Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1I9V
BPC Identified: 29
Ambiguities: 0
| tRNA |
1I9V |
1!A:72!A |
G:C |
WC [cWW][XIX] |
10.42 |
54.31; 57.41 |
3.1 |
5.78 |
0.18 |
14.38 |
| tRNA |
1I9V |
2!A:71!A |
C:G |
WC [cWW][XIX] |
11.03 |
49.11; 50.96 |
1.85 |
-11.7 |
0.05 |
16.67 |
| tRNA |
1I9V |
3!A:70!A |
G:C |
WC [cWW][XIX] |
10.93 |
58.38; 46.75 |
11.63 |
-2.07 |
0.15 |
11.09 |
| tRNA |
1I9V |
4!A:69!A |
G:U |
Wb [cWW][XXVIII] |
10.3 |
43.95; 63.48 |
19.54 |
-4.0 |
0.32 |
16.34 |
| tRNA |
1I9V |
5!A:68!A |
A:U |
WC [cWW][XX] |
10.46 |
51.99; 57.51 |
5.52 |
-10.1 |
0.08 |
17.32 |
| tRNA |
1I9V |
6!A:67!A |
U:A |
WC [cWW][XX] |
10.06 |
62.08; 52.91 |
9.17 |
-16.94 |
0.11 |
21.46 |
| tRNA |
1I9V |
7!A:66!A |
U:A |
WC [cWW][XX] |
10.58 |
55.83; 53.44 |
2.39 |
3.3 |
0.2 |
1.52 |
| tRNA |
1I9V |
8!A:14!A |
U:A |
rH_1 [tWH][XXIV] |
9.42 |
29.46; 19.24 |
10.23 |
167.41 |
0.19 |
11.58 |
| tRNA |
1I9V |
9!A:23!A |
A:A |
rS* [tHH][-] |
10.7 |
13.61; 9.41 |
4.2 |
160.02 |
0.02 |
12.03 |
| tRNA |
1I9V |
10!A:45!A |
G:G |
pS_1 [cSH][-] |
8.18 |
41.84; 124.05 |
82.22 |
-1.87 |
0.54 |
27.3 |
| tRNA |
1I9V |
10!A:25!A |
G:C |
WC [cWW][XIX] |
10.71 |
51.83; 56.87 |
5.04 |
-8.66 |
0.07 |
11.43 |
| tRNA |
1I9V |
11!A:24!A |
C:G |
WC [cWW][XIX] |
10.46 |
52.02; 54.29 |
2.27 |
-9.93 |
0.15 |
13.57 |
| tRNA |
1I9V |
12!A:23!A |
U:A |
WC [cWW][XX] |
10.59 |
53.92; 52.91 |
1.01 |
-17.8 |
0.4 |
17.71 |
| tRNA |
1I9V |
13!A:22!A |
C:G |
WC [cWW][XIX] |
10.76 |
53.99; 52.97 |
1.02 |
-4.82 |
0.04 |
5.98 |
| tRNA |
1I9V |
15!A:48!A |
G:C |
rWb [tWW][XXII] |
10.64 |
36.88; 61.08 |
24.19 |
-171.98 |
0.03 |
1.9 |
| tRNA |
1I9V |
19!A:56!A |
G:C |
WC [cWW][XIX] |
10.43 |
61.47; 53.69 |
7.78 |
-27.49 |
1.04 |
37.17 |
| tRNA |
1I9V |
22!A:46!A |
G:G |
rH_1 [tWH][VII] |
10.79 |
35.01; 29.38 |
5.62 |
-171.96 |
0.09 |
8.63 |
| tRNA |
1I9V |
27!A:43!A |
C:G |
WC [cWW][XIX] |
10.54 |
55.49; 57.85 |
2.36 |
-10.02 |
0.17 |
16.12 |
| tRNA |
1I9V |
28!A:42!A |
C:G |
WC [cWW][XIX] |
10.65 |
51.89; 56.46 |
4.57 |
-10.42 |
0.34 |
16.3 |
| tRNA |
1I9V |
29!A:41!A |
A:U |
WC [cWW][XX] |
10.07 |
60.06; 56.53 |
3.52 |
-2.63 |
0.14 |
4.92 |
| tRNA |
1I9V |
30!A:40!A |
G:C |
WC [cWW][XIX] |
10.56 |
56.18; 49.8 |
6.37 |
-13.77 |
0.31 |
39.11 |
| tRNA |
1I9V |
33!A:35!A |
U:A |
S(sb:O2*-N7) [---][-] |
6.6 |
82.92; 47.65 |
35.27 |
-176.89 |
1.49 |
23.61 |
| tRNA |
1I9V |
47!A:50!A |
U:U |
rpS(ps:O1P-O2*) [---][-] |
8.44 |
80.06; 113.2 |
33.14 |
155.09 |
0.45 |
42.07 |
| tRNA |
1I9V |
49!A:65!A |
C:G |
WC [cWW][XIX] |
10.81 |
53.18; 56.25 |
3.07 |
-1.9 |
0.04 |
7.37 |
| tRNA |
1I9V |
50!A:64!A |
U:A |
WC [cWW][XX] |
10.73 |
50.48; 56.28 |
5.8 |
-7.74 |
0.01 |
11.68 |
| tRNA |
1I9V |
51!A:63!A |
G:C |
WC [cWW][XIX] |
10.47 |
52.96; 54.39 |
1.43 |
-8.2 |
0.1 |
20.16 |
| tRNA |
1I9V |
52!A:62!A |
U:A |
WC [cWW][XX] |
10.31 |
55.83; 55.95 |
0.12 |
-11.06 |
0.2 |
14.83 |
| tRNA |
1I9V |
53!A:61!A |
G:C |
WC [cWW][XIX] |
10.55 |
58.02; 56.46 |
1.56 |
-7.1 |
0.27 |
6.64 |
| tRNA |
1I9V |
54!A:58!A |
U:A |
rH_1 [tWH][XXIV] |
9.71 |
27.11; 22.98 |
4.13 |
167.76 |
0.34 |
7.14 |