Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1F7Y
BPC Identified: 24
Ambiguities: 0
| rRNA |
1F7Y |
1!B:57!B |
G:C |
WC [cWW][XIX] |
11.15 |
52.8; 45.86 |
6.94 |
2.2 |
0.27 |
2.0 |
| rRNA |
1F7Y |
2!B:56!B |
G:U |
Wb [cWW][XXVIII] |
10.16 |
44.39; 65.75 |
21.36 |
-12.13 |
0.17 |
15.93 |
| rRNA |
1F7Y |
3!B:55!B |
G:C |
WC [cWW][XIX] |
10.74 |
52.26; 52.11 |
0.15 |
-1.45 |
0.05 |
6.35 |
| rRNA |
1F7Y |
4!B:54!B |
C:G |
WC [cWW][XIX] |
10.74 |
52.07; 53.5 |
1.42 |
-1.54 |
0.04 |
3.94 |
| rRNA |
1F7Y |
6!B:15!B |
G:C |
WC [cWW][XIX] |
10.36 |
53.32; 53.28 |
0.04 |
-7.47 |
0.36 |
17.55 |
| rRNA |
1F7Y |
7!B:14!B |
C:G |
WC [cWW][XIX] |
10.42 |
54.64; 56.25 |
1.61 |
-4.71 |
0.68 |
21.82 |
| rRNA |
1F7Y |
8!B:13!B |
C:G |
WC [cWW][XIX] |
10.44 |
56.04; 58.96 |
2.92 |
3.68 |
0.12 |
12.31 |
| rRNA |
1F7Y |
9!B:12!B |
U:G |
fS_1 [tSW][-] |
9.43 |
101.18; 24.7 |
76.48 |
165.05 |
0.12 |
14.32 |
| rRNA |
1F7Y |
16!B:52!B |
U:A |
rH_1 [tWH][XXIV] |
9.7 |
26.63; 21.67 |
4.96 |
174.22 |
0.37 |
8.85 |
| rRNA |
1F7Y |
18!B:53!B |
G:C |
WC [cWW][XIX] |
10.73 |
52.82; 49.69 |
3.13 |
6.61 |
0.12 |
9.38 |
| rRNA |
1F7Y |
18!B:51!B |
G:G |
S_1 [tSH][-] |
10.74 |
16.16; 93.31 |
77.15 |
-12.62 |
0.56 |
17.25 |
| rRNA |
1F7Y |
19!B:50!B |
A:U |
WC [cWW][XX] |
10.64 |
53.86; 51.21 |
2.65 |
-7.33 |
0.09 |
9.98 |
| rRNA |
1F7Y |
20!B:49!B |
C:G |
WC [cWW][XIX] |
10.43 |
56.62; 53.45 |
3.17 |
-5.96 |
0.06 |
9.35 |
| rRNA |
1F7Y |
21!B:48!B |
G:C |
WC [cWW][XIX] |
10.65 |
53.64; 54.74 |
1.1 |
0.72 |
0.14 |
8.39 |
| rRNA |
1F7Y |
22!B:46!B |
G:C |
WC [cWW][XIX] |
10.72 |
47.07; 53.29 |
6.22 |
-6.88 |
0.31 |
12.95 |
| rRNA |
1F7Y |
23!B:45!B |
U:A |
WC [cWW][XX] |
10.03 |
52.21; 60.92 |
8.71 |
-5.68 |
0.05 |
9.4 |
| rRNA |
1F7Y |
24!B:44!B |
G:C |
WC [cWW][XIX] |
10.12 |
53.25; 58.32 |
5.07 |
-0.01 |
0.2 |
6.76 |
| rRNA |
1F7Y |
25!B:43!B |
G:C |
WC [cWW][XIX] |
10.69 |
48.4; 56.67 |
8.28 |
-7.87 |
0.18 |
13.86 |
| rRNA |
1F7Y |
26!B:42!B |
G:U |
Wb [cWW][XXVIII] |
10.56 |
43.27; 62.22 |
18.95 |
-15.07 |
0.69 |
19.09 |
| rRNA |
1F7Y |
27!B:41!B |
A:G |
WC [cWW][VIII] |
12.43 |
47.17; 48.12 |
0.95 |
2.55 |
0.36 |
10.02 |
| rRNA |
1F7Y |
30!B:39!B |
G:U |
Wb [cWW][XXVIII] |
10.45 |
35.99; 71.39 |
35.4 |
-4.0 |
0.05 |
14.16 |
| rRNA |
1F7Y |
31!B:38!B |
G:C |
WC [cWW][XIX] |
10.65 |
53.7; 47.4 |
6.3 |
-3.2 |
0.02 |
5.12 |
| rRNA |
1F7Y |
32!B:37!B |
C:G |
WC [cWW][XIX] |
10.19 |
59.03; 50.01 |
9.02 |
3.95 |
0.27 |
12.47 |
| rRNA |
1F7Y |
33!B:36!B |
U:G |
fS_1 [tSW][-] |
9.93 |
95.21; 31.0 |
64.21 |
160.62 |
0.23 |
19.34 |