Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1HVU
BPC Identified: 48
Ambiguities: 0
| vRNA |
1HVU |
7!C:24!C |
U:A |
WC [cWW][XX] |
11.88 |
31.72; 44.64 |
12.92 |
-43.31 |
0.13 |
59.02 |
| vRNA |
1HVU |
8!C:23!C |
U:G |
WC [---][-] |
10.86 |
47.45; 47.34 |
0.1 |
-29.18 |
1.12 |
26.64 |
| vRNA |
1HVU |
9!C:22!C |
C:G |
WC [cWW][X!IX] |
10.95 |
50.5; 49.26 |
1.23 |
-21.73 |
0.31 |
23.1 |
| vRNA |
1HVU |
10!C:21!C |
C:G |
WC [cWW][X!IX] |
10.84 |
51.7; 53.16 |
1.46 |
-14.34 |
0.56 |
12.76 |
| vRNA |
1HVU |
11!C:20!C |
G:C |
WC [cWW][X!IX] |
10.64 |
53.0; 51.92 |
1.08 |
-5.25 |
0.33 |
15.46 |
| vRNA |
1HVU |
14!C:33!C |
U:A |
WC [cWW][XX] |
10.48 |
56.16; 56.1 |
0.06 |
-7.58 |
0.43 |
16.43 |
| vRNA |
1HVU |
15!C:32!C |
U:A |
WC [cWW][XX] |
10.69 |
52.3; 54.19 |
1.89 |
-13.77 |
0.43 |
21.9 |
| vRNA |
1HVU |
16!C:31!C |
C:G |
WC [cWW][X!IX] |
10.75 |
53.66; 53.47 |
0.19 |
-9.43 |
0.25 |
15.48 |
| vRNA |
1HVU |
17!C:30!C |
A:U |
WC [cWW][XX] |
10.7 |
53.55; 52.94 |
0.61 |
-7.64 |
0.65 |
18.6 |
| vRNA |
1HVU |
18!C:29!C |
G:C |
WC [cWW][X!IX] |
10.83 |
53.48; 53.7 |
0.22 |
4.81 |
0.14 |
9.53 |
| vRNA |
1HVU |
19!C:28!C |
U:A |
WC [cWW][XX] |
11.29 |
48.47; 44.63 |
3.84 |
-21.07 |
0.26 |
28.65 |
| vRNA |
1HVU |
22!C:27!C |
G:A |
pfS_1 [---][-] |
8.25 |
129.84; 70.6 |
59.24 |
6.3 |
0.19 |
4.44 |
| vRNA |
1HVU |
7!F:24!F |
U:A |
WC [cWW][XX] |
11.88 |
31.7; 44.64 |
12.94 |
-43.27 |
0.13 |
59.04 |
| vRNA |
1HVU |
8!F:23!F |
U:G |
WC [---][-] |
10.86 |
47.44; 47.31 |
0.13 |
-29.15 |
1.12 |
26.65 |
| vRNA |
1HVU |
9!F:22!F |
C:G |
WC [cWW][X!IX] |
10.95 |
50.51; 49.29 |
1.22 |
-21.75 |
0.31 |
23.09 |
| vRNA |
1HVU |
10!F:21!F |
C:G |
WC [cWW][X!IX] |
10.84 |
51.69; 53.14 |
1.45 |
-14.36 |
0.56 |
12.76 |
| vRNA |
1HVU |
11!F:20!F |
G:C |
WC [cWW][X!IX] |
10.64 |
52.98; 51.92 |
1.06 |
-5.26 |
0.33 |
15.44 |
| vRNA |
1HVU |
14!F:33!F |
U:A |
WC [cWW][XX] |
10.48 |
56.14; 56.09 |
0.05 |
-7.62 |
0.43 |
16.41 |
| vRNA |
1HVU |
15!F:32!F |
U:A |
WC [cWW][XX] |
10.69 |
52.31; 54.21 |
1.9 |
-13.76 |
0.43 |
21.89 |
| vRNA |
1HVU |
16!F:31!F |
C:G |
WC [cWW][X!IX] |
10.75 |
53.67; 53.45 |
0.22 |
-9.45 |
0.25 |
15.47 |
| vRNA |
1HVU |
17!F:30!F |
A:U |
WC [cWW][XX] |
10.7 |
53.55; 52.94 |
0.61 |
-7.63 |
0.65 |
18.61 |
| vRNA |
1HVU |
18!F:29!F |
G:C |
WC [cWW][X!IX] |
10.83 |
53.5; 53.72 |
0.22 |
4.81 |
0.15 |
9.52 |
| vRNA |
1HVU |
19!F:28!F |
U:A |
WC [cWW][XX] |
11.29 |
48.47; 44.63 |
3.83 |
-21.1 |
0.26 |
28.65 |
| vRNA |
1HVU |
22!F:27!F |
G:A |
pfS_1 [---][-] |
8.25 |
