Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1J8G BPC Identified: 96 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Misc_RNA 1J8G 1!A:23!A U:G rpS [cSS][-] 4.17 137.43; 108.74 28.69 101.02 0.51 21.76
Misc_RNA 1J8G 2!A:2!D G:G H_1 [cWH][VI] 11.33 31.18; 64.95 33.77 15.94 0.33 11.2
Misc_RNA 1J8G 2!A:2!C G:G H_1 [cWH][VI] 11.33 64.95; 31.18 33.77 15.94 0.33 11.2
Misc_RNA 1J8G 3!A:3!D G:G H_1 [cWH][VI] 11.41 32.02; 63.23 31.22 -13.59 0.55 12.87
Misc_RNA 1J8G 3!A:3!C G:G H_1 [cWH][VI] 11.41 63.23; 32.02 31.22 -13.59 0.55 12.87
Misc_RNA 1J8G 3!A:21!A G:U rpS [cSS][-] 4.24 106.79; 136.81 30.02 104.31 0.54 23.39
Misc_RNA 1J8G 4!A:4!D G:G H_1 [cWH][VI] 11.47 28.12; 64.09 35.96 10.68 0.33 7.11
Misc_RNA 1J8G 4!A:4!C G:G H_1 [cWH][VI] 11.47 64.09; 28.12 35.96 10.68 0.33 7.11
Misc_RNA 1J8G 5!A:5!D G:G H_1 [cWH][VI] 11.38 29.0; 62.46 33.46 -8.04 0.67 14.89
Misc_RNA 1J8G 5!A:5!C G:G H_1 [cWH][VI] 11.38 62.46; 29.0 33.46 -8.04 0.67 14.89
Misc_RNA 1J8G 6!A:6!D U:U H_1 [cWH][-] 9.65 63.83; 34.75 29.08 15.59 1.23 30.24
Misc_RNA 1J8G 6!A:6!C U:U H_1 [cWH][-] 9.65 34.75; 63.83 29.08 15.59 1.23 30.24
Misc_RNA 1J8G 11!A:33!A U:G rpS [cSS][-] 4.12 136.39; 107.19 29.21 103.91 0.42 23.63
Misc_RNA 1J8G 12!A:12!D G:G H_1 [cWH][VI] 11.32 30.76; 65.38 34.63 16.41 0.29 11.49
Misc_RNA 1J8G 12!A:12!C G:G H_1 [cWH][VI] 11.32 65.38; 30.76 34.63 16.41 0.29 11.49
Misc_RNA 1J8G 13!A:13!D G:G H_1 [cWH][VI] 11.41 33.03; 62.88 29.85 -13.62 0.58 13.1
Misc_RNA 1J8G 13!A:13!C G:G H_1 [cWH][VI] 11.41 62.88; 33.03 29.85 -13.62 0.58 13.1
Misc_RNA 1J8G 13!A:31!A G:U rpS [cSS][-] 4.16 105.08; 136.07 30.99 107.6 0.35 23.99
Misc_RNA 1J8G 14!A:14!D G:G H_1 [cWH][VI] 11.5 27.6; 63.74 36.14 8.44 0.24 4.66
Misc_RNA 1J8G 14!A:14!C G:G H_1 [cWH][VI] 11.5 63.74; 27.6 36.14 8.44 0.24 4.66
Misc_RNA 1J8G 15!A:15!D G:G H_1 [cWH][VI] 11.37 26.48; 63.62 37.14 -2.39 0.45 11.86
Misc_RNA 1J8G 15!A:15!C G:G H_1 [cWH][VI] 11.37 63.62; 26.48 37.14 -2.39 0.45 11.86
Misc_RNA 1J8G 16!A:16!D U:U H_1 [cWH][-] 9.18 42.79; 68.4 25.62 -19.3 2.32 49.06
