Identified Basepairs and Their Conformations and Conformational Parameters
RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1ET4
BPC Identified: 93
Ambiguities: 0
RNA_aptamer |
1ET4 |
207!A:223!A |
G:U |
S*_1 [---][-] |
11.8 |
82.81; 17.78 |
65.04 |
-97.58 |
1.6 |
52.32 |
RNA_aptamer |
1ET4 |
207!A:222!A |
G:C |
WC [cWW][XIX] |
10.65 |
54.4; 53.02 |
1.38 |
-10.9 |
0.07 |
15.65 |
RNA_aptamer |
1ET4 |
208!A:225!A |
G:A |
rS [tSS][-] |
8.27 |
89.18; 56.29 |
32.89 |
151.46 |
1.12 |
41.63 |
RNA_aptamer |
1ET4 |
208!A:221!A |
G:C |
WC [cWW][XIX] |
10.55 |
57.43; 56.3 |
1.13 |
-17.44 |
0.47 |
27.47 |
RNA_aptamer |
1ET4 |
209!A:220!A |
U:A |
WC [cWW][XX] |
10.91 |
54.26; 51.02 |
3.24 |
-7.41 |
0.48 |
22.05 |
RNA_aptamer |
1ET4 |
210!A:228!A |
G:G |
H_1 [cWH][VI] |
11.66 |
61.04; 27.1 |
33.94 |
11.42 |
0.45 |
15.24 |
RNA_aptamer |
1ET4 |
211!A:230!A |
C:G |
WC [cWW][XIX] |
10.74 |
53.29; 48.49 |
4.8 |
-29.11 |
0.61 |
20.82 |
RNA_aptamer |
1ET4 |
212!A:233!A |
G:C |
WC [cWW][XIX] |
10.48 |
54.63; 55.87 |
1.24 |
-14.91 |
0.03 |
15.66 |
RNA_aptamer |
1ET4 |
213!A:232!A |
C:G |
WC [cWW][XIX] |
10.76 |
54.34; 53.05 |
1.29 |
-11.49 |
0.3 |
8.7 |
RNA_aptamer |
1ET4 |
214!A:231!A |
A:A |
rWb* [tWW][I] |
13.67 |
34.13; 23.04 |
11.09 |
124.94 |
0.27 |
23.84 |
RNA_aptamer |
1ET4 |
215!A:229!A |
U:C |
WC_mo [cWW][XVIII] |
12.2 |
34.31; 32.88 |
1.42 |
2.72 |
0.64 |
8.83 |
RNA_aptamer |
1ET4 |
215!A:227!A |
U:U |
rH_1 [tWH][-] |
10.95 |
12.39; 28.93 |
16.54 |
142.64 |
0.78 |
39.49 |
RNA_aptamer |
1ET4 |
217!A:229!A |
A:C |
sWb [---][-] |
10.71 |
28.46; 85.36 |
56.9 |
3.05 |
0.6 |
10.06 |
RNA_aptamer |
1ET4 |
218!A:228!A |
C:G |
WC [cWW][XIX] |
10.57 |
53.68; 55.62 |
1.94 |
-7.22 |
1.03 |
26.33 |
RNA_aptamer |
1ET4 |
219!A:226!A |
C:G |
WC [cWW][XIX] |
10.77 |
52.72; 55.57 |
2.85 |
2.31 |
0.5 |
15.53 |
RNA_aptamer |
1ET4 |
221!A:225!A |
C:A |
rpS(bs:O2-O2*) [cSS][-] |
5.7 |
107.32; 148.37 |
41.05 |
-31.6 |
1.86 |
17.71 |
RNA_aptamer |
1ET4 |
224!A:326!B |
C:G |
pfS*_2 [---][-] |
6.56 |
83.93; 122.48 |
38.55 |
6.86 |
0.83 |
15.74 |
RNA_aptamer |
1ET4 |
226!A:324!B |
G:C |
pfS*_2 [---][-] |
