Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1GTR
BPC Identified: 32
Ambiguities: 0
| tRNA |
1GTR |
2!B:71!B |
G:C |
WC [cWW][XIX] |
10.69 |
51.89; 53.94 |
2.05 |
-2.22 |
0.47 |
9.04 |
| tRNA |
1GTR |
3!B:70!B |
G:C |
WC [cWW][XIX] |
10.51 |
53.94; 56.99 |
3.05 |
-8.03 |
0.16 |
10.48 |
| tRNA |
1GTR |
4!B:69!B |
G:C |
WC [cWW][XIX] |
10.77 |
54.03; 52.2 |
1.83 |
-16.27 |
0.3 |
17.76 |
| tRNA |
1GTR |
5!B:68!B |
G:C |
WC [cWW][XIX] |
10.66 |
53.54; 52.78 |
0.76 |
-14.14 |
1.31 |
26.49 |
| tRNA |
1GTR |
6!B:67!B |
U:A |
WC [cWW][XX] |
10.34 |
59.75; 54.64 |
5.11 |
-12.59 |
0.0 |
15.62 |
| tRNA |
1GTR |
7!B:66!B |
A:U |
WC [cWW][XX] |
10.75 |
54.49; 50.64 |
3.85 |
-5.8 |
0.22 |
7.83 |
| tRNA |
1GTR |
8!B:21!B |
U:A |
fS(sb:O2*-N1) [tSW][-] |
8.51 |
101.51; 56.78 |
44.73 |
153.1 |
0.53 |
22.83 |
| tRNA |
1GTR |
8!B:14!B |
U:A |
rH_1 [tWH][XXIV] |
9.59 |
36.24; 17.42 |
18.81 |
177.55 |
0.35 |
11.18 |
| tRNA |
1GTR |
9!B:23!B |
C:G |
rS*_2 [---][-] |
12.82 |
20.46; 9.22 |
11.25 |
66.57 |
0.02 |
24.81 |
| tRNA |
1GTR |
10!B:25!B |
G:C |
WC [cWW][XIX] |
10.58 |
52.92; 55.32 |
2.39 |
-3.65 |
0.4 |
11.54 |
| tRNA |
1GTR |
11!B:24!B |
C:G |
WC [cWW][XIX] |
10.61 |
54.62; 55.92 |
1.3 |
-8.35 |
0.31 |
7.44 |
| tRNA |
1GTR |
12!B:23!B |
C:G |
WC [cWW][XIX] |
10.78 |
53.23; 50.16 |
3.07 |
0.39 |
0.3 |
2.85 |
| tRNA |
1GTR |
13!B:45!B |
A:A |
rWb* [tWW][I] |
13.44 |
32.16; 31.49 |
0.67 |
148.21 |
0.58 |
16.65 |
| tRNA |
1GTR |
13!B:22!B |
A:A |
S [tSH][-] |
9.44 |
90.79; 6.38 |
84.4 |
-26.95 |
0.2 |
6.48 |
| tRNA |
1GTR |
14!B:21!B |
A:A |
pfS [cSW][-] |
9.84 |
34.6; 115.67 |
81.07 |
-23.35 |
0.56 |
12.72 |
| tRNA |
1GTR |
15!B:48!B |
G:C |
rWb [tWW][XXII] |
10.58 |
40.94; 57.76 |
16.82 |
-173.05 |
0.64 |
14.37 |
| tRNA |
1GTR |
18!B:55!B |
G:U |
fS_1 [tSW][-] |
8.63 |
28.64; 110.22 |
81.58 |
-138.88 |
0.47 |
20.12 |
| tRNA |
1GTR |
19!B:56!B |
G:C |
WC [cWW][XIX] |
10.47 |
57.45; 56.16 |
1.29 |
-17.44 |
0.78 |
19.1 |
| tRNA |
1GTR |
26!B:44!B |
A:C |
Wb [cWW][-] |
11.19 |
30.93; 62.61 |
31.68 |
-10.69 |
0.11 |
16.11 |
| tRNA |
1GTR |
27!B:43!B |
C:G |
WC [cWW][XIX] |
10.44 |
56.13; 51.79 |
4.34 |
-16.28 |
1.04 |
26.63 |
| tRNA |
1GTR |
28!B:42!B |
C:G |
WC [cWW][XIX] |
10.56 |
55.41; 51.59 |
3.82 |
-7.51 |
0.12 |
12.06 |
| tRNA |
1GTR |
29!B:41!B |
G:C |
WC [cWW][XIX] |
10.71 |
48.92; 54.95 |
6.03 |
-11.85 |
0.28 |
15.17 |
| tRNA |
1GTR |
30!B:40!B |
G:C |
WC [cWW][XIX] |
10.44 |
53.16; 57.81 |
4.64 |
-2.8 |
0.18 |
10.53 |
| tRNA |
1GTR |
31!B:39!B |
A:U |
WC [cWW][XX] |
10.7 |
54.18; 53.18 |
1.0 |
-1.57 |
0.95 |
17.28 |
| tRNA |
1GTR |
33!B:37!B |
U:A |
S [tSH][-] |
9.8 |
73.04; 3.22 |
69.82 |
-175.22 |
0.02 |
8.55 |
| tRNA |
1GTR |
49!B:65!B |
C:G |
WC [cWW][XIX] |
10.65 |
53.15; 50.74 |
2.41 |
-10.05 |
0.18 |
16.63 |
| tRNA |
1GTR |
50!B:64!B |
G:C |
WC [cWW][XIX] |
10.3 |
52.86; 60.72 |
7.86 |
-11.18 |
0.4 |
15.82 |
| tRNA |
1GTR |
51!B:63!B |
A:U |
WC [cWW][XX] |
10.32 |
55.01; 55.97 |
0.97 |
-17.07 |
0.54 |
17.59 |
| tRNA |
1GTR |
52!B:62!B |
G:C |
WC [cWW][XIX] |
10.68 |
55.7; 51.17 |
4.53 |
-7.15 |
0.13 |
12.75 |
| tRNA |
1GTR |
53!B:61!B |
G:C |
WC [cWW][XIX] |
10.58 |
55.26; 53.27 |
1.98 |
-9.0 |
0.6 |
20.57 |
| tRNA |
1GTR |
54!B:58!B |
U:A |
rH_1 [tWH][XXIV] |
9.5 |
36.38; 22.06 |
14.32 |
172.84 |
0.37 |
10.2 |
| tRNA |
1GTR |
55!B:57!B |
U:G |
S(sb:O2*-N7)_1 [---][-] |
6.8 |
78.77; 38.38 |
40.39 |
-170.97 |
1.59 |
29.17 |