Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1FIR BPC Identified: 35 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
tRNA 1FIR 1!A:72!A G:C WC [cWW][XIX] 10.25 55.74; 58.73 2.99 -4.32 0.1 3.19
tRNA 1FIR 2!A:71!A C:G WC [cWW][XIX] 10.51 56.91; 53.96 2.94 -1.12 0.18 9.96
tRNA 1FIR 3!A:70!A C:G WC [cWW][XIX] 10.34 57.99; 55.31 2.68 -5.45 0.0 9.36
tRNA 1FIR 4!A:69!A C:G WC [cWW][XIX] 10.61 54.79; 53.91 0.88 -0.88 0.41 12.03
tRNA 1FIR 5!A:68!A G:C WC [cWW][XIX] 10.69 53.98; 54.64 0.65 -0.03 0.05 9.49
tRNA 1FIR 6!A:67!A G:U Wb [cWW][XXVIII] 10.38 45.47; 69.48 24.01 0.69 0.01 2.9
tRNA 1FIR 7!A:66!A A:U WC [cWW][XX] 10.43 57.33; 57.65 0.33 13.69 0.11 14.52
tRNA 1FIR 8!A:21!A U:A fS(sb:O2*-N1) [tSW][-] 8.32 97.08; 60.1 36.98 173.48 1.28 34.21
tRNA 1FIR 8!A:14!A U:A rH_1 [tWH][XXIV] 9.59 37.05; 13.37 23.68 153.82 0.68 24.07
tRNA 1FIR 9!A:23!A A:A rS* [tHH][-] 10.71 12.4; 11.12 1.28 112.07 0.24 13.39
tRNA 1FIR 10!A:45!A G:G pS_1 [cSH][-] 8.84 39.01; 116.62 77.61 -6.72 0.54 25.18
tRNA 1FIR 10!A:25!A G:C WC [cWW][XIX] 10.31 55.28; 58.28 3.0 3.03 0.43 7.18
tRNA 1FIR 11!A:24!A C:G WC [cWW][XIX] 10.63 52.51; 51.98 0.52 -2.83 0.12 14.09
tRNA 1FIR 12!A:23!A U:A WC [cWW][XX] 10.64 54.43; 52.43 2.0 -8.72 0.55 16.97
tRNA 1FIR 13!A:22!A C:G WC [cWW][XIX] 10.49 55.86; 56.09 0.24 -1.83 0.13 9.94
tRNA 1FIR 14!A:21!A A:A pfS [cSW][-] 9.08 42.42; 125.62 83.2 -1.39 0.34 10.56
tRNA 1FIR 15!A:48!A G:C rWb [tWW][XXII] 10.6 37.19; 62.16 24.97 167.89 0.5 13.33
tRNA 1FIR 17!A:18!A C:G rS(sp:O2*-O1P) [---][-] 8.98 168.75; 97.44 71.31 -113.82 1.6 54.68
tRNA 1FIR 18!A:55!A G:U fS_PSU [---][-] 8.93 25.84; 116.81 90.97 -147.01 0.71 28.28
tRNA 1FIR 22!A:46!A G:G rH_1 [tWH][VII] 11.0 30.99; 33.35 2.36 159.24 0.1 11.99
tRNA 1FIR 26!A:44!A A:G WC [cWW][VIII] 13.13 38.74; 43.9 5.16 -12.08 0.89 30.58
tRNA 1FIR 27!A:43!A U:A WC_PSU [---][-] 10.98 66.83; 50.53 16.3 -15.43 0.67 11.67
tRNA 1FIR 28!A:42!A C:G WC [cWW][XIX] 10.25 56.4; 53.22 3.18 -5.43 0.78 7.73
tRNA 1FIR 29!A:41!A A:U WC [cWW][XX] 9.95 57.24; 60.38 3.14 0.89 0.06 2.51
tRNA 1FIR 30!A:40!A G:C WC [cWW][XIX] 10.62 54.64; 54.89 0.25 -8.78 0.24 12.14
tRNA 1FIR 31!A:39!A A:U WC_PSU [---][-] 10.73 53.75; 66.77 13.02 -15.96 0.91 28.65
tRNA 1FIR 32!A:38!A C:A sWb [---][-] 11.05 59.72; 18.04 41.68 -15.45 0.52 24.01
tRNA 1FIR 33!A:36!A U:U S(bp:N3-O2P) [---][-] 9.33 74.85; 34.06 40.8 -160.81 0.73 20.76
tRNA 1FIR 49!A:65!A C:G WC [cWW][XIX] 10.53 53.49; 55.87 2.38 2.03 0.15 21.64
tRNA 1FIR 50!A:64!A A:U WC [cWW][XX] 10.14 58.96; 58.46 0.5 8.54 0.59 3.62
tRNA 1FIR 51!A:63!A G:C WC [cWW][XIX] 10.61 53.07; 51.89 1.17 6.8 0.85 5.9
tRNA 1FIR 52!A:62!A G:C WC [cWW][XIX] 10.49 57.94; 55.39 2.55 2.52 0.46 20.3
tRNA 1FIR 53!A:61!A G:C WC [cWW][XIX] 10.48 55.61; 56.67 1.05 -1.29 0.77 26.33
tRNA 1FIR 54!A:58!A U:A rH_1 [tWH][XXIV] 9.38 33.85; 23.42 10.43 -174.48 0.04 1.47
tRNA 1FIR 55!A:57!A U:A S_PSU(sb:O2*-N7) [---][-] 6.79 95.9; 41.85 54.04 -170.11 0.92 36.76