Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1IK5
BPC Identified: 15
Ambiguities: 0
| dsRNA |
1IK5 |
1!A:28!B |
G:C |
WC [cWW][XIX] |
10.76 |
51.85; 56.58 |
4.73 |
-1.15 |
0.08 |
3.51 |
| dsRNA |
1IK5 |
2!A:27!B |
G:C |
WC [cWW][XIX] |
10.57 |
55.67; 55.88 |
0.21 |
-9.87 |
0.16 |
14.46 |
| dsRNA |
1IK5 |
3!A:26!B |
U:A |
WC [cWW][XX] |
10.28 |
60.33; 57.54 |
2.78 |
-11.44 |
0.07 |
10.61 |
| dsRNA |
1IK5 |
4!A:25!B |
A:U |
WC [cWW][XX] |
10.31 |
58.92; 57.06 |
1.86 |
-13.82 |
0.22 |
14.47 |
| dsRNA |
1IK5 |
4!A:20!B |
A:U |
rH_1 [tWH][XXIV] |
9.65 |
17.55; 30.97 |
13.42 |
-161.21 |
0.03 |
4.99 |
| dsRNA |
1IK5 |
5!A:24!B |
U:G |
Wb [cWW][XXVIII] |
10.42 |
70.09; 40.25 |
29.83 |
-9.09 |
0.38 |
12.54 |
| dsRNA |
1IK5 |
6!A:18!B |
U:A |
rH_1 [tWH][XXIV] |
9.72 |
32.1; 16.5 |
15.6 |
-167.98 |
0.45 |
13.26 |
| dsRNA |
1IK5 |
8!A:23!B |
C:G |
WC [cWW][XIX] |
10.42 |
56.85; 58.76 |
1.91 |
5.44 |
0.11 |
1.68 |
| dsRNA |
1IK5 |
9!A:22!B |
G:U |
WC [---][-] |
10.41 |
56.38; 58.8 |
2.42 |
6.12 |
0.13 |
4.56 |
| dsRNA |
1IK5 |
10!A:19!B |
G:U |
Wb [cWW][XXVIII] |
10.43 |
42.29; 70.31 |
28.02 |
-8.08 |
0.22 |
9.58 |
| dsRNA |
1IK5 |
11!A:18!B |
U:A |
WC [cWW][XX] |
10.3 |
57.14; 60.43 |
3.29 |
-9.03 |
0.07 |
11.98 |
| dsRNA |
1IK5 |
12!A:17!B |
A:U |
WC [cWW][XX] |
10.35 |
58.27; 60.24 |
1.97 |
-11.45 |
0.15 |
12.07 |
| dsRNA |
1IK5 |
13!A:16!B |
C:G |
WC [cWW][XIX] |
10.56 |
56.51; 55.81 |
0.69 |
-5.89 |
0.45 |
18.85 |
| dsRNA |
1IK5 |
14!A:15!B |
C:G |
WC [cWW][XIX] |
10.75 |
54.83; 49.78 |
5.06 |
-2.39 |
0.28 |
10.4 |
| dsRNA |
1IK5 |
19!B:22!B |
U:U |
H_3 [---][-] |
7.92 |
99.93; 38.32 |
61.62 |
11.47 |
2.3 |
11.07 |