Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1J2B BPC Identified: 39 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
tRNA 1J2B 901!C:973!C G:C WC [cWW][XIX] 11.1 48.25; 51.97 3.72 7.81 1.13 4.5
tRNA 1J2B 902!C:972!C G:C WC [cWW][XIX] 10.22 52.51; 62.17 9.65 -9.16 0.65 28.56
tRNA 1J2B 903!C:971!C G:C WC [cWW][XIX] 10.35 52.9; 64.1 11.2 -2.68 0.12 6.44
tRNA 1J2B 904!C:970!C C:G WC [cWW][XIX] 10.81 61.29; 50.71 10.58 9.44 0.07 19.77
tRNA 1J2B 905!C:969!C C:G Wb [---][-] 10.54 66.52; 51.16 15.36 1.56 0.03 2.84
tRNA 1J2B 906!C:968!C C:G Wb [---][-] 10.28 69.78; 52.07 17.7 -18.0 0.51 32.19
tRNA 1J2B 907!C:967!C G:C WC [cWW][XIX] 11.11 58.91; 53.34 5.56 -9.15 0.13 5.69
tRNA 1J2B 924!C:949!C G:C WC [cWW][XIX] 10.57 54.56; 54.57 0.01 -26.41 0.24 25.03
tRNA 1J2B 925!C:948!C A:U WC [cWW][XX] 10.24 58.16; 64.98 6.83 -22.66 0.56 32.5
tRNA 1J2B 926!C:947!C C:G WC [cWW][XIX] 10.48 53.63; 50.14 3.49 -15.1 0.37 35.87
tRNA 1J2B 929!C:943!C C:G WC [cWW][XIX] 10.74 55.55; 56.19 0.63 -2.45 0.1 17.0
tRNA 1J2B 930!C:942!C G:C WC [cWW][XIX] 10.39 48.67; 61.0 12.34 -4.19 0.61 17.51
tRNA 1J2B 931!C:941!C C:G WC [cWW][XIX] 10.63 54.17; 59.59 5.43 -4.64 0.25 32.71
tRNA 1J2B 932!C:940!C C:G WC [cWW][XIX] 10.55 62.11; 51.41 10.69 -1.16 0.06 4.98
tRNA 1J2B 950!C:966!C C:G WC [cWW][XIX] 10.75 50.45; 59.75 9.31 -8.55 0.19 30.16
tRNA 1J2B 951!C:965!C G:C WC [cWW][XIX] 10.12 56.01; 64.37 8.36 -0.42 0.15 4.79
tRNA 1J2B 952!C:964!C G:C WC [cWW][XIX] 10.68 56.96; 56.26 0.7 -1.9 0.41 19.74
tRNA 1J2B 953!C:963!C G:C Wb* [---][-] 11.5 58.38; 35.75 22.63 5.75 0.03 15.78
tRNA 1J2B 954!C:962!C G:C Wb [---][-] 10.9 44.96; 61.28 16.32 0.89 0.17 1.98
tRNA 1J2B 955!C:959!C U:A rH_1 [tWH][XXIV] 9.95 38.3; 13.75 24.55 165.07 1.23 38.52
tRNA 1J2B 901!D:973!D G:C WC [cWW][XIX] 10.31 62.4; 62.53 0.12 0.81 0.47 12.36
tRNA 1J2B 902!D:972!D G:C Wb [---][-] 10.64 44.83; 63.65 18.83 -6.93 0.01 20.01
tRNA 1J2B 903!D:971!D G:C WC [cWW][XIX] 11.04 53.19; 54.99 1.81 7.57 0.13 14.26
tRNA 1J2B 904!D:970!D C:G WC [cWW][XIX] 11.11 53.69; 55.71 2.03 12.74 0.11 11.44
tRNA 1J2B 905!D:969!D C:G WC [cWW][XIX] 10.65 64.11; 51.84 12.27 -2.23 0.13 19.66
tRNA 1J2B 906!D:968!D C:G WC [cWW][XIX] 10.32 57.71; 56.95 0.75 -17.76 0.86 14.14
tRNA 1J2B 907!D:967!D G:C WC [cWW][XIX] 10.77 49.92; 58.98 9.06 -15.01 0.04 20.11
tRNA 1J2B 924!D:949!D G:C Wb [---][-] 10.24 48.02; 64.11 16.09 -10.69 1.06 30.69
tRNA 1J2B 926!D:947!D C:G Wb [---][-] 10.31 59.21; 42.42 16.79 -20.75 1.1 32.99
tRNA 1J2B 929!D:943!D C:G WC [cWW][XIX] 11.06 56.35; 62.0 5.65 7.2 0.13 4.1
tRNA 1J2B 930!D:942!D G:C WC [cWW][XIX] 10.42 50.59; 57.66 7.07 -4.22 0.74 19.49
tRNA 1J2B 931!D:941!D C:G Wb* [---][-] 10.39 56.72; 72.68 15.96 -11.31 0.09 18.15
tRNA 1J2B 932!D:940!D C:G WC [cWW][XIX] 10.68 50.08; 55.9 5.82 -5.24 0.95 20.83
tRNA 1J2B 933!D:939!D C:A WC [---][-] 9.89 70.4; 56.62 13.78 -3.1 1.22 27.25
tRNA 1J2B 950!D:966!D C:G WC [cWW][XIX] 10.89 51.08; 58.49 7.41 0.09 0.39 22.7
tRNA 1J2B 951!D:965!D G:C WC [cWW][XIX] 11.32 58.54; 56.72 1.82 3.42 0.91 14.34
tRNA 1J2B 952!D:964!D G:C WC [cWW][XIX] 11.15 57.49; 53.27 4.22 -0.99 0.94 17.45
tRNA 1J2B 954!D:962!D G:C Wb [---][-] 10.98 38.87; 54.52 15.65 -2.96 0.41 9.41
tRNA 1J2B 955!D:959!D U:A rH_1 [tWH][XXIV] 10.73 25.76; 12.27 13.49 -160.15 0.03 11.84