Identified Basepairs and Their Conformations and Conformational Parameters
RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1EUQ
BPC Identified: 31
Ambiguities: 0
tRNA |
1EUQ |
902!B:971!B |
G:C |
WC [cWW][XIX] |
10.37 |
44.15; 55.17 |
11.02 |
-7.77 |
0.93 |
26.84 |
tRNA |
1EUQ |
903!B:970!B |
G:C |
WC [cWW][XIX] |
10.17 |
55.89; 55.23 |
0.65 |
-8.68 |
0.76 |
25.96 |
tRNA |
1EUQ |
904!B:969!B |
G:C |
WC [cWW][XIX] |
10.56 |
58.43; 45.66 |
12.77 |
-7.53 |
0.04 |
15.35 |
tRNA |
1EUQ |
905!B:968!B |
G:C |
WC [cWW][XIX] |
10.44 |
54.98; 57.33 |
2.35 |
-5.87 |
0.21 |
33.23 |
tRNA |
1EUQ |
906!B:967!B |
U:A |
WC [cWW][XX] |
9.79 |
62.15; 59.17 |
2.98 |
-13.61 |
0.16 |
14.37 |
tRNA |
1EUQ |
907!B:966!B |
A:U |
WC [cWW][XX] |
10.19 |
58.04; 58.4 |
0.36 |
1.36 |
0.67 |
11.58 |
tRNA |
1EUQ |
908!B:921!B |
U:A |
fS(sb:O2*-N1) [tSW][-] |
8.23 |
96.2; 52.3 |
43.9 |
165.04 |
1.99 |
55.97 |
tRNA |
1EUQ |
908!B:914!B |
U:A |
rH_1 [tWH][XXIV] |
9.79 |
32.4; 15.78 |
16.62 |
176.23 |
0.46 |
24.81 |
tRNA |
1EUQ |
910!B:925!B |
G:C |
WC [cWW][XIX] |
10.57 |
51.03; 55.17 |
4.14 |
-1.12 |
0.07 |
6.55 |
tRNA |
1EUQ |
911!B:924!B |
C:G |
WC [cWW][XIX] |
10.23 |
58.7; 52.13 |
6.57 |
-4.38 |
0.09 |
7.5 |
tRNA |
1EUQ |
912!B:923!B |
C:G |
WC [cWW][XIX] |
11.26 |
51.4; 46.99 |
4.41 |
-4.09 |
0.06 |
5.35 |
tRNA |
1EUQ |
913!B:922!B |
A:A |
S [tSH][-] |
9.46 |
97.0; 14.78 |
82.21 |
-13.57 |
0.6 |
15.19 |
tRNA |
1EUQ |
915!B:948!B |
G:G |
rH_3 [---][-] |
10.81 |
39.39; 44.62 |
5.23 |
176.29 |
1.94 |
45.17 |
tRNA |
1EUQ |
918!B:955!B |
G:U |
fS_1 [tSW][-] |
8.42 |
36.94; 109.49 |
72.56 |
-109.97 |
1.24 |
51.75 |
tRNA |
1EUQ |
919!B:956!B |
G:C |
WC [cWW][XIX] |
10.88 |
53.01; 53.32 |
0.31 |
-25.77 |
0.61 |
16.37 |
tRNA |
1EUQ |
919!B:920!B |
G:U |
pS* [cHS][-] |
5.68 |
138.17; 62.73 |
75.43 |
14.57 |
0.73 |
22.37 |
tRNA |
1EUQ |
926!B:944!B |
A:C |
Wb_mo [cWW][-] |
12.08 |
37.03; 48.34 |
11.31 |
10.21 |
1.2 |
6.69 |
tRNA |
1EUQ |
927!B:943!B |
C:G |
WC [cWW][XIX] |
10.18 |
62.26; 56.73 |
5.53 |
-9.95 |
0.5 |
32.05 |
tRNA |
1EUQ |
928!B:942!B |
C:G |
WC [cWW][XIX] |
10.57 |
53.07; 54.25 |
1.17 |
3.19 |
0.11 |
10.57 |
tRNA |
1EUQ |
929!B:941!B |
G:C |
WC [cWW][XIX] |
10.6 |
44.3; 54.65 |
10.35 |
1.39 |
0.44 |
19.09 |
tRNA |
1EUQ |
930!B:940!B |
G:C |
Wb [---][-] |
9.59 |
52.0; 83.06 |
31.07 |
-15.83 |
0.68 |
27.98 |
tRNA |
1EUQ |
931!B:939!B |
A:U |
WC [cWW][XX] |
9.98 |
58.41; 59.88 |
1.47 |
2.29 |
0.31 |
12.17 |
tRNA |
1EUQ |
932!B:938!B |
U:U |
Wb_mo [cWW][XVI] |
11.04 |
59.67; 19.77 |
39.9 |
10.09 |
0.2 |
6.95 |
tRNA |
1EUQ |
933!B:937!B |
U:A |
S [tSH][-] |
8.92 |
80.54; 9.77 |
70.77 |
131.82 |
2.16 |
39.73 |
tRNA |
1EUQ |
949!B:965!B |
C:G |
WC [cWW][XIX] |
10.45 |
54.05; 53.13 |
0.92 |
-5.08 |
0.19 |
15.43 |
tRNA |
1EUQ |
950!B:964!B |
G:C |
WC [cWW][XIX] |
10.28 |
57.97; 48.96 |
9.01 |
1.95 |
1.1 |
26.31 |
tRNA |
1EUQ |
951!B:963!B |
A:U |
WC [cWW][XX] |
10.55 |
50.07; 57.53 |
7.46 |
0.6 |
0.09 |
9.55 |
tRNA |
1EUQ |
952!B:962!B |
G:C |
WC [cWW][XIX] |
10.7 |
52.11; 52.4 |
0.29 |
7.68 |
0.51 |
5.42 |
tRNA |
1EUQ |
953!B:961!B |
G:C |
WC [cWW][XIX] |
10.93 |
50.79; 58.17 |
7.38 |
18.01 |
0.62 |
18.4 |
tRNA |
1EUQ |
954!B:958!B |
U:A |
rH_1 [tWH][XXIV] |
9.15 |
48.32; 7.98 |
40.34 |
-174.26 |
0.5 |
19.29 |
tRNA |
1EUQ |
955!B:957!B |
U:G |
S(sb:O2*-N7)_1 [---][-] |
5.66 |
86.66; 36.05 |
50.61 |
-157.79 |
1.62 |
49.95 |