6.59 |
120.44; 83.52 |
36.92 |
15.03 |
0.15 |
7.13 |
RNA_aptamer |
1ET4 |
227!A:229!A |
U:C |
H_2 [---][-] |
8.71 |
104.62; 28.48 |
76.14 |
10.41 |
0.9 |
48.28 |
RNA_aptamer |
1ET4 |
234!A:335!B |
A:A |
rpS(sb:O2*-N3) [cSS][-] |
5.5 |
99.95; 147.73 |
47.78 |
-58.25 |
0.18 |
23.85 |
RNA_aptamer |
1ET4 |
235!A:334!B |
A:A |
rpS(sb:O2*-N3) [cSS][-] |
5.48 |
146.42; 93.7 |
52.72 |
-62.55 |
0.1 |
21.1 |
RNA_aptamer |
1ET4 |
307!B:322!B |
G:C |
WC [cWW][XIX] |
10.72 |
50.79; 52.18 |
1.39 |
-12.44 |
0.09 |
16.34 |
RNA_aptamer |
1ET4 |
308!B:325!B |
G:A |
rS [tSS][-] |
8.14 |
87.63; 56.89 |
30.74 |
147.47 |
1.66 |
47.92 |
RNA_aptamer |
1ET4 |
308!B:321!B |
G:C |
WC [cWW][XIX] |
10.38 |
54.62; 55.29 |
0.67 |
-23.81 |
0.32 |
32.44 |
RNA_aptamer |
1ET4 |
309!B:320!B |
U:A |
WC [cWW][XX] |
11.05 |
51.7; 46.3 |
5.4 |
-16.3 |
0.42 |
22.57 |
RNA_aptamer |
1ET4 |
310!B:328!B |
G:G |
H_1 [cWH][VI] |
11.54 |
62.58; 27.07 |
35.5 |
12.15 |
0.63 |
18.69 |
RNA_aptamer |
1ET4 |
311!B:330!B |
C:G |
WC [cWW][XIX] |
10.81 |
50.23; 50.37 |
0.14 |
-25.52 |
0.06 |
22.22 |
RNA_aptamer |
1ET4 |
312!B:333!B |
G:C |
WC [cWW][XIX] |
10.65 |
53.76; 57.58 |
3.82 |
-13.75 |
0.02 |
12.44 |
RNA_aptamer |
1ET4 |
313!B:332!B |
C:G |
WC [cWW][XIX] |
10.69 |
55.19; 53.82 |
1.37 |
-4.62 |
0.11 |
7.62 |
RNA_aptamer |
1ET4 |
314!B:331!B |
A:A |
rWb* [tWW][I] |
13.74 |
35.17; 24.02 |
11.16 |
130.52 |
0.35 |
22.85 |
RNA_aptamer |
1ET4 |
315!B:329!B |
U:C |
WC_mo [cWW][XVIII] |
12.38 |
33.2; 31.08 |
2.12 |
0.99 |
0.39 |
9.68 |
RNA_aptamer |
1ET4 |
315!B:327!B |
U:U |
rH_1 [tWH][-] |
11.06 |
12.15; 27.22 |
15.07 |
141.26 |
0.64 |
31.87 |
RNA_aptamer |
1ET4 |
317!B:329!B |
A:C |
sWb [---][-] |
11.04 |
26.83; 81.47 |
54.65 |
8.92 |
0.67 |
12.28 |
RNA_aptamer |
1ET4 |
318!B:328!B |
C:G |
WC [cWW][XIX] |
10.56 |
53.87; 55.53 |
1.66 |
-12.95 |
0.76 |
21.72 |
RNA_aptamer |
1ET4 |
319!B:326!B |
C:G |
WC [cWW][XIX] |
10.71 |
50.12; 54.18 |
4.05 |
-0.61 |
0.41 |
16.95 |
RNA_aptamer |
1ET4 |
321!B:325!B |
C:A |
rpS(bs:O2-O2*) [cSS][-] |
5.8 |
106.18; 145.58 |
39.41 |
-40.18 |
2.07 |
16.64 |
RNA_aptamer |
1ET4 |
327!B:329!B |
