Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1HC8 BPC Identified: 64 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
rRNA 1HC8 101!C:158!C G:U Wb [cWW][XXVIII] 10.57 40.37; 66.1 25.74 0.9 0.02 10.75
rRNA 1HC8 102!C:157!C C:G WC [cWW][XIX] 10.56 57.06; 55.15 1.9 -12.05 0.22 17.07
rRNA 1HC8 103!C:156!C C:G WC [cWW][XIX] 10.58 54.01; 53.12 0.89 -2.16 0.29 7.21
rRNA 1HC8 104!C:155!C A:U WC [cWW][XX] 10.58 55.94; 58.07 2.13 1.78 0.07 2.05
rRNA 1HC8 105!C:154!C G:C WC [cWW][XIX] 10.76 54.58; 56.45 1.87 -6.74 0.0 16.24
rRNA 1HC8 105!C:135!C G:A rS [tSS][-] 8.27 86.99; 61.35 25.65 161.13 0.22 18.7
rRNA 1HC8 106!C:153!C G:A S [tSH][XI] 9.54 96.0; 6.96 89.04 19.21 0.55 16.66
rRNA 1HC8 107!C:131!C A:U WC [cWW][XX] 10.5 56.01; 52.41 3.6 -16.99 0.19 24.57
rRNA 1HC8 108!C:130!C U:A WC [cWW][XX] 10.33 54.36; 58.61 4.26 -2.44 0.15 11.29
rRNA 1HC8 109!C:129!C G:C WC [cWW][XIX] 10.83 52.67; 52.59 0.08 -5.79 0.45 2.74
rRNA 1HC8 110!C:138!C U:A H_1 [cWH][XXIII] 8.29 57.46; 54.63 2.83 -6.03 0.39 11.57
rRNA 1HC8 112!C:126!C G:C WC [cWW][XIX] 11.13 46.96; 51.12 4.16 -6.49 0.07 10.12
rRNA 1HC8 113!C:125!C G:C WC [cWW][XIX] 10.6 52.84; 58.63 5.78 -15.81 0.21 15.96
rRNA 1HC8 114!C:124!C C:G WC [cWW][XIX] 10.55 56.86; 55.8 1.06 -12.51 0.24 19.27
rRNA 1HC8 115!C:123!C U:A sWC [---][-] 11.07 82.13; 25.79 56.33 -1.1 0.02 15.76
rRNA 1HC8 116!C:118!C U:G S(sb:O2*-N7)_1 [---][-] 6.87 82.49; 40.46 42.04 176.64 1.86 14.76
rRNA 1HC8 121!C:141!C G:G H_1 [cWH][VI] 11.65 60.66; 25.39 35.27 0.01 0.32 9.99
rRNA 1HC8 122!C:142!C C:C H_1 [---][-] 9.98 66.51; 30.51 36.0 -5.59 0.23 5.96
rRNA 1HC8 127!C:138!C A:A fS(sb:O2*-N1)_1 [---][-] 9.23 52.86; 75.96 23.1 -160.48 1.27 30.24
rRNA 1HC8 132!C:136!C U:A rWC [tWW][XXI] 11.09 38.76; 32.3 6.46 148.47 0.18 14.14
rRNA 1HC8 133!C:135!C U:A S(sb:O2*-N7) [---][-] 6.74 81.83; 43.24 38.59 -160.71 0.2 27.23
rRNA 1HC8 134!C:155!C A:U rpS(sb:O2*-N3) [cSS][-] 5.57 90.02; 155.71 65.69 -50.62 1.22 36.42
rRNA 1HC8 135!C:154!C A:C rpS(bs:O2-O2*) [cSS][-] 5.91 145.17; 104.0 41.18 -65.04 1.79 14.17
rRNA 1HC8 136!C:153!C A:A pfS(sb:O2*-N1) [---][-] 8.68 161.63; 36.5 125.12 58.35 0.17 21.95
rRNA 1HC8 137!C:152!C G:C WC [cWW][XIX] 10.67 59.66; 53.53 6.14 -4.24 0.06 7.96
rRNA 1HC8 139!C:140!C A:A pS [cSH][-] 6.89 139.97; 34.7 105.27 5.92 0.16 9.92
rRNA 1HC8 140!C:151!C A:U WC [cWW][XX] 10.06 56.87; 62.86 6.0 3.1 0.62 19.95
rRNA 1HC8 141!C:150!C G:C WC [cWW][XIX] 10.53 54.39; 57.39 3.0 4.59 0.12 8.2
rRNA 1HC8 142!C:149!C C:G WC [cWW][XIX] 10.57 55.56; 50.26 5.29 7.33 0.14 5.7
rRNA 1HC8 143!C:148!C G:A S [tSH][XI] 9.55 95.8; 10.47 85.32 40.34 0.04 9.64
rRNA 1HC8 144!C:147!C U:U S(bp:N3-O2P) [---][-] 7.02 89.14; 40.56 48.59 -156.51 0.63 15.51
