Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1HMH BPC Identified: 75 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
HH_ribozyme 1HMH 27!A:17!B G:C WC [cWW][XIX] 10.35 54.21; 56.55 2.34 -18.12 0.48 15.38
HH_ribozyme 1HMH 26!A:16!B G:C WC [cWW][XIX] 10.17 55.89; 57.51 1.62 -12.48 0.49 25.26
HH_ribozyme 1HMH 25!A:15!B C:G WC [cWW][XIX] 10.18 55.69; 56.68 0.99 -15.73 0.19 16.0
HH_ribozyme 1HMH 24!A:14!B G:C WC [cWW][XIX] 10.37 58.17; 53.58 4.6 -15.05 0.06 15.94
HH_ribozyme 1HMH 23!A:13!B A:T WC [---][-] 10.38 52.92; 51.71 1.21 -15.81 0.2 13.55
HH_ribozyme 1HMH 22!A:12!B C:G WC [cWW][XIX] 10.31 56.21; 55.37 0.84 -6.3 0.08 6.73
HH_ribozyme 1HMH 21!A:11!B C:G WC [cWW][XIX] 10.27 60.63; 55.13 5.5 -9.67 0.12 16.1
HH_ribozyme 1HMH 30!A:170!B C:C Wb [cWW][-] 8.07 75.55; 47.15 28.4 -17.1 0.35 19.55
HH_ribozyme 1HMH 40!A:60!A U:A S(sb:O2*-N7) [---][-] 6.47 79.69; 36.93 42.75 177.5 0.87 19.13
HH_ribozyme 1HMH 70!A:140!A U:A pfS [cSW][-] 9.05 122.62; 40.51 82.12 -5.02 0.18 19.04
HH_ribozyme 1HMH 80!A:130!A G:A S [tSH][XI] 8.93 102.0; 9.69 92.31 -9.79 0.94 26.69
HH_ribozyme 1HMH 90!A:130!E A:A pfS(sb:O2*-N1) [---][-] 9.71 37.91; 148.95 111.05 -160.2 0.94 71.18
HH_ribozyme 1HMH 90!A:120!A A:G S [tSH][XI] 9.25 8.22; 97.14 88.92 -46.16 0.23 14.18
HH_ribozyme 1HMH 101!A:111!A G:C WC [cWW][XIX] 10.63 54.43; 53.81 0.62 2.94 0.1 5.5
HH_ribozyme 1HMH 102!A:120!E G:G rpS(ss:O2*-O2*) [---][-] 6.34 156.45; 168.46 12.01 -174.55 1.08 44.76
HH_ribozyme 1HMH 102!A:112!A G:C WC [cWW][XIX] 10.26 56.59; 57.34 0.76 -7.54 0.24 13.43
HH_ribozyme 1HMH 103!A:111!E C:C rpS(ps:O1P-O2*)_1 [---][-] 7.28 131.93; 100.09 31.84 153.68 0.56 53.43
HH_ribozyme 1HMH 103!A:113!A C:G WC [cWW][XIX] 10.3 56.39; 53.34 3.05 0.67 0.06 4.18
HH_ribozyme 1HMH 104!A:114!A C:G WC [cWW][XIX] 10.29 55.76; 55.16 0.59 6.09 0.0 6.86
HH_ribozyme 1HMH 21L!A:24L!A G:A S [tSH][XI] 9.14 98.92; 11.89 87.03 -73.42 0.74 14.09
HH_ribozyme 1HMH 21L!A:23L!A G:A S(sb:O2*-N7) [---][-] 7.39 93.7; 32.15 61.55 -168.66 2.2 29.41
HH_ribozyme 1HMH 22L!A:24L!C A:A rWb* [tWW][I] 13.12 38.38; 34.52 3.87 79.72 0.95 49.63
HH_ribozyme 1HMH 23L!A:104!C A:C rpS(sb:O2*-N3) [cSS][-] 5.31 94.3; 145.88 51.57 -71.56 0.04 31.8
HH_ribozyme 1HMH 24L!A:113!C A:G rS [tSS][-] 7.81 69.38; 85.92 16.54 169.73 0.18 20.25
