Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1J6S BPC Identified: 84 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Misc_RNA 1J6S 1a!A:2c!A U:G fS*_1 [tWS][-] 8.3 36.48; 102.41 65.93 150.04 0.41 17.61
Misc_RNA 1J6S 2a!A:2d!A G:G H_1 [cWH][VI] 11.54 65.24; 26.67 38.56 10.83 0.21 5.06
Misc_RNA 1J6S 2a!A:1d!A G:U fS*_1 [tWS][-] 8.3 102.41; 36.48 65.93 150.04 0.41 17.61
Misc_RNA 1J6S 2a!A:2c!A G:G H_1 [cWH][VI] 11.54 26.67; 65.24 38.56 10.83 0.21 5.06
Misc_RNA 1J6S 3a!A:3d!A A:A H_2 [---][-] 11.07 39.41; 52.96 13.54 -3.85 0.2 8.66
Misc_RNA 1J6S 3a!A:3c!A A:A H_2 [---][-] 11.07 52.96; 39.41 13.54 -3.85 0.2 8.66
Misc_RNA 1J6S 4a!A:4d!A G:G H_1 [cWH][VI] 11.67 62.19; 28.47 33.71 5.49 0.09 2.64
Misc_RNA 1J6S 4a!A:4c!A G:G H_1 [cWH][VI] 11.67 28.47; 62.19 33.71 5.49 0.09 2.64
Misc_RNA 1J6S 5a!A:5d!A G:G H_1 [cWH][VI] 11.44 62.28; 28.6 33.68 -6.3 0.34 11.8
Misc_RNA 1J6S 5a!A:5c!A G:G H_1 [cWH][VI] 11.44 28.6; 62.28 33.68 -6.3 0.34 11.8
Misc_RNA 1J6S 6a!A:6d!A U:U H_1 [cWH][-] 9.07 69.42; 42.8 26.62 -20.44 2.35 50.35
Misc_RNA 1J6S 6a!A:6c!A U:U H_1 [cWH][-] 9.07 42.8; 69.42 26.62 -20.44 2.35 50.35
Misc_RNA 1J6S 1b!A:2d!A U:G fS*_1 [tWS][-] 8.3 36.48; 102.41 65.93 150.04 0.41 17.61
Misc_RNA 1J6S 2b!A:2d!A G:G H_1 [cWH][VI] 11.54 26.67; 65.24 38.56 10.83 0.21 5.06
Misc_RNA 1J6S 2b!A:2c!A G:G H_1 [cWH][VI] 11.54 65.24; 26.67 38.56 10.83 0.21 5.06
Misc_RNA 1J6S 2b!A:1c!A G:U fS*_1 [tWS][-] 8.3 102.41; 36.48 65.93 150.04 0.41 17.61
Misc_RNA 1J6S 3b!A:3d!A A:A H_2 [---][-] 11.07 52.96; 39.41 13.54 -3.85 0.2 8.66
Misc_RNA 1J6S 3b!A:3c!A A:A H_2 [---][-] 11.07 39.41; 52.96 13.54 -3.85 0.2 8.66
Misc_RNA 1J6S 4b!A:4d!A G:G H_1 [cWH][VI] 11.67 28.47; 62.19 33.71 5.49 0.09 2.64
Misc_RNA 1J6S 4b!A:4c!A G:G H_1 [cWH][VI] 11.67 62.19; 28.47 33.71 5.49 0.09 2.64
Misc_RNA 1J6S 5b!A:5d!A G:G H_1 [cWH][VI] 11.44 28.6; 62.28 33.68 -6.3 0.34 11.8
Misc_RNA 1J6S 5b!A:5c!A G:G H_1 [cWH][VI] 11.44 62.28; 28.6 33.68 -6.3 0.34 11.8
Misc_RNA 1J6S 6b!A:6d!A U:U H_1 [cWH][-] 9.07 42.8; 69.42 26.62 -20.44 2.35 50.35
Misc_RNA 1J6S 6b!A:6c!A U:U H_1 [cWH][-] 9.07 69.42; 42.8 26.62 -20.44 2.35 50.35
Misc_RNA 1J6S 8a!B:8d!B G:G H_1 [cWH][VI] 11.47 64.1; 26.98 37.11 7.83 0.09 8.02
Misc_RNA 1J6S 8a!B:8c!B G:G H_1 [cWH][VI] 11.47 26.98; 64.1 37.11 7.83 0.09 8.02
Misc_RNA 1J6S 9a!B:9d!B A:A H_2 [---][-] 11.11 38.84; 52.37 13.53 -2.78 0.21 5.74
