Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1E7K
BPC Identified: 17
Ambiguities: 0
| snoRNA |
1E7K |
26!C:47!C |
G:C |
WC [cWW][XIX] |
10.23 |
50.12; 59.74 |
9.62 |
4.66 |
1.23 |
24.21 |
| snoRNA |
1E7K |
27!C:46!C |
C:G |
WC [cWW][XIX] |
10.58 |
55.17; 51.76 |
3.41 |
-5.13 |
0.02 |
8.64 |
| snoRNA |
1E7K |
28!C:45!C |
C:G |
WC [cWW][XIX] |
10.79 |
52.18; 52.37 |
0.19 |
-0.51 |
0.02 |
0.98 |
| snoRNA |
1E7K |
29!C:44!C |
A:A |
fS(sb:O2*-N1)_1 [---][-] |
8.75 |
103.31; 51.46 |
51.85 |
133.1 |
1.36 |
49.0 |
| snoRNA |
1E7K |
32!C:44!C |
G:A |
S [tSH][XI] |
9.59 |
96.75; 8.54 |
88.21 |
-2.36 |
0.85 |
35.57 |
| snoRNA |
1E7K |
33!C:43!C |
A:G |
S [tSH][XI] |
9.01 |
19.29; 99.42 |
80.13 |
-55.31 |
0.77 |
24.15 |
| snoRNA |
1E7K |
34!C:42!C |
G:C |
WC [cWW][XIX] |
10.75 |
54.65; 57.46 |
2.8 |
-0.16 |
1.68 |
22.98 |
| snoRNA |
1E7K |
35!C:41!C |
G:C |
WC [cWW][XIX] |
10.94 |
58.14; 42.05 |
16.09 |
-2.04 |
0.48 |
15.47 |
| snoRNA |
1E7K |
26!D:47!D |
G:C |
WC [cWW][XIX] |
10.53 |
48.91; 58.98 |
10.07 |
5.32 |
0.28 |
6.94 |
| snoRNA |
1E7K |
27!D:46!D |
C:G |
WC [cWW][XIX] |
10.58 |
53.58; 58.47 |
4.88 |
-2.88 |
0.88 |
2.67 |
| snoRNA |
1E7K |
28!D:45!D |
C:G |
WC [cWW][XIX] |
10.75 |
56.55; 51.99 |
4.56 |
8.41 |
0.25 |
13.3 |
| snoRNA |
1E7K |
29!D:44!D |
A:A |
fS(sb:O2*-N1)_1 [---][-] |
8.63 |
102.83; 51.01 |
51.82 |
135.49 |
0.86 |
47.68 |
| snoRNA |
1E7K |
32!D:44!D |
G:A |
S [tSH][XI] |
9.04 |
100.59; 8.17 |
92.42 |
-17.45 |
1.09 |
33.36 |
| snoRNA |
1E7K |
33!D:43!D |
A:G |
S [tSH][XI] |
8.54 |
15.92; 112.18 |
96.26 |
-53.79 |
0.35 |
28.09 |
| snoRNA |
1E7K |
33!D:42!D |
A:C |
Wb_mo [cWW][-] |
11.44 |
16.49; 50.96 |
34.47 |
46.06 |
1.26 |
8.6 |
| snoRNA |
1E7K |
34!D:42!D |
G:C |
WC [cWW][XIX] |
10.26 |
58.71; 59.75 |
1.03 |
7.01 |
0.61 |
13.57 |
| snoRNA |
1E7K |
35!D:41!D |
G:C |
WC [cWW][XIX] |
10.79 |
59.38; 50.74 |
8.63 |
-12.91 |
0.01 |
20.15 |