Misc_RNA 1J8G 16!A:16!C U:U H_1 [cWH][-] 9.18 68.4; 42.79 25.62 -19.3 2.32 49.06
Misc_RNA 1J8G 22!A:22!D G:G H_1 [cWH][VI] 11.37 65.09; 30.75 34.34 15.9 0.32 11.28
Misc_RNA 1J8G 22!A:22!C G:G H_1 [cWH][VI] 11.37 30.75; 65.09 34.34 15.9 0.32 11.28
Misc_RNA 1J8G 23!A:23!D G:G H_1 [cWH][VI] 11.43 63.5; 31.07 32.43 -13.32 0.47 11.51
Misc_RNA 1J8G 23!A:23!C G:G H_1 [cWH][VI] 11.43 31.07; 63.5 32.43 -13.32 0.47 11.51
Misc_RNA 1J8G 24!A:24!D G:G H_1 [cWH][VI] 11.4 64.49; 28.13 36.36 11.73 0.39 9.0
Misc_RNA 1J8G 24!A:24!C G:G H_1 [cWH][VI] 11.4 28.13; 64.49 36.36 11.73 0.39 9.0
Misc_RNA 1J8G 25!A:25!D G:G H_1 [cWH][VI] 11.46 63.66; 28.77 34.88 -10.78 0.86 17.31
Misc_RNA 1J8G 25!A:25!C G:G H_1 [cWH][VI] 11.46 28.77; 63.66 34.88 -10.78 0.86 17.31
Misc_RNA 1J8G 26!A:26!D U:U H_1 [cWH][-] 9.84 30.93; 63.91 32.97 13.94 0.94 21.14
Misc_RNA 1J8G 26!A:26!C U:U H_1 [cWH][-] 9.84 63.91; 30.93 32.97 13.94 0.94 21.14
Misc_RNA 1J8G 32!A:32!D G:G H_1 [cWH][VI] 11.33 64.87; 31.0 33.88 15.69 0.3 11.43
Misc_RNA 1J8G 32!A:32!C G:G H_1 [cWH][VI] 11.33 31.0; 64.87 33.88 15.69 0.3 11.43
Misc_RNA 1J8G 33!A:33!D G:G H_1 [cWH][VI] 11.42 63.43; 31.73 31.7 -13.71 0.5 12.11
Misc_RNA 1J8G 33!A:33!C G:G H_1 [cWH][VI] 11.42 31.73; 63.43 31.7 -13.71 0.5 12.11
Misc_RNA 1J8G 34!A:34!D G:G H_1 [cWH][VI] 11.46 63.76; 28.06 35.7 9.66 0.25 5.91
Misc_RNA 1J8G 34!A:34!C G:G H_1 [cWH][VI] 11.46 28.06; 63.76 35.7 9.66 0.25 5.91
Misc_RNA 1J8G 35!A:35!D G:G H_1 [cWH][VI] 11.3 64.42; 29.24 35.18 -13.21 0.62 16.34
Misc_RNA 1J8G 35!A:35!C G:G H_1 [cWH][VI] 11.3 29.24; 64.42 35.18 -13.21 0.62 16.34
Misc_RNA 1J8G 36!A:36!D U:U H_3 [---][-] 9.28 15.44; 79.3 63.86 34.6 1.1 25.38
Misc_RNA 1J8G 36!A:36!C U:U H_3 [---][-] 9.28 79.3; 15.44 63.86 34.6 1.1 25.38
Misc_RNA 1J8G 1!B:23!B U:G rpS [cSS][-] 4.17 137.43; 108.74 28.69 101.02 0.51 21.76
Misc_RNA 1J8G 2!B:2!D G:G H_1 [cWH][VI] 11.33 64.95; 31.18 33.77 15.94 0.33 11.2
Misc_RNA 1J8G 2!B:2!C G:G H_1 [cWH][VI] 11.33 31.18; 64.95 33.77 15.94 0.33 11.2