rRNA 1HC8 144!C:146!C U:A S(sb:O2*-N7) [---][-] 6.94 75.18; 37.08 38.1 -171.32 1.48 24.76
rRNA 1HC8 301!D:358!D G:U Wb [cWW][XXVIII] 10.47 39.23; 65.75 26.52 3.16 0.29 5.89
rRNA 1HC8 302!D:357!D C:G WC [cWW][XIX] 10.46 55.99; 51.11 4.88 -9.37 0.19 17.01
rRNA 1HC8 303!D:356!D C:G WC [cWW][XIX] 10.71 52.63; 54.27 1.64 -5.68 0.03 12.32
rRNA 1HC8 304!D:355!D A:U WC [cWW][XX] 10.46 59.39; 57.76 1.64 -4.23 0.07 4.79
rRNA 1HC8 305!D:354!D G:C WC [cWW][XIX] 10.69 53.77; 56.21 2.44 -6.7 0.01 7.68
rRNA 1HC8 305!D:335!D G:A rS [tSS][-] 8.15 86.55; 62.55 24.0 166.76 0.35 18.92
rRNA 1HC8 306!D:353!D G:A S [tSH][XI] 9.63 98.76; 7.55 91.2 28.48 0.54 17.43
rRNA 1HC8 307!D:331!D A:U WC [cWW][XX] 10.6 53.83; 54.11 0.28 -14.93 0.37 20.54
rRNA 1HC8 308!D:330!D U:A WC [cWW][XX] 10.65 54.13; 49.72 4.41 -6.83 0.44 17.59
rRNA 1HC8 309!D:329!D G:C WC [cWW][XIX] 10.8 54.34; 52.79 1.55 -8.15 0.19 6.44
rRNA 1HC8 310!D:338!D U:A H_1 [cWH][XXIII] 8.26 60.04; 55.23 4.81 -5.02 0.06 14.87
rRNA 1HC8 312!D:326!D G:C WC [cWW][XIX] 11.1 49.15; 48.9 0.25 -5.82 0.09 9.52
rRNA 1HC8 313!D:325!D G:C WC [cWW][XIX] 10.59 55.14; 54.72 0.42 -15.0 0.2 23.98
rRNA 1HC8 314!D:324!D C:G WC [cWW][XIX] 10.42 59.42; 53.91 5.51 -18.09 0.06 26.43
rRNA 1HC8 315!D:323!D U:A sWC [---][-] 10.93 87.08; 24.69 62.4 0.49 0.05 13.23
rRNA 1HC8 316!D:318!D U:G S(sb:O2*-N7)_1 [---][-] 6.69 84.79; 40.74 44.05 -172.35 1.07 24.91
rRNA 1HC8 321!D:350!D G:C rH* [---][-] 14.49 14.79; 5.14 9.65 77.78 0.05 4.43
rRNA 1HC8 321!D:341!D G:G H_1 [cWH][VI] 11.56 61.35; 27.76 33.59 -13.01 0.45 5.43
rRNA 1HC8 322!D:342!D C:C H_1 [---][-] 10.07 69.0; 29.9 39.1 -9.45 0.61 14.24
rRNA 1HC8 332!D:336!D U:A rWC [tWW][XXI] 11.12 39.65; 33.5 6.15 150.63 0.09 13.53
rRNA 1HC8 333!D:335!D U:A S(sb:O2*-N7) [---][-] 6.63 86.18; 39.79 46.39 -166.6 0.11 34.34
rRNA 1HC8 334!D:355!D A:U rpS(sb:O2*-N3) [cSS][-] 5.68 88.62; 152.68 64.06 -57.9 0.54 34.07
rRNA 1HC8 335!D:354!D A:C rpS(bs:O2-O2*) [cSS][-] 5.95 149.36; 102.93 46.43 -63.53 0.56 22.76
rRNA 1HC8 336!D:353!D A:A pfS(sb:O2*-N1) [---][-] 8.66 164.44; 38.1 126.34 57.02 0.52 21.05
rRNA 1HC8 337!D:352!D G:C WC [cWW][XIX] 10.68 56.36; 54.1 2.27 -2.89 0.04 7.51
rRNA 1HC8 339!D:340!D A:A pS [cSH][-] 6.92 138.99; 36.81 102.19 -0.35 0.2 6.56
rRNA 1HC8 340!D:351!D A:U WC [cWW][XX] 10.12 54.65; 60.2 5.55 3.82 0.27 11.84
rRNA 1HC8 341!D:350!D G:C WC [cWW][XIX] 10.64 54.43; 53.16 1.27 13.47 0.37 9.83
rRNA 1HC8 342!D:349!D C:G WC [cWW][XIX] 10.67 56.31; 51.15 5.16 10.57 0.22 8.52
rRNA 1HC8 343!D:348!D G:A S [tSH][XI] 9.79 95.28; 9.69 85.59 43.2 0.15 8.9
rRNA 1HC8 344!D:347!D U:U S(bp:N3-O2P) [---][-] 7.33 90.13; 38.25 51.87 -157.15 0.82 11.58
rRNA 1HC8 344!D:346!D U:A S(sb:O2*-N7) [---][-] 7.0 79.06; 39.0 40.06 -172.05 1.69 21.91