3.28 -12.82 0.1 23.14
vRNA 1DUQ 305!E:326!F G:A WC [cWW][VIII] 12.7 46.24; 49.04 2.81 1.99 0.79 22.35
vRNA 1DUQ 306!E:324!F G:G H_1 [cWH][VI] 11.26 63.26; 36.14 27.13 7.21 0.42 17.66
vRNA 1DUQ 307!E:323!F C:G WC [cWW][XIX] 10.48 56.44; 51.88 4.56 -11.09 0.29 14.79
vRNA 1DUQ 308!E:322!F G:C WC [cWW][XIX] 10.56 56.73; 55.27 1.46 -7.73 0.04 10.94
vRNA 1DUQ 309!E:320!F C:G WC [cWW][XIX] 10.55 55.62; 54.59 1.02 -9.95 0.07 11.87
vRNA 1DUQ 310!E:319!F A:U WC [cWW][XX] 10.38 54.65; 56.29 1.64 -6.53 0.13 11.47
vRNA 1DUQ 311!E:318!F G:C WC [cWW][XIX] 10.68 53.63; 52.65 0.98 -9.73 0.07 11.47
vRNA 1DUQ 312!E:317!F G:C WC [cWW][XIX] 10.58 55.03; 51.86 3.17 -7.62 0.27 23.18
vRNA 1DUQ 402!G:429!H C:G WC [cWW][XIX] 9.83 62.3; 58.4 3.9 -9.54 0.19 16.8
vRNA 1DUQ 403!G:428!H U:A WC [cWW][XX] 10.18 59.15; 55.02 4.13 -14.08 0.09 15.9
vRNA 1DUQ 404!G:427!H G:C WC [cWW][XIX] 10.46 56.65; 56.02 0.63 -8.33 0.05 12.47
vRNA 1DUQ 406!G:424!H G:G H_1 [cWH][VI] 11.23 63.14; 30.14 32.99 -7.7 0.2 11.96
vRNA 1DUQ 407!G:423!H C:G WC [cWW][XIX] 10.42 55.89; 54.31 1.58 -15.04 0.56 21.37
vRNA 1DUQ 408!G:422!H G:C WC [cWW][XIX] 10.4 56.86; 57.43 0.57 -5.63 0.02 12.95
vRNA 1DUQ 409!G:420!H C:G WC [cWW][XIX] 10.43 56.22; 54.51 1.71 -5.62 0.2 10.27
vRNA 1DUQ 410!G:419!H A:U WC [cWW][XX] 10.48 58.49; 53.09 5.4 -13.9 0.15 11.92
vRNA 1DUQ 411!G:418!H G:C WC [cWW][XIX] 10.41 56.12; 55.51 0.61 -12.89 0.06 16.75
vRNA 1DUQ 412!G:417!H G:C WC [cWW][XIX] 10.44 55.23; 55.36 0.13 -10.19 0.26 16.96