Misc_RNA 1J8G 3!B:3!D G:G H_1 [cWH][VI] 11.41 63.23; 32.02 31.22 -13.59 0.55 12.87
Misc_RNA 1J8G 3!B:3!C G:G H_1 [cWH][VI] 11.41 32.02; 63.23 31.22 -13.59 0.55 12.87
Misc_RNA 1J8G 3!B:21!B G:U rpS [cSS][-] 4.24 106.79; 136.81 30.02 104.31 0.54 23.39
Misc_RNA 1J8G 4!B:4!D G:G H_1 [cWH][VI] 11.47 64.09; 28.12 35.96 10.68 0.33 7.11
Misc_RNA 1J8G 4!B:4!C G:G H_1 [cWH][VI] 11.47 28.12; 64.09 35.96 10.68 0.33 7.11
Misc_RNA 1J8G 5!B:5!D G:G H_1 [cWH][VI] 11.38 62.46; 29.0 33.46 -8.04 0.67 14.89
Misc_RNA 1J8G 5!B:5!C G:G H_1 [cWH][VI] 11.38 29.0; 62.46 33.46 -8.04 0.67 14.89
Misc_RNA 1J8G 6!B:6!D U:U H_1 [cWH][-] 9.65 34.75; 63.83 29.08 15.59 1.23 30.24
Misc_RNA 1J8G 6!B:6!C U:U H_1 [cWH][-] 9.65 63.83; 34.75 29.08 15.59 1.23 30.24
Misc_RNA 1J8G 11!B:33!B U:G rpS [cSS][-] 4.12 136.39; 107.19 29.21 103.91 0.42 23.63
Misc_RNA 1J8G 12!B:12!D G:G H_1 [cWH][VI] 11.32 65.38; 30.76 34.63 16.41 0.29 11.49
Misc_RNA 1J8G 12!B:12!C G:G H_1 [cWH][VI] 11.32 30.76; 65.38 34.63 16.41 0.29 11.49
Misc_RNA 1J8G 13!B:13!D G:G H_1 [cWH][VI] 11.41 62.88; 33.03 29.85 -13.62 0.58 13.1
Misc_RNA 1J8G 13!B:13!C G:G H_1 [cWH][VI] 11.41 33.03; 62.88 29.85 -13.62 0.58 13.1
Misc_RNA 1J8G 13!B:31!B G:U rpS [cSS][-] 4.16 105.08; 136.07 30.99 107.6 0.35 23.99
Misc_RNA 1J8G 14!B:14!D G:G H_1 [cWH][VI] 11.5 63.74; 27.6 36.14 8.44 0.24 4.66
Misc_RNA 1J8G 14!B:14!C G:G H_1 [cWH][VI] 11.5 27.6; 63.74 36.14 8.44 0.24 4.66
Misc_RNA 1J8G 15!B:15!D G:G H_1 [cWH][VI] 11.37 63.62; 26.48 37.14 -2.39 0.45 11.86
Misc_RNA 1J8G 15!B:15!C G:G H_1 [cWH][VI] 11.37 26.48; 63.62 37.14 -2.39 0.45 11.86
Misc_RNA 1J8G 16!B:16!D U:U H_1 [cWH][-] 9.18 68.4; 42.79 25.62 -19.3 2.32 49.06
Misc_RNA 1J8G 16!B:16!C U:U H_1 [cWH][-] 9.18 42.79; 68.4 25.62 -19.3 2.32 49.06
Misc_RNA 1J8G 22!B:22!D G:G H_1 [cWH][VI] 11.37 30.75; 65.09 34.34 15.9 0.32 11.28
Misc_RNA 1J8G 22!B:22!C G:G H_1 [cWH][VI] 11.37 65.09; 30.75 34.34 15.9 0.32 11.28
Misc_RNA 1J8G 23!B:23!D G:G H_1 [cWH][VI] 11.43 31.07; 63.5 32.43 -13.32 0.47 11.51
Misc_RNA 1J8G 23!B:23!C G:G H_1 [cWH][VI] 11.43 63.5; 31.07 32.43 -13.32 0.47 11.51
