Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1F27
BPC Identified: 15
Ambiguities: 1
| RNA_aptamer |
1F27 |
3!A:20!A |
A:U |
WC [cWW][XX] |
10.59 |
54.39; 53.79 |
0.59 |
-10.14 |
0.27 |
13.08 |
| RNA_aptamer |
1F27 |
4!A:23!B |
C:A |
fS(sb:O2*-N1)_1 [tSS][-] |
8.33 |
89.41; 57.24 |
32.17 |
153.37 |
2.33 |
47.56 |
| RNA_aptamer |
1F27 |
4!A:19!A |
C:G |
WC [cWW][XIX] |
10.43 |
57.21; 56.52 |
0.69 |
-15.97 |
0.55 |
22.67 |
| RNA_aptamer |
1F27 |
5!A:18!A |
C:G |
WC [cWW][XIX] |
10.62 |
54.29; 55.24 |
0.95 |
-10.36 |
0.13 |
13.71 |
| RNA_aptamer |
1F27 |
6!A:17!A |
G:C |
WC [cWW][XIX] |
10.62 |
55.3; 53.9 |
1.39 |
-3.74 |
0.09 |
6.14 |
| RNA_aptamer |
1F27 |
7!A:16!A |
U:A |
WC [cWW][XX] |
9.98 |
63.7; 58.57 |
5.14 |
12.12 |
0.62 |
22.32 |
| RNA_aptamer |
1F27 |
10!A:32!B |
G:C |
WC [cWW][XIX] |
10.45 |
55.46; 58.09 |
2.63 |
-6.43 |
0.25 |
10.93 |
| RNA_aptamer |
1F27 |
11!A:31!B |
A:U |
WC [cWW][XX] |
10.36 |
51.64; 56.79 |
5.15 |
-14.74 |
0.21 |
12.06 |
| RNA_aptamer |
1F27 |
12!A:30!B |
G:C |
WC [cWW][XIX] |
10.52 |
56.5; 54.94 |
1.56 |
-12.05 |
0.06 |
13.41 |
| RNA_aptamer |
1F27 |
13!A:29!B |
G:C |
WC [cWW][XIX] |
10.64 |
54.33; 55.4 |
1.07 |
-12.16 |
0.49 |
19.45 |
| RNA_aptamer |
1F27 |
14!A:28!B |
A:U |
WC [cWW][XX] |
10.54 |
54.49; 55.41 |
0.92 |
-12.77 |
0.33 |
15.01 |
| RNA_aptamer |
1F27 |
15!A:27!B |
C:G |
WC [cWW][XIX] |
10.46 |
57.68; 56.5 |
1.17 |
-2.94 |
0.62 |
14.75 |
| RNA_aptamer |
1F27 |
17!A:26!B |
C:A |
pfS [cSW][-] |
8.86 |
130.79; 39.81 |
90.99 |
35.48 |
0.14 |
22.45 |
| RNA_aptamer |
1F27 |
18!A:24!B |
G:A |
S(bp:N2-O2P)_2 [---][-] |
8.21 |
132.44; 29.02 |
103.42 |
119.43 |
2.04 |
18.72 |
| RNA_aptamer |
1F27 |
19!A:23!B |
G:A |
rpS [cSS][-] |
5.63 |
108.97; 146.99 |
38.01 |
-35.4 |
0.02 |
27.85 |