Misc_RNA 1J6S 9a!B:9c!B A:A H_2 [---][-] 11.11 52.37; 38.84 13.53 -2.78 0.21 5.74
Misc_RNA 1J6S 10a!B:10d!B G:G H_1 [cWH][VI] 11.54 63.13; 28.06 35.08 7.67 0.02 1.51
Misc_RNA 1J6S 10a!B:10c!B G:G H_1 [cWH][VI] 11.54 28.06; 63.13 35.08 7.67 0.02 1.51
Misc_RNA 1J6S 11a!B:11d!B G:G H_1 [cWH][VI] 11.42 63.5; 29.27 34.23 -11.22 0.6 15.18
Misc_RNA 1J6S 11a!B:11c!B G:G H_1 [cWH][VI] 11.42 29.27; 63.5 34.23 -11.22 0.6 15.18
Misc_RNA 1J6S 12a!B:12d!B U:U H_1 [cWH][-] 9.65 40.74; 53.94 13.2 5.18 1.54 36.81
Misc_RNA 1J6S 12a!B:12c!B U:U H_1 [cWH][-] 9.65 53.94; 40.74 13.2 5.18 1.54 36.81
Misc_RNA 1J6S 8b!B:8d!B G:G H_1 [cWH][VI] 11.47 26.98; 64.1 37.11 7.83 0.09 8.02
Misc_RNA 1J6S 8b!B:8c!B G:G H_1 [cWH][VI] 11.47 64.1; 26.98 37.11 7.83 0.09 8.02
Misc_RNA 1J6S 9b!B:9d!B A:A H_2 [---][-] 11.11 52.37; 38.84 13.53 -2.78 0.21 5.74
Misc_RNA 1J6S 9b!B:9c!B A:A H_2 [---][-] 11.11 38.84; 52.37 13.53 -2.78 0.21 5.74
Misc_RNA 1J6S 10b!B:10d!B G:G H_1 [cWH][VI] 11.54 28.06; 63.13 35.08 7.67 0.02 1.51
Misc_RNA 1J6S 10b!B:10c!B G:G H_1 [cWH][VI] 11.54 63.13; 28.06 35.08 7.67 0.02 1.51
Misc_RNA 1J6S 11b!B:11d!B G:G H_1 [cWH][VI] 11.42 29.27; 63.5 34.23 -11.22 0.6 15.18
Misc_RNA 1J6S 11b!B:11c!B G:G H_1 [cWH][VI] 11.42 63.5; 29.27 34.23 -11.22 0.6 15.18
Misc_RNA 1J6S 12b!B:12d!B U:U H_1 [cWH][-] 9.65 53.94; 40.74 13.2 5.18 1.54 36.81
Misc_RNA 1J6S 12b!B:12c!B U:U H_1 [cWH][-] 9.65 40.74; 53.94 13.2 5.18 1.54 36.81
Misc_RNA 1J6S 13a!C:14d!C U:G fS*_1 [tWS][-] 8.24 36.91; 103.68 66.77 146.36 0.14 20.64
Misc_RNA 1J6S 14a!C:14d!C G:G H_1 [cWH][VI] 11.53 25.6; 65.76 40.16 9.67 0.15 7.23
Misc_RNA 1J6S 14a!C:14c!C G:G H_1 [cWH][VI] 11.53 65.76; 25.6 40.16 9.67 0.15 7.23
Misc_RNA 1J6S 14a!C:13c!C G:U fS*_1 [tWS][-] 8.24 103.68; 36.91 66.77 146.36 0.14 20.64
Misc_RNA 1J6S 15a!C:15d!C A:A H_2 [---][-] 10.97 52.25; 39.91 12.34 -3.36 0.14 8.5
Misc_RNA 1J6S 15a!C:15c!C A:A H_2 [---][-] 10.97 39.91; 52.25 12.34 -3.36 0.14 8.5
Misc_RNA 1J6S 16a!C:16d!C G:G H_1 [cWH][VI] 11.54 27.74; 63.89 36.15 9.29 0.35 7.35
Misc_RNA 1J6S 16a!C:16c!C G:G H_1 [cWH][VI] 11.54 63.89; 27.74 36.15 9.29 0.35 7.35
Misc_RNA 1J6S 17a!C:17d!C G:G H_1 [cWH][VI] 11.51 27.07; 64.73 37.66 -10.22 0.73 15.82
Misc_RNA 1J6S 17a!C:17c!C G:G H_1 [cWH][VI] 11.51 64.73; 27.07 37.66 -10.22 0.73 15.82
Misc_RNA 1J6S 18a!C:18d!C U:U H_1 [cWH][-] 9.74 66.81; 33.44 33.37 19.59 1.48 31.15
Misc_RNA 1J6S 18a!C:18c!C U:U H_1 [cWH][-] 9.74 33.44; 66.81 33.37 19.59 1.48 31.15
