Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1J1U
BPC Identified: 33
Ambiguities: 0
| tRNA |
1J1U |
501!B:573!B |
C:G |
WC [cWW][XIX] |
10.33 |
59.3; 54.88 |
4.42 |
-20.11 |
0.24 |
26.77 |
| tRNA |
1J1U |
502!B:572!B |
C:G |
WC [cWW][XIX] |
10.57 |
54.76; 53.54 |
1.22 |
-15.09 |
0.09 |
16.87 |
| tRNA |
1J1U |
503!B:571!B |
G:C |
WC [cWW][XIX] |
10.61 |
56.1; 54.99 |
1.11 |
-13.64 |
0.36 |
14.19 |
| tRNA |
1J1U |
504!B:570!B |
G:C |
WC [cWW][XIX] |
10.58 |
55.98; 55.34 |
0.63 |
-16.76 |
0.06 |
15.75 |
| tRNA |
1J1U |
505!B:569!B |
C:G |
WC [cWW][XIX] |
10.49 |
57.61; 55.17 |
2.44 |
-15.17 |
0.04 |
14.83 |
| tRNA |
1J1U |
506!B:568!B |
G:C |
WC [cWW][XIX] |
10.6 |
56.03; 54.63 |
1.4 |
-14.41 |
0.22 |
19.25 |
| tRNA |
1J1U |
507!B:567!B |
G:C |
WC [cWW][XIX] |
10.67 |
52.52; 54.07 |
1.55 |
-2.21 |
0.17 |
9.75 |
| tRNA |
1J1U |
508!B:522!B |
U:A |
fS(sb:O2*-N1) [tSW][-] |
7.82 |
98.03; 64.4 |
33.63 |
163.28 |
0.12 |
15.22 |
| tRNA |
1J1U |
508!B:514!B |
U:A |
rH_1 [tWH][XXIV] |
9.45 |
31.46; 17.09 |
14.37 |
170.59 |
0.13 |
7.58 |
| tRNA |
1J1U |
509!B:524!B |
A:A |
rS* [tHH][-] |
10.93 |
13.38; 10.36 |
3.01 |
155.5 |
0.01 |
7.98 |
| tRNA |
1J1U |
510!B:526!B |
G:C |
WC [cWW][XIX] |
10.64 |
50.72; 57.59 |
6.87 |
-3.76 |
0.27 |
11.04 |
| tRNA |
1J1U |
511!B:525!B |
U:A |
WC [cWW][XX] |
10.2 |
57.23; 54.5 |
2.73 |
-14.88 |
0.51 |
24.36 |
| tRNA |
1J1U |
512!B:524!B |
U:A |
WC [cWW][XX] |
10.64 |
51.06; 52.07 |
1.01 |
-6.57 |
0.13 |
9.76 |
| tRNA |
1J1U |
513!B:523!B |
C:G |
WC [cWW][XIX] |
10.38 |
57.53; 56.67 |
0.86 |
-6.43 |
0.1 |
3.42 |
| tRNA |
1J1U |
514!B:522!B |
A:A |
pfS [cSW][-] |
9.59 |
31.49; 127.38 |
95.89 |
-13.58 |
0.34 |
8.39 |
| tRNA |
1J1U |
515!B:549!B |
G:C |
rWb [tWW][XXII] |
10.42 |
35.94; 62.0 |
26.06 |
178.85 |
0.28 |
9.15 |
| tRNA |
1J1U |
519!B:556!B |
G:U |
fS_1 [tSW][-] |
8.82 |
26.44; 105.78 |
79.34 |
-147.71 |
0.29 |
22.68 |
| tRNA |
1J1U |
520!B:557!B |
G:C |
WC [cWW][XIX] |
10.6 |
61.59; 56.22 |
5.37 |
-23.22 |
1.25 |
34.85 |
| tRNA |
1J1U |
523!B:547!B |
G:G |
rH_1 [tWH][VII] |
11.55 |
27.28; 34.35 |
7.07 |
166.68 |
0.19 |
10.64 |
| tRNA |
1J1U |
527!B:545!B |
G:A |
rWb* [---][-] |
12.67 |
41.14; 46.56 |
5.42 |
-5.22 |
0.44 |
22.13 |
| tRNA |
1J1U |
528!B:544!B |
G:C |
WC [cWW][XIX] |
10.7 |
48.88; 51.73 |
2.84 |
-16.42 |
0.08 |
15.49 |
| tRNA |
1J1U |
529!B:543!B |
C:G |
WC [cWW][XIX] |
10.59 |
52.23; 60.54 |
8.3 |
-18.94 |
0.41 |
19.27 |
| tRNA |
1J1U |
530!B:542!B |
G:C |
WC [cWW][XIX] |
10.34 |
46.19; 57.79 |
11.61 |
-19.51 |
0.3 |
17.0 |
| tRNA |
1J1U |
531!B:541!B |
G:C |
WC [cWW][XIX] |
11.38 |
48.88; 39.19 |
9.69 |
-14.66 |
0.17 |
15.9 |
| tRNA |
1J1U |
532!B:540!B |
A:U |
WC [cWW][XX] |
10.02 |
65.59; 52.63 |
12.96 |
-18.91 |
0.31 |
25.73 |
| tRNA |
1J1U |
533!B:539!B |
C:A |
sWb [---][-] |
11.23 |
69.73; 26.02 |
43.72 |
-24.1 |
0.59 |
17.16 |
| tRNA |
1J1U |
550!B:566!B |
G:C |
WC [cWW][XIX] |
10.71 |
53.93; 54.59 |
0.66 |
-8.23 |
0.31 |
13.68 |
| tRNA |
1J1U |
551!B:565!B |
C:G |
WC [cWW][XIX] |
10.52 |
55.66; 53.68 |
1.98 |
-13.83 |
0.0 |
17.42 |
| tRNA |
1J1U |
552!B:564!B |
U:G |
Wb [cWW][XXVIII] |
10.35 |
68.11; 42.67 |
25.44 |
-11.93 |
0.14 |
12.42 |
| tRNA |
1J1U |
553!B:563!B |
G:C |
WC [cWW][XIX] |
10.57 |
53.85; 54.45 |
0.6 |
-13.2 |
0.15 |
13.34 |
| tRNA |
1J1U |
554!B:562!B |
G:C |
WC [cWW][XIX] |
10.67 |
53.88; 55.51 |
1.63 |
-13.08 |
0.31 |
13.85 |
| tRNA |
1J1U |
555!B:559!B |
U:A |
rH_1 [tWH][XXIV] |
9.57 |
30.31; 19.13 |
11.19 |
163.06 |
0.45 |
10.32 |
| tRNA |
1J1U |
556!B:558!B |
U:A |
S(sb:O2*-N7) [---][-] |
6.63 |
79.37; 41.63 |
37.74 |
-164.67 |
1.4 |
30.89 |