Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1E8O
BPC Identified: 22
Ambiguities: 0
| SRP_RNA |
1E8O |
99!E:148!E |
G:C |
WC [cWW][XIX] |
10.78 |
55.16; 50.31 |
4.85 |
-8.16 |
0.2 |
16.38 |
| SRP_RNA |
1E8O |
100!E:147!E |
G:U |
Wb [cWW][XXVIII] |
10.72 |
40.57; 63.12 |
22.55 |
-13.0 |
0.26 |
13.09 |
| SRP_RNA |
1E8O |
101!E:146!E |
G:C |
WC [cWW][XIX] |
10.89 |
47.8; 54.84 |
7.04 |
-7.02 |
0.08 |
8.29 |
| SRP_RNA |
1E8O |
102!E:145!E |
C:G |
WC [cWW][XIX] |
10.74 |
58.33; 57.76 |
0.57 |
-1.1 |
0.18 |
6.09 |
| SRP_RNA |
1E8O |
103!E:144!E |
C:G |
WC [cWW][XIX] |
10.87 |
51.37; 52.2 |
0.83 |
-8.25 |
0.25 |
6.61 |
| SRP_RNA |
1E8O |
104!E:123!E |
G:U |
Wb [cWW][XXVIII] |
10.23 |
46.92; 73.49 |
26.57 |
9.18 |
0.68 |
16.74 |
| SRP_RNA |
1E8O |
105!E:122!E |
G:C |
WC [cWW][XIX] |
10.51 |
53.5; 61.32 |
7.82 |
2.13 |
0.07 |
2.99 |
| SRP_RNA |
1E8O |
106!E:121!E |
G:C |
WC [cWW][XIX] |
10.61 |
54.85; 56.96 |
2.11 |
3.44 |
0.53 |
19.29 |
| SRP_RNA |
1E8O |
107!E:120!E |
C:G |
WC [cWW][XIX] |
10.58 |
57.31; 53.04 |
4.27 |
2.63 |
0.39 |
1.88 |
| SRP_RNA |
1E8O |
108!E:119!E |
G:C |
WC [cWW][XIX] |
10.68 |
54.69; 55.89 |
1.2 |
-1.78 |
0.03 |
4.29 |
| SRP_RNA |
1E8O |
109!E:118!E |
C:G |
WC [cWW][XIX] |
10.75 |
56.09; 54.71 |
1.39 |
2.34 |
0.17 |
3.67 |
| SRP_RNA |
1E8O |
110!E:117!E |
G:C |
WC [cWW][XIX] |
10.71 |
54.73; 54.69 |
0.04 |
10.71 |
0.06 |
13.4 |
| SRP_RNA |
1E8O |
111!E:116!E |
G:G |
S_1 [tSH][-] |
11.51 |
70.61; 15.65 |
54.97 |
114.63 |
1.79 |
31.13 |
| SRP_RNA |
1E8O |
112!E:114!E |
U:G |
S(sb:O2*-N7)_1 [---][-] |
6.66 |
76.6; 41.64 |
34.96 |
-163.21 |
0.11 |
39.54 |
| SRP_RNA |
1E8O |
113!E:137!E |
G:C |
WC [cWW][XIX] |
10.82 |
56.27; 51.99 |
4.28 |
2.31 |
0.62 |
15.71 |
| SRP_RNA |
1E8O |
114!E:134!E |
G:C |
WC [cWW][XIX] |
10.56 |
52.51; 59.83 |
7.32 |
10.59 |
0.08 |
8.41 |
| SRP_RNA |
1E8O |
115!E:133!E |
C:G |
WC [cWW][XIX] |
10.58 |
60.27; 50.96 |
9.31 |
13.1 |
0.39 |
20.09 |
| SRP_RNA |
1E8O |
116!E:132!E |
G:A |
rS(sb:O2*-N1)_1 [---][-] |
8.87 |
92.89; 49.03 |
43.85 |
104.93 |
1.11 |
86.75 |
| SRP_RNA |
1E8O |
128!E:143!E |
U:A |
WC [cWW][XX] |
10.71 |
57.74; 58.76 |
1.02 |
5.2 |
0.17 |
7.04 |
| SRP_RNA |
1E8O |
129!E:142!E |
C:G |
WC [cWW][XIX] |
10.74 |
56.04; 56.27 |
0.23 |
1.36 |
0.34 |
15.28 |
| SRP_RNA |
1E8O |
130!E:141!E |
C:G |
WC [cWW][XIX] |
10.6 |
54.6; 59.1 |
4.5 |
3.19 |
0.05 |
3.7 |
| SRP_RNA |
1E8O |
131!E:140!E |
C:G |
WC [cWW][XIX] |
10.6 |
59.12; 53.34 |
5.79 |
-2.66 |
0.19 |
9.11 |