U:C |
H_2 [---][-] |
8.67 |
103.73; 30.17 |
73.55 |
7.97 |
1.1 |
41.54 |
RNA_aptamer |
1ET4 |
407!C:422!C |
G:C |
WC [cWW][XIX] |
10.73 |
54.6; 53.99 |
0.61 |
-9.56 |
0.14 |
19.55 |
RNA_aptamer |
1ET4 |
408!C:425!C |
G:A |
rS [tSS][-] |
8.22 |
87.96; 56.2 |
31.76 |
146.77 |
1.21 |
44.22 |
RNA_aptamer |
1ET4 |
408!C:421!C |
G:C |
WC [cWW][XIX] |
10.38 |
56.41; 55.96 |
0.44 |
-18.73 |
0.68 |
31.71 |
RNA_aptamer |
1ET4 |
409!C:420!C |
U:A |
WC [cWW][XX] |
10.77 |
56.26; 50.7 |
5.56 |
-8.03 |
0.48 |
19.09 |
RNA_aptamer |
1ET4 |
410!C:428!C |
G:G |
H_1 [cWH][VI] |
11.58 |
62.34; 26.47 |
35.87 |
16.58 |
0.54 |
11.72 |
RNA_aptamer |
1ET4 |
410!C:418!C |
G:C |
rH* [---][-] |
14.24 |
17.74; 4.32 |
13.42 |
49.18 |
0.27 |
24.13 |
RNA_aptamer |
1ET4 |
411!C:430!C |
C:G |
WC [cWW][XIX] |
10.87 |
53.36; 49.21 |
4.15 |
-28.87 |
0.03 |
27.59 |
RNA_aptamer |
1ET4 |
412!C:433!C |
G:C |
WC [cWW][XIX] |
10.35 |
53.16; 59.95 |
6.79 |
-16.47 |
0.06 |
17.7 |
RNA_aptamer |
1ET4 |
413!C:432!C |
C:G |
WC [cWW][XIX] |
10.72 |
55.51; 52.38 |
3.13 |
-12.54 |
0.24 |
15.53 |
RNA_aptamer |
1ET4 |
414!C:431!C |
A:A |
rWb* [tWW][I] |
13.6 |
34.39; 23.76 |
10.62 |
128.66 |
0.31 |
22.47 |
RNA_aptamer |
1ET4 |
415!C:429!C |
U:C |
WC_mo [cWW][XVIII] |
12.17 |
34.66; 34.27 |
0.39 |
-0.9 |
0.43 |
15.7 |
RNA_aptamer |
1ET4 |
415!C:427!C |
U:U |
rH_1 [tWH][-] |
11.04 |
11.77; 30.22 |
18.46 |
144.85 |
0.53 |
37.57 |
RNA_aptamer |
1ET4 |
417!C:429!C |
A:C |
sWb [---][-] |
10.77 |
28.55; 86.35 |
57.8 |
5.45 |
0.37 |
7.76 |
RNA_aptamer |
1ET4 |
418!C:129!E |
C:C |
rpS(ss:O2*-O2*) [---][-] |
5.82 |
165.82; 156.42 |
9.4 |
-94.14 |
0.44 |
67.83 |
RNA_aptamer |
1ET4 |
418!C:428!C |
C:G |
WC [cWW][XIX] |
10.52 |
54.07; 56.88 |
2.81 |
-8.69 |
1.07 |
26.89 |
RNA_aptamer |
1ET4 |
419!C:426!C |
C:G |
WC [cWW][XIX] |
10.71 |
51.91; 54.82 |
2.91 |
-2.21 |
0.21 |
18.26 |
RNA_aptamer |
1ET4 |
421!C:425!C |
C:A |
rpS(bs:O2-O2*) [cSS][-] |
5.61 |
107.97; 146.08 |
38.11 |
-33.05 |
2.46 |
20.52 |
RNA_aptamer |
1ET4 |
424!C:526!D |
C:G |
pfS*_2 [---][-] |
6.35 |
85.49; 120.83 |
35.33 |
5.65 |
0.04 |
7.57 |
RNA_aptamer |
1ET4 |