Misc_RNA 1J6S 13b!C:14c!C U:G fS*_1 [tWS][-] 8.24 36.91; 103.68 66.77 146.36 0.14 20.64
Misc_RNA 1J6S 14b!C:14d!C G:G H_1 [cWH][VI] 11.53 65.76; 25.6 40.16 9.67 0.15 7.23
Misc_RNA 1J6S 14b!C:13d!C G:U fS*_1 [tWS][-] 8.24 103.68; 36.91 66.77 146.36 0.14 20.64
Misc_RNA 1J6S 14b!C:14c!C G:G H_1 [cWH][VI] 11.53 25.6; 65.76 40.16 9.67 0.15 7.23
Misc_RNA 1J6S 15b!C:15d!C A:A H_2 [---][-] 10.97 39.91; 52.25 12.34 -3.36 0.14 8.5
Misc_RNA 1J6S 15b!C:15c!C A:A H_2 [---][-] 10.97 52.25; 39.91 12.34 -3.36 0.14 8.5
Misc_RNA 1J6S 16b!C:16d!C G:G H_1 [cWH][VI] 11.54 63.89; 27.74 36.15 9.29 0.35 7.35
Misc_RNA 1J6S 16b!C:16c!C G:G H_1 [cWH][VI] 11.54 27.74; 63.89 36.15 9.29 0.35 7.35
Misc_RNA 1J6S 17b!C:17d!C G:G H_1 [cWH][VI] 11.51 64.73; 27.07 37.66 -10.22 0.73 15.82
Misc_RNA 1J6S 17b!C:17c!C G:G H_1 [cWH][VI] 11.51 27.07; 64.73 37.66 -10.22 0.73 15.82
Misc_RNA 1J6S 18b!C:18d!C U:U H_1 [cWH][-] 9.74 33.44; 66.81 33.37 19.59 1.48 31.15
Misc_RNA 1J6S 18b!C:18c!C U:U H_1 [cWH][-] 9.74 66.81; 33.44 33.37 19.59 1.48 31.15
Misc_RNA 1J6S 20a!D:20d!D G:G H_1 [cWH][VI] 11.41 64.55; 26.78 37.77 8.86 0.08 6.86
Misc_RNA 1J6S 20a!D:20c!D G:G H_1 [cWH][VI] 11.41 26.78; 64.55 37.77 8.86 0.08 6.86
Misc_RNA 1J6S 21a!D:21d!D A:A H_2 [---][-] 11.07 36.62; 54.15 17.53 -2.91 0.02 4.37
Misc_RNA 1J6S 21a!D:21c!D A:A H_2 [---][-] 11.07 54.15; 36.62 17.53 -2.91 0.02 4.37
Misc_RNA 1J6S 22a!D:22d!D G:G H_1 [cWH][VI] 11.54 62.69; 28.55 34.14 7.6 0.09 6.36
Misc_RNA 1J6S 22a!D:22c!D G:G H_1 [cWH][VI] 11.54 28.55; 62.69 34.14 7.6 0.09 6.36
Misc_RNA 1J6S 23a!D:23d!D G:G H_1 [cWH][VI] 11.46 63.32; 29.16 34.16 -10.61 0.72 16.53
Misc_RNA 1J6S 23a!D:23c!D G:G H_1 [cWH][VI] 11.46 29.16; 63.32 34.16 -10.61 0.72 16.53
Misc_RNA 1J6S 20b!D:20d!D G:G H_1 [cWH][VI] 11.41 26.78; 64.55 37.77 8.86 0.08 6.86
Misc_RNA 1J6S 20b!D:20c!D G:G H_1 [cWH][VI] 11.41 64.55; 26.78 37.77 8.86 0.08 6.86
Misc_RNA 1J6S 21b!D:21d!D A:A H_2 [---][-] 11.07 54.15; 36.62 17.53 -2.91 0.02 4.37
Misc_RNA 1J6S 21b!D:21c!D A:A H_2 [---][-] 11.07 36.62; 54.15 17.53 -2.91 0.02 4.37
Misc_RNA 1J6S 22b!D:22d!D G:G H_1 [cWH][VI] 11.54 28.55; 62.69 34.14 7.6 0.09 6.36
Misc_RNA 1J6S 22b!D:22c!D G:G H_1 [cWH][VI] 11.54 62.69; 28.55 34.14 7.6 0.09 6.36
Misc_RNA 1J6S 23b!D:23d!D G:G H_1 [cWH][VI] 11.46 29.16; 63.32 34.16 -10.61 0.72 16.53
Misc_RNA 1J6S 23b!D:23c!D G:G H_1 [cWH][VI] 11.46 63.32; 29.16 34.16 -10.61 0.72 16.53