Misc_RNA 1J8G 24!B:24!D G:G H_1 [cWH][VI] 11.4 28.13; 64.49 36.36 11.73 0.39 9.0
Misc_RNA 1J8G 24!B:24!C G:G H_1 [cWH][VI] 11.4 64.49; 28.13 36.36 11.73 0.39 9.0
Misc_RNA 1J8G 25!B:25!D G:G H_1 [cWH][VI] 11.46 28.77; 63.66 34.88 -10.78 0.86 17.31
Misc_RNA 1J8G 25!B:25!C G:G H_1 [cWH][VI] 11.46 63.66; 28.77 34.88 -10.78 0.86 17.31
Misc_RNA 1J8G 26!B:26!D U:U H_1 [cWH][-] 9.84 63.91; 30.93 32.97 13.94 0.94 21.14
Misc_RNA 1J8G 26!B:26!C U:U H_1 [cWH][-] 9.84 30.93; 63.91 32.97 13.94 0.94 21.14
Misc_RNA 1J8G 32!B:32!D G:G H_1 [cWH][VI] 11.33 31.0; 64.87 33.88 15.69 0.3 11.43
Misc_RNA 1J8G 32!B:32!C G:G H_1 [cWH][VI] 11.33 64.87; 31.0 33.88 15.69 0.3 11.43
Misc_RNA 1J8G 33!B:33!D G:G H_1 [cWH][VI] 11.42 31.73; 63.43 31.7 -13.71 0.5 12.11
Misc_RNA 1J8G 33!B:33!C G:G H_1 [cWH][VI] 11.42 63.43; 31.73 31.7 -13.71 0.5 12.11
Misc_RNA 1J8G 34!B:34!D G:G H_1 [cWH][VI] 11.46 28.06; 63.76 35.7 9.66 0.25 5.91
Misc_RNA 1J8G 34!B:34!C G:G H_1 [cWH][VI] 11.46 63.76; 28.06 35.7 9.66 0.25 5.91
Misc_RNA 1J8G 35!B:35!D G:G H_1 [cWH][VI] 11.3 29.24; 64.42 35.18 -13.21 0.62 16.34
Misc_RNA 1J8G 35!B:35!C G:G H_1 [cWH][VI] 11.3 64.42; 29.24 35.18 -13.21 0.62 16.34
Misc_RNA 1J8G 36!B:36!D U:U H_3 [---][-] 9.28 79.3; 15.44 63.86 34.6 1.1 25.38
Misc_RNA 1J8G 36!B:36!C U:U H_3 [---][-] 9.28 15.44; 79.3 63.86 34.6 1.1 25.38
Misc_RNA 1J8G 1!C:23!C U:G rpS [cSS][-] 4.17 137.43; 108.74 28.69 101.02 0.51 21.76
Misc_RNA 1J8G 3!C:21!C G:U rpS [cSS][-] 4.24 106.79; 136.81 30.02 104.31 0.54 23.39
Misc_RNA 1J8G 11!C:33!C U:G rpS [cSS][-] 4.12 136.39; 107.19 29.21 103.91 0.42 23.63
Misc_RNA 1J8G 13!C:31!C G:U rpS [cSS][-] 4.16 105.08; 136.07 30.99 107.6 0.35 23.99
Misc_RNA 1J8G 1!D:23!D U:G rpS [cSS][-] 4.17 137.43; 108.74 28.69 101.02 0.51 21.76
Misc_RNA 1J8G 3!D:21!D G:U rpS [cSS][-] 4.24 106.79; 136.81 30.02 104.31 0.54 23.39
Misc_RNA 1J8G 11!D:33!D U:G rpS [cSS][-] 4.12 136.39; 107.19 29.21 103.91 0.42 23.63
Misc_RNA 1J8G 13!D:31!D G:U rpS [cSS][-] 4.16 105.08; 136.07 30.99 107.6 0.35 23.99