Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1GTS
BPC Identified: 31
Ambiguities: 0
| tRNA |
1GTS |
2!B:71!B |
G:C |
WC [cWW][XIX] |
10.87 |
51.15; 53.66 |
2.51 |
-0.68 |
0.53 |
15.2 |
| tRNA |
1GTS |
3!B:70!B |
G:C |
WC [cWW][XIX] |
10.6 |
52.84; 56.27 |
3.43 |
-10.48 |
0.05 |
13.04 |
| tRNA |
1GTS |
4!B:69!B |
G:C |
WC [cWW][XIX] |
10.82 |
53.9; 54.04 |
0.14 |
-14.94 |
0.1 |
19.8 |
| tRNA |
1GTS |
5!B:68!B |
G:C |
WC [cWW][XIX] |
10.63 |
52.77; 53.31 |
0.54 |
-16.03 |
0.87 |
25.98 |
| tRNA |
1GTS |
6!B:67!B |
U:A |
WC [cWW][XX] |
10.4 |
60.44; 56.79 |
3.66 |
-13.5 |
0.33 |
14.49 |
| tRNA |
1GTS |
7!B:66!B |
A:U |
WC [cWW][XX] |
10.83 |
52.49; 50.8 |
1.69 |
-5.37 |
0.11 |
5.25 |
| tRNA |
1GTS |
8!B:21!B |
U:A |
fS(sb:O2*-N1) [tSW][-] |
8.3 |
100.89; 60.33 |
40.56 |
153.84 |
0.59 |
15.22 |
| tRNA |
1GTS |
8!B:14!B |
U:A |
rH_1 [tWH][XXIV] |
9.51 |
37.47; 17.11 |
20.36 |
164.79 |
0.21 |
6.98 |
| tRNA |
1GTS |
9!B:23!B |
C:G |
rS*_2 [---][-] |
12.57 |
16.91; 9.88 |
7.03 |
47.4 |
1.24 |
24.2 |
| tRNA |
1GTS |
10!B:25!B |
G:C |
WC [cWW][XIX] |
10.6 |
53.05; 52.21 |
0.84 |
-4.7 |
0.02 |
7.76 |
| tRNA |
1GTS |
11!B:24!B |
C:G |
WC [cWW][XIX] |
10.62 |
57.04; 54.08 |
2.96 |
-6.32 |
0.0 |
4.97 |
| tRNA |
1GTS |
12!B:23!B |
C:G |
WC [cWW][XIX] |
10.57 |
54.2; 51.98 |
2.22 |
-1.6 |
0.22 |
5.27 |
| tRNA |
1GTS |
13!B:45!B |
A:A |
rWb* [tWW][I] |
13.33 |
32.52; 29.07 |
3.45 |
158.29 |
0.55 |
15.22 |
| tRNA |
1GTS |
13!B:22!B |
A:A |
S [tSH][-] |
9.29 |
91.5; 6.9 |
84.6 |
-26.94 |
0.06 |
6.26 |
| tRNA |
1GTS |
14!B:21!B |
A:A |
pfS [cSW][-] |
9.46 |
34.94; 121.12 |
86.18 |
-17.81 |
0.59 |
14.67 |
| tRNA |
1GTS |
15!B:48!B |
G:C |
rWb [tWW][XXII] |
10.56 |
38.81; 57.48 |
18.67 |
-172.72 |
0.72 |
15.58 |
| tRNA |
1GTS |
18!B:55!B |
G:U |
fS_1 [tSW][-] |
8.91 |
26.24; 104.26 |
78.02 |
-135.11 |
0.16 |
25.59 |
| tRNA |
1GTS |
19!B:56!B |
G:C |
WC [cWW][XIX] |
10.53 |
53.98; 52.97 |
1.01 |
-12.8 |
0.82 |
22.25 |
| tRNA |
1GTS |
27!B:43!B |
C:G |
WC [cWW][XIX] |
10.59 |
50.48; 55.6 |
5.12 |
-15.52 |
0.42 |
19.72 |
| tRNA |
1GTS |
28!B:42!B |
C:G |
WC [cWW][XIX] |
10.53 |
54.72; 51.64 |
3.08 |
-12.41 |
0.02 |
15.25 |
| tRNA |
1GTS |
29!B:41!B |
G:C |
WC [cWW][XIX] |
10.5 |
49.11; 55.98 |
6.87 |
-13.99 |
0.34 |
19.29 |
| tRNA |
1GTS |
30!B:40!B |
G:C |
WC [cWW][XIX] |
10.48 |
51.25; 57.79 |
6.54 |
-1.8 |
0.08 |
2.81 |
| tRNA |
1GTS |
31!B:39!B |
A:U |
WC [cWW][XX] |
10.77 |
51.68; 50.13 |
1.56 |
3.38 |
0.06 |
15.3 |
| tRNA |
1GTS |
33!B:37!B |
U:A |
S [tSH][-] |
9.59 |
77.79; 5.16 |
72.64 |
179.91 |
0.39 |
11.77 |
| tRNA |
1GTS |
49!B:65!B |
C:G |
WC [cWW][XIX] |
10.56 |
52.73; 51.85 |
0.87 |
-11.68 |
0.32 |
17.33 |
| tRNA |
1GTS |
50!B:64!B |
G:C |
WC [cWW][XIX] |
10.39 |
48.62; 59.82 |
11.2 |
-9.79 |
0.04 |
10.31 |
| tRNA |
1GTS |
51!B:63!B |
A:U |
WC [cWW][XX] |
10.49 |
55.45; 51.88 |
3.57 |
-16.31 |
0.11 |
14.61 |
| tRNA |
1GTS |
52!B:62!B |
G:C |
WC [cWW][XIX] |
10.6 |
50.64; 52.44 |
1.8 |
-6.02 |
0.0 |
10.54 |
| tRNA |
1GTS |
53!B:61!B |
G:C |
WC [cWW][XIX] |
10.56 |
53.66; 53.57 |
0.09 |
-6.56 |
0.63 |
17.82 |
| tRNA |
1GTS |
54!B:58!B |
U:A |
rH_1 [tWH][XXIV] |
9.71 |
33.78; 18.6 |
15.18 |
176.42 |
0.09 |
7.4 |
| tRNA |
1GTS |
55!B:57!B |
U:G |
S(sb:O2*-N7)_1 [---][-] |
6.74 |
78.05; 39.88 |
38.17 |
-163.25 |
1.36 |
33.19 |