129.87; 70.63 |
59.24 |
6.31 |
0.19 |
4.44 |
| vRNA |
1HVU |
7!I:24!I |
U:A |
WC [cWW][XX] |
11.88 |
31.75; 44.65 |
12.9 |
-43.25 |
0.14 |
59.01 |
| vRNA |
1HVU |
8!I:23!I |
U:G |
WC [---][-] |
10.86 |
47.46; 47.35 |
0.1 |
-29.21 |
1.12 |
26.64 |
| vRNA |
1HVU |
9!I:22!I |
C:G |
WC [cWW][X!IX] |
10.95 |
50.51; 49.27 |
1.24 |
-21.71 |
0.31 |
23.13 |
| vRNA |
1HVU |
10!I:21!I |
C:G |
WC [cWW][X!IX] |
10.84 |
51.72; 53.18 |
1.46 |
-14.32 |
0.56 |
12.77 |
| vRNA |
1HVU |
11!I:20!I |
G:C |
WC [cWW][X!IX] |
10.64 |
52.99; 51.89 |
1.11 |
-5.27 |
0.33 |
15.48 |
| vRNA |
1HVU |
14!I:33!I |
U:A |
WC [cWW][XX] |
10.48 |
56.14; 56.11 |
0.03 |
-7.59 |
0.43 |
16.44 |
| vRNA |
1HVU |
15!I:32!I |
U:A |
WC [cWW][XX] |
10.69 |
52.31; 54.2 |
1.9 |
-13.81 |
0.43 |
21.88 |
| vRNA |
1HVU |
16!I:31!I |
C:G |
WC [cWW][X!IX] |
10.75 |
53.67; 53.49 |
0.18 |
-9.41 |
0.25 |
15.49 |
| vRNA |
1HVU |
17!I:30!I |
A:U |
WC [cWW][XX] |
10.7 |
53.56; 52.96 |
0.6 |
-7.66 |
0.65 |
18.6 |
| vRNA |
1HVU |
18!I:29!I |
G:C |
WC [cWW][X!IX] |
10.83 |
53.44; 53.67 |
0.23 |
4.75 |
0.14 |
9.55 |
| vRNA |
1HVU |
19!I:28!I |
U:A |
WC [cWW][XX] |
11.29 |
48.46; 44.6 |
3.86 |
-21.12 |
0.27 |
28.67 |
| vRNA |
1HVU |
22!I:27!I |
G:A |
pfS_1 [---][-] |
8.25 |
129.86; 70.62 |
59.23 |
6.29 |
0.19 |
4.44 |
| vRNA |
1HVU |
7!L:24!L |
U:A |
WC [cWW][XX] |
11.88 |
31.72; 44.64 |
12.93 |
-43.32 |
0.14 |
59.01 |
| vRNA |
1HVU |
8!L:23!L |
U:G |
WC [---][-] |
10.86 |
47.47; 47.35 |
0.13 |
-29.2 |
1.12 |
26.63 |
| vRNA |
1HVU |
9!L:22!L |
C:G |
WC [cWW][X!IX] |
10.95 |
50.48; 49.24 |
1.24 |
-21.72 |
0.31 |
23.09 |
| vRNA |
1HVU |
10!L:21!L |
C:G |
WC [cWW][X!IX] |
10.84 |
51.71; 53.17 |
1.45 |
-14.36 |
0.56 |
12.77 |
| vRNA |
1HVU |
11!L:20!L |
G:C |
WC [cWW][X!IX] |
10.64 |
53.01; 51.9 |
1.1 |
-5.27 |
0.33 |
15.44 |
| vRNA |
1HVU |
14!L:33!L |
U:A |
WC [cWW][XX] |
10.48 |
56.18; 56.1 |
0.08 |
-7.63 |
0.43 |
16.43 |
| vRNA |
1HVU |
15!L:32!L |
U:A |
WC [cWW][XX] |
10.69 |
52.3; 54.19 |
1.89 |
-13.79 |
0.42 |
21.9 |
| vRNA |
1HVU |
16!L:31!L |
C:G |
WC [cWW][X!IX] |
10.75 |
53.66; 53.45 |
0.21 |
-9.42 |
0.25 |
15.47 |
| vRNA |
1HVU |
17!L:30!L |
A:U |
WC [cWW][XX] |
10.7 |
53.52; 52.94 |
0.58 |
-7.63 |
0.65 |
18.62 |
| vRNA |
1HVU |
18!L:29!L |
G:C |
WC [cWW][X!IX] |
10.83 |
53.49; 53.68 |
0.19 |
4.84 |
0.15 |
9.53 |
| vRNA |
1HVU |
19!L:28!L |
U:A |
WC [cWW][XX] |
11.29 |
48.45; 44.63 |
3.82 |
-21.07 |
0.26 |
28.65 |
| vRNA |
1HVU |
22!L:27!L |
G:A |
pfS_1 [---][-] |
8.25 |
129.82; 70.59 |
59.23 |
6.3 |
0.19 |
4.45 |