426!C:524!D |
G:C |
pfS*_2 [---][-] |
6.39 |
122.62; 84.92 |
37.71 |
7.31 |
0.1 |
6.84 |
RNA_aptamer |
1ET4 |
427!C:429!C |
U:C |
H_2 [---][-] |
8.77 |
105.04; 28.17 |
76.87 |
13.3 |
1.44 |
53.21 |
RNA_aptamer |
1ET4 |
429!C:118!E |
C:C |
rpS(ss:O2*-O2*) [---][-] |
5.61 |
157.78; 166.54 |
8.76 |
-106.07 |
1.04 |
70.11 |
RNA_aptamer |
1ET4 |
434!C:535!D |
A:A |
rpS(sb:O2*-N3) [cSS][-] |
5.4 |
95.19; 150.82 |
55.64 |
-66.22 |
0.46 |
21.05 |
RNA_aptamer |
1ET4 |
435!C:534!D |
A:A |
rpS(sb:O2*-N3) [cSS][-] |
5.54 |
147.78; 98.95 |
48.83 |
-60.6 |
0.59 |
20.46 |
RNA_aptamer |
1ET4 |
507!D:522!D |
G:C |
WC [cWW][XIX] |
10.63 |
53.98; 56.13 |
2.15 |
-8.12 |
0.2 |
20.59 |
RNA_aptamer |
1ET4 |
508!D:525!D |
G:A |
rS [tSS][-] |
7.98 |
89.3; 58.52 |
30.78 |
146.25 |
1.32 |
50.67 |
RNA_aptamer |
1ET4 |
508!D:521!D |
G:C |
WC [cWW][XIX] |
10.62 |
56.2; 55.2 |
1.0 |
-18.72 |
0.45 |
30.86 |
RNA_aptamer |
1ET4 |
509!D:520!D |
U:A |
WC [cWW][XX] |
10.88 |
53.48; 50.32 |
3.16 |
-8.56 |
0.51 |
18.05 |
RNA_aptamer |
1ET4 |
510!D:528!D |
G:G |
H_1 [cWH][VI] |
11.56 |
61.88; 27.08 |
34.8 |
15.03 |
0.49 |
15.42 |
RNA_aptamer |
1ET4 |
510!D:518!D |
G:C |
rH* [---][-] |
14.27 |
17.91; 3.89 |
14.02 |
30.68 |
0.19 |
22.73 |
RNA_aptamer |
1ET4 |
511!D:530!D |
C:G |
WC [cWW][XIX] |
10.91 |
52.36; 51.34 |
1.02 |
-24.68 |
0.42 |
19.44 |
RNA_aptamer |
1ET4 |
512!D:533!D |
G:C |
WC [cWW][XIX] |
10.58 |
49.36; 55.88 |
6.52 |
-13.17 |
0.05 |
15.34 |
RNA_aptamer |
1ET4 |
513!D:532!D |
C:G |
WC [cWW][XIX] |
10.61 |
55.64; 52.24 |
3.4 |
-10.72 |
0.4 |
15.27 |
RNA_aptamer |
1ET4 |
514!D:531!D |
A:A |
rWb* [tWW][I] |
13.67 |
33.78; 26.55 |
7.22 |
124.07 |
0.32 |
22.79 |
RNA_aptamer |
1ET4 |
515!D:529!D |
U:C |
WC_mo [cWW][XVIII] |
12.18 |
34.1; 32.41 |
1.69 |
0.5 |
0.6 |
14.89 |
RNA_aptamer |
1ET4 |
515!D:527!D |
U:U |
rH_1 [tWH][-] |
11.0 |
11.61; 29.88 |
18.27 |
149.53 |
0.53 |
38.34 |
RNA_aptamer |
1ET4 |
517!D:529!D |
A:C |
sWb [---][-] |
10.76 |
27.82; 84.39 |
56.56 |
3.59 |
0.25 |
8.46 |
RNA_aptamer |
1ET4 |
518!D:528!D |
C:G |
WC [cWW][XIX] |
10.4 |
55.0; 56.83 |
1.83 |
-9.31 |
0.99 |
25.94 |