HH_ribozyme 1HMH 24L!A:103!C A:C rpS(bs:O2-O2*) [cSS][-] 5.79 158.91; 101.05 57.87 -71.25 0.38 21.79
HH_ribozyme 1HMH 114!A:112!C G:C rS(ss:O2*-O2*) [---][-] 5.78 156.39; 162.17 5.78 -112.99 1.01 22.02
HH_ribozyme 1HMH 111!A:90!E C:A rpS(sb:O2*-N3) [cSS][-] 6.42 136.92; 79.41 57.51 -94.24 0.05 59.29
HH_ribozyme 1HMH 152!A:162!B C:G WC [cWW][XIX] 10.64 57.3; 54.39 2.91 -15.99 0.02 19.29
HH_ribozyme 1HMH 153!A:163!B C:G WC [cWW][XIX] 10.6 51.35; 52.96 1.61 -6.65 0.02 11.94
HH_ribozyme 1HMH 154!A:164!B G:C WC [cWW][XIX] 10.23 54.1; 54.28 0.18 -9.78 0.16 8.06
HH_ribozyme 1HMH 155!A:165!B U:A WC [cWW][XX] 10.08 63.06; 57.02 6.04 -10.83 0.32 7.22
HH_ribozyme 1HMH 27!C:17!D G:C WC [cWW][XIX] 10.33 57.53; 57.32 0.21 -5.12 0.07 9.93
HH_ribozyme 1HMH 26!C:16!D G:C WC [cWW][XIX] 10.7 53.31; 53.87 0.57 -10.79 0.07 18.59
HH_ribozyme 1HMH 25!C:15!D C:G WC [cWW][XIX] 10.49 56.52; 51.1 5.42 -12.7 0.05 10.38
HH_ribozyme 1HMH 24!C:14!D G:C WC [cWW][XIX] 10.42 55.48; 54.38 1.1 -10.09 0.31 21.3
HH_ribozyme 1HMH 23!C:13!D A:T WC [---][-] 10.49 52.47; 53.31 0.84 -12.96 0.17 16.95
HH_ribozyme 1HMH 22!C:12!D C:G WC [cWW][XIX] 10.32 55.39; 56.97 1.58 -6.47 0.11 13.21
HH_ribozyme 1HMH 21!C:11!D C:G WC [cWW][XIX] 10.18 57.45; 55.65 1.8 -8.16 0.01 8.12
HH_ribozyme 1HMH 30!C:170!D C:C Wb [cWW][-] 7.97 87.99; 48.54 39.45 -17.98 0.07 18.9
HH_ribozyme 1HMH 40!C:60!C U:A S(sb:O2*-N7) [---][-] 6.61 81.88; 46.01 35.87 -178.0 1.39 14.24
HH_ribozyme 1HMH 70!C:140!C U:A pfS [cSW][-] 9.16 121.58; 36.99 84.59 -1.17 0.73 26.5
HH_ribozyme 1HMH 80!C:130!C G:A S [tSH][XI] 8.86 99.2; 7.37 91.83 -39.89 0.59 27.02
HH_ribozyme 1HMH 90!C:120!C A:G S [tSH][XI] 9.53 3.31; 96.53 93.22 -75.9 0.06 8.13
HH_ribozyme 1HMH 101!C:111!C G:C WC [cWW][XIX] 10.53 53.91; 55.24 1.32 -3.27 0.39 11.23
HH_ribozyme 1HMH 102!C:112!C G:C WC [cWW][XIX] 10.39 56.94; 53.86 3.08 -10.71 0.22 17.84
HH_ribozyme 1HMH 103!C:113!C C:G WC [cWW][XIX] 10.48 55.42; 53.34 2.08 -6.59 0.08 14.04
HH_ribozyme 1HMH 104!C:114!C C:G WC [cWW][XIX] 10.48 56.39; 51.54 4.85 -2.67 0.05 3.9
HH_ribozyme 1HMH 21L!C:24L!C G:A S [tSH][XI] 9.06 95.52; 13.37 82.15 -89.97 0.01 24.36
HH_ribozyme 1HMH 21L!C:23L!C G:A S(sb:O2*-N7) [---][-] 7.31 88.29; 31.5 56.79 -172.34 2.22 27.59
