Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1HQ1
BPC Identified: 23
Ambiguities: 0
| SRP_RNA |
1HQ1 |
130!B:178!B |
G:C |
WC [cWW][XIX] |
10.83 |
52.33; 53.63 |
1.3 |
-9.54 |
0.74 |
13.94 |
| SRP_RNA |
1HQ1 |
131!B:177!B |
G:C |
WC [cWW][XIX] |
10.45 |
55.0; 58.62 |
3.62 |
-10.61 |
0.08 |
15.86 |
| SRP_RNA |
1HQ1 |
132!B:176!B |
C:G |
WC [cWW][XIX] |
10.57 |
59.19; 53.9 |
5.29 |
-9.32 |
0.03 |
16.25 |
| SRP_RNA |
1HQ1 |
133!B:175!B |
U:A |
WC [cWW][XX] |
10.38 |
56.33; 57.73 |
1.39 |
-11.95 |
0.18 |
19.03 |
| SRP_RNA |
1HQ1 |
134!B:174!B |
C:G |
WC [cWW][XIX] |
10.59 |
56.33; 54.57 |
1.76 |
-10.5 |
0.17 |
14.91 |
| SRP_RNA |
1HQ1 |
135!B:173!B |
U:A |
WC [cWW][XX] |
10.56 |
55.71; 55.21 |
0.5 |
-11.59 |
0.05 |
12.99 |
| SRP_RNA |
1HQ1 |
136!B:172!B |
G:C |
WC [cWW][XIX] |
10.76 |
53.71; 53.0 |
0.72 |
-12.13 |
0.02 |
18.52 |
| SRP_RNA |
1HQ1 |
137!B:171!B |
U:G |
Wb [cWW][XXVIII] |
10.26 |
69.33; 44.85 |
24.48 |
-12.28 |
0.59 |
17.03 |
| SRP_RNA |
1HQ1 |
138!B:170!B |
U:G |
Wb [cWW][XXVIII] |
10.33 |
68.89; 42.66 |
26.23 |
-14.6 |
0.19 |
22.86 |
| SRP_RNA |
1HQ1 |
139!B:169!B |
U:A |
WC [cWW][XX] |
10.72 |
55.74; 52.76 |
2.98 |
-5.78 |
0.04 |
7.27 |
| SRP_RNA |
1HQ1 |
140!B:164!B |
A:A |
rS(sp:O2*-O1P) [---][-] |
9.53 |
159.07; 120.19 |
38.88 |
97.15 |
0.51 |
67.35 |
| SRP_RNA |
1HQ1 |
144!B:167!B |
G:C |
WC [cWW][XIX] |
10.52 |
58.43; 56.67 |
1.76 |
-11.24 |
0.37 |
16.31 |
| SRP_RNA |
1HQ1 |
145!B:166!B |
G:C |
WC [cWW][XIX] |
10.58 |
56.71; 54.19 |
2.52 |
-8.08 |
0.76 |
20.82 |
| SRP_RNA |
1HQ1 |
146!B:165!B |
U:G |
Wb [cWW][XXVIII] |
10.67 |
64.12; 39.59 |
24.53 |
-8.9 |
0.03 |
16.47 |
| SRP_RNA |
1HQ1 |
147!B:164!B |
C:A |
S [tSH][-] |
9.74 |
84.08; 3.78 |
80.3 |
-94.37 |
0.07 |
12.56 |
| SRP_RNA |
1HQ1 |
148!B:163!B |
A:C |
rH_1 [rWH][XXV] |
11.08 |
6.82; 26.03 |
19.21 |
-163.81 |
0.33 |
17.19 |
| SRP_RNA |
1HQ1 |
148!B:162!B |
A:G |
S(bp:N1-O2P)_2 [---][-] |
12.14 |
36.89; 66.06 |
29.17 |
159.76 |
1.64 |
14.53 |
| SRP_RNA |
1HQ1 |
149!B:162!B |
G:G |
S_1 [tSH][-] |
11.62 |
12.43; 86.66 |
74.23 |
-18.37 |
0.07 |
10.23 |
| SRP_RNA |
1HQ1 |
150!B:161!B |
G:A |
WC [cWW][VIII] |
12.66 |
47.26; 50.59 |
3.32 |
-6.44 |
0.01 |
18.7 |
| SRP_RNA |
1HQ1 |
151!B:160!B |
U:A |
WC [cWW][XX] |
10.68 |
54.24; 54.22 |
0.02 |
-6.71 |
0.63 |
17.01 |
| SRP_RNA |
1HQ1 |
152!B:159!B |
C:G |
WC [cWW][XIX] |
10.57 |
55.34; 55.69 |
0.35 |
-6.12 |
0.2 |
14.25 |
| SRP_RNA |
1HQ1 |
153!B:158!B |
C:G |
WC [cWW][XIX] |
10.55 |
59.11; 55.95 |
3.16 |
-0.93 |
0.18 |
6.26 |
| SRP_RNA |
1HQ1 |
154!B:157!B |
G:A |
S [tSH][XI] |
9.12 |
99.43; 10.98 |
88.45 |
-83.95 |
0.68 |
12.44 |