RNA_aptamer |
1ET4 |
519!D:526!D |
C:G |
WC [cWW][XIX] |
10.74 |
52.91; 52.79 |
0.12 |
-2.02 |
0.41 |
17.14 |
RNA_aptamer |
1ET4 |
521!D:525!D |
C:A |
rpS(bs:O2-O2*) [cSS][-] |
5.95 |
103.05; 148.03 |
44.98 |
-45.53 |
2.4 |
23.42 |
RNA_aptamer |
1ET4 |
527!D:529!D |
U:C |
H_2 [---][-] |
8.77 |
104.93; 29.02 |
75.91 |
7.96 |
1.24 |
53.22 |
RNA_aptamer |
1ET4 |
107!E:122!E |
G:C |
WC [cWW][XIX] |
10.76 |
54.27; 53.94 |
0.33 |
-9.92 |
0.08 |
21.28 |
RNA_aptamer |
1ET4 |
108!E:125!E |
G:A |
rS [tSS][-] |
8.3 |
87.48; 56.06 |
31.42 |
143.96 |
1.41 |
51.82 |
RNA_aptamer |
1ET4 |
108!E:121!E |
G:C |
WC [cWW][XIX] |
10.48 |
54.83; 57.12 |
2.29 |
-17.32 |
0.52 |
32.18 |
RNA_aptamer |
1ET4 |
109!E:120!E |
U:A |
WC [cWW][XX] |
10.86 |
54.74; 51.88 |
2.87 |
-8.07 |
0.26 |
18.81 |
RNA_aptamer |
1ET4 |
110!E:128!E |
G:G |
H_1 [cWH][VI] |
11.51 |
61.99; 27.62 |
34.37 |
12.27 |
0.66 |
14.38 |
RNA_aptamer |
1ET4 |
111!E:130!E |
C:G |
WC [cWW][XIX] |
10.79 |
51.78; 51.38 |
0.4 |
-24.18 |
0.13 |
20.45 |
RNA_aptamer |
1ET4 |
112!E:133!E |
G:C |
WC [cWW][XIX] |
10.22 |
51.58; 57.73 |
6.15 |
-10.26 |
0.24 |
12.78 |
RNA_aptamer |
1ET4 |
113!E:132!E |
C:G |
WC [cWW][XIX] |
10.88 |
54.64; 52.8 |
1.85 |
-11.58 |
0.13 |
14.51 |
RNA_aptamer |
1ET4 |
114!E:131!E |
A:A |
rWb* [tWW][I] |
13.59 |
34.31; 27.73 |
6.58 |
121.28 |
0.27 |
28.35 |
RNA_aptamer |
1ET4 |
115!E:129!E |
U:C |
WC_mo [cWW][XVIII] |
12.18 |
35.38; 32.23 |
3.15 |
2.65 |
0.47 |
7.7 |
RNA_aptamer |
1ET4 |
115!E:127!E |
U:U |
rH_1 [tWH][-] |
11.0 |
11.54; 29.23 |
17.69 |
133.71 |
0.82 |
36.77 |
RNA_aptamer |
1ET4 |
117!E:129!E |
A:C |
sWb [---][-] |
10.74 |
26.4; 83.99 |
57.59 |
3.44 |
0.52 |
13.75 |
RNA_aptamer |
1ET4 |
118!E:128!E |
C:G |
WC [cWW][XIX] |
10.61 |
54.32; 56.47 |
2.15 |
-8.54 |
0.74 |
21.8 |
RNA_aptamer |
1ET4 |
119!E:126!E |
C:G |
WC [cWW][XIX] |
10.7 |
51.79; 54.22 |
2.43 |
-3.5 |
0.29 |
14.72 |
RNA_aptamer |
1ET4 |
121!E:125!E |
C:A |
rpS(bs:O2-O2*) [cSS][-] |
5.79 |
109.13; 142.76 |
33.63 |
-37.6 |
2.51 |
25.53 |
RNA_aptamer |
1ET4 |
127!E:129!E |
U:C |
H_2 [---][-] |
8.7 |
104.39; 29.51 |
74.88 |
7.23 |
1.0 |
44.47 |