HH_ribozyme 1HMH 152!C:162!D C:G WC [cWW][XIX] 10.75 54.56; 50.91 3.65 -19.48 0.16 20.01
HH_ribozyme 1HMH 153!C:163!D C:G WC [cWW][XIX] 10.49 54.3; 53.65 0.65 -18.55 0.19 17.92
HH_ribozyme 1HMH 154!C:164!D G:C WC [cWW][XIX] 10.36 56.9; 54.19 2.7 -10.71 0.1 19.6
HH_ribozyme 1HMH 155!C:165!D U:A WC [cWW][XX] 10.32 58.92; 53.75 5.17 -7.97 0.07 9.0
HH_ribozyme 1HMH 27!E:17!F G:C WC [cWW][XIX] 10.45 52.38; 53.86 1.48 -7.86 0.41 2.88
HH_ribozyme 1HMH 26!E:16!F G:C WC [cWW][XIX] 10.35 54.16; 55.69 1.53 -10.01 0.08 11.57
HH_ribozyme 1HMH 25!E:15!F C:G WC [cWW][XIX] 10.21 55.82; 53.02 2.8 -7.57 0.26 7.98
HH_ribozyme 1HMH 24!E:14!F G:C WC [cWW][XIX] 10.14 56.85; 62.95 6.1 -13.48 0.13 16.86
HH_ribozyme 1HMH 23!E:13!F A:T WC [---][-] 10.28 54.26; 51.53 2.74 -14.67 0.22 19.23
HH_ribozyme 1HMH 22!E:12!F C:G WC [cWW][XIX] 10.27 57.22; 52.58 4.63 -6.76 0.12 9.85
HH_ribozyme 1HMH 21!E:11!F C:G WC [cWW][XIX] 10.42 55.26; 56.15 0.89 -5.04 0.58 18.67
HH_ribozyme 1HMH 30!E:170!F C:C Wb [cWW][-] 8.09 83.97; 49.55 34.43 -11.49 0.5 16.55
HH_ribozyme 1HMH 40!E:60!E U:A S(sb:O2*-N7) [---][-] 6.21 82.28; 42.84 39.44 -177.71 2.03 19.98
HH_ribozyme 1HMH 70!E:140!E U:A pfS [cSW][-] 9.36 126.74; 33.2 93.54 -7.72 0.87 32.73
HH_ribozyme 1HMH 80!E:130!E G:A S [tSH][XI] 9.14 101.1; 5.9 95.2 -31.2 0.75 26.3
HH_ribozyme 1HMH 90!E:120!E A:G S [tSH][XI] 9.44 10.77; 99.25 88.48 -51.54 0.31 13.41
HH_ribozyme 1HMH 101!E:111!E G:C WC [cWW][XIX] 10.69 56.2; 55.4 0.8 2.76 0.0 2.59
HH_ribozyme 1HMH 102!E:112!E G:C WC [cWW][XIX] 10.47 51.09; 58.74 7.64 -4.16 0.18 10.94
HH_ribozyme 1HMH 103!E:113!E C:G WC [cWW][XIX] 10.39 54.14; 54.7 0.55 -5.59 0.17 7.39
HH_ribozyme 1HMH 104!E:114!E C:G WC [cWW][XIX] 10.61 57.42; 52.6 4.82 2.54 0.08 2.98
HH_ribozyme 1HMH 21L!E:24L!E G:A S [tSH][XI] 9.16 96.03; 9.48 86.54 -90.57 0.29 15.85
HH_ribozyme 1HMH 21L!E:23L!E G:A S(sb:O2*-N7) [---][-] 7.49 89.3; 31.18 58.12 -168.65 2.22 25.42
HH_ribozyme 1HMH 152!E:162!F C:G WC [cWW][XIX] 10.45 49.99; 57.07 7.08 -24.3 0.37 20.06
HH_ribozyme 1HMH 153!E:163!F C:G WC [cWW][XIX] 10.48 52.91; 57.73 4.83 -14.06 0.52 7.44
HH_ribozyme 1HMH 154!E:164!F G:C WC [cWW][XIX] 10.1 53.64; 57.03 3.38 -23.19 0.38 28.16
HH_ribozyme 1HMH 155!E:165!F U:A WC [cWW][XX] 10.33 51.8; 58.75 6.95 -10